Citrus Sinensis ID: 010669

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500----
Protein Sequence
MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTCS
Secondary Structure (PSIPRED)
cEEEcccccccccEEEccccEEEHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEccEEccEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEEEcccEEEEEEccccEEEEEcccccccEEEEEcccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEcccEEEEEccccccccEEEEEEccccccEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccEEccccccHHHHHHHHHHHHHccccccccccccHHHHEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEccccccccEcccccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEcccccccEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEccccEEEEEccccccccEEEEEcccccccccEEEEEEEccccccc
Coil and Loop (DISEMBL)
mncsisgevpeepvvsknsgllfEKRLIERHIldygkcpvtgepltmddivpiktgkivkprpltaasipgmlgmfqnEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSErqimpaestavtsnaalsngkrapededlgpagkklhtgitPAIIAELTDCNAALSQQRkkrqvppalapiDALERYTqlashplhktskpgivsldihyskdviatggvdtnavlfdrpsgqivttlsghskkvtsvkfvtegdlfltgsadkTVRVwqgsedgnydckhtlKDHTAEVQAVTVHATNKYFVTASLdntwcfydlssgicltqvsdagtdgrpegytsaafhpdglilgtgTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDgvklwdlrklknfrsfessdsetptnsvdfdhsgsyLAVASADIRVYQVASVKAdwnciktfpdlsgtgaASFLFLFVLGQTCS
Flexible Loop (DISEMBL)
mncsisgevpeepvvsknsgLLFEKRLIERHILdygkcpvtgepltmddivpiktgkivkprpLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAqserqimpaestavtsnaalsngkrapededlgPAGKKLHTGITPAIIAELTDCNAALSQQRKKRQVPPALAPIDALERYTQLashplhktskpgiVSLDIHYSKDVIATGGVDTNAVLFDRPSGQivttlsghskkvtsvkfvtegdlfltgsadktvrVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRsfessdsetptnsvdfdHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTCS
Low Complexity Region (SEG)
MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTCS
Disordered region (IsUnstruct)
*******************GLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARL***************************************************HTGITPAIIAELTDCNAA***************PIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNF******************HSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ***
Disordered Region (DISOPRED)
MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTG****PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSL**QS********************************************IIAELT*******************APIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTC*
Disordered Region (DISEMBL)
****************KNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELTDCNAA***********PALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRS************VDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTCS
Disordered Region (DISPRO)
MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSER********************RAP**EDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVxxxxxxxxxxxxxxxxxxxxxIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	504	2.2.26 [Sep-21-2011]
O22785	525	Pre-mRNA-processing facto	yes	no	0.960	0.921	0.768	0.0
Q9AV81	527	U-box domain-containing p	yes	no	0.966	0.924	0.752	0.0
Q94BR4	523	Pre-mRNA-processing facto	no	no	0.962	0.927	0.752	0.0
Q9UMS4	504	Pre-mRNA-processing facto	yes	no	0.934	0.934	0.465	1e-112
Q08E38	504	Pre-mRNA-processing facto	yes	no	0.934	0.934	0.463	1e-111
Q9JMJ4	504	Pre-mRNA-processing facto	yes	no	0.934	0.934	0.461	1e-111
Q99KP6	504	Pre-mRNA-processing facto	yes	no	0.934	0.934	0.461	1e-111
Q5ZMA2	505	Pre-mRNA-processing facto	yes	no	0.934	0.932	0.450	1e-107
Q10051	492	Pre-mRNA-processing facto	yes	no	0.902	0.924	0.408	2e-96
Q7KWK5	514	Pre-mRNA-processing facto	yes	no	0.902	0.885	0.384	8e-81

>sp|O22785|PR19B_ARATH Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PRP19B PE=1 SV=3

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/492 (76%), Positives = 425/492 (86%), Gaps = 8/492 (1%)

Query: 1   MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
           MNC+ISGEVP EPVVS  SGLLFE+RLIERHI DYGKCPVTGEPLT+DDIVPIKTG+I+K
Sbjct: 1   MNCAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDIVPIKTGEIIK 60

Query: 61  PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
           P+ L  ASIPG+LG FQNEWDGLMLSNFALEQQLHTARQELSHALYQHD+ACRVIARLKK
Sbjct: 61  PKTLHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKK 120

Query: 121 ERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAE 180
           ERDEAR LLA+ ER I PA   AVT+NAALSNGKRA  DE+LGP  KKL  GI+  II E
Sbjct: 121 ERDEARQLLAEVERHI-PAAPEAVTANAALSNGKRAAVDEELGPDAKKLCPGISAEIITE 179

Query: 181 LTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIAT 240
           LTDCNAALSQ+RKKRQ+P  LA ID LER+TQL+SHPLHKT+KPGI S+DI +SKDVIAT
Sbjct: 180 LTDCNAALSQKRKKRQIPQTLASIDTLERFTQLSSHPLHKTNKPGICSMDILHSKDVIAT 239

Query: 241 GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300
           GGVD  AVLFDRPSGQI++TL+GHSKKVTSVKFV + DL LT SADKTVR+W+   DGNY
Sbjct: 240 GGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNY 299

Query: 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 360
            C +TL DH+AEV+AVTVH TNKYFV+ASLD TWCFYDLSSG CL QVSD   D +   Y
Sbjct: 300 ACGYTLNDHSAEVRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSD---DSKNVDY 356

Query: 361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420
           T+AAFHPDGLILGTGTS+++VKIWDVKSQANVAKFDGH G VTAISFSENGY+LATAA D
Sbjct: 357 TAAAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAED 416

Query: 421 GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIK 480
           GV+LWDLRKL+NF+SF S+D+    NSV+FD SGSYL +A++DI+VYQ ASVKA+WN IK
Sbjct: 417 GVRLWDLRKLRNFKSFLSADA----NSVEFDPSGSYLGIAASDIKVYQTASVKAEWNLIK 472

Query: 481 TFPDLSGTGAAS 492
           T PDLSGTG A+
Sbjct: 473 TLPDLSGTGKAT 484

Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immnunity. Functions as U-box E3 ubiquitin-protein ligase. May also serve as a support for spliceosome binding and activity.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9AV81|PUB72_ORYSJ U-box domain-containing protein 72 OS=Oryza sativa subsp. japonica GN=PUB72 PE=2 SV=1

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/492 (75%), Positives = 425/492 (86%), Gaps = 5/492 (1%)

Query: 1   MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
           M C+ISGEVP+EPVVSK SGLLFE+RL+ER+I D+GKCPVT E LTMDDIV +KT K+VK
Sbjct: 1   MICAISGEVPDEPVVSKKSGLLFERRLVERYIEDHGKCPVTKEELTMDDIVAVKTNKVVK 60

Query: 61  PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
           PR L AASIPG+LGMFQNEWD +MLS+FALEQQLHTARQELSHALYQHDAACRVIARLKK
Sbjct: 61  PRQLQAASIPGLLGMFQNEWDAIMLSSFALEQQLHTARQELSHALYQHDAACRVIARLKK 120

Query: 121 ERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAE 180
           ERDEAR+LLAQ+ERQI PA        A +SNGKRA EDE +GP GKK+  GI P +I E
Sbjct: 121 ERDEARALLAQAERQI-PASMAGAAPTAVVSNGKRAFEDE-VGPDGKKIRPGINPVMIDE 178

Query: 181 LTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIAT 240
           LT+CN  LS  RKKRQVPP LA IDA+ERYTQ++SHPLHKT+KPGI+S+DIH SKD+IAT
Sbjct: 179 LTECNTMLSAHRKKRQVPPTLASIDAIERYTQISSHPLHKTNKPGILSMDIHPSKDIIAT 238

Query: 241 GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300
           GG+DTNAVLFDRPSGQI+ TL+GHSKK+TS+KFV   +LF+TGSADKTV++WQGSE+GNY
Sbjct: 239 GGIDTNAVLFDRPSGQILCTLTGHSKKITSLKFVPRDELFVTGSADKTVKIWQGSEEGNY 298

Query: 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 360
           +C HTLKDHTAEV+AVTVHAT KYFVTAS DNTWCFYD+ SG CLTQV   G     EGY
Sbjct: 299 NCIHTLKDHTAEVEAVTVHATQKYFVTASKDNTWCFYDIPSGSCLTQV---GESSGQEGY 355

Query: 361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420
           TSA+FHPDGLILGTGT+EA+VKIWDVK+Q+NVAKF+GHVG VTA+SFSENGY+LATAA D
Sbjct: 356 TSASFHPDGLILGTGTTEAVVKIWDVKTQSNVAKFEGHVGPVTAMSFSENGYFLATAALD 415

Query: 421 GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIK 480
           GVKLWDLRKL+NFR+    DS+TPTNSV+FD SGSYLAV  +D RVYQVA+VK +WN +K
Sbjct: 416 GVKLWDLRKLRNFRTISPYDSDTPTNSVEFDFSGSYLAVGGSDTRVYQVANVKLEWNLVK 475

Query: 481 TFPDLSGTGAAS 492
           T PDLSGTG  +
Sbjct: 476 TLPDLSGTGKVT 487

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94BR4|PR19A_ARATH Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/492 (75%), Positives = 428/492 (86%), Gaps = 7/492 (1%)

Query: 1   MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
           MNC+ISGEVPEEPVVSK SGLL+EKRLI+ HI DYGKCPVTGEP T+DDIVPIKTGKIVK
Sbjct: 1   MNCAISGEVPEEPVVSKKSGLLYEKRLIQTHISDYGKCPVTGEPHTLDDIVPIKTGKIVK 60

Query: 61  PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
           P+PL  ASIPG+LG FQ EWD LMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
Sbjct: 61  PKPLHTASIPGLLGTFQTEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120

Query: 121 ERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAE 180
           ERDE+R LLA++ERQ +PA     TSNAALSNGKR  +D + GP  KK+  GI+  +I E
Sbjct: 121 ERDESRQLLAEAERQ-LPAAPEVATSNAALSNGKRGIDDGEQGPNAKKMRLGISAEVITE 179

Query: 181 LTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIAT 240
           LTDCNAALSQQRKKRQ+P  LA +DALE++TQL+SHPLHKT+KPGI S+DI +SKDVIAT
Sbjct: 180 LTDCNAALSQQRKKRQIPKTLASVDALEKFTQLSSHPLHKTNKPGIFSMDILHSKDVIAT 239

Query: 241 GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300
           GG+DT AVLFDRPSGQI++TL+GHSKKVTS+KFV + DL LT S+DKTVR+W  SEDGNY
Sbjct: 240 GGIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNY 299

Query: 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 360
             +HTLKDH+AEV+AVTVHATNKYFV+ASLD+TWCFYDLSSG+CL QV+DA  +     Y
Sbjct: 300 TSRHTLKDHSAEVRAVTVHATNKYFVSASLDSTWCFYDLSSGLCLAQVTDASENDV--NY 357

Query: 361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420
           T+AAFHPDGLILGTGT++++VKIWDVKSQANVAKF GH G +T+ISFSENGY+LATAA D
Sbjct: 358 TAAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHNGEITSISFSENGYFLATAALD 417

Query: 421 GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIK 480
           GV+LWDLRKLKNFR+F+  D+    NSV+FDHSGSYL +A++DIRV+Q ASVKA+WN IK
Sbjct: 418 GVRLWDLRKLKNFRTFDFPDA----NSVEFDHSGSYLGIAASDIRVFQAASVKAEWNPIK 473

Query: 481 TFPDLSGTGAAS 492
           T PDLSGTG A+
Sbjct: 474 TLPDLSGTGKAT 485

Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Functions as U-box E3 ubiquitin-protein ligase (By similarity). May also serve as a support for spliceosome binding and activity.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9UMS4|PRP19_HUMAN Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1

 Score =  404 bits (1038), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/496 (46%), Positives = 304/496 (61%), Gaps = 25/496 (5%)

Query: 3   CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPR 62
           CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+
Sbjct: 5   CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPK 64

Query: 63  PLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER 122
           P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE 
Sbjct: 65  PPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEV 124

Query: 123 DEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELT 182
             AR  LA  + Q       AV S+     G  A E  DLG        G+TP II +L 
Sbjct: 125 TAAREALATLKPQAGLIVPQAVPSSQPSVVG--AGEPMDLGEL-----VGMTPEIIQKLQ 177

Query: 183 DCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDIHYS-KDVI 238
           D    L+ +RKKR   VP  L   + L +Y Q+ASH  LH  S PGI++LD+  S  + I
Sbjct: 178 DKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKI 237

Query: 239 ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298
            TGG D N V+FD+ S QI+ TL GH+KKVTSV F    DL  + S D T+R+W      
Sbjct: 238 LTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVP--- 294

Query: 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358
           N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G   
Sbjct: 295 NASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC-- 351

Query: 359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418
             T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA
Sbjct: 352 SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAA 411

Query: 419 HD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN 477
            D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W 
Sbjct: 412 DDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT 466

Query: 478 CIKTFPDLSG--TGAA 491
            I  F + SG  TG A
Sbjct: 467 EILHFTEHSGLTTGVA 482

Plays a role in DNA double-strand break (DSB) repair and pre-mRNA splicing reaction. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity. Essential for spliceosome assembly in a oligomerization-dependent manner and might also be important for spliceosome stability. May have E3 ubiquitin ligase activity. The PSO4 complex is required in the DNA interstrand cross-links (ICLs) repair process. Overexpression of PRPF19 might extend the cellular life span by increasing the resistance to stress or by improving the DNA repair capacity of the cells.

Homo sapiens (taxid: 9606)

>sp|Q08E38|PRP19_BOVIN Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1

 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/496 (46%), Positives = 304/496 (61%), Gaps = 25/496 (5%)

Query: 3   CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPR 62
           CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+
Sbjct: 5   CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPK 64

Query: 63  PLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER 122
           P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE 
Sbjct: 65  PPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEV 124

Query: 123 DEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELT 182
             AR  LA  + Q       AV S+     G  A E  DLG        G+TP II +L 
Sbjct: 125 TAAREALATLKPQAGLIVPQAVPSSQPSVVG--AGEPMDLGEL-----VGMTPEIIQKLQ 177

Query: 183 DCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDIHYS-KDVI 238
           D    L+ +RKKR   VP  L   + L +Y Q+ASH  LH  S PGI++LD+  S  + I
Sbjct: 178 DKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKI 237

Query: 239 ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298
            TGG D N V+FD+ S QI+ TL GH+KKVTSV F    +L  + S D T+R+W      
Sbjct: 238 LTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVP--- 294

Query: 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358
           N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G   
Sbjct: 295 NASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC-- 351

Query: 359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418
             T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA
Sbjct: 352 SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAA 411

Query: 419 HD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN 477
            D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W 
Sbjct: 412 DDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT 466

Query: 478 CIKTFPDLSG--TGAA 491
            I  F + SG  TG A
Sbjct: 467 EILHFTEHSGLTTGVA 482

Plays a role in DNA double-strand break (DSB) repair. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity. Essential for spliceosome assembly in a oligomerization-dependent manner and might also be important for spliceosome stability. May have E3 ubiquitin ligase activity. The PSO4 complex is required in the DNA interstrand cross-links (ICLs) repair process.

Bos taurus (taxid: 9913)

>sp|Q9JMJ4|PRP19_RAT Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/496 (46%), Positives = 304/496 (61%), Gaps = 25/496 (5%)

Query: 3   CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPR 62
           CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+
Sbjct: 5   CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPK 64

Query: 63  PLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER 122
           P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE 
Sbjct: 65  PPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEV 124

Query: 123 DEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELT 182
             AR  LA  + Q       AV S+     G  A E  DLG        G+TP II +L 
Sbjct: 125 TAAREALATLKPQAGLIVPQAVPSSQPSVVG--AGEPMDLGEL-----VGMTPEIIQKLQ 177

Query: 183 DCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDIHYS-KDVI 238
           D    L+ +RKKR   VP  L   + L +Y Q+ASH  LH  S PGI++LD+  S  + I
Sbjct: 178 DKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKI 237

Query: 239 ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298
            TGG D N V+FD+ + QI+ TL GH+KKVTSV F    +L  + S D T+R+W      
Sbjct: 238 LTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVP--- 294

Query: 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358
           N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G   
Sbjct: 295 NTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC-- 351

Query: 359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418
             T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA
Sbjct: 352 SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAA 411

Query: 419 HD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN 477
            D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W 
Sbjct: 412 DDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT 466

Query: 478 CIKTFPDLSG--TGAA 491
            I  F + SG  TG A
Sbjct: 467 EILHFTEHSGLTTGVA 482

Plays a role in DNA double-strand break (DSB) repair. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity. Essential for spliceosome assembly in a oligomerization-dependent manner and might also be important for spliceosome stability. May have E3 ubiquitin ligase activity. The PSO4 complex is required in the DNA interstrand cross-links (ICLs) repair process.

Rattus norvegicus (taxid: 10116)

>sp|Q99KP6|PRP19_MOUSE Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/496 (46%), Positives = 304/496 (61%), Gaps = 25/496 (5%)

Query: 3   CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPR 62
           CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+
Sbjct: 5   CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPK 64

Query: 63  PLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER 122
           P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE 
Sbjct: 65  PPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEV 124

Query: 123 DEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELT 182
             AR  LA  + Q       AV S+     G  A E  DLG        G+TP II +L 
Sbjct: 125 TAAREALATLKPQAGLIVPQAVPSSQPSVVG--AGEPMDLGEL-----VGMTPEIIQKLQ 177

Query: 183 DCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDIHYS-KDVI 238
           D    L+ +RKKR   VP  L   + L +Y Q+ASH  LH  S PGI++LD+  S  + I
Sbjct: 178 DKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKI 237

Query: 239 ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298
            TGG D N V+FD+ + QI+ TL GH+KKVTSV F    +L  + S D T+R+W      
Sbjct: 238 LTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVP--- 294

Query: 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358
           N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G   
Sbjct: 295 NTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC-- 351

Query: 359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418
             T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA
Sbjct: 352 SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAA 411

Query: 419 HD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN 477
            D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W 
Sbjct: 412 DDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT 466

Query: 478 CIKTFPDLSG--TGAA 491
            I  F + SG  TG A
Sbjct: 467 EILHFTEHSGLTTGVA 482

Plays a role in DNA double-strand break (DSB) repair. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity. Essential for spliceosome assembly in a oligomerization-dependent manner and might also be important for spliceosome stability. May have E3 ubiquitin ligase activity. The PSO4 complex is required in the DNA interstrand cross-links (ICLs) repair process.

Mus musculus (taxid: 10090)

>sp|Q5ZMA2|PRP19_CHICK Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/497 (45%), Positives = 295/497 (59%), Gaps = 26/497 (5%)

Query: 3   CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPR 62
           CSIS EVPE P VS  S  ++E+RLIE++I + G  PV  +PL+ + ++ IK    ++PR
Sbjct: 5   CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLIDIKVAHPIRPR 64

Query: 63  PLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER 122
           P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE 
Sbjct: 65  PPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEV 124

Query: 123 DEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELT 182
             AR  LA  + Q       AV S+    N   A E  DLG        G+TP II +  
Sbjct: 125 TAAREALATLKPQAGLIVPQAVPSSQP--NVAGAGESMDLGELA-----GMTPEIIQKPQ 177

Query: 183 DCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP--LHKTSKPGIVSLDIHYS-KDV 237
           D    L+ +RKKR   VP  L      ++    +     LH  S PGI++LD+  S  + 
Sbjct: 178 DKATVLTTERKKRGKTVPEELVEARGAQQVPGRSPRMWGLHSASIPGILALDLCPSDTNK 237

Query: 238 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297
           I TGG D N ++FD+ S QI+ TL GHSKKVTSV F    DL  + S D T+R+W     
Sbjct: 238 ILTGGADKNVIVFDKSSEQILATLKGHSKKVTSVVFHPSQDLVFSASPDATIRIWSVP-- 295

Query: 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 357
            N  C   ++ H   V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  +    
Sbjct: 296 -NASCVQVVRAHEGSVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDESSGC-- 352

Query: 358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 417
              T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATA
Sbjct: 353 -ALTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATA 411

Query: 418 AHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADW 476
           A D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W
Sbjct: 412 ADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQW 466

Query: 477 NCIKTFPDLSG--TGAA 491
             I  F + SG  TG A
Sbjct: 467 TEILHFTEHSGLTTGVA 483

Plays a role in DNA double-strand break (DSB) repair. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity.

Gallus gallus (taxid: 9031)

>sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=3 SV=2

 Score =  353 bits (906), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/490 (40%), Positives = 294/490 (60%), Gaps = 35/490 (7%)

Query: 3   CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKI-VKP 61
           C ISGE+ E+PVVS+ SG +F++RLI + I + G  P++   L+ D +V +K+G     P
Sbjct: 5   CGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGTGSAP 64

Query: 62  RPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKE 121
           R ++  SIP +L M Q+EWD +ML++F+L QQL  ARQELSH+LYQHDAACRVI+RL KE
Sbjct: 65  RNVSGTSIPSLLKMLQDEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISRLSKE 124

Query: 122 RDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAEL 181
              AR  L+     + P  S  V  + ++       E ED          G++ AI+A+L
Sbjct: 125 LTAAREALS----TLKPHTSAKVDDDVSID------ESED--------QQGLSEAILAKL 166

Query: 182 TDCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDIHYSKDVI 238
            + + +L+ +RK+R   +P  LA  + L    Q ASH  +H T  PGI +LDI    ++ 
Sbjct: 167 EEKSKSLTAERKQRGKNLPEGLAKTEELAELKQTASHTGIHSTGTPGITALDI--KGNLS 224

Query: 239 ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298
            TGG+D   VL+D    Q++ T  GH+KK+ +V    +    ++ SAD  +RVW  ++  
Sbjct: 225 LTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSS 284

Query: 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358
           +   K  +  H A V  ++++A+  Y ++AS D+ W F D+ SG  L +VS     G   
Sbjct: 285 S---KAIIDVHQAPVTDISLNASGDYILSASDDSYWAFSDIRSGKSLCKVS--VEPGSQI 339

Query: 359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418
              S  FHPDGLI GTG ++A+VKIWD+K+Q   A F GH  AV +I+FSENGYYLAT +
Sbjct: 340 AVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATGS 399

Query: 419 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN 477
            DG VKLWDLRKLKN ++F +++ + P NS+ FD +G++L +    ++V  V S    W+
Sbjct: 400 EDGEVKLWDLRKLKNLKTF-ANEEKQPINSLSFDMTGTFLGIGGQKVQVLHVKS----WS 454

Query: 478 CIKTFPDLSG 487
            + +  D SG
Sbjct: 455 EVVSLSDHSG 464

Plays a role in DNA double-strand break (DSB) repair. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q7KWK5|PRP19_DICDI Pre-mRNA-processing factor 19 homolog OS=Dictyostelium discoideum GN=prp19 PE=3 SV=1

 Score =  301 bits (771), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 187/486 (38%), Positives = 269/486 (55%), Gaps = 31/486 (6%)

Query: 1   MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
           M C+ISG   EEPV+S  +G ++EKRLIE++I   GK P TGEPL + D++ +K GK VK
Sbjct: 1   MICAISGSTTEEPVISTKTGNVYEKRLIEKYIDTNGKEPTTGEPLGLSDLITVKIGKTVK 60

Query: 61  PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
           PRP TA SIP ML +FQNEWD LML  F L+QQ  T RQEL+H++YQ+DAACRVIARL K
Sbjct: 61  PRPTTATSIPSMLQLFQNEWDSLMLETFTLKQQHETVRQELAHSMYQYDAACRVIARLVK 120

Query: 121 ERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAE 180
           ERD ARS LA + R I+  +     +N   +N K   E              +   I   
Sbjct: 121 ERDAARSALANA-RNIVQQQQQQTNNNNNNNNNKDV-EMSSASTPSSSEDNLLDSTIYKR 178

Query: 181 LTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIH-YSKDVIA 239
           + + +  L + RK+R    +LA  DA++++   A    +  +   I SL+++    ++IA
Sbjct: 179 IAEKSEELIKTRKER-THQSLAEPDAIKQFKVSA----NVETDCQIKSLEVNSQDNNLIA 233

Query: 240 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299
            GG++ N  ++ R + ++ T + G S    +       +  ++  +D  +RV +G E  +
Sbjct: 234 MGGINGNVYVYSRETNELCTAIKGTSSAPINKVLFAPNNTIVSAGSDAVIRVVKGGESPS 293

Query: 300 YDCKHTLKD-----HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 354
                  K      H A V  +++H    Y +++SLD +   YD+ +G  LT    +   
Sbjct: 294 KKTYTQYKSTYQFAHKASVTDISLHVLGDYIISSSLDKSLNMYDIVNGTHLTSFGQS--- 350

Query: 355 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL 414
            +   YTS AFHPDG+    GT   +VKI+D+KS+ N   F G   AV  ISFSENGYYL
Sbjct: 351 -QQLCYTSVAFHPDGMFFAAGTQNGVVKIFDLKSKVNSFNFQGLSTAVNCISFSENGYYL 409

Query: 415 ATAAHDGVKLWDLRK--LKNFRSFESSDSETPT------NSVDFDHSGSYLAVASAD-IR 465
             A ++ VKL+DLRK   KN     S D +T T       S++FD+S  YL VAS++ I 
Sbjct: 410 TAADNNTVKLFDLRKAATKN-----SPDIQTITLDNQQIKSINFDYSSQYLGVASSNQIN 464

Query: 466 VYQVAS 471
           +Y   S
Sbjct: 465 LYSCKS 470

Plays a role in DNA double-strand break (DSB) repair. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	504
225433255	524	PREDICTED: U-box domain-containing prote	0.970	0.933	0.843	0.0
356575233	525	PREDICTED: U-box domain-containing prote	0.966	0.927	0.828	0.0
224099977	524	predicted protein [Populus trichocarpa]	0.974	0.937	0.826	0.0
356534898	525	PREDICTED: U-box domain-containing prote	0.966	0.927	0.820	0.0
224107501	524	predicted protein [Populus trichocarpa]	0.970	0.933	0.815	0.0
449432512	522	PREDICTED: U-box domain-containing prote	0.968	0.934	0.820	0.0
255574905	531	Pre-mRNA-splicing factor, putative [Rici	0.976	0.926	0.806	0.0
388505970	521	unknown [Medicago truncatula]	0.966	0.934	0.782	0.0
357439701	519	Pre-mRNA-processing factor-like protein	0.960	0.932	0.777	0.0
297826789	552	transducin family protein [Arabidopsis l	0.976	0.891	0.762	0.0

>gi|225433255|ref|XP_002285452.1| PREDICTED: U-box domain-containing protein 72 [Vitis vinifera] gi|296083725|emb|CBI23714.3| unnamed protein product [Vitis vinifera]

 Score =  869 bits (2245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/493 (84%), Positives = 454/493 (92%), Gaps = 4/493 (0%)

Query: 1   MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
           MNCS+SGEVPEEPVVSK SGLLFEKRLIERHI DYGKCP+TGEPLTMDDIVPI+TGKIVK
Sbjct: 1   MNCSMSGEVPEEPVVSKKSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIQTGKIVK 60

Query: 61  PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
           PRP+ AASIPGMLGMFQ EWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
Sbjct: 61  PRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120

Query: 121 ERDEARSLLAQSERQIMPAESTAVTSNA-ALSNGKRAPEDEDLGPAGKKLHTGITPAIIA 179
           ERDEARSLLAQSERQI  + STA   NA ALSNGKRA EDE+LGP GKKL  GI+ +II 
Sbjct: 121 ERDEARSLLAQSERQIPMSMSTATAVNASALSNGKRAAEDEELGPNGKKLRPGISASIIT 180

Query: 180 ELTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIA 239
           ELTDCNAALSQQRKKRQ+P +LAPIDA+ERYTQL+S+PLHKT+KPGI+S DI+YSKD+IA
Sbjct: 181 ELTDCNAALSQQRKKRQIPTSLAPIDAVERYTQLSSYPLHKTNKPGILSADIYYSKDIIA 240

Query: 240 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299
           TGGVD NAVLFDR SGQI++TLSGHSKKVTSVKFVT+ DLFLT SADKTVRVWQGS++ N
Sbjct: 241 TGGVDANAVLFDRQSGQILSTLSGHSKKVTSVKFVTQDDLFLTASADKTVRVWQGSDNEN 300

Query: 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359
           Y+C+H LKDHTAEVQAVTVHATN YFVTASLDNTWCFYDLSSG+CLTQV+DA      EG
Sbjct: 301 YNCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYDLSSGLCLTQVADASGS---EG 357

Query: 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH 419
           YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA+FDGHVGAVTAISFSENGY+LATAAH
Sbjct: 358 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVARFDGHVGAVTAISFSENGYFLATAAH 417

Query: 420 DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCI 479
           DGVKLWDLRKL+NFR+F   DS T TNSV+FDHSG+YLA+A +DIRVYQVA+VK++WNCI
Sbjct: 418 DGVKLWDLRKLRNFRTFTPYDSNTATNSVEFDHSGNYLAIAGSDIRVYQVANVKSEWNCI 477

Query: 480 KTFPDLSGTGAAS 492
           KTFPDLSGTG A+
Sbjct: 478 KTFPDLSGTGKAT 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575233|ref|XP_003555746.1| PREDICTED: U-box domain-containing protein 72 [Glycine max]

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/490 (82%), Positives = 450/490 (91%), Gaps = 3/490 (0%)

Query: 1   MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
           MNCSISGEVPEEPVVS+NSGLLFEKRLIERHI DYGKCP+TGEPLTMDDIVPIKTGKIVK
Sbjct: 1   MNCSISGEVPEEPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIKTGKIVK 60

Query: 61  PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
           PRP+ AASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
Sbjct: 61  PRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120

Query: 121 ERDEARSLLAQSERQIMPAESTAVTSNA-ALSNGKRAPEDEDLGPAGKKLHTGITPAIIA 179
           ERDEARSLLAQ+ERQ   +   A+T+NA  LSNGKRA EDEDL P  KK+H GI+ +II+
Sbjct: 121 ERDEARSLLAQAERQFPVSAPNAITANAPVLSNGKRAAEDEDLAPGAKKIHPGISSSIIS 180

Query: 180 ELTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIA 239
           ELTDCNAALSQQRKKRQ+PP LAP++ALE YTQ++SHP HKT+K GI+SLDI YSKD+IA
Sbjct: 181 ELTDCNAALSQQRKKRQIPPTLAPVEALEAYTQISSHPFHKTNKQGIISLDILYSKDLIA 240

Query: 240 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299
           TGG+DTNAV+FDRPSGQI++TLSGHSKKVTSVKFV +G+ FLT SADKTVR+WQGS+DGN
Sbjct: 241 TGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGESFLTASADKTVRLWQGSDDGN 300

Query: 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359
           Y+C+H LKDH+AEVQAVTVHATN YFVTASLD +WCFY+LSSG CLTQV D  T G  EG
Sbjct: 301 YNCRHILKDHSAEVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVYD--TSGSSEG 358

Query: 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH 419
           YTSAAFHPDGLILGTGT+E+LVKIWDVKSQANVA+FDGH G VTAISFSENGY+LATAAH
Sbjct: 359 YTSAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAH 418

Query: 420 DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCI 479
           DGVKLWDLRKLKNFR+F   DSETPT+SV+FDHSGSYLAVA +DIR+YQVA+VK++WNCI
Sbjct: 419 DGVKLWDLRKLKNFRNFAPYDSETPTSSVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCI 478

Query: 480 KTFPDLSGTG 489
           KTFPDLSGTG
Sbjct: 479 KTFPDLSGTG 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099977|ref|XP_002311694.1| predicted protein [Populus trichocarpa] gi|222851514|gb|EEE89061.1| predicted protein [Populus trichocarpa]

 Score =  860 bits (2221), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/495 (82%), Positives = 448/495 (90%), Gaps = 4/495 (0%)

Query: 1   MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
           M+CSISGEVPE+PVVSK SGLL+EKRLIERHI +YGKCP+TGEPLTMDDIVP+KTGKIVK
Sbjct: 1   MHCSISGEVPEQPVVSKKSGLLYEKRLIERHISEYGKCPITGEPLTMDDIVPVKTGKIVK 60

Query: 61  PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
           PR +  ASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
Sbjct: 61  PRTVQTASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120

Query: 121 ERDEARSLLAQSERQIMPAESTAVTSNAA-LSNGKRAPEDEDLGPAGKKLHTGITPAIIA 179
           ERDEARSLLAQ+ERQI  + S AVT NA+ LSNGKRA ED+DLG  GK++  GI+ +II 
Sbjct: 121 ERDEARSLLAQAERQIPMSASEAVTENASVLSNGKRAAEDDDLGQPGKRVRPGISASIIT 180

Query: 180 ELTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIA 239
           ELTDCNA LSQQRKKRQ+PP LAPI ALERYTQL+SHPLHKTSKPGI+S+DI YSKD+IA
Sbjct: 181 ELTDCNATLSQQRKKRQIPPTLAPIGALERYTQLSSHPLHKTSKPGILSIDIQYSKDIIA 240

Query: 240 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299
           TGGVD  AV+FDR SGQIV+TLSGHSKKVTSVKFV EG+ FLTGSADKT+RVWQGSEDGN
Sbjct: 241 TGGVDATAVVFDRLSGQIVSTLSGHSKKVTSVKFVAEGEFFLTGSADKTIRVWQGSEDGN 300

Query: 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359
           YDC+H LKDHTAEVQAVTVHATN YFVTASLDNTWCFYDLSSG+C+TQV+D     + +G
Sbjct: 301 YDCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYDLSSGLCMTQVADT---SKTDG 357

Query: 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH 419
           YTSAAFHPDGLILGTGTSEA+VKIWDVKSQANVAKF+GHVG VTAISFSENGY+LATAAH
Sbjct: 358 YTSAAFHPDGLILGTGTSEAVVKIWDVKSQANVAKFEGHVGPVTAISFSENGYFLATAAH 417

Query: 420 DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCI 479
           D VKLWDLRKLKNFR+    DS+TPTNSV+FDHSGSYL +A +DIRVYQV SVKADWNCI
Sbjct: 418 DSVKLWDLRKLKNFRTLNLYDSDTPTNSVEFDHSGSYLGIAGSDIRVYQVGSVKADWNCI 477

Query: 480 KTFPDLSGTGAASFL 494
           KT PDLSGTG A+ L
Sbjct: 478 KTLPDLSGTGRATCL 492

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534898|ref|XP_003535988.1| PREDICTED: U-box domain-containing protein 72-like [Glycine max]

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/490 (82%), Positives = 447/490 (91%), Gaps = 3/490 (0%)

Query: 1   MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
           MNCSISGEVPE+PVVS+NSGLLFEKRLIERHI DYGKCP+TGEPLTMDDIVPIKTGKIVK
Sbjct: 1   MNCSISGEVPEDPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIKTGKIVK 60

Query: 61  PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
           PRP+ AASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
Sbjct: 61  PRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120

Query: 121 ERDEARSLLAQSERQIMPAESTAVTSN-AALSNGKRAPEDEDLGPAGKKLHTGITPAIIA 179
           ERDEARS+LAQ+ERQ   +   A+T+N   LSNGKRA EDEDL P  KK+H GI+ +II+
Sbjct: 121 ERDEARSVLAQAERQFPASAPNAITANDPVLSNGKRAAEDEDLAPGAKKIHPGISSSIIS 180

Query: 180 ELTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIA 239
           ELTDCNA+LSQQRKKRQ+P  LAP++ALE YTQ++SHP HKT+K GI+SLDI YSKD+IA
Sbjct: 181 ELTDCNASLSQQRKKRQIPATLAPVEALEAYTQISSHPFHKTNKQGIISLDILYSKDLIA 240

Query: 240 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299
           TGG+DTNAV+FDRPSGQI+ TLSGHSKKVTSVKFV +G+ FLT SADKTVR+WQGS+DGN
Sbjct: 241 TGGIDTNAVIFDRPSGQILATLSGHSKKVTSVKFVAQGESFLTASADKTVRLWQGSDDGN 300

Query: 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359
           Y+C+H LKDHTAEVQAVTVHATN YFVTASLD +WCFY+LSSG CLTQV D  T G  EG
Sbjct: 301 YNCRHILKDHTAEVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVYD--TSGSSEG 358

Query: 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH 419
           YTSAAFHPDGLILGTGT+E+LVKIWDVKSQANVA+FDGH G VTAISFSENGY+LATAAH
Sbjct: 359 YTSAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAH 418

Query: 420 DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCI 479
           DGVKLWDLRKLKNFR+F   DSETPT+SV+FDHSGSYLAVA +DIR+YQVA+VK++WNCI
Sbjct: 419 DGVKLWDLRKLKNFRNFAPYDSETPTSSVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCI 478

Query: 480 KTFPDLSGTG 489
           KTFPDLSGTG
Sbjct: 479 KTFPDLSGTG 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107501|ref|XP_002314503.1| predicted protein [Populus trichocarpa] gi|222863543|gb|EEF00674.1| predicted protein [Populus trichocarpa]

 Score =  850 bits (2196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/493 (81%), Positives = 446/493 (90%), Gaps = 4/493 (0%)

Query: 1   MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
           M+CSISGEVP EPVVSK SG+L+EKRLIERHI +YGKCP+TGEPLTMDD+VP++TGKIVK
Sbjct: 1   MHCSISGEVPGEPVVSKRSGILYEKRLIERHISEYGKCPITGEPLTMDDVVPVETGKIVK 60

Query: 61  PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
           PR +  ASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
Sbjct: 61  PRTVQTASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120

Query: 121 ERDEARSLLAQSERQIMPAESTAVTSNAA-LSNGKRAPEDEDLGPAGKKLHTGITPAIIA 179
           ERDEARSLLAQ+ERQ+    S AVT+NA+ LSNGKRA +D+DLG  GK++  GI+ +II 
Sbjct: 121 ERDEARSLLAQAERQVPMFTSEAVTANASVLSNGKRAAKDDDLGQPGKRIRPGISASIIT 180

Query: 180 ELTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIA 239
           ELT+CNAALSQQRKKRQVPP LAPIDALERYTQL+SHPLH+TSKPGI+S+DI YSKD+IA
Sbjct: 181 ELTECNAALSQQRKKRQVPPTLAPIDALERYTQLSSHPLHRTSKPGILSIDIQYSKDIIA 240

Query: 240 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299
           TGG D  AV+FDRPSGQI + LSGHSKKVTSVKFV EG+ FLTGSADKTVRVWQGSEDGN
Sbjct: 241 TGGADATAVIFDRPSGQIASALSGHSKKVTSVKFVGEGEFFLTGSADKTVRVWQGSEDGN 300

Query: 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359
           YDC+H LKDHTAEVQAVTVHATN YFVTASLDNTWCFYDLSSG+CLTQV+D     + +G
Sbjct: 301 YDCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYDLSSGLCLTQVADT---SKTDG 357

Query: 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH 419
           YTSAAFHPDGLILGTGTSEA+VKIWDVKSQANVAKF+GHVG VTAI+FSENGY+LATAAH
Sbjct: 358 YTSAAFHPDGLILGTGTSEAVVKIWDVKSQANVAKFEGHVGPVTAITFSENGYFLATAAH 417

Query: 420 DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCI 479
           D VKLWDLRKLKNFR+    DS+TPTNSV+FDHSGSYL ++ +DIRVYQV SVKADWNCI
Sbjct: 418 DSVKLWDLRKLKNFRTLNLYDSDTPTNSVEFDHSGSYLGISGSDIRVYQVGSVKADWNCI 477

Query: 480 KTFPDLSGTGAAS 492
           KT PDLSGTG A+
Sbjct: 478 KTLPDLSGTGRAT 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432512|ref|XP_004134043.1| PREDICTED: U-box domain-containing protein 72-like [Cucumis sativus]

 Score =  846 bits (2185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/496 (82%), Positives = 450/496 (90%), Gaps = 8/496 (1%)

Query: 1   MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
           MNCSISGE+PEEPVVS+NSGLLFEKRLIERHILDYGKCPVTGEPL++DDIVPIKTGKIVK
Sbjct: 1   MNCSISGEIPEEPVVSRNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVK 60

Query: 61  PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
           PR   AASIPGMLGMFQNEWD L+LSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
Sbjct: 61  PR--QAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 118

Query: 121 ERDEARSLLAQSERQIMPAESTAVTSNAALSN--GKRAPEDEDLGPAGKKLHTGITPAII 178
           ERDEARSLLA +ERQ MP  ST+ +SNAA  N  GKR  EDE+LGP GKK+  GI+ A+I
Sbjct: 119 ERDEARSLLALAERQ-MPLSSTSFSSNAAAVNVNGKRVNEDEELGPDGKKIRPGISDAVI 177

Query: 179 AELTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVI 238
           +ELT+CNAALSQQRK+RQ+P  L P++ALE YTQ++SHPLHKTSKPGI+SLDIH+ KDVI
Sbjct: 178 SELTECNAALSQQRKRRQIPATLVPVEALENYTQISSHPLHKTSKPGIMSLDIHHEKDVI 237

Query: 239 ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298
           ATGG+DTNAVLF R SG+I++TLSGHSKKVTSVKFV   DLFLTGSADKTVRVWQ S+DG
Sbjct: 238 ATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVGRDDLFLTGSADKTVRVWQQSDDG 297

Query: 299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358
           NY+C+H LKDHTAEVQAVTVHATN +FVTASLDNTWCFY+L+SG+CLTQV++   D   E
Sbjct: 298 NYNCRHILKDHTAEVQAVTVHATNDFFVTASLDNTWCFYELASGLCLTQVAE---DSETE 354

Query: 359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418
           GYTSAAFHPDGLILGTGTSEALVKIWDVKSQ NVAKFDGHVGAVTAISFSENGY+LATAA
Sbjct: 355 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVAKFDGHVGAVTAISFSENGYFLATAA 414

Query: 419 HDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNC 478
           HDGVKLWDLRKLKNFR+F   DS+TPTNSVDFDHSGSYLA+A +DIRVYQVASVK++WNC
Sbjct: 415 HDGVKLWDLRKLKNFRTFAPYDSDTPTNSVDFDHSGSYLAIAGSDIRVYQVASVKSEWNC 474

Query: 479 IKTFPDLSGTGAASFL 494
           IKT PDLSGTG A+ L
Sbjct: 475 IKTLPDLSGTGKATCL 490

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574905|ref|XP_002528359.1| Pre-mRNA-splicing factor, putative [Ricinus communis] gi|223532227|gb|EEF34031.1| Pre-mRNA-splicing factor, putative [Ricinus communis]

 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/497 (80%), Positives = 443/497 (89%), Gaps = 5/497 (1%)

Query: 1   MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
           M+CSISGEVPEEPVVSK SGLLFEKRLIERHI DYGKCP+T EPLT+DDIVP+K GKIVK
Sbjct: 1   MHCSISGEVPEEPVVSKKSGLLFEKRLIERHISDYGKCPITSEPLTLDDIVPMKAGKIVK 60

Query: 61  PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
           PR + +ASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
Sbjct: 61  PRTIQSASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120

Query: 121 ERDEARSLLAQSERQI-MPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIA 179
           ERDEARSLLAQ++RQI +   + A  +  A SNGKRA  D+DLGP GKKL  GI+  II 
Sbjct: 121 ERDEARSLLAQADRQIPLSVTAAATENAYAASNGKRAAADDDLGPPGKKLRPGISATIIT 180

Query: 180 ELTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIA 239
           ELTDCNAALSQQRK+RQ+P  LAP+DA+ERYTQL+SHPLHKT+KPGIVS+DI YSKD+IA
Sbjct: 181 ELTDCNAALSQQRKRRQIPSTLAPVDAVERYTQLSSHPLHKTNKPGIVSMDIQYSKDIIA 240

Query: 240 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299
           TGGVD+ AVLFDRPSGQI++TLSGHSKKVTSV+FV EGDLFLTGSADKTVRVWQGSEDGN
Sbjct: 241 TGGVDSTAVLFDRPSGQILSTLSGHSKKVTSVRFVAEGDLFLTGSADKTVRVWQGSEDGN 300

Query: 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVS----DAGTDG 355
           YDC+H LKDHTAEVQAVTVHATN YFVTASLD+TWCFYD+SSG+CL QV+          
Sbjct: 301 YDCRHILKDHTAEVQAVTVHATNNYFVTASLDSTWCFYDISSGLCLAQVADSSKSDTDSS 360

Query: 356 RPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLA 415
            PEGYTSAAFHPDGLILGTGTS+A+VKIWDVKSQANVAKF+GHVG VTAISFSENGY+LA
Sbjct: 361 SPEGYTSAAFHPDGLILGTGTSDAVVKIWDVKSQANVAKFEGHVGPVTAISFSENGYFLA 420

Query: 416 TAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKAD 475
           TAA+D VKLWDLRKLKNFR+    DS+TPTNSV+FDHSG YL VA +DIRV+QVASVKAD
Sbjct: 421 TAAYDSVKLWDLRKLKNFRTLNLYDSDTPTNSVEFDHSGCYLGVAGSDIRVFQVASVKAD 480

Query: 476 WNCIKTFPDLSGTGAAS 492
           WNC+KT PDLSGTG A+
Sbjct: 481 WNCVKTLPDLSGTGKAT 497

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505970|gb|AFK41051.1| unknown [Medicago truncatula]

 Score =  816 bits (2108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/493 (78%), Positives = 443/493 (89%), Gaps = 6/493 (1%)

Query: 1   MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
           MNCSISGEVP+EPVVSK+SGLLFEKRLIERHI+D+GKCPVTGEPLTMDDIVPIKTGKIVK
Sbjct: 1   MNCSISGEVPDEPVVSKSSGLLFEKRLIERHIMDFGKCPVTGEPLTMDDIVPIKTGKIVK 60

Query: 61  PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
           PRP+ AASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
Sbjct: 61  PRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120

Query: 121 ERDEARSLLAQSERQIMPAESTAVTSNAAL-SNGKRAPEDEDLGPAGKKLHTGITPAIIA 179
           ERDEARS+LAQ+ERQ   +   +VT+NA + SNGKRA +DE+L P  KKLH GI+ +II+
Sbjct: 121 ERDEARSILAQAERQFPISTPNSVTANAPVHSNGKRAADDEELAPNAKKLHPGISSSIIS 180

Query: 180 ELTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIA 239
           ELTDCNAALS +RKKR++P  LA +DALE YTQ++SHPL+KTSK GI++LDI +SKD+IA
Sbjct: 181 ELTDCNAALSGKRKKREIPATLASVDALETYTQISSHPLNKTSKQGIIALDILHSKDLIA 240

Query: 240 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 299
           TG +DTNAV+FDRPSGQ++ TL+GHSKKVTSVKFV +G+  +TGSADKTVR+WQGS+DG+
Sbjct: 241 TGNIDTNAVIFDRPSGQVLATLTGHSKKVTSVKFVGQGESIITGSADKTVRLWQGSDDGH 300

Query: 300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 359
           Y+CK  LKDH+AEV+AVTVHATN YFVTASLD +WCFY+LSSG CLTQVSD+      EG
Sbjct: 301 YNCKQILKDHSAEVEAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVSDSS-----EG 355

Query: 360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH 419
           YTSAAFHPDGLILGTGT+++LVKIWDVKSQANVAKFDGHVG VTAISFSENGYYLATAAH
Sbjct: 356 YTSAAFHPDGLILGTGTTDSLVKIWDVKSQANVAKFDGHVGHVTAISFSENGYYLATAAH 415

Query: 420 DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCI 479
           DGVKLWDLRKLKNFR +   DS TPTNSV+FDHSGSYLAV  +D+R+ QVA+VK++WN I
Sbjct: 416 DGVKLWDLRKLKNFRDYGPYDSATPTNSVEFDHSGSYLAVGGSDVRILQVANVKSEWNLI 475

Query: 480 KTFPDLSGTGAAS 492
           KT PDLSGTG ++
Sbjct: 476 KTLPDLSGTGKST 488

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439701|ref|XP_003590128.1| Pre-mRNA-processing factor-like protein [Medicago truncatula] gi|355479176|gb|AES60379.1| Pre-mRNA-processing factor-like protein [Medicago truncatula]

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/490 (77%), Positives = 439/490 (89%), Gaps = 6/490 (1%)

Query: 4   SISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRP 63
           + SGEVP+EPVVSK+SGLLFEKRLIERHI+D+GKCPVTGEPLTMDDIVPIKTGKIVKPRP
Sbjct: 2   NFSGEVPDEPVVSKSSGLLFEKRLIERHIMDFGKCPVTGEPLTMDDIVPIKTGKIVKPRP 61

Query: 64  LTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERD 123
           + AASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERD
Sbjct: 62  VQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERD 121

Query: 124 EARSLLAQSERQIMPAESTAVTSNAAL-SNGKRAPEDEDLGPAGKKLHTGITPAIIAELT 182
           EARS+LAQ+ERQ   +   +VT+NA + SNGKRA +DE+L P  KKLH GI+ +II+ELT
Sbjct: 122 EARSILAQAERQFPISTPNSVTANAPVHSNGKRAADDEELAPNAKKLHPGISSSIISELT 181

Query: 183 DCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGG 242
           DCNAALS +RKKR++P  LA +DALE YTQ++SHPL+KTSK GI++LDI +SKD+IATG 
Sbjct: 182 DCNAALSGKRKKREIPATLASVDALETYTQISSHPLNKTSKQGIIALDILHSKDLIATGN 241

Query: 243 VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302
           +DTNAV+FDRPSGQ++ TL+GHSKKVTSVKFV +G+  +TGSADKTVR+WQGS+DG+Y+C
Sbjct: 242 IDTNAVIFDRPSGQVLATLTGHSKKVTSVKFVGQGESIITGSADKTVRLWQGSDDGHYNC 301

Query: 303 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 362
           K  LKDH+AEV+AVTVHATN YFVTASLD +WCFY+LSSG CLTQVSD+      EGYTS
Sbjct: 302 KQILKDHSAEVEAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVSDSS-----EGYTS 356

Query: 363 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV 422
           AAFHPDGLILGTGT+++LVKIWDVKSQANVAKFDGHVG VTAISFSENGYYLATAAHDGV
Sbjct: 357 AAFHPDGLILGTGTTDSLVKIWDVKSQANVAKFDGHVGHVTAISFSENGYYLATAAHDGV 416

Query: 423 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTF 482
           KLWDLRKLKNFR +   DS TPTNSV+FDHSGSYLAV  +D+R+ QVA+VK++WN IKT 
Sbjct: 417 KLWDLRKLKNFRDYGPYDSATPTNSVEFDHSGSYLAVGGSDVRILQVANVKSEWNLIKTL 476

Query: 483 PDLSGTGAAS 492
           PDLSGTG ++
Sbjct: 477 PDLSGTGKST 486

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826789|ref|XP_002881277.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297327116|gb|EFH57536.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/500 (76%), Positives = 429/500 (85%), Gaps = 8/500 (1%)

Query: 1   MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
           MNC+ISGEVP+EPVVS  SGLLFE+RLIERHI DYGKCPVTGEPLT+DDIVPIKTG+I+K
Sbjct: 1   MNCAISGEVPKEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDIVPIKTGEIIK 60

Query: 61  PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
           P+ L  ASIPG+LG FQNEWDGLMLSNFALEQQLHTARQELSHALYQHD+ACRVIARLKK
Sbjct: 61  PKTLHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKK 120

Query: 121 ERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAE 180
           ERDEAR LLA+ ER I PA   AVT+NAALSNGKRA  DE+LGP  KKL  GI+  II E
Sbjct: 121 ERDEARQLLAEVERHI-PAAPEAVTANAALSNGKRAAGDEELGPNAKKLCPGISAEIITE 179

Query: 181 LTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIAT 240
           LTDCNAALSQ+RKKRQ+P  LA IDALER+TQL+SHPLHKT+KPGI S+DI +SKDVIAT
Sbjct: 180 LTDCNAALSQKRKKRQIPQTLASIDALERFTQLSSHPLHKTNKPGICSMDILHSKDVIAT 239

Query: 241 GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300
           GGVD  AVLFDRPSGQI++TL+GHSKKVTSVKFV + DL LT SADKTVR+W+   DGNY
Sbjct: 240 GGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDTDLVLTASADKTVRIWRNPGDGNY 299

Query: 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 360
            C HTL DH+AEV+AVTVH TNKYFV+ASLD+TWCFYDLSSG CL QVSD   +     Y
Sbjct: 300 ACGHTLNDHSAEVRAVTVHPTNKYFVSASLDSTWCFYDLSSGSCLAQVSDGSENA---DY 356

Query: 361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420
           T+AAFHPDGLILGTGTS+++VKIWDVKSQANVAKFDGH G VTAISFSENGY+LATAA D
Sbjct: 357 TAAAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAED 416

Query: 421 GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIK 480
           GV+LWDLRKL+NF+SF S+D+    NSV+FD SGSYL +A++DIRVYQ ASVKA+WN IK
Sbjct: 417 GVRLWDLRKLRNFKSFLSADA----NSVEFDPSGSYLGIAASDIRVYQTASVKAEWNLIK 472

Query: 481 TFPDLSGTGAASFLFLFVLG 500
           T PDLSGTG A+ +     G
Sbjct: 473 TLPDLSGTGKATCVKTITYG 492

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	504
UNIPROTKB|Q9AV81	527	PUB72 "U-box domain-containing	0.960	0.918	0.756	3.9e-202
TAIR|locus:2051094	525	MAC3B "MOS4-associated complex	0.960	0.921	0.768	2.8e-201
TAIR|locus:2018319	523	MAC3A "AT1G04510" [Arabidopsis	0.962	0.927	0.752	1.2e-200
UNIPROTKB|Q9UMS4	504	PRPF19 "Pre-mRNA-processing fa	0.934	0.934	0.465	8.6e-104
UNIPROTKB|B2CCY7	504	PRPF19 "Nuclear matrix protein	0.934	0.934	0.463	2.3e-103
UNIPROTKB|Q08E38	504	PRPF19 "Pre-mRNA-processing fa	0.934	0.934	0.463	2.3e-103
ZFIN|ZDB-GENE-030131-263	505	prp19 "PRP19/PSO4 homolog (S.	0.932	0.930	0.457	2.9e-103
UNIPROTKB|E2R8L3	513	PRPF19 "Uncharacterized protei	0.934	0.918	0.461	2.9e-103
MGI|MGI:106247	504	Prpf19 "PRP19/PSO4 pre-mRNA pr	0.934	0.934	0.461	4.7e-103
RGD|708496	504	Prpf19 "PRP19/PSO4 pre-mRNA pr	0.934	0.934	0.461	4.7e-103

UNIPROTKB|Q9AV81 PUB72 "U-box domain-containing protein 72" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1956 (693.6 bits), Expect = 3.9e-202, P = 3.9e-202
 Identities = 370/489 (75%), Positives = 427/489 (87%)

Query:     1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
             M C+ISGEVP+EPVVSK SGLLFE+RL+ER+I D+GKCPVT E LTMDDIV +KT K+VK
Sbjct:     1 MICAISGEVPDEPVVSKKSGLLFERRLVERYIEDHGKCPVTKEELTMDDIVAVKTNKVVK 60

Query:    61 PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
             PR L AASIPG+LGMFQNEWD +MLS+FALEQQLHTARQELSHALYQHDAACRVIARLKK
Sbjct:    61 PRQLQAASIPGLLGMFQNEWDAIMLSSFALEQQLHTARQELSHALYQHDAACRVIARLKK 120

Query:   121 ERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAE 180
             ERDEAR+LLAQ+ERQI PA        A +SNGKRA EDE +GP GKK+  GI P +I E
Sbjct:   121 ERDEARALLAQAERQI-PASMAGAAPTAVVSNGKRAFEDE-VGPDGKKIRPGINPVMIDE 178

Query:   181 LTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIAT 240
             LT+CN  LS  RKKRQVPP LA IDA+ERYTQ++SHPLHKT+KPGI+S+DIH SKD+IAT
Sbjct:   179 LTECNTMLSAHRKKRQVPPTLASIDAIERYTQISSHPLHKTNKPGILSMDIHPSKDIIAT 238

Query:   241 GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300
             GG+DTNAVLFDRPSGQI+ TL+GHSKK+TS+KFV   +LF+TGSADKTV++WQGSE+GNY
Sbjct:   239 GGIDTNAVLFDRPSGQILCTLTGHSKKITSLKFVPRDELFVTGSADKTVKIWQGSEEGNY 298

Query:   301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 360
             +C HTLKDHTAEV+AVTVHAT KYFVTAS DNTWCFYD+ SG CLTQV ++   G+ EGY
Sbjct:   299 NCIHTLKDHTAEVEAVTVHATQKYFVTASKDNTWCFYDIPSGSCLTQVGESS--GQ-EGY 355

Query:   361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420
             TSA+FHPDGLILGTGT+EA+VKIWDVK+Q+NVAKF+GHVG VTA+SFSENGY+LATAA D
Sbjct:   356 TSASFHPDGLILGTGTTEAVVKIWDVKTQSNVAKFEGHVGPVTAMSFSENGYFLATAALD 415

Query:   421 GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIK 480
             GVKLWDLRKL+NFR+    DS+TPTNSV+FD SGSYLAV  +D RVYQVA+VK +WN +K
Sbjct:   416 GVKLWDLRKLRNFRTISPYDSDTPTNSVEFDFSGSYLAVGGSDTRVYQVANVKLEWNLVK 475

Query:   481 TFPDLSGTG 489
             T PDLSGTG
Sbjct:   476 TLPDLSGTG 484

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2051094 MAC3B "MOS4-associated complex 3B" [Arabidopsis thaliana (taxid:3702)]

 Score = 1948 (690.8 bits), Expect = 2.8e-201, P = 2.8e-201
 Identities = 378/492 (76%), Positives = 425/492 (86%)

Query:     1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
             MNC+ISGEVP EPVVS  SGLLFE+RLIERHI DYGKCPVTGEPLT+DDIVPIKTG+I+K
Sbjct:     1 MNCAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDIVPIKTGEIIK 60

Query:    61 PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
             P+ L  ASIPG+LG FQNEWDGLMLSNFALEQQLHTARQELSHALYQHD+ACRVIARLKK
Sbjct:    61 PKTLHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKK 120

Query:   121 ERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAE 180
             ERDEAR LLA+ ER I PA   AVT+NAALSNGKRA  DE+LGP  KKL  GI+  II E
Sbjct:   121 ERDEARQLLAEVERHI-PAAPEAVTANAALSNGKRAAVDEELGPDAKKLCPGISAEIITE 179

Query:   181 LTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIAT 240
             LTDCNAALSQ+RKKRQ+P  LA ID LER+TQL+SHPLHKT+KPGI S+DI +SKDVIAT
Sbjct:   180 LTDCNAALSQKRKKRQIPQTLASIDTLERFTQLSSHPLHKTNKPGICSMDILHSKDVIAT 239

Query:   241 GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300
             GGVD  AVLFDRPSGQI++TL+GHSKKVTSVKFV + DL LT SADKTVR+W+   DGNY
Sbjct:   240 GGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNY 299

Query:   301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 360
              C +TL DH+AEV+AVTVH TNKYFV+ASLD TWCFYDLSSG CL QVSD   D +   Y
Sbjct:   300 ACGYTLNDHSAEVRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSD---DSKNVDY 356

Query:   361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420
             T+AAFHPDGLILGTGTS+++VKIWDVKSQANVAKFDGH G VTAISFSENGY+LATAA D
Sbjct:   357 TAAAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAED 416

Query:   421 GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIK 480
             GV+LWDLRKL+NF+SF S+D+    NSV+FD SGSYL +A++DI+VYQ ASVKA+WN IK
Sbjct:   417 GVRLWDLRKLRNFKSFLSADA----NSVEFDPSGSYLGIAASDIKVYQTASVKAEWNLIK 472

Query:   481 TFPDLSGTGAAS 492
             T PDLSGTG A+
Sbjct:   473 TLPDLSGTGKAT 484

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2018319 MAC3A "AT1G04510" [Arabidopsis thaliana (taxid:3702)]

 Score = 1942 (688.7 bits), Expect = 1.2e-200, P = 1.2e-200
 Identities = 370/492 (75%), Positives = 428/492 (86%)

Query:     1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
             MNC+ISGEVPEEPVVSK SGLL+EKRLI+ HI DYGKCPVTGEP T+DDIVPIKTGKIVK
Sbjct:     1 MNCAISGEVPEEPVVSKKSGLLYEKRLIQTHISDYGKCPVTGEPHTLDDIVPIKTGKIVK 60

Query:    61 PRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120
             P+PL  ASIPG+LG FQ EWD LMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
Sbjct:    61 PKPLHTASIPGLLGTFQTEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK 120

Query:   121 ERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAE 180
             ERDE+R LLA++ERQ+ PA     TSNAALSNGKR  +D + GP  KK+  GI+  +I E
Sbjct:   121 ERDESRQLLAEAERQL-PAAPEVATSNAALSNGKRGIDDGEQGPNAKKMRLGISAEVITE 179

Query:   181 LTDCNAALSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIAT 240
             LTDCNAALSQQRKKRQ+P  LA +DALE++TQL+SHPLHKT+KPGI S+DI +SKDVIAT
Sbjct:   180 LTDCNAALSQQRKKRQIPKTLASVDALEKFTQLSSHPLHKTNKPGIFSMDILHSKDVIAT 239

Query:   241 GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 300
             GG+DT AVLFDRPSGQI++TL+GHSKKVTS+KFV + DL LT S+DKTVR+W  SEDGNY
Sbjct:   240 GGIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNY 299

Query:   301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 360
               +HTLKDH+AEV+AVTVHATNKYFV+ASLD+TWCFYDLSSG+CL QV+DA  +     Y
Sbjct:   300 TSRHTLKDHSAEVRAVTVHATNKYFVSASLDSTWCFYDLSSGLCLAQVTDASEND--VNY 357

Query:   361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420
             T+AAFHPDGLILGTGT++++VKIWDVKSQANVAKF GH G +T+ISFSENGY+LATAA D
Sbjct:   358 TAAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHNGEITSISFSENGYFLATAALD 417

Query:   421 GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIK 480
             GV+LWDLRKLKNFR+F+  D+    NSV+FDHSGSYL +A++DIRV+Q ASVKA+WN IK
Sbjct:   418 GVRLWDLRKLKNFRTFDFPDA----NSVEFDHSGSYLGIAASDIRVFQAASVKAEWNPIK 473

Query:   481 TFPDLSGTGAAS 492
             T PDLSGTG A+
Sbjct:   474 TLPDLSGTGKAT 485

GO:0000166 "nucleotide binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0001510 "RNA methylation" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

UNIPROTKB|Q9UMS4 PRPF19 "Pre-mRNA-processing factor 19" [Homo sapiens (taxid:9606)]

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 231/496 (46%), Positives = 304/496 (61%)

Query:     3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPR 62
             CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+
Sbjct:     5 CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPK 64

Query:    63 PLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER 122
             P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE 
Sbjct:    65 PPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEV 124

Query:   123 DEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELT 182
               AR  LA  + Q       AV S+     G  A E  DLG        G+TP II +L 
Sbjct:   125 TAAREALATLKPQAGLIVPQAVPSSQPSVVG--AGEPMDLGEL-----VGMTPEIIQKLQ 177

Query:   183 DCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDIHYSK-DVI 238
             D    L+ +RKKR   VP  L   + L +Y Q+ASH  LH  S PGI++LD+  S  + I
Sbjct:   178 DKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKI 237

Query:   239 ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298
              TGG D N V+FD+ S QI+ TL GH+KKVTSV F    DL  + S D T+R+W      
Sbjct:   238 LTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVP--- 294

Query:   299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358
             N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G   
Sbjct:   295 NASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC-- 351

Query:   359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418
               T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA
Sbjct:   352 SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAA 411

Query:   419 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN 477
              D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W 
Sbjct:   412 DDSSVKLWDLRKLKNFKTLQL-DNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT 466

Query:   478 CIKTFPDLSG--TGAA 491
              I  F + SG  TG A
Sbjct:   467 EILHFTEHSGLTTGVA 482

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0001833 "inner cell mass cell proliferation" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0048026 "positive regulation of mRNA splicing, via spliceosome" evidence=IEA

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000974 "Prp19 complex" evidence=IDA

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IDA

GO:0016607 "nuclear speck" evidence=IDA

GO:0000245 "spliceosomal complex assembly" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|B2CCY7 PRPF19 "Nuclear matrix protein 200" [Sus scrofa (taxid:9823)]

 Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
 Identities = 230/496 (46%), Positives = 304/496 (61%)

Query:     3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPR 62
             CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+
Sbjct:     5 CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPK 64

Query:    63 PLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER 122
             P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE 
Sbjct:    65 PPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEV 124

Query:   123 DEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELT 182
               AR  LA  + Q       AV S+     G  A E  DLG        G+TP II +L 
Sbjct:   125 TAAREALATLKPQAGLIVPQAVPSSQPSVVG--AGEPMDLGEL-----VGMTPEIIQKLQ 177

Query:   183 DCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDIHYSK-DVI 238
             D    L+ +RKKR   VP  L   + L +Y Q+ASH  LH  S PGI++LD+  S  + I
Sbjct:   178 DKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKI 237

Query:   239 ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298
              TGG D N V+FD+ S QI+ TL GH+KKVTSV F    +L  + S D T+R+W      
Sbjct:   238 LTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVP--- 294

Query:   299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358
             N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G   
Sbjct:   295 NASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC-- 351

Query:   359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418
               T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA
Sbjct:   352 SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAA 411

Query:   419 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN 477
              D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W 
Sbjct:   412 DDSSVKLWDLRKLKNFKTLQL-DNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT 466

Query:   478 CIKTFPDLSG--TGAA 491
              I  F + SG  TG A
Sbjct:   467 EILHFTEHSGVTTGVA 482

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IEA

GO:0048026 "positive regulation of mRNA splicing, via spliceosome" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0001833 "inner cell mass cell proliferation" evidence=IEA

GO:0000974 "Prp19 complex" evidence=IEA

GO:0000245 "spliceosomal complex assembly" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

UNIPROTKB|Q08E38 PRPF19 "Pre-mRNA-processing factor 19" [Bos taurus (taxid:9913)]

 Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
 Identities = 230/496 (46%), Positives = 304/496 (61%)

Query:     3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPR 62
             CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+
Sbjct:     5 CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPK 64

Query:    63 PLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER 122
             P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE 
Sbjct:    65 PPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEV 124

Query:   123 DEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELT 182
               AR  LA  + Q       AV S+     G  A E  DLG        G+TP II +L 
Sbjct:   125 TAAREALATLKPQAGLIVPQAVPSSQPSVVG--AGEPMDLGEL-----VGMTPEIIQKLQ 177

Query:   183 DCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDIHYSK-DVI 238
             D    L+ +RKKR   VP  L   + L +Y Q+ASH  LH  S PGI++LD+  S  + I
Sbjct:   178 DKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKI 237

Query:   239 ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298
              TGG D N V+FD+ S QI+ TL GH+KKVTSV F    +L  + S D T+R+W      
Sbjct:   238 LTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVP--- 294

Query:   299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358
             N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G   
Sbjct:   295 NASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC-- 351

Query:   359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418
               T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA
Sbjct:   352 SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAA 411

Query:   419 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN 477
              D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W 
Sbjct:   412 DDSSVKLWDLRKLKNFKTLQL-DNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT 466

Query:   478 CIKTFPDLSG--TGAA 491
              I  F + SG  TG A
Sbjct:   467 EILHFTEHSGLTTGVA 482

GO:0000974 "Prp19 complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005819 "spindle" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IEA

GO:0048026 "positive regulation of mRNA splicing, via spliceosome" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0001833 "inner cell mass cell proliferation" evidence=IEA

GO:0000245 "spliceosomal complex assembly" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

ZFIN|ZDB-GENE-030131-263 prp19 "PRP19/PSO4 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 228/498 (45%), Positives = 306/498 (61%)

Query:     3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPR 62
             C+IS EVPE P VS  S  +FE+RLIE++I + G  P+ G+PL+ + ++ IK    ++P+
Sbjct:     5 CAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGADPINGQPLSEEQLIDIKVSHPIRPK 64

Query:    63 PLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER 122
               +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE 
Sbjct:    65 APSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEV 124

Query:   123 DEARSLLAQSERQ--IMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAE 180
               AR  LA  + Q  ++  ++   +  AA+  G  A E  +          G+TP II +
Sbjct:   125 TAAREALATLKPQAGLVAPQAAPASQPAAVGAGGEAMEVSE--------QVGMTPEIIQK 176

Query:   181 LTDCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDI-HYSKD 236
             L D    L+ +RKKR   VP  L   + L +Y Q+ SH  LH  S PGI+SLD+     +
Sbjct:   177 LQDKATVLTTERKKRGKTVPEELVRAEDLSKYRQVGSHAGLHSASVPGILSLDLCPTDTN 236

Query:   237 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 296
              + TGG D N V+FDR   QIV TL GH+KKV+SV +     +  + S+D T+RVW  + 
Sbjct:   237 KVLTGGADKNVVVFDRREEQIVATLKGHTKKVSSVIYHPAQAVVFSASSDSTIRVWSVT- 295

Query:   297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR 356
              GN  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G 
Sbjct:   296 GGN--CVQVVRAHESAVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDE-TAGC 352

Query:   357 PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT 416
                 T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G VTAI+FSENGYYLAT
Sbjct:   353 --ALTCAQFHPDGLIFGTGTGDSQIKIWDLKERTNVANFPGHSGPVTAIAFSENGYYLAT 410

Query:   417 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKAD 475
              A D  +KLWDLRKLKNF++  + D+     S+ FD SG+YLAV  +DIRVY    +   
Sbjct:   411 GAQDSSLKLWDLRKLKNFKTI-TLDNNYEVKSLVFDQSGTYLAVGGSDIRVY----ICKQ 465

Query:   476 WNCIKTFPDLSG--TGAA 491
             W+ +  F D SG  TG A
Sbjct:   466 WSEVLNFSDHSGLVTGVA 483

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IGI;IMP

UNIPROTKB|E2R8L3 PRPF19 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 229/496 (46%), Positives = 303/496 (61%)

Query:     3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPR 62
             CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+
Sbjct:    14 CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPK 73

Query:    63 PLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER 122
             P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE 
Sbjct:    74 PPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEV 133

Query:   123 DEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELT 182
               AR  LA  + Q       AV S+     G  A E  DLG        G+TP II +L 
Sbjct:   134 TAAREALATLKPQAGLIVPQAVPSSQPSVAG--AGEPMDLGEL-----VGMTPEIIQKLQ 186

Query:   183 DCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDI-HYSKDVI 238
             D    L+ +RKKR   VP  L   + L +Y Q+ASH  LH  S PGI++LD+     + I
Sbjct:   187 DKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPADTNKI 246

Query:   239 ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298
              TGG D N V+FD+ S QI+ TL GH+KKVTSV F    +L  + S D T+R+W      
Sbjct:   247 LTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVP--- 303

Query:   299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358
             N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G   
Sbjct:   304 NASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC-- 360

Query:   359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418
               T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA
Sbjct:   361 SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAA 420

Query:   419 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN 477
              D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W 
Sbjct:   421 DDSSVKLWDLRKLKNFKTLQL-DNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT 475

Query:   478 CIKTFPDLSG--TGAA 491
              I  F + SG  TG A
Sbjct:   476 EILHFTEHSGLTTGVA 491

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

MGI|MGI:106247 Prpf19 "PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 1021 (364.5 bits), Expect = 4.7e-103, P = 4.7e-103
 Identities = 229/496 (46%), Positives = 304/496 (61%)

Query:     3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPR 62
             CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+
Sbjct:     5 CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPK 64

Query:    63 PLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER 122
             P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE 
Sbjct:    65 PPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEV 124

Query:   123 DEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELT 182
               AR  LA  + Q       AV S+     G  A E  DLG        G+TP II +L 
Sbjct:   125 TAAREALATLKPQAGLIVPQAVPSSQPSVVG--AGEPMDLGEL-----VGMTPEIIQKLQ 177

Query:   183 DCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDIHYSK-DVI 238
             D    L+ +RKKR   VP  L   + L +Y Q+ASH  LH  S PGI++LD+  S  + I
Sbjct:   178 DKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKI 237

Query:   239 ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298
              TGG D N V+FD+ + QI+ TL GH+KKVTSV F    +L  + S D T+R+W      
Sbjct:   238 LTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVP--- 294

Query:   299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358
             N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G   
Sbjct:   295 NTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC-- 351

Query:   359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418
               T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA
Sbjct:   352 SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAA 411

Query:   419 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN 477
              D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W 
Sbjct:   412 DDSSVKLWDLRKLKNFKTLQL-DNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT 466

Query:   478 CIKTFPDLSG--TGAA 491
              I  F + SG  TG A
Sbjct:   467 EILHFTEHSGLTTGVA 482

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0000245 "spliceosomal complex assembly" evidence=ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0000974 "Prp19 complex" evidence=ISO

GO:0001833 "inner cell mass cell proliferation" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;ISA;IDA

GO:0005681 "spliceosomal complex" evidence=ISA;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016607 "nuclear speck" evidence=ISO

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0045665 "negative regulation of neuron differentiation" evidence=IDA

GO:0045666 "positive regulation of neuron differentiation" evidence=ISA

GO:0048026 "positive regulation of mRNA splicing, via spliceosome" evidence=IMP

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|708496 Prpf19 "PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 1021 (364.5 bits), Expect = 4.7e-103, P = 4.7e-103
 Identities = 229/496 (46%), Positives = 304/496 (61%)

Query:     3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPR 62
             CSIS EVPE P VS  S  ++E+RLIE++I + G  P+  +PL+ + ++ IK    ++P+
Sbjct:     5 CSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPK 64

Query:    63 PLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER 122
             P +A SIP +L   Q+EWD +ML +F L QQL T RQELSHALYQHDAACRVIARL KE 
Sbjct:    65 PPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEV 124

Query:   123 DEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELT 182
               AR  LA  + Q       AV S+     G  A E  DLG        G+TP II +L 
Sbjct:   125 TAAREALATLKPQAGLIVPQAVPSSQPSVVG--AGEPMDLGEL-----VGMTPEIIQKLQ 177

Query:   183 DCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDIHYSK-DVI 238
             D    L+ +RKKR   VP  L   + L +Y Q+ASH  LH  S PGI++LD+  S  + I
Sbjct:   178 DKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKI 237

Query:   239 ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 298
              TGG D N V+FD+ + QI+ TL GH+KKVTSV F    +L  + S D T+R+W      
Sbjct:   238 LTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVP--- 294

Query:   299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 358
             N  C   ++ H + V  +++HAT  Y +++S D  W F D+ +G  LT+V+D  T G   
Sbjct:   295 NTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDE-TSGC-- 351

Query:   359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 418
               T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA
Sbjct:   352 SLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAA 411

Query:   419 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN 477
              D  VKLWDLRKLKNF++ +  D+     S+ FD SG+YLA+   D+++Y    +   W 
Sbjct:   412 DDSSVKLWDLRKLKNFKTLQL-DNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWT 466

Query:   478 CIKTFPDLSG--TGAA 491
              I  F + SG  TG A
Sbjct:   467 EILHFTEHSGLTTGVA 482

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA;ISO

GO:0000245 "spliceosomal complex assembly" evidence=IEA;ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO;ISS

GO:0000974 "Prp19 complex" evidence=IEA;ISO;ISS

GO:0001833 "inner cell mass cell proliferation" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0005819 "spindle" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA;ISO

GO:0016607 "nuclear speck" evidence=IEA;ISO

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA;ISO

GO:0048026 "positive regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IEA;ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

GO:0005681 "spliceosomal complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94BR4	PR19A_ARATH	6, ., 3, ., 2, ., -	0.7520	0.9623	0.9273	no	no
Q5ZMA2	PRP19_CHICK	No assigned EC number	0.4507	0.9345	0.9326	yes	no
O22785	PR19B_ARATH	6, ., 3, ., 2, ., -	0.7682	0.9603	0.9219	yes	no
Q9UMS4	PRP19_HUMAN	No assigned EC number	0.4657	0.9345	0.9345	yes	no
Q9JMJ4	PRP19_RAT	No assigned EC number	0.4616	0.9345	0.9345	yes	no
Q99KP6	PRP19_MOUSE	No assigned EC number	0.4616	0.9345	0.9345	yes	no
Q7KWK5	PRP19_DICDI	No assigned EC number	0.3847	0.9027	0.8852	yes	no
Q9AV81	PUB72_ORYSJ	6, ., 3, ., 2, ., -	0.7520	0.9662	0.9240	yes	no
Q08E38	PRP19_BOVIN	No assigned EC number	0.4637	0.9345	0.9345	yes	no
Q10051	PRP19_CAEEL	No assigned EC number	0.4081	0.9027	0.9247	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	504
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-47
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-43
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-41
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-39
pfam08606	70	pfam08606, Prp19, Prp19/Pso4-like	1e-35
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-25
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-22
smart00504	63	smart00504, Ubox, Modified RING finger domain	5e-19
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-08
smart00320	40	smart00320, WD40, WD40 repeats	1e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	9e-07
smart00320	40	smart00320, WD40, WD40 repeats	8e-06
pfam04564	73	pfam04564, U-box, U-box domain	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	4e-05
COG5170	460	COG5170, CDC55, Serine/threonine protein phosphata	1e-04
pfam11789	57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  165 bits (420), Expect = 3e-47
 Identities = 78/262 (29%), Positives = 130/262 (49%), Gaps = 17/262 (6%)

Query: 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS 284
           G+  +       ++ATG  D    ++D  +G+++ TL GH+  V  V    +G    +GS
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS 70

Query: 285 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC 344
           +DKT+R+W        +C  TL  HT+ V +V      +   ++S D T   +D+ +G C
Sbjct: 71  SDKTIRLWDLETG---ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127

Query: 345 LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTA 404
           LT +      G  +   S AF PDG  + + + +  +K+WD+++   VA   GH G V +
Sbjct: 128 LTTLR-----GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182

Query: 405 ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463
           ++FS +G  L +++ DG +KLWDL   K   +    ++    NSV F   G  LA  S D
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPDGYLLASGSED 240

Query: 464 --IRVYQVASVKADWNCIKTFP 483
             IRV+ + +      C++T  
Sbjct: 241 GTIRVWDLRT----GECVQTLS 258

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  154 bits (391), Expect = 4e-43
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 13/234 (5%)

Query: 238 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297
           +A+G  D    L+D  +G+ V TL+GH+  V+SV F  +G +  + S DKT++VW     
Sbjct: 66  LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-- 123

Query: 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 357
               C  TL+ HT  V +V       +  ++S D T   +DL +G C+  ++     G  
Sbjct: 124 -TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-----GHT 177

Query: 358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 417
               S AF PDG  L + +S+  +K+WD+ +   +    GH   V +++FS +GY LA+ 
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237

Query: 418 AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQ 468
           + DG +++WDLR  +  ++           S+ +   G  LA  SAD  IR++ 
Sbjct: 238 SEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  148 bits (375), Expect = 6e-41
 Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 9/203 (4%)

Query: 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS 284
            + S+       ++++   D    ++D  +G+ +TTL GH+  V SV F  +G    + S
Sbjct: 95  YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154

Query: 285 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC 344
            D T+++W         C  TL  HT EV +V      +  +++S D T   +DLS+G C
Sbjct: 155 QDGTIKLWDLRTGK---CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211

Query: 345 LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTA 404
           L  +      G   G  S AF PDG +L +G+ +  +++WD+++   V    GH  +VT+
Sbjct: 212 LGTLR-----GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS 266

Query: 405 ISFSENGYYLATAAHDG-VKLWD 426
           +++S +G  LA+ + DG +++WD
Sbjct: 267 LAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  144 bits (365), Expect = 2e-39
 Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 17/228 (7%)

Query: 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT 317
             TL GH+  VT V F  +G L  TGS D T++VW        +   TLK HT  V+ V 
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG---ELLRTLKGHTGPVRDVA 58

Query: 318 VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377
             A   Y  + S D T   +DL +G C+  ++     G     +S AF PDG IL + + 
Sbjct: 59  ASADGTYLASGSSDKTIRLWDLETGECVRTLT-----GHTSYVSSVAFSPDGRILSSSSR 113

Query: 378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF 436
           +  +K+WDV++   +    GH   V +++FS +G ++A+++ DG +KLWDLR  K   + 
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL 173

Query: 437 ESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
                    NSV F   G  L  +S+D  I+++ +++ K    C+ T 
Sbjct: 174 TGHTG--EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK----CLGTL 215

Length = 289

>gnl|CDD|203998 pfam08606, Prp19, Prp19/Pso4-like

 Score =  126 bits (319), Expect = 1e-35
 Identities = 47/67 (70%), Positives = 51/67 (76%)

Query: 65  TAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDE 124
           TA SIP +L   QNEWD +ML  F L +QL   RQELSHALYQHDAACRVIARL KERDE
Sbjct: 2   TATSIPSLLSTLQNEWDAIMLETFELRKQLDQTRQELSHALYQHDAACRVIARLIKERDE 61

Query: 125 ARSLLAQ 131
           AR  LA+
Sbjct: 62  AREALAE 68

This regions is found specifically in PRP19-like protein. The region represented by this family covers the sequence implicated in self-interaction and a coiled-coiled motif. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly. Length = 70

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  117 bits (293), Expect = 2e-28
 Identities = 73/251 (29%), Positives = 124/251 (49%), Gaps = 16/251 (6%)

Query: 237 VIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQG 294
           ++A+  +D    L+D  + G+++ TL GHS+ VTS+ F  +G L  +GS  D T+++W  
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Query: 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGT 353
                     TL  HT  V ++           + S D T   +DLS+G  L       +
Sbjct: 186 RTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242

Query: 354 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN-VAKFDGHVGAVTAISFSENGY 412
           D        ++F PDG +L +G+S+  +++WD++S ++ +    GH  +V +++FS +G 
Sbjct: 243 DS-----VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297

Query: 413 YLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQ 468
            LA+ + DG V+LWDL   K   S      E P +S+ F   GS L    +D   IR++ 
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Query: 469 VASVKADWNCI 479
           + + K      
Sbjct: 358 LRTGKPLKTLE 368

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  108 bits (269), Expect = 3e-25
 Identities = 74/234 (31%), Positives = 111/234 (47%), Gaps = 14/234 (5%)

Query: 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFD-RPSGQIVTTLSGHSKKVTSVKFVTEG 277
           H  S     S D       +A+G  D    L+D R S  ++ TLSGHS  V SV F  +G
Sbjct: 241 HSDSVVSSFSPDGSL----LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG 296

Query: 278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA-SLDNTWCF 336
            L  +GS+D TVR+W   E G      TLK H   V +++        V+  S D T   
Sbjct: 297 KLLASGSSDGTVRLWD-LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 337 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD 396
           +DL +G  L       T        S +F PDG ++ +G+++  V++WD+ + + +   D
Sbjct: 356 WDLRTGKPLK------TLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Query: 397 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVD 449
           GH   VT++ FS +G  LA+ + D  ++LWDL+      SF        + S D
Sbjct: 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSD 463

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  101 bits (253), Expect = 6e-24
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 14/186 (7%)

Query: 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 361
            + TLK HT  V  V      K   T S D T   +DL +G  L  +      G      
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-----GHTGPVR 55

Query: 362 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG 421
             A   DG  L +G+S+  +++WD+++   V    GH   V++++FS +G  L++++ D 
Sbjct: 56  DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDK 115

Query: 422 -VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNC 478
            +K+WD+   K   +          NSV F   G+++A +S D  I+++ + +      C
Sbjct: 116 TIKVWDVETGKCLTTLR--GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT----GKC 169

Query: 479 IKTFPD 484
           + T   
Sbjct: 170 VATLTG 175

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 98.2 bits (243), Expect = 6e-22
 Identities = 70/233 (30%), Positives = 125/233 (53%), Gaps = 20/233 (8%)

Query: 260 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTV 318
            L GH   +TS+ F  +G+L L+GS+D T+++W    D       +L+  H + V  + +
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLW--DLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 319 HATNKYFV---TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375
            + +   +   ++SLD T   +DLS+   L +  +    G  E  TS AF PDG +L +G
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE----GHSESVTSLAFSPDGKLLASG 173

Query: 376 TSEA-LVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKN 432
           +S    +K+WD+++   ++   GH   V++++FS +G   +A+ + DG ++LWDL   K 
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 433 FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483
            RS  S  S++  +S  F   GS LA  S+D  IR++    +++  + ++T  
Sbjct: 234 LRSTLSGHSDSVVSS--FSPDGSLLASGSSDGTIRLW---DLRSSSSLLRTLS 281

Length = 466

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 80.4 bits (199), Expect = 5e-19
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 1  MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVK 60
            C IS EV ++PV+   SG  +E+  IE+ +L +G  PVTG+PLT +D++P      +K
Sbjct: 2  FLCPISLEVMKDPVILP-SGQTYERSAIEKWLLSHGTDPVTGQPLTHEDLIPNLA---LK 57

Query: 61 PRPLTA 66
                
Sbjct: 58 SAIQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query: 255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292
           G+++ TL GH+  VTSV F  +G+L  +GS D TVRVW
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 254 SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 292
           SG+++ TL GH+  VTSV F  +G    +GS D T+++W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 392 VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWD 426
           +    GH G VT+++FS +G  LA+ + DG V++WD
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 392 VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWD 426
           +    GH G VT+++FS +G YLA+ + DG +KLWD
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.3 bits (100), Expect = 8e-06
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 338
              TLK HT  V +V      KY  + S D T   +D
Sbjct: 4   LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 3  CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGK-CPVTGEPLTMDDIVP 52
            I+ E+ ++PV+   SG+ +++  IERH+L      P T EPLT D ++P
Sbjct: 7  DPITLELMKDPVILP-SGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIP 56

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 21/82 (25%), Positives = 40/82 (48%)

Query: 211 TQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTS 270
            +             ++S+       V+++G  D    L+D  +G ++  L GH+ +VTS
Sbjct: 358 LRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTS 417

Query: 271 VKFVTEGDLFLTGSADKTVRVW 292
           + F  +G    +GS+D T+R+W
Sbjct: 418 LDFSPDGKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 11/37 (29%), Positives = 14/37 (37%)

Query: 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 338
              TLK HT  V +V          + S D T   +D
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 221 TSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL 279
           T K GIVS   H S  +V+A+ G D    ++D   G+ V  +  HS ++TS+++  +G L
Sbjct: 125 TKKVGIVSF--HPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182

Query: 280 FLTGSADKTVRV 291
             T S DK + +
Sbjct: 183 LCTTSKDKKLNI 194

Length = 493

>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 52/297 (17%), Positives = 102/297 (34%), Gaps = 92/297 (30%)

Query: 221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDR-----PSGQIVTTLSGH----------- 264
           T    I +++   +   +ATG      VLF+R        +  T    H           
Sbjct: 24  TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLE 83

Query: 265 -SKKVTSVKFVTEGDL--FLTGSADKTVRVWQGSEDGN---------------------- 299
             +K+ ++++  +     FL  + DKT+++W+  E                         
Sbjct: 84  IEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTS 143

Query: 300 ------------------YDCKHTLKDHTAEVQAVTVHATNKYFVTAS--LDNTWCFYDL 339
                               C+     H   + +++ ++  +  ++A     N W   ++
Sbjct: 144 TKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNL-EI 202

Query: 340 SSGICLTQVSDAGTDGRPEGY-------TSAAFHP-DGLILGTGTSEALVKIWDVKSQA- 390
             G     V     D +P          TSA FHP    +    +S+  +K+ D++  A 
Sbjct: 203 IDG-SFNIV-----DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256

Query: 391 ---------------NVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKN 432
                          +V  F+  V +++   FS+NG Y+ +  +  VK+WD+   KN
Sbjct: 257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKN 313

Length = 460

>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 1  MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG--KCPVTG 42
          + C ++ +  EEPV SK    +FEK  I   +      KCPV G
Sbjct: 12 LTCPLTLQPFEEPVTSKKCNHVFEKDAILSMLRRNKTVKCPVAG 55

Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	504
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
PF08606	70	Prp19: Prp19/Pso4-like; InterPro: IPR013915 This r	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.98
PTZ00420	568	coronin; Provisional	99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG1274	933	consensus WD40 repeat protein [General function pr	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG4328	498	consensus WD40 protein [Function unknown]	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG2096	420	consensus WD40 repeat protein [General function pr	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG1188	376	consensus WD40 repeat protein [General function pr	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.82
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.8
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.78
COG2319	466	FOG: WD40 repeat [General function prediction only	99.78
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.75
KOG0649	325	consensus WD40 repeat protein [General function pr	99.75
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.75
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.74
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG2139	445	consensus WD40 repeat protein [General function pr	99.72
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.71
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.7
KOG1188	376	consensus WD40 repeat protein [General function pr	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
KOG1334	559	consensus WD40 repeat protein [General function pr	99.69
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.68
PRK03629	429	tolB translocation protein TolB; Provisional	99.68
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.67
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
KOG1310	758	consensus WD40 repeat protein [General function pr	99.66
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.66
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.65
KOG2321	703	consensus WD40 repeat protein [General function pr	99.65
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.64
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.63
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.63
PRK03629	429	tolB translocation protein TolB; Provisional	99.63
KOG1963	792	consensus WD40 repeat protein [General function pr	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
KOG4227	609	consensus WD40 repeat protein [General function pr	99.63
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.62
PRK02889	427	tolB translocation protein TolB; Provisional	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.61
PRK02889	427	tolB translocation protein TolB; Provisional	99.61
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.61
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.61
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.6
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.59
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.58
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.58
PRK05137	435	tolB translocation protein TolB; Provisional	99.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.58
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.57
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.56
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.56
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.53
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.53
KOG2139	445	consensus WD40 repeat protein [General function pr	99.52
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.51
PRK00178	430	tolB translocation protein TolB; Provisional	99.49
KOG4547	541	consensus WD40 repeat-containing protein [General	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
PRK04792	448	tolB translocation protein TolB; Provisional	99.46
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.46
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.45
KOG4547	541	consensus WD40 repeat-containing protein [General	99.45
PRK04792	448	tolB translocation protein TolB; Provisional	99.44
KOG1334	559	consensus WD40 repeat protein [General function pr	99.43
PRK01029	428	tolB translocation protein TolB; Provisional	99.42
KOG2315	566	consensus Predicted translation initiation factor	99.4
KOG2321	703	consensus WD40 repeat protein [General function pr	99.4
PRK01029	428	tolB translocation protein TolB; Provisional	99.39
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.38
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.36
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.35
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.35
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.34
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.34
KOG2314	698	consensus Translation initiation factor 3, subunit	99.34
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.34
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.33
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.32
KOG2315	566	consensus Predicted translation initiation factor	99.3
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	99.28
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.26
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.25
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.25
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.25
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.24
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.23
COG4946	668	Uncharacterized protein related to the periplasmic	99.23
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.19
KOG2314	698	consensus Translation initiation factor 3, subunit	99.18
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.16
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.15
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.14
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.12
PRK04043	419	tolB translocation protein TolB; Provisional	99.12
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.12
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.11
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.11
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.1
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.08
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.07
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.06
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.06
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.05
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.05
PRK04043	419	tolB translocation protein TolB; Provisional	99.04
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.97
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.97
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.96
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.96
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.95
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.94
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.93
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.93
COG4946	668	Uncharacterized protein related to the periplasmic	98.92
KOG2695	425	consensus WD40 repeat protein [General function pr	98.92
KOG2695	425	consensus WD40 repeat protein [General function pr	98.91
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.9
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.87
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.87
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.86
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.85
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.84
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.83
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.81
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.76
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.75
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.72
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.67
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.66
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.66
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.64
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.63
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.6
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.55
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.54
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.5
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.45
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.44
KOG3621	726	consensus WD40 repeat-containing protein [General	98.4
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.4
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.37
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.35
KOG3621	726	consensus WD40 repeat-containing protein [General	98.35
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.34
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.34
PRK02888	635	nitrous-oxide reductase; Validated	98.34
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.33
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.28
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.28
PRK02888	635	nitrous-oxide reductase; Validated	98.27
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.26
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.24
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.23
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	98.22
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.22
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.2
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.17
COG3391	381	Uncharacterized conserved protein [Function unknow	98.16
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.16
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.14
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.14
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.13
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.09
COG3391	381	Uncharacterized conserved protein [Function unknow	98.07
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.06
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.04
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.0
KOG3039	303	consensus Uncharacterized conserved protein [Funct	98.0
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	97.96
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.96
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.95
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.93
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.9
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.84
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.76
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.75
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.68
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.65
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	97.64
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.63
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.63
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	97.61
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.59
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.57
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.55
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.55
KOG2395	644	consensus Protein involved in vacuole import and d	97.54
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.53
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.53
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.48
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.46
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.45
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.43
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.43
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.42
PRK13616	591	lipoprotein LpqB; Provisional	97.41
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.4
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.4
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.4
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.37
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.32
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.31
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.3
PHA02713	557	hypothetical protein; Provisional	97.28
PF04641	260	Rtf2: Rtf2 RING-finger	97.28
KOG2979	262	consensus Protein involved in DNA repair [General	97.27
PHA02713	557	hypothetical protein; Provisional	97.26
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.22
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.21
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.2
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	97.19
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.17
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.14
PRK13616	591	lipoprotein LpqB; Provisional	97.14
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.12
KOG2444	238	consensus WD40 repeat protein [General function pr	97.09
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.06
KOG3039	303	consensus Uncharacterized conserved protein [Funct	97.03
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.99
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.99
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.95
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.91
PF04641	260	Rtf2: Rtf2 RING-finger	96.87
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.87
PRK10115	686	protease 2; Provisional	96.86
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.85
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	96.84
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.74
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.74
PHA03098	534	kelch-like protein; Provisional	96.73
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.72
KOG2395	644	consensus Protein involved in vacuole import and d	96.69
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.69
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	96.69
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.68
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	96.67
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.66
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.64
PHA03098	534	kelch-like protein; Provisional	96.62
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.6
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.54
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.51
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.45
KOG2444	238	consensus WD40 repeat protein [General function pr	96.45
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.43
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.4
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.36
PHA02790	480	Kelch-like protein; Provisional	96.34
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.3
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	96.27
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.21
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.21
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.2
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.17
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.15
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.14
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.07
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.06
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.99
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.91
PRK13684	334	Ycf48-like protein; Provisional	95.9
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.8
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	95.71
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	95.68
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.63
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.61
COG5276	370	Uncharacterized conserved protein [Function unknow	95.56
KOG3113	293	consensus Uncharacterized conserved protein [Funct	95.47
PRK13684	334	Ycf48-like protein; Provisional	95.37
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	95.32
COG5276	370	Uncharacterized conserved protein [Function unknow	95.31
PF14634	44	zf-RING_5: zinc-RING finger domain	95.26
COG5167	776	VID27 Protein involved in vacuole import and degra	95.13
PF06416	113	DUF1076: Protein of unknown function (DUF1076); In	95.07
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	95.01
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	94.94
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.87
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	94.81
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.76
KOG2660	331	consensus Locus-specific chromosome binding protei	94.74
COG5167	776	VID27 Protein involved in vacuole import and degra	94.72
KOG0297	391	consensus TNF receptor-associated factor [Signal t	94.63
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.47
PRK10115	686	protease 2; Provisional	94.46
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	94.46
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.45
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.23
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	94.17
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.16
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.11
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.04
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	94.02
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	93.99
PLN02153	341	epithiospecifier protein	93.84
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.81
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.79
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.75
KOG2247	615	consensus WD40 repeat-containing protein [General	93.55
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.54
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.44
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.35
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.22
PHA02790	480	Kelch-like protein; Provisional	93.09
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.07
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.86
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.8
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.8
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.6
PF07795	214	DUF1635: Protein of unknown function (DUF1635); In	92.59
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.57

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=5.9e-109  Score=751.60  Aligned_cols=486  Identities=53%  Similarity=0.798  Sum_probs=438.1

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccccCCCccCCCCCCCCChhhHHHhhhhhh
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAASIPGMLGMFQNEW   80 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~sip~ll~~~q~Ew   80 (504)
                      |+|+||||+|++|||||+||++||||||||||.++|+||||++||+++|||+||.+..++||||+++|||+||++|||||
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~~~v~pk~~satSIPalL~~lQdEW   80 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVPAQVRPKPPSATSIPALLKTLQDEW   80 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeeccccccccCCCCCccchHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999899999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhHhhhcccchhHHHHHHhcchhHHHHHHHHHhhhcCcccccccchhhhhcCCCCCCCCC
Q 010669           81 DGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMPAESTAVTSNAALSNGKRAPEDE  160 (504)
Q Consensus        81 da~~le~~~lr~~l~~~~~els~aly~~daa~rv~a~l~kErd~ar~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (504)
                      |++|||+|+||+||+.+|||||||||||||||||||||.|||++||++|+++..+.+.............+...     .
T Consensus        81 DavML~~F~LRqqL~ttrQELShaLYqhDAAcrViaRL~kE~~eareaLa~~~~qa~a~~peav~~~~~~s~~~-----v  155 (506)
T KOG0289|consen   81 DAVMLESFTLRQQLQTTRQELSHALYQHDAACRVIARLTKERDEAREALAKLSPQAGAIVPEAVPSLAQSSVVG-----V  155 (506)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccccccchhh-----h
Confidence            99999999999999999999999999999999999999999999999999999887754322211111111111     1


Q ss_pred             cCCcCccccCCCCCHHHHHHHHHHHHHHHHhhccc--CCCCCCCChhHHhhccccceec-cccCCCCCeEEEEeccCCCE
Q 010669          161 DLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKR--QVPPALAPIDALERYTQLASHP-LHKTSKPGIVSLDIHYSKDV  237 (504)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~I~~~~~s~~~~~  237 (504)
                      +++....  ..|+.+.++..+.+....|++.||+|  +.|+.++..+.+..|.+...+. +|.....+|.++...+..+.
T Consensus       156 a~ge~~d--~~g~s~~i~~~l~~~aq~ls~~rKkrg~k~p~~la~~d~~~~~~q~ash~gLH~t~~pgi~ald~~~s~~~  233 (506)
T KOG0289|consen  156 AAGESED--QPGLSPEIIQKLEDKAQVLSQERKKRGKKLPEKLATTDELSCLLQVASHTGLHSTSTPGITALDIIPSSSK  233 (506)
T ss_pred             hcCCccc--cccCCHHHHHHHHHHHHHHHHHhhhccccCCcccccHHHHHHHHhcCCCcceeccCCCCeeEEeecCCCCc
Confidence            1111111  24789999999999999999999999  8899999999999999999998 88888999999999998889


Q ss_pred             EEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEE
Q 010669          238 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT  317 (504)
Q Consensus       238 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~  317 (504)
                      +++|+.|..+.++|...++.+.+++||...|+.+.|+++...+++++.|..|+||.....   .+......|..+|+.+.
T Consensus       234 ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~---s~~~~~~~h~~~V~~ls  310 (506)
T KOG0289|consen  234 ILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS---SEPTSSRPHEEPVTGLS  310 (506)
T ss_pred             ceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc---cCccccccccccceeee
Confidence            999999999999999999999999999999999999999999999999999999998765   45566678999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC
Q 010669          318 VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG  397 (504)
Q Consensus       318 ~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~  397 (504)
                      .||.|.||++++.||++.+.|++++..+......   ...-.+++.+|||||.+|++|..||.|+|||++++..+..|.+
T Consensus       311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg  387 (506)
T KOG0289|consen  311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE---TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG  387 (506)
T ss_pred             eccCCcEEEEecCCceEEEEEccCCcEEEEEeec---cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence            9999999999999999999999999988877632   3345799999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccc
Q 010669          398 HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADW  476 (504)
Q Consensus       398 ~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~  476 (504)
                      |.++|..++|+.||+||+++++|+ |++||+|+.+.++++.... ..++.++.|++.|.||+.+|.+++||.+.+.++.|
T Consensus       388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W  466 (506)
T KOG0289|consen  388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW  466 (506)
T ss_pred             CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc-cccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence            999999999999999999999999 9999999999999998765 34899999999999999999999999998888999


Q ss_pred             eeEEEccCCCCCCceeEEEEeecCcc
Q 010669          477 NCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       477 ~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .++..+..|  .+..+++.|-..-|.
T Consensus       467 ~~~~~~~~~--sg~st~v~Fg~~aq~  490 (506)
T KOG0289|consen  467 TEIKELADH--SGLSTGVRFGEHAQY  490 (506)
T ss_pred             eeeehhhhc--ccccceeeecccceE
Confidence            999999998  677888888665543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.9e-49  Score=358.78  Aligned_cols=303  Identities=27%  Similarity=0.462  Sum_probs=265.8

Q ss_pred             HHHHHHHHhhcccCCCCCC---CChhHHhhccccceeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE
Q 010669          183 DCNAALSQQRKKRQVPPAL---APIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT  259 (504)
Q Consensus       183 ~~~~~l~~~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~  259 (504)
                      .+...|...|..+..|..-   .....++............+-..+|..+.|+.+++.|+||+.+|.++||+..+...+.
T Consensus       132 Ra~~Rl~k~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~  211 (459)
T KOG0272|consen  132 RAKLRLQKARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ  211 (459)
T ss_pred             HHHHHHHHHHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE
Confidence            3344455555555554431   1122233222222233345567899999999999999999999999999999999999


Q ss_pred             EcccCccceeEEEEeeC--CCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEE
Q 010669          260 TLSGHSKKVTSVKFVTE--GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY  337 (504)
Q Consensus       260 ~~~~h~~~v~~l~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iw  337 (504)
                      +|.+|...|.++.|+|.  +..+++|+.||++++|++.+.   .++..+.+|...|..++|||+|++|++++.|.++++|
T Consensus       212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW  288 (459)
T KOG0272|consen  212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW  288 (459)
T ss_pred             EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC---cchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence            99999999999999996  558999999999999999886   6788899999999999999999999999999999999


Q ss_pred             ECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEE
Q 010669          338 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA  417 (504)
Q Consensus       338 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~  417 (504)
                      |++++..+....     +|...|.+++|+|||.++++|+.|..-+|||+|+++++..+.+|..+|.+|.|+|||+.|++|
T Consensus       289 D~~tk~ElL~QE-----GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg  363 (459)
T KOG0272|consen  289 DLETKSELLLQE-----GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG  363 (459)
T ss_pred             ccccchhhHhhc-----ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeec
Confidence            999988776654     899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC-CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeE
Q 010669          418 AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASF  493 (504)
Q Consensus       418 ~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~-~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~  493 (504)
                      +.|+ ++|||++..+.+.++..|  ..-|+.+.|+| .|.+|++++.|  ++||.-    .+|.+++++.||  ++.|.+
T Consensus       364 s~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~----~~~~~~ksLaGH--e~kV~s  435 (459)
T KOG0272|consen  364 SSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEGYFLVTASYDNTVKIWST----RTWSPLKSLAGH--EGKVIS  435 (459)
T ss_pred             CCCCcEEEeeecccccceecccc--cchhhheEecccCCeEEEEcccCcceeeecC----CCcccchhhcCC--ccceEE
Confidence            9998 999999999998888776  77899999998 78999999999  999996    899999999999  999999


Q ss_pred             EEEeecCc
Q 010669          494 LFLFVLGQ  501 (504)
Q Consensus       494 l~~~~~g~  501 (504)
                      ++++++|+
T Consensus       436 ~Dis~d~~  443 (459)
T KOG0272|consen  436 LDISPDSQ  443 (459)
T ss_pred             EEeccCCc
Confidence            99999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-44  Score=326.40  Aligned_cols=268  Identities=23%  Similarity=0.391  Sum_probs=240.8

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|..+|.|+.|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.|++|+.||+|++||..+++
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~  190 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ  190 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             CcceeEEeccCCcCeEEEEEcc-----CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHA-----TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p-----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                        .....+.+|...|++++|.|     ..++|++++.||.|+|||+..+.++..+.     +|..+|+|+.|--+| +++
T Consensus       191 --~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-----gHT~~VTCvrwGG~g-liy  262 (480)
T KOG0271|consen  191 --QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-----GHTASVTCVRWGGEG-LIY  262 (480)
T ss_pred             --cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-----cCccceEEEEEcCCc-eEE
Confidence              55678899999999999977     46799999999999999999999888876     788889999887654 677


Q ss_pred             EEeCCCcEEEEEcCCCce--------------------------------------------------------------
Q 010669          374 TGTSEALVKIWDVKSQAN--------------------------------------------------------------  391 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~--------------------------------------------------------------  391 (504)
                      +|+.|++|++|+...|.+                                                              
T Consensus       263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg  342 (480)
T KOG0271|consen  263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG  342 (480)
T ss_pred             ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence            888888888887544322                                                              


Q ss_pred             -----------------eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669          392 -----------------VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       392 -----------------~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~  453 (504)
                                       +..+.+|..-|+.+.||||++++++++-|. |++||.++|+.+.+|.+|  -..|+.++|+.|
T Consensus       343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH--v~~VYqvawsaD  420 (480)
T KOG0271|consen  343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH--VAAVYQVAWSAD  420 (480)
T ss_pred             cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc--cceeEEEEeccC
Confidence                             222345677799999999999999999998 999999999999999887  689999999999


Q ss_pred             CCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          454 GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       454 g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .++|++|+.|  ++||++    ++.+....++||  .+.|.+++++|+|+.
T Consensus       421 sRLlVS~SkDsTLKvw~V----~tkKl~~DLpGh--~DEVf~vDwspDG~r  465 (480)
T KOG0271|consen  421 SRLLVSGSKDSTLKVWDV----RTKKLKQDLPGH--ADEVFAVDWSPDGQR  465 (480)
T ss_pred             ccEEEEcCCCceEEEEEe----eeeeecccCCCC--CceEEEEEecCCCce
Confidence            9999999999  999999    778889999999  889999999999974

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.4e-42  Score=300.31  Aligned_cols=275  Identities=21%  Similarity=0.315  Sum_probs=255.1

Q ss_pred             eeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669          215 SHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       215 ~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~  294 (504)
                      .....++|.+.|.++.|++|+++|++++.||.+.|||.-+...+..+.-....|..++|+|.|+++++|+-|+...||++
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            34578899999999999999999999999999999999998888888888999999999999999999999999999999


Q ss_pred             CCC---CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCC
Q 010669          295 SED---GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGL  370 (504)
Q Consensus       295 ~~~---~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~  370 (504)
                      .+.   +.....+.+.+|.+.+.|+.|-+ ..+|+++|.|.++.+||+++++.+..+.     +|...|.+++++| +++
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~-----GH~gDV~slsl~p~~~n  200 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH-----GHTGDVMSLSLSPSDGN  200 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec-----CCcccEEEEecCCCCCC
Confidence            854   23355677889999999999986 6789999999999999999999998886     8889999999999 999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEE
Q 010669          371 ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVD  449 (504)
Q Consensus       371 ~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~  449 (504)
                      .|++|+-|+..++||+|.+.+++.|.+|.+.|+.++|.|+|.-+++|++|+ .++||+|..+.+..+.......+|++++
T Consensus       201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~  280 (343)
T KOG0286|consen  201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA  280 (343)
T ss_pred             eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE
Confidence            999999999999999999999999999999999999999999999999998 9999999999998888766678999999


Q ss_pred             ECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          450 FDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       450 ~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      |+.+|++|++|..|  +.|||.    -.++.+..+.+|  ++.|+++.++|+|-
T Consensus       281 FS~SGRlLfagy~d~~c~vWDt----lk~e~vg~L~GH--eNRvScl~~s~DG~  328 (343)
T KOG0286|consen  281 FSKSGRLLFAGYDDFTCNVWDT----LKGERVGVLAGH--ENRVSCLGVSPDGM  328 (343)
T ss_pred             EcccccEEEeeecCCceeEeec----cccceEEEeecc--CCeeEEEEECCCCc
Confidence            99999999999888  999997    678889999999  99999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.8e-41  Score=306.09  Aligned_cols=246  Identities=25%  Similarity=0.414  Sum_probs=231.4

Q ss_pred             cceeccccCCCCCeEEEEeccC--CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEE
Q 010669          213 LASHPLHKTSKPGIVSLDIHYS--KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR  290 (504)
Q Consensus       213 ~~~~~~~~~~~~~I~~~~~s~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~  290 (504)
                      .+....+.+|.+.|.++.|+|.  +..+|+|+.||++++|++.+...+..+.+|...|..++|+|+|++|.|++.|.+-+
T Consensus       207 ~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWR  286 (459)
T KOG0272|consen  207 CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWR  286 (459)
T ss_pred             cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchh
Confidence            3445567899999999999997  56899999999999999999899999999999999999999999999999999999


Q ss_pred             EEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669          291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~  370 (504)
                      +||+.+.   .......||...|.+++|+|||..+++|+.|..-+|||+++|.++..+.     +|...|..++|+|+|.
T Consensus       287 lWD~~tk---~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-----gH~k~I~~V~fsPNGy  358 (459)
T KOG0272|consen  287 LWDLETK---SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-----GHIKEILSVAFSPNGY  358 (459)
T ss_pred             hcccccc---hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-----ccccceeeEeECCCce
Confidence            9999986   4555567999999999999999999999999999999999999998886     7889999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669          371 ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV  448 (504)
Q Consensus       371 ~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i  448 (504)
                      .||+|+.|++++|||++..+.+.++.+|..-|+.|.|+| .|++|++++.|+ +++|..++..+++++.+|  .+.|.++
T Consensus       359 ~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH--e~kV~s~  436 (459)
T KOG0272|consen  359 HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH--EGKVISL  436 (459)
T ss_pred             EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC--ccceEEE
Confidence            999999999999999999999999999999999999999 799999999998 999999999999999887  7899999


Q ss_pred             EECCCCCEEEEEeCc--EEEEE
Q 010669          449 DFDHSGSYLAVASAD--IRVYQ  468 (504)
Q Consensus       449 ~~~~~g~~l~~~~~d--i~vw~  468 (504)
                      .++++++++++++.|  +++|.
T Consensus       437 Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  437 DISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EeccCCceEEEeccCceeeecc
Confidence            999999999999999  99995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-40  Score=296.90  Aligned_cols=244  Identities=25%  Similarity=0.416  Sum_probs=216.7

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce-EEEcccCccceeEEEEee-----CCCEEEEEeCCCcEEEE
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVT-----EGDLFLTGSADKTVRVW  292 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~-----~~~~l~s~s~dg~i~iw  292 (504)
                      -++|+.-|.|++|+|||+.||+|+.||+|++||.++|+. ...+.+|...|++++|.|     ..++|++++.||+|+||
T Consensus       153 ~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIW  232 (480)
T KOG0271|consen  153 CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW  232 (480)
T ss_pred             ecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEE
Confidence            468999999999999999999999999999999998865 567899999999999975     56689999999999999


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC--------------------
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG--------------------  352 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--------------------  352 (504)
                      |+..+   .++..+.+|+.+|+|+.|-- ..+|++||.|++|++|+...|.+...+..+.                    
T Consensus       233 d~~~~---~~~~~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~  308 (480)
T KOG0271|consen  233 DTKLG---TCVRTLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD  308 (480)
T ss_pred             EccCc---eEEEEeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence            99876   78999999999999999963 4589999999999999986654322221110                    


Q ss_pred             ------------------------------------------------------CCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          353 ------------------------------------------------------TDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       353 ------------------------------------------------------~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                                                                            ..+|...|+.+.|+||++++|+++.|
T Consensus       309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD  388 (480)
T KOG0271|consen  309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD  388 (480)
T ss_pred             cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc
Confidence                                                                  13566778999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEE
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL  457 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l  457 (504)
                      ..|++||.++|+.+.+|++|-++|+.++|+.|.++|++|+.|. +++||+++.+....+.+|  ...|.++.|+|||..+
T Consensus       389 kSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh--~DEVf~vDwspDG~rV  466 (480)
T KOG0271|consen  389 KSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH--ADEVFAVDWSPDGQRV  466 (480)
T ss_pred             cceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC--CceEEEEEecCCCcee
Confidence            9999999999999999999999999999999999999999998 999999998887777665  7899999999999999


Q ss_pred             EEEeCc--EEEEE
Q 010669          458 AVASAD--IRVYQ  468 (504)
Q Consensus       458 ~~~~~d--i~vw~  468 (504)
                      ++|+.|  +++|.
T Consensus       467 ~sggkdkv~~lw~  479 (480)
T KOG0271|consen  467 ASGGKDKVLRLWR  479 (480)
T ss_pred             ecCCCceEEEeec
Confidence            999999  88884

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6e-39  Score=278.44  Aligned_cols=242  Identities=24%  Similarity=0.402  Sum_probs=217.8

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      .+.+|...|..+..++||++.++++.|+++++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|++.. 
T Consensus        58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-  136 (315)
T KOG0279|consen   58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-  136 (315)
T ss_pred             eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-
Confidence            4667889999999999999999999999999999999999999999999999999999999999999999999999887 


Q ss_pred             CCcceeEEeccC--CcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669          298 GNYDCKHTLKDH--TAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       298 ~~~~~~~~~~~h--~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                         .+..++..+  .+.|.|+.|+|+  ..+|++++.|++|++||+++.+....+.     +|...++.++++|||.+.+
T Consensus       137 ---~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-----gh~~~v~t~~vSpDGslca  208 (315)
T KOG0279|consen  137 ---VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-----GHSGYVNTVTVSPDGSLCA  208 (315)
T ss_pred             ---cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-----cccccEEEEEECCCCCEEe
Confidence               455665544  789999999998  6799999999999999999988777665     7889999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCC-------CCCee
Q 010669          374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDS-------ETPTN  446 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~-------~~~v~  446 (504)
                      +|+.||.+.+||++.++.+..+. |...|.+++|+|+.++|+.+...+|+|||+.+...+..+.....       .....
T Consensus       209 sGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl  287 (315)
T KOG0279|consen  209 SGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICL  287 (315)
T ss_pred             cCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEE
Confidence            99999999999999999988877 77899999999999999999888899999999888776654321       22356


Q ss_pred             EEEECCCCCEEEEEeCc--EEEEEe
Q 010669          447 SVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       447 ~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      +++|+++|+.|++|-.|  |++|.+
T Consensus       288 slaws~dG~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  288 SLAWSADGQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             EEEEcCCCcEEEeeecCCcEEEEEe
Confidence            78999999999999888  999998

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3e-38  Score=274.10  Aligned_cols=273  Identities=24%  Similarity=0.380  Sum_probs=236.3

Q ss_pred             ccccCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCC-----CCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEE
Q 010669          217 PLHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRP-----SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR  290 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~-----~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~  290 (504)
                      ....+|.+.|+.++..+. .+.+++++.|..+.+|++.     .|..++.+.||...|..+..+++|++.++++.|++++
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr   88 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR   88 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence            346789999999999887 4689999999999999865     4677899999999999999999999999999999999


Q ss_pred             EEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC--
Q 010669          291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--  368 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd--  368 (504)
                      +||+.++   +..+.|.+|...|.+++|++++..+++|+.|.+|++|++-... ..++..   ..+...|+|+.|+|+  
T Consensus        89 lWDl~~g---~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~---~~~~~WVscvrfsP~~~  161 (315)
T KOG0279|consen   89 LWDLATG---ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHE---DSHREWVSCVRFSPNES  161 (315)
T ss_pred             EEEecCC---cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEec---CCCcCcEEEEEEcCCCC
Confidence            9999986   7888899999999999999999999999999999999987654 444432   133689999999996  


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeE
Q 010669          369 GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS  447 (504)
Q Consensus       369 g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~  447 (504)
                      ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||.++++|+.|+ +.+||++.++.+..+..   ...|.+
T Consensus       162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a---~~~v~s  238 (315)
T KOG0279|consen  162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---FDIVNS  238 (315)
T ss_pred             CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---CCeEee
Confidence            78999999999999999999999999999999999999999999999999999 99999999999877765   578999


Q ss_pred             EEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCC-------CCCCceeEEEEeecCccc
Q 010669          448 VDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL-------SGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       448 i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h-------~~~~~v~~l~~~~~g~~~  503 (504)
                      ++|+|+...|+.+... |+|||+    ....++..+...       .......+++++++||++
T Consensus       239 l~fspnrywL~~at~~sIkIwdl----~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL  298 (315)
T KOG0279|consen  239 LCFSPNRYWLCAATATSIKIWDL----ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL  298 (315)
T ss_pred             EEecCCceeEeeccCCceEEEec----cchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence            9999999888888777 999999    444455444321       012345778999999864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=9.3e-39  Score=313.27  Aligned_cols=240  Identities=30%  Similarity=0.500  Sum_probs=222.5

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC-------------------------------ceEEEcccCccceeEE
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-------------------------------QIVTTLSGHSKKVTSV  271 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-------------------------------~~~~~~~~h~~~v~~l  271 (504)
                      ...++|+.|++|+.+||.|-.|..|++|.+...                               ....++.||.++|..+
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            467999999999999999999999999987631                               1234567999999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 010669          272 KFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA  351 (504)
Q Consensus       272 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  351 (504)
                      .|+|+.++|++++.|+++|+|.+.+.   .+...+++|..+|+++.|+|-|-||+++|.|++-++|......+.+.+.  
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa--  532 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA--  532 (707)
T ss_pred             eecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc--
Confidence            99999999999999999999999875   7888889999999999999999999999999999999999888777775  


Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC
Q 010669          352 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL  430 (504)
Q Consensus       352 ~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~  430 (504)
                         +|-+.|.|+.|||+.+++++|+.|.+||+||+.+|..++.|.||.++|++++|||+|++|++|+.|+ |.+||+.++
T Consensus       533 ---ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~  609 (707)
T KOG0263|consen  533 ---GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG  609 (707)
T ss_pred             ---ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence               7888999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             cceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeecc
Q 010669          431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV  472 (504)
Q Consensus       431 ~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~  472 (504)
                      ..+..+..|  .+.|.++.|+.+|..||+||.|  |++||+...
T Consensus       610 ~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  610 SLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999887  7899999999999999999999  999998543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.4e-36  Score=265.30  Aligned_cols=235  Identities=22%  Similarity=0.449  Sum_probs=216.7

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC------ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ..-|..++|+|.|+++|+|+-|+...||++.+.      ...+.+.+|++.+.|+.|.+ ...|++++.|.+..+||+++
T Consensus        97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~  175 (343)
T KOG0286|consen   97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET  175 (343)
T ss_pred             ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc
Confidence            457999999999999999999999999998854      45667899999999999987 45799999999999999999


Q ss_pred             CCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      +   +.+..|.+|.+.|.+++++| +++.|++|+.|+..++||++.+.+++.+.     +|...|+++.|+|+|.-|++|
T Consensus       176 g---~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-----ghesDINsv~ffP~G~afatG  247 (343)
T KOG0286|consen  176 G---QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-----GHESDINSVRFFPSGDAFATG  247 (343)
T ss_pred             c---eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec-----ccccccceEEEccCCCeeeec
Confidence            7   78889999999999999999 99999999999999999999999999987     888999999999999999999


Q ss_pred             eCCCcEEEEEcCCCceeeeeeC--CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          376 TSEALVKIWDVKSQANVAKFDG--HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      +.|++.++||+|..+.+..|..  ...+|++++||..|++|++|..|. +.+||.-+++.+-.+.+|  ...|.++..+|
T Consensus       248 SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH--eNRvScl~~s~  325 (343)
T KOG0286|consen  248 SDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH--ENRVSCLGVSP  325 (343)
T ss_pred             CCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--CCeeEEEEECC
Confidence            9999999999999998888863  345899999999999999998887 999999999988888877  78999999999


Q ss_pred             CCCEEEEEeCc--EEEEE
Q 010669          453 SGSYLAVASAD--IRVYQ  468 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~  468 (504)
                      ||.-+++|+.|  ++||.
T Consensus       326 DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  326 DGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCcEEEecchhHheeecC
Confidence            99999999999  99994

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-37  Score=277.63  Aligned_cols=267  Identities=21%  Similarity=0.407  Sum_probs=250.2

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|..+|+.+-|+|+-.++++++.|++|++||..++++...++||.+.|.+++|+..|+++++++.|=.+++||..+. 
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-  182 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-  182 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-
Confidence            4568999999999999999999999999999999999999999999999999999999999999999999999998763 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                       +.+++.+.+|...|.++.|-|.|++|++++.|.+|+.|++.++.+++++.     +|...|..++.+.||.++++++.|
T Consensus       183 -~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-----~h~ewvr~v~v~~DGti~As~s~d  256 (406)
T KOG0295|consen  183 -FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-----GHSEWVRMVRVNQDGTIIASCSND  256 (406)
T ss_pred             -HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-----CchHhEEEEEecCCeeEEEecCCC
Confidence             57888888999999999999999999999999999999999999999987     778899999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCC---------------CcEEEEEeCCc-EEEEEcCCCcceeeeecCCCC
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSEN---------------GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE  442 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---------------g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~  442 (504)
                      .+|++|-+.++++...+..|..+|.|++|.|.               |.++++++.|+ |++||+.++.++.++.+|  .
T Consensus       257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh--d  334 (406)
T KOG0295|consen  257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH--D  334 (406)
T ss_pred             ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc--c
Confidence            99999999999999999999999999999762               35899999998 999999999999999887  6


Q ss_pred             CCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          443 TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       443 ~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      ..|..++|+|.|+||+++.+|  +++||+    ++.+++++++.|  +..|++++|..+-
T Consensus       335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl----~~~~cmk~~~ah--~hfvt~lDfh~~~  388 (406)
T KOG0295|consen  335 NWVRGVAFSPGGKYILSCADDKTLRVWDL----KNLQCMKTLEAH--EHFVTSLDFHKTA  388 (406)
T ss_pred             ceeeeeEEcCCCeEEEEEecCCcEEEEEe----ccceeeeccCCC--cceeEEEecCCCC
Confidence            899999999999999999999  999999    889999999998  8899999987553

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.9e-36  Score=264.24  Aligned_cols=269  Identities=21%  Similarity=0.347  Sum_probs=238.9

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCC-CCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP-SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ..+|++.|+.+.|+|+|.+|++||.|..|.+|++. ..+....+++|.++|..+.|.+|++.+++++.|.+|+.||++++
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG  122 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG  122 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence            45789999999999999999999999999999954 44667788999999999999999999999999999999999997


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                         ++++.+++|.+.|+.+.-..-|. ++.+++.||++++||+++...++.+.      ....++++.|..++..+.+|+
T Consensus       123 ---~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~------~kyqltAv~f~d~s~qv~sgg  193 (338)
T KOG0265|consen  123 ---KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE------NKYQLTAVGFKDTSDQVISGG  193 (338)
T ss_pred             ---eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc------cceeEEEEEecccccceeecc
Confidence               78899999999999998554444 67788999999999999988887774      235799999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC----cceeeeecCCCCCC--eeEEE
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL----KNFRSFESSDSETP--TNSVD  449 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~----~~~~~~~~~~~~~~--v~~i~  449 (504)
                      -|+.|++||++.+...+.+.||..+|+.+..+++|.++.+-+.|. +++||++-.    +++..+..+.|...  ...++
T Consensus       194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs  273 (338)
T KOG0265|consen  194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS  273 (338)
T ss_pred             ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence            999999999999999999999999999999999999999999998 999999854    34666766655443  45789


Q ss_pred             ECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          450 FDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       450 ~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      |+|++.++.+|+.|  +.+||.    .....+..++||  .+.|.+++|.|.-.+
T Consensus       274 wsp~~~~i~ags~dr~vyvwd~----~~r~~lyklpGh--~gsvn~~~Fhp~e~i  322 (338)
T KOG0265|consen  274 WSPNGTKITAGSADRFVYVWDT----TSRRILYKLPGH--YGSVNEVDFHPTEPI  322 (338)
T ss_pred             ccCCCCccccccccceEEEeec----ccccEEEEcCCc--ceeEEEeeecCCCcE
Confidence            99999999999999  999997    667899999999  999999999998654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.5e-35  Score=253.09  Aligned_cols=257  Identities=25%  Similarity=0.434  Sum_probs=223.7

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc--eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY  300 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  300 (504)
                      .+.|+.+.+.|+++.||+++. ..|++||+.++.  ++.++.+|+..|+++.|..+|+++++||.||+++|||++..   
T Consensus        40 dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~---  115 (311)
T KOG0315|consen   40 DSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL---  115 (311)
T ss_pred             ccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc---
Confidence            567999999999999999885 579999998764  58999999999999999999999999999999999999873   


Q ss_pred             ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010669          301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL  380 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~  380 (504)
                      .+.+.+ .|..+|+++..||+...|++|..+|.|++||+....+...+..    .....|.++...|||.+++.+...|.
T Consensus       116 ~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP----e~~~~i~sl~v~~dgsml~a~nnkG~  190 (311)
T KOG0315|consen  116 SCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP----EDDTSIQSLTVMPDGSMLAAANNKGN  190 (311)
T ss_pred             ccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC----CCCcceeeEEEcCCCcEEEEecCCcc
Confidence            444444 5779999999999999999999999999999999877766653    23367999999999999999999999


Q ss_pred             EEEEEcCCC------ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC-cceeeeecCCCCCCeeEEEECC
Q 010669          381 VKIWDVKSQ------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       381 I~iwd~~~~------~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~-~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      .++|++-+.      .++..|+.|.+.+..+.+||++++|++++.|. ++||+..+. +....+..+  ...++.++||.
T Consensus       191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~  268 (311)
T KOG0315|consen  191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSA  268 (311)
T ss_pred             EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeecc
Confidence            999998654      45677889999999999999999999999998 999999887 444444444  68999999999


Q ss_pred             CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEE
Q 010669          453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFL  496 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~  496 (504)
                      ||.||++|+.|  .++|++    ..++.+..+.+|  -....|++.
T Consensus       269 dg~YlvTassd~~~rlW~~----~~~k~v~qy~gh--~K~~vc~~l  308 (311)
T KOG0315|consen  269 DGEYLVTASSDHTARLWDL----SAGKEVRQYQGH--HKAAVCVAL  308 (311)
T ss_pred             CccEEEecCCCCceeeccc----ccCceeeecCCc--ccccEEEEe
Confidence            99999999999  999999    778899999999  445555544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.4e-37  Score=280.23  Aligned_cols=265  Identities=21%  Similarity=0.354  Sum_probs=231.7

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      .+-+|..+.|.|+|+.|++|+..|.+.+|+.........++.|..+|.++.|++++.++++|+.+|.|++|+...    .
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm----n  170 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM----N  170 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch----h
Confidence            456899999999999999999999999999755444455678999999999999999999999999999998765    3


Q ss_pred             eeEEeccCC-cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010669          302 CKHTLKDHT-AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL  380 (504)
Q Consensus       302 ~~~~~~~h~-~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~  380 (504)
                      .++.++.|. ..|++++|+|+...|++++.||+|+|||....+.-..+.     +|.-.|.+++|||...++++|+.|..
T Consensus       171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-----GHgwdVksvdWHP~kgLiasgskDnl  245 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-----GHGWDVKSVDWHPTKGLIASGSKDNL  245 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-----cCCCCcceeccCCccceeEEccCCce
Confidence            444555554 899999999999999999999999999999887766665     77788999999999999999999999


Q ss_pred             EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC-CCEEE
Q 010669          381 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLA  458 (504)
Q Consensus       381 I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~-g~~l~  458 (504)
                      |++||.+++.++.++.+|...|..+.|++++.+|++++.|. +++||+|+.+.+..+..|  ...++++.|+|- ..+|.
T Consensus       246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~~lft  323 (464)
T KOG0284|consen  246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNESLFT  323 (464)
T ss_pred             eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc--hhhheeecccccccccee
Confidence            99999999999999999999999999999999999999998 999999999999988877  678999999995 56777


Q ss_pred             EEeCc--EEEEEeeccCccceeEEEc-cCCCCCCceeEEEEeecCccc
Q 010669          459 VASAD--IRVYQVASVKADWNCIKTF-PDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       459 ~~~~d--i~vw~~~~~~~~~~~i~~~-~~h~~~~~v~~l~~~~~g~~~  503 (504)
                      +|+.|  +..|.+.    .-+.+..+ .+|  ...|.++++.|.|-+.
T Consensus       324 sgg~Dgsvvh~~v~----~~~p~~~i~~AH--d~~iwsl~~hPlGhil  365 (464)
T KOG0284|consen  324 SGGSDGSVVHWVVG----LEEPLGEIPPAH--DGEIWSLAYHPLGHIL  365 (464)
T ss_pred             eccCCCceEEEecc----ccccccCCCccc--ccceeeeeccccceeE
Confidence            88888  8889883    23344433 344  8899999999999763

>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein

Probab=100.00  E-value=2.6e-38  Score=214.73  Aligned_cols=70  Identities=70%  Similarity=1.022  Sum_probs=68.2

Q ss_pred             CCCCChhhHHHhhhhhhHHHHHhhhhhHHHHHHHHHHHhHhhhcccchhHHHHHHhcchhHHHHHHHHHh
Q 010669           64 LTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSE  133 (504)
Q Consensus        64 ~~~~sip~ll~~~q~Ewda~~le~~~lr~~l~~~~~els~aly~~daa~rv~a~l~kErd~ar~~l~~~~  133 (504)
                      |+++|||+||++|||||||+|||+|+|||||+++|||||+||||+|||||||||++||||++|++|++++
T Consensus         1 ~~~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l~   70 (70)
T PF08606_consen    1 PTATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAELQ   70 (70)
T ss_pred             CCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            7899999999999999999999999999999999999999999999999999999999999999998764

The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.3e-36  Score=293.98  Aligned_cols=206  Identities=28%  Similarity=0.483  Sum_probs=197.4

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|.++|..+.|+|+.++|++++.|+++++|.+.+..++-.++||..+|+++.|+|.|-+++|||.|++.++|.....
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~  525 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN  525 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999988775


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                         .+.+.+.+|-+.|.|+.|||+.+|+++||.|.+|++||+.+|..++.+.     +|..+|++++|+|+|++|++|+.
T Consensus       526 ---~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-----GH~~~V~al~~Sp~Gr~LaSg~e  597 (707)
T KOG0263|consen  526 ---KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-----GHKGPVTALAFSPCGRYLASGDE  597 (707)
T ss_pred             ---CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-----CCCCceEEEEEcCCCceEeeccc
Confidence               7788889999999999999999999999999999999999999999886     79999999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK  431 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~  431 (504)
                      ||.|.+||+.+++.+..+.+|.+.|.++.|+.+|..|++|+.|. |++||+.+..
T Consensus       598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            99999999999999999999999999999999999999999998 9999987644

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=291.98  Aligned_cols=272  Identities=27%  Similarity=0.471  Sum_probs=240.4

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc--eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      +...+...|.++.|+++|+.+++++.++.+++|+....+  ....+.+|...|.+++|+|++.++++++.|++|+|||+.
T Consensus       154 ~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  154 LAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             ecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            344557899999999999999999999999999997777  777788999999999999999999999999999999994


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      ..+  .+++++.+|...|++++|+|+++.+++|+.|++|++||++++++...+.     +|...|++++|+++|++|+++
T Consensus       234 ~~~--~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-----~hs~~is~~~f~~d~~~l~s~  306 (456)
T KOG0266|consen  234 DDG--RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-----GHSDGISGLAFSPDGNLLVSA  306 (456)
T ss_pred             CCC--eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-----ccCCceEEEEECCCCCEEEEc
Confidence            432  7888999999999999999999999999999999999999999998887     788899999999999999999


Q ss_pred             eCCCcEEEEEcCCCc--eeeeeeCCCCC--eEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCC-CCeeEEE
Q 010669          376 TSEALVKIWDVKSQA--NVAKFDGHVGA--VTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE-TPTNSVD  449 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~--~~~~~~~~~~~--i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~-~~v~~i~  449 (504)
                      +.||.|++||+.++.  ++..+.++...  ++++.|+|+|.++++++.|+ +++||++.+.....+..+... ..+.+..
T Consensus       307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence            999999999999998  56777766555  99999999999999999998 999999999999988887543 2455666


Q ss_pred             ECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          450 FDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       450 ~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      +++.+.++++|+.|  |.+|++    .+...+..+.+|. ...+..+++.+...
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~----~s~~~~~~l~~h~-~~~~~~~~~~~~~~  435 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDS----SSGGILQRLEGHS-KAAVSDLSSHPTEN  435 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeC----CccchhhhhcCCC-CCceeccccCCCcC
Confidence            68899999999999  999998    6678888888884 56667777666543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8e-35  Score=269.30  Aligned_cols=260  Identities=25%  Similarity=0.446  Sum_probs=237.6

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      ...|++++|+.+|.+||+|+.||.+++|+.. |..+.++..|.++|.++.|+.+|++|++++.||++.+||..++   ..
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g---~~  310 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG---TV  310 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc---eE
Confidence            3579999999999999999999999999964 7888999999999999999999999999999999999999886   66


Q ss_pred             eEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 010669          303 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK  382 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~  382 (504)
                      ...+.-|..+-.++.|- +...|++++.||.|+++.+....++.++.     +|...|.++.|+|.|.+|++++.|++++
T Consensus       311 ~q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~-----GH~g~V~alk~n~tg~LLaS~SdD~Tlk  384 (524)
T KOG0273|consen  311 KQQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFI-----GHHGEVNALKWNPTGSLLASCSDDGTLK  384 (524)
T ss_pred             EEeeeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeee-----cccCceEEEEECCCCceEEEecCCCeeE
Confidence            77777888887888887 56689999999999999999988888886     7889999999999999999999999999


Q ss_pred             EEEcCCCceeeeeeCCCCCeEEEEEcCCC---------cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          383 IWDVKSQANVAKFDGHVGAVTAISFSENG---------YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       383 iwd~~~~~~~~~~~~~~~~i~~l~~s~~g---------~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      ||++........+..|...|..+.|+|.|         ..+++++.|+ |++||+..+.++..+..|  ..+|.+++|+|
T Consensus       385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS~  462 (524)
T KOG0273|consen  385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFSP  462 (524)
T ss_pred             eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEecC
Confidence            99999999999999999999999999953         5788899998 999999999999998765  78999999999


Q ss_pred             CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      +|+|+|+|+.|  |.+|+.    +.++.++.+.+   ++.|..++|...|-
T Consensus       463 ~g~ylAsGs~dg~V~iws~----~~~~l~~s~~~---~~~Ifel~Wn~~G~  506 (524)
T KOG0273|consen  463 NGRYLASGSLDGCVHIWST----KTGKLVKSYQG---TGGIFELCWNAAGD  506 (524)
T ss_pred             CCcEEEecCCCCeeEeccc----cchheeEeecC---CCeEEEEEEcCCCC
Confidence            99999999999  999998    88999999987   67799999988773

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1e-34  Score=259.88  Aligned_cols=272  Identities=19%  Similarity=0.311  Sum_probs=237.9

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      .+..+|.+-|.|+++.|.+.++++|+.|++++|||+.+|++..++.||...|..+++|+-..|+++++.|+.|+.||++.
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~  224 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY  224 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                      .   +.++.+.+|-+.|.|++.+|.-+.|++|+.|.++++||+++...+..+.     +|...|..+.+.|-...+++|+
T Consensus       225 n---kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-----GH~~~V~~V~~~~~dpqvit~S  296 (460)
T KOG0285|consen  225 N---KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-----GHTNPVASVMCQPTDPQVITGS  296 (460)
T ss_pred             h---hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-----CCCCcceeEEeecCCCceEEec
Confidence            6   7788888999999999999999999999999999999999999888886     8899999999999777899999


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY  456 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~  456 (504)
                      .|++|++||++.++....+..|...|.+++.+|....+++++.|.|+-|++..+..+..+..+  ..-+++++...|| +
T Consensus       297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh--~~iintl~~nsD~-v  373 (460)
T KOG0285|consen  297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGH--NAIINTLSVNSDG-V  373 (460)
T ss_pred             CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccc--cceeeeeeeccCc-e
Confidence            999999999999999999999999999999999999999999999999999999988887665  6788999987765 5


Q ss_pred             EEEEeCc--EEEEEeeccCccceeEEEccCC---CCCCceeEEEEeecC
Q 010669          457 LAVASAD--IRVYQVASVKADWNCIKTFPDL---SGTGAASFLFLFVLG  500 (504)
Q Consensus       457 l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h---~~~~~v~~l~~~~~g  500 (504)
                      +++|+++  +.+||+.++ .+++..++..+-   ..+..|.+.+|-..|
T Consensus       374 ~~~G~dng~~~fwdwksg-~nyQ~~~t~vqpGSl~sEagI~as~fDktg  421 (460)
T KOG0285|consen  374 LVSGGDNGSIMFWDWKSG-HNYQRGQTIVQPGSLESEAGIFASCFDKTG  421 (460)
T ss_pred             EEEcCCceEEEEEecCcC-cccccccccccCCccccccceeEEeecccC
Confidence            6667766  999998443 233333222221   124556666666555

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.1e-34  Score=242.45  Aligned_cols=264  Identities=18%  Similarity=0.304  Sum_probs=234.3

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      +...++++|.++.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..|.+||+.++
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG   91 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG   91 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe--EEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                         +..+.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++..  +++.+.     .....|.++...  +..+++|
T Consensus        92 ---kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-----ea~D~V~Si~v~--~heIvaG  161 (307)
T KOG0316|consen   92 ---KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-----EAKDGVSSIDVA--EHEIVAG  161 (307)
T ss_pred             ---eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-----hhcCceeEEEec--ccEEEee
Confidence               7889999999999999999999999999999999999998653  444443     334568887776  5679999


Q ss_pred             eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669          376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG  454 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g  454 (504)
                      +.||+++.||+|.|+....+.+|  +|++++|+++|+..+.++-|+ +++.|-.+++.+..+.+|.....-...++....
T Consensus       162 S~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd  239 (307)
T KOG0316|consen  162 SVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD  239 (307)
T ss_pred             ccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence            99999999999999887777655  899999999999999999998 999999999999999998776677788899999


Q ss_pred             CEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCc-eeEEEEeec
Q 010669          455 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGA-ASFLFLFVL  499 (504)
Q Consensus       455 ~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~-v~~l~~~~~  499 (504)
                      ..+++|++|  +.+||+    -....+..++.|  ... |+++++.|.
T Consensus       240 thV~sgSEDG~Vy~wdL----vd~~~~sk~~~~--~~v~v~dl~~hp~  281 (307)
T KOG0316|consen  240 THVFSGSEDGKVYFWDL----VDETQISKLSVV--STVIVTDLSCHPT  281 (307)
T ss_pred             eeEEeccCCceEEEEEe----ccceeeeeeccC--CceeEEeeecccC
Confidence            999999999  999999    667788888776  333 788877764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.1e-33  Score=241.80  Aligned_cols=252  Identities=16%  Similarity=0.268  Sum_probs=219.9

Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEE
Q 010669          236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQA  315 (504)
Q Consensus       236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  315 (504)
                      -+|+++|.|-+|++|...+|.+.++++...+.|+.+...|+++.|++++. -.||+||+.+.. ..++.++.+|+..|++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-p~Pv~t~e~h~kNVta   88 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-PNPVATFEGHTKNVTA   88 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC-CCceeEEeccCCceEE
Confidence            48899999999999999999999999988889999999999999998876 479999999854 3588999999999999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 010669          316 VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF  395 (504)
Q Consensus       316 l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~  395 (504)
                      +.|+.+|+.+++||+||+++|||++...+.+.+      .+..+|+++..||+...|++|..+|.|++||++...+...+
T Consensus        89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l  162 (311)
T KOG0315|consen   89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL  162 (311)
T ss_pred             EEEeecCeEEEecCCCceEEEEeccCcccchhc------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence            999999999999999999999999996665555      45589999999999999999999999999999988776666


Q ss_pred             eC-CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc------eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EE
Q 010669          396 DG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN------FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IR  465 (504)
Q Consensus       396 ~~-~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~------~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~  465 (504)
                      .. ...+|.++...|||.+|+.+...| .++|++-....      +..+..+  .+.+..+.+||+++||+++|.|  ++
T Consensus       163 iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~  240 (311)
T KOG0315|consen  163 IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVK  240 (311)
T ss_pred             CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc--cceEEEEEECCCCcEEEeecCCceEE
Confidence            43 345899999999999999999888 99999876432      3334443  7789999999999999999999  99


Q ss_pred             EEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          466 VYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       466 vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ||+.+.   -.+....+.+|  ...+...+|+.+|+.
T Consensus       241 iwn~~~---~~kle~~l~gh--~rWvWdc~FS~dg~Y  272 (311)
T KOG0315|consen  241 IWNTDD---FFKLELVLTGH--QRWVWDCAFSADGEY  272 (311)
T ss_pred             EEecCC---ceeeEEEeecC--CceEEeeeeccCccE
Confidence            999832   24777888898  899999999999974

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.6e-33  Score=262.50  Aligned_cols=280  Identities=21%  Similarity=0.290  Sum_probs=226.8

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc---cCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS---GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~  294 (504)
                      -++.|..-|.|+.|+|||+++++++.||++.+||=.+|+.+..+.   +|.+.|.+++|+||+..+++++.|.+++|||+
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV  264 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV  264 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence            356688899999999999999999999999999999999999997   89999999999999999999999999999996


Q ss_pred             CCCC----------------------------------------CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeE
Q 010669          295 SEDG----------------------------------------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTW  334 (504)
Q Consensus       295 ~~~~----------------------------------------~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i  334 (504)
                      .+..                                        .......+.+|...|+++..+|++++|++|+.||.|
T Consensus       265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I  344 (603)
T KOG0318|consen  265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI  344 (603)
T ss_pred             eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence            5421                                        012345577899999999999999999999999999


Q ss_pred             EEEECCCCeEEEE-----------eecCC----------------------CCC--------------------------
Q 010669          335 CFYDLSSGICLTQ-----------VSDAG----------------------TDG--------------------------  355 (504)
Q Consensus       335 ~iwd~~~~~~~~~-----------~~~~~----------------------~~~--------------------------  355 (504)
                      .-||..++..-..           +....                      ...                          
T Consensus       345 ~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~  424 (603)
T KOG0318|consen  345 NSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC  424 (603)
T ss_pred             EEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence            9999976533211           00000                      000                          


Q ss_pred             -----------------CCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCCcEEEE
Q 010669          356 -----------------RPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLAT  416 (504)
Q Consensus       356 -----------------~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s  416 (504)
                                       -.....+++++|++..+++|+.||.|+||.+..+..  ......|.++|++++||||+.||++
T Consensus       425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~  504 (603)
T KOG0318|consen  425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAA  504 (603)
T ss_pred             cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEE
Confidence                             001235889999999999999999999999977553  3345669999999999999999999


Q ss_pred             EeCCc-EEEEEcCCCcce-eeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCcee
Q 010669          417 AAHDG-VKLWDLRKLKNF-RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAAS  492 (504)
Q Consensus       417 ~~~d~-v~vwd~~~~~~~-~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~  492 (504)
                      +...+ |.+||+.+.... ..+..|  ...|.+++|+|+...+|+|+-|  |.||++..   ..+.+.....|  ...|+
T Consensus       505 ~Da~rkvv~yd~~s~~~~~~~w~FH--takI~~~aWsP~n~~vATGSlDt~Viiysv~k---P~~~i~iknAH--~~gVn  577 (603)
T KOG0318|consen  505 GDASRKVVLYDVASREVKTNRWAFH--TAKINCVAWSPNNKLVATGSLDTNVIIYSVKK---PAKHIIIKNAH--LGGVN  577 (603)
T ss_pred             eccCCcEEEEEcccCceecceeeee--eeeEEEEEeCCCceEEEeccccceEEEEEccC---hhhheEecccc--ccCce
Confidence            99888 999999887652 223333  6899999999999999999999  99999954   34446666778  55599


Q ss_pred             EEEEeecCcccC
Q 010669          493 FLFLFVLGQTCS  504 (504)
Q Consensus       493 ~l~~~~~g~~~s  504 (504)
                      .+.|..+..+.|
T Consensus       578 ~v~wlde~tvvS  589 (603)
T KOG0318|consen  578 SVAWLDESTVVS  589 (603)
T ss_pred             eEEEecCceEEe
Confidence            999987765543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.1e-35  Score=270.50  Aligned_cols=242  Identities=21%  Similarity=0.372  Sum_probs=218.1

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccC-ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      +...|.++|.++.|+++|.++++|+.+|.|++|+..- ..+..+..| ...|++++|+|+...|++++.||+|+|||...
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~  211 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM  211 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence            6778999999999999999999999999999999763 445555554 48999999999999999999999999999877


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                      .   .....+.+|.-.|.+++|||....|+++|.|..|++||.+++.++..+.     +|...|..+.|+|++++|++++
T Consensus       212 ~---kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-----~HKntVl~~~f~~n~N~Llt~s  283 (464)
T KOG0284|consen  212 P---KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-----GHKNTVLAVKFNPNGNWLLTGS  283 (464)
T ss_pred             C---chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-----hccceEEEEEEcCCCCeeEEcc
Confidence            5   5556678999999999999999999999999999999999999998876     7889999999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG  454 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g  454 (504)
                      .|..+++||+++.+.+..+++|...|+++.|+| +..+|.+|+.|+ |..|.+....++..+.. .|...|++++|+|-|
T Consensus       284 kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlG  362 (464)
T KOG0284|consen  284 KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLG  362 (464)
T ss_pred             CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccc
Confidence            999999999999999999999999999999999 677889999998 99999886566555543 457899999999999


Q ss_pred             CEEEEEeCc--EEEEEe
Q 010669          455 SYLAVASAD--IRVYQV  469 (504)
Q Consensus       455 ~~l~~~~~d--i~vw~~  469 (504)
                      .+|++|+.|  +++|.-
T Consensus       363 hil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  363 HILATGSNDRTVRFWTR  379 (464)
T ss_pred             eeEeecCCCcceeeecc
Confidence            999999999  999975

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.1e-32  Score=261.28  Aligned_cols=267  Identities=31%  Similarity=0.565  Sum_probs=238.5

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      .+|..+|++++|+|++++|++++.||.+.+|++.+++....+..|...+..+.|+++++++++++.||.|++||+...  
T Consensus         6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--   83 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--   83 (289)
T ss_pred             cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--
Confidence            478899999999999999999999999999999988888888899999999999999999999999999999999875  


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA  379 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg  379 (504)
                       .....+..|...+.++.|+++++++++++.||.+.+||+++++....+.     .|...+.+++|+|++.++++++.+|
T Consensus        84 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~  157 (289)
T cd00200          84 -ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-----GHTDWVNSVAFSPDGTFVASSSQDG  157 (289)
T ss_pred             -cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-----cCCCcEEEEEEcCcCCEEEEEcCCC
Confidence             4566677888899999999998899988889999999999888777665     5667899999999999999988899


Q ss_pred             cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669          380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA  458 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~  458 (504)
                      .|++||+++++.+..+..|...+.++.|+|++..+++++.++ |++||+++++.+..+..+  ...+.++.|+|++.+++
T Consensus       158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~  235 (289)
T cd00200         158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPDGYLLA  235 (289)
T ss_pred             cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCCCcEEE
Confidence            999999999999989998988999999999998999988888 999999988887777544  56899999999999999


Q ss_pred             EEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          459 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       459 ~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +++.+  +++|++    ..+..+..+..|  ...|.++.|+++|+.
T Consensus       236 ~~~~~~~i~i~~~----~~~~~~~~~~~~--~~~i~~~~~~~~~~~  275 (289)
T cd00200         236 SGSEDGTIRVWDL----RTGECVQTLSGH--TNSVTSLAWSPDGKR  275 (289)
T ss_pred             EEcCCCcEEEEEc----CCceeEEEcccc--CCcEEEEEECCCCCE
Confidence            88845  999998    567788888887  778999999998653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.6e-34  Score=252.01  Aligned_cols=298  Identities=20%  Similarity=0.309  Sum_probs=243.8

Q ss_pred             HHHHHHhhcccCCCCCCC----------ChhHHhhccccceeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC
Q 010669          185 NAALSQQRKKRQVPPALA----------PIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS  254 (504)
Q Consensus       185 ~~~l~~~r~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~  254 (504)
                      .++|.++.-+..+||...          ....-++|+..-.+.+.-+.++.+-|..|+|||++|++|+.||.|.|||..+
T Consensus       165 GQaLKWQqHQGLLPPGt~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~  244 (508)
T KOG0275|consen  165 GQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTT  244 (508)
T ss_pred             HHHhhhHhhcCCCCCCceeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhcc
Confidence            456777766666666422          1122244555555556667778899999999999999999999999999999


Q ss_pred             CceEEEcc--------cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec-cCCcCeEEEEEccCCCEE
Q 010669          255 GQIVTTLS--------GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYF  325 (504)
Q Consensus       255 ~~~~~~~~--------~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l  325 (504)
                      |+..+.++        -+..+|.|+.|+.|...+++|+.||.|++|.+.++   .|++.+. .|+..|+|+.|+.|+..+
T Consensus       245 GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG---~ClRrFdrAHtkGvt~l~FSrD~Sqi  321 (508)
T KOG0275|consen  245 GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG---QCLRRFDRAHTKGVTCLSFSRDNSQI  321 (508)
T ss_pred             chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc---hHHHHhhhhhccCeeEEEEccCcchh
Confidence            98765543        46789999999999999999999999999999997   7888886 899999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC--CCCCeE
Q 010669          326 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG--HVGAVT  403 (504)
Q Consensus       326 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~--~~~~i~  403 (504)
                      ++++.|.++++.-+.+|++++.+.     +|.+.|+...|.+||+.+++++.||+|++|+.++.+++.+|+.  ...+|+
T Consensus       322 LS~sfD~tvRiHGlKSGK~LKEfr-----GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vn  396 (508)
T KOG0275|consen  322 LSASFDQTVRIHGLKSGKCLKEFR-----GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVN  396 (508)
T ss_pred             hcccccceEEEeccccchhHHHhc-----CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccce
Confidence            999999999999999999998887     8889999999999999999999999999999999999999874  445888


Q ss_pred             EEEEcC-CCcEEEEEeCCc-EEEEEcCCCcceeeeecCC-CCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCcccee
Q 010669          404 AISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNC  478 (504)
Q Consensus       404 ~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~-~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~  478 (504)
                      ++..-| +...++++...+ |++.++. |+.++++.... ..+...+.+.+|.|.++++.++|  ++.|.+    .++..
T Consensus       397 sv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~----~sG~L  471 (508)
T KOG0275|consen  397 SVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV----LSGKL  471 (508)
T ss_pred             eEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe----ecCce
Confidence            888877 556777777666 9999885 77788876543 24566778899999999999999  555555    56777


Q ss_pred             EEEccCCCCCCceeEEEEe
Q 010669          479 IKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       479 i~~~~~h~~~~~v~~l~~~  497 (504)
                      ..++..|  +..|.++.-.
T Consensus       472 E~tl~Vh--EkdvIGl~HH  488 (508)
T KOG0275|consen  472 ERTLPVH--EKDVIGLTHH  488 (508)
T ss_pred             eeeeecc--cccccccccC
Confidence            7777777  5555555433

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.7e-33  Score=239.18  Aligned_cols=274  Identities=22%  Similarity=0.370  Sum_probs=225.2

Q ss_pred             ccccCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCCCC---ceEEEc-ccCccceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669          217 PLHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSG---QIVTTL-SGHSKKVTSVKFVTEGDLFLTGSADKTVRV  291 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~---~~~~~~-~~h~~~v~~l~~s~~~~~l~s~s~dg~i~i  291 (504)
                      ....+|++.+..++|+|- |..||++|.|+.|++|+...+   .+...+ .+|+..|.+++|+|.|++|++||.|.++.|
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI   87 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence            346788899999999998 889999999999999998753   333334 379999999999999999999999999999


Q ss_pred             EeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669          292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI  371 (504)
Q Consensus       292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~  371 (504)
                      |.-.. +.++++.++.+|...|.+++|+++|++|++|+.|+.|-||.+..+........  +..|...|..+.|||...+
T Consensus        88 w~k~~-~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV--L~~HtqDVK~V~WHPt~dl  164 (312)
T KOG0645|consen   88 WKKED-GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV--LQEHTQDVKHVIWHPTEDL  164 (312)
T ss_pred             eecCC-CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee--eccccccccEEEEcCCcce
Confidence            98654 67899999999999999999999999999999999999999985543322221  3378889999999999999


Q ss_pred             EEEEeCCCcEEEEEcC---CCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeE
Q 010669          372 LGTGTSEALVKIWDVK---SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS  447 (504)
Q Consensus       372 l~~g~~dg~I~iwd~~---~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~  447 (504)
                      |++++.|++|++|+-.   ...++.++.+|.+.|.+++|+++|..|+++++|+ |+||-....     +. ..+...+..
T Consensus       165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~  238 (312)
T KOG0645|consen  165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYD  238 (312)
T ss_pred             eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhcccceEe
Confidence            9999999999999876   3468899999999999999999999999999998 999987621     21 123568899


Q ss_pred             EEECCCCCEEEEEeCc--EEEEEeecc--CccceeEEEc-cCCCCCCceeEEEEee--cCccc
Q 010669          448 VDFDHSGSYLAVASAD--IRVYQVASV--KADWNCIKTF-PDLSGTGAASFLFLFV--LGQTC  503 (504)
Q Consensus       448 i~~~~~g~~l~~~~~d--i~vw~~~~~--~~~~~~i~~~-~~h~~~~~v~~l~~~~--~g~~~  503 (504)
                      +.|.  ...|++++.|  |++|.-...  ...|+.+... ..|  +..|.++.+.|  .++++
T Consensus       239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH--e~dVNsV~w~p~~~~~L~  297 (312)
T KOG0645|consen  239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH--EVDVNSVQWNPKVSNRLA  297 (312)
T ss_pred             eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc--ccccceEEEcCCCCCcee
Confidence            9998  4567777777  999986431  2456666533 344  66999999999  45554

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-33  Score=252.48  Aligned_cols=242  Identities=26%  Similarity=0.498  Sum_probs=225.5

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC-CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      -.++|.+.|..+.|+..|+++++++.|-.+++||..+ .++++.+.+|...|.+++|-|.|+++++++.|.+|+.|++.+
T Consensus       145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t  224 (406)
T KOG0295|consen  145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT  224 (406)
T ss_pred             hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc
Confidence            4678999999999999999999999999999999876 567888889999999999999999999999999999999998


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC--------
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--------  368 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd--------  368 (504)
                      +   .++.++.+|...|..+..+.||.++++++.|.++++|-+.++.+...+.     .|..+|.|++|-|.        
T Consensus       225 g---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-----~hEh~vEci~wap~~~~~~i~~  296 (406)
T KOG0295|consen  225 G---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-----EHEHPVECIAWAPESSYPSISE  296 (406)
T ss_pred             c---eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-----ccccceEEEEecccccCcchhh
Confidence            7   8999999999999999999999999999999999999999998777766     67788999999763        


Q ss_pred             -------CCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC
Q 010669          369 -------GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD  440 (504)
Q Consensus       369 -------g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~  440 (504)
                             +.++++++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++.+|+ +++||+++.++...+..+ 
T Consensus       297 at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah-  375 (406)
T KOG0295|consen  297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH-  375 (406)
T ss_pred             ccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-
Confidence                   25899999999999999999999999999999999999999999999999998 999999999999999876 


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          441 SETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       441 ~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                       ...++++.|+.+..|+++|+-|  +++|.-
T Consensus       376 -~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  376 -EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             -cceeEEEecCCCCceEEeccccceeeeeec
Confidence             5689999999999999999999  999973

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.2e-32  Score=253.20  Aligned_cols=240  Identities=25%  Similarity=0.418  Sum_probs=219.4

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ....|++||.++.|+..|++|++++.||++.+||..++.....+.-|..+-..+.|-.+ ..+++++.||.|+|+.+...
T Consensus       271 tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~  349 (524)
T KOG0273|consen  271 TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGED  349 (524)
T ss_pred             hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCC
Confidence            35569999999999999999999999999999999999999999999988788999754 46899999999999999876


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC--------
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--------  369 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg--------  369 (504)
                         .++.++.+|.++|.++.|+|.+.+|+++|.|++++||..........+.     .|...|..+.|+|+|        
T Consensus       350 ---~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-----~Hskei~t~~wsp~g~v~~n~~~  421 (524)
T KOG0273|consen  350 ---RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-----AHSKEIYTIKWSPTGPVTSNPNM  421 (524)
T ss_pred             ---CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-----hhccceeeEeecCCCCccCCCcC
Confidence               7888999999999999999999999999999999999988877776665     778889999999965        


Q ss_pred             -CEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeE
Q 010669          370 -LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS  447 (504)
Q Consensus       370 -~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~  447 (504)
                       ..+++++.|++|++||+..+.++..|..|..+|++++|+|+|.++++|+.|+ |.+|+.++++.++.+..   ...|..
T Consensus       422 ~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ife  498 (524)
T KOG0273|consen  422 NLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFE  498 (524)
T ss_pred             CceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEE
Confidence             4789999999999999999999999999999999999999999999999998 99999999999998876   467999


Q ss_pred             EEECCCCCEEEEEeCc--EEEEEe
Q 010669          448 VDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       448 i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      ++|+.+|.+|.++-.|  +.+-|+
T Consensus       499 l~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  499 LCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             EEEcCCCCEEEEEecCCCceEEEe
Confidence            9999999999888777  888876

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-32  Score=261.04  Aligned_cols=262  Identities=21%  Similarity=0.328  Sum_probs=236.4

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      +.+.|.+++|+|....++++-.+|.|.|||.++...++.+.-..-+|.+..|-+..+++++|+.|..|+||+..+.   .
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~---e   88 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG---E   88 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc---e
Confidence            6778999999999999999999999999999999999999988999999999999999999999999999999886   7


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCc
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEAL  380 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~  380 (504)
                      .++.|..|.+.|.+++.||...+++++|+|-+|++||.+.+-...+..    .+|...|.+++|+| |.+.|++++-|++
T Consensus        89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf----eGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF----EGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE----cCcceEEEEEEecCCCccceeeeecccc
Confidence            889999999999999999999999999999999999998765444332    28899999999999 8899999999999


Q ss_pred             EEEEEcCCCceeeeeeCCCCCeEEEEEcCCC--cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEE
Q 010669          381 VKIWDVKSQANVAKFDGHVGAVTAISFSENG--YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL  457 (504)
Q Consensus       381 I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l  457 (504)
                      |+||.+.+..+..++.+|...|+|+.|-+.|  .+|++|++|. |+|||..+..+++++.+|  ...|..+.|+|.-.++
T Consensus       165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH--t~Nvs~v~fhp~lpii  242 (794)
T KOG0276|consen  165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH--TNNVSFVFFHPELPII  242 (794)
T ss_pred             EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc--cccceEEEecCCCcEE
Confidence            9999999999999999999999999999855  6999999998 999999999999999988  5689999999999999


Q ss_pred             EEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          458 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       458 ~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      ++|++|  ++||+-    ++.+...++.--  -+.|.+++..+
T Consensus       243 isgsEDGTvriWhs----~Ty~lE~tLn~g--leRvW~I~~~k  279 (794)
T KOG0276|consen  243 ISGSEDGTVRIWNS----KTYKLEKTLNYG--LERVWCIAAHK  279 (794)
T ss_pred             EEecCCccEEEecC----cceehhhhhhcC--CceEEEEeecC
Confidence            999999  999996    666666666542  55666666443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.9e-33  Score=261.23  Aligned_cols=273  Identities=16%  Similarity=0.282  Sum_probs=235.4

Q ss_pred             ccceeccccCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCC-CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcE
Q 010669          212 QLASHPLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTV  289 (504)
Q Consensus       212 ~~~~~~~~~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i  289 (504)
                      +........+|..+|+++.|.| .+.+|++++.|+.|+||++.. +.++++|.+|..+|.+++|+.+|..++++|.|+.|
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL  282 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence            3333445788999999999999 889999999999999999876 89999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669          290 RVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       290 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd  368 (504)
                      ++||++++   +++..+. -...++|+.|+|++ +.|++|+.|+.|+.||+++++.+..+.     .|-..|..+.|-++
T Consensus       283 KlwDtETG---~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-----~hLg~i~~i~F~~~  353 (503)
T KOG0282|consen  283 KLWDTETG---QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-----RHLGAILDITFVDE  353 (503)
T ss_pred             eeeccccc---eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-----hhhhheeeeEEccC
Confidence            99999997   6777664 34568999999998 899999999999999999999776664     55678999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeee-CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC---CcceeeeecCCCCC
Q 010669          369 GLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK---LKNFRSFESSDSET  443 (504)
Q Consensus       369 g~~l~~g~~dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~---~~~~~~~~~~~~~~  443 (504)
                      |+.+++.+.|+.++||+.+.+.++.... .+.....++..+|++.+++.-+.|+ |.+|.+..   ....+.+.+|...+
T Consensus       354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG  433 (503)
T KOG0282|consen  354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG  433 (503)
T ss_pred             CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence            9999999999999999999887665443 2334677899999999999999998 99998653   22334566665567


Q ss_pred             CeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          444 PTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       444 ~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      .-..+.|||||.+|++|+.+  +.+||+    ++-+.+..++.|  +..++.+.+.|-
T Consensus       434 ys~~v~fSpDG~~l~SGdsdG~v~~wdw----kt~kl~~~lkah--~~~ci~v~wHP~  485 (503)
T KOG0282|consen  434 YSCQVDFSPDGRTLCSGDSDGKVNFWDW----KTTKLVSKLKAH--DQPCIGVDWHPV  485 (503)
T ss_pred             ceeeEEEcCCCCeEEeecCCccEEEeec----hhhhhhhccccC--CcceEEEEecCC
Confidence            77889999999999999998  999999    888899999998  889999988874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.7e-33  Score=248.69  Aligned_cols=232  Identities=25%  Similarity=0.419  Sum_probs=216.0

Q ss_pred             ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEE
Q 010669          256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC  335 (504)
Q Consensus       256 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~  335 (504)
                      ++.+.+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.++   +...++.+|...|..+++++-..|+++++.|+.|+
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            455677899999999999999999999999999999999997   78889999999999999999999999999999999


Q ss_pred             EEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEE
Q 010669          336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLA  415 (504)
Q Consensus       336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~  415 (504)
                      .||++..+.+..+.     +|-+.|.|++.+|.-..|++|+.|.+++|||+|+...+..+.||..+|.++.+.|-...++
T Consensus       219 CwDLe~nkvIR~Yh-----GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi  293 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYH-----GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI  293 (460)
T ss_pred             EEechhhhhHHHhc-----cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence            99999998887775     7889999999999999999999999999999999999999999999999999999888899


Q ss_pred             EEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeE
Q 010669          416 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASF  493 (504)
Q Consensus       416 s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~  493 (504)
                      +|+.|+ |++||++.++...++..+  ...+.+++.+|....+++++.| ++-|++    ..+..++.+.+|  ++.|.+
T Consensus       294 t~S~D~tvrlWDl~agkt~~tlt~h--kksvral~lhP~e~~fASas~dnik~w~~----p~g~f~~nlsgh--~~iint  365 (460)
T KOG0285|consen  294 TGSHDSTVRLWDLRAGKTMITLTHH--KKSVRALCLHPKENLFASASPDNIKQWKL----PEGEFLQNLSGH--NAIINT  365 (460)
T ss_pred             EecCCceEEEeeeccCceeEeeecc--cceeeEEecCCchhhhhccCCccceeccC----Cccchhhccccc--cceeee
Confidence            999998 999999999988888766  6789999999999999999999 999999    788999999999  889999


Q ss_pred             EEEeecCccc
Q 010669          494 LFLFVLGQTC  503 (504)
Q Consensus       494 l~~~~~g~~~  503 (504)
                      +....||-..
T Consensus       366 l~~nsD~v~~  375 (460)
T KOG0285|consen  366 LSVNSDGVLV  375 (460)
T ss_pred             eeeccCceEE
Confidence            9998887543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9.6e-32  Score=270.57  Aligned_cols=243  Identities=26%  Similarity=0.490  Sum_probs=217.6

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcC-CCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDR-PSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      .+|...|.+++|+|+++++++++.|++|++||+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||+.++ 
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-  278 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-  278 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-
Confidence            678999999999999999999999999999999 556889999999999999999999999999999999999999985 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE--EEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                        .+...+.+|.+.|.+++|++++++|++++.|+.|++||+.++..  ...+..  ..... .+++++|+|++.++++++
T Consensus       279 --~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~--~~~~~-~~~~~~fsp~~~~ll~~~  353 (456)
T KOG0266|consen  279 --ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG--AENSA-PVTSVQFSPNGKYLLSAS  353 (456)
T ss_pred             --eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC--CCCCC-ceeEEEECCCCcEEEEec
Confidence              89999999999999999999999999999999999999999983  444432  11222 699999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCC---eEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGA---VTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~---i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      .|+.+++||++.+..+..+.+|...   +.+..++++|.++++|+.|+ |++||+.++..+..+..+. ...+..+.|++
T Consensus       354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~  432 (456)
T KOG0266|consen  354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHP  432 (456)
T ss_pred             CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCC
Confidence            9999999999999999999988774   44445677899999999998 9999999988888887764 57889999999


Q ss_pred             CCCEEEEEe--Cc--EEEEEe
Q 010669          453 SGSYLAVAS--AD--IRVYQV  469 (504)
Q Consensus       453 ~g~~l~~~~--~d--i~vw~~  469 (504)
                      ..+++++++  .|  +++|..
T Consensus       433 ~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  433 TENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             CcCeeeecCcCCCceEEEecC
Confidence            999999998  44  888875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.5e-31  Score=257.10  Aligned_cols=282  Identities=24%  Similarity=0.391  Sum_probs=238.7

Q ss_pred             hccccceeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce--EEEcccCccceeEEEEeeCCCEEEEEeCC
Q 010669          209 RYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSAD  286 (504)
Q Consensus       209 ~~~~~~~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~d  286 (504)
                      .|.+...+..+.+|...|+++.|+.|.++|++|+.|-.+++|++...+.  ...+.+|.+.|.++-|..+...+++.+.|
T Consensus       131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd  210 (893)
T KOG0291|consen  131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD  210 (893)
T ss_pred             ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence            4666666777889999999999999999999999999999999876555  66778999999999999998899999999


Q ss_pred             CcEEEEeCCC------------------------CC-----Cc-------------------------------------
Q 010669          287 KTVRVWQGSE------------------------DG-----NY-------------------------------------  300 (504)
Q Consensus       287 g~i~iwd~~~------------------------~~-----~~-------------------------------------  300 (504)
                      |.+.+|....                        ..     .+                                     
T Consensus       211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~  290 (893)
T KOG0291|consen  211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG  290 (893)
T ss_pred             ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence            9999997651                        00     00                                     


Q ss_pred             -------ceeEEeccCCcCeEEEEEccCCCEEEEEeCC-CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          301 -------DCKHTLKDHTAEVQAVTVHATNKYFVTASLD-NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       301 -------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                             .+++.+.-...+|..+.|+..|+.|+.|+.. |.+-+|+.++...+....     +|...+++++++|||+++
T Consensus       291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-----gH~~~i~~l~YSpDgq~i  365 (893)
T KOG0291|consen  291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-----GHSDRITSLAYSPDGQLI  365 (893)
T ss_pred             EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc-----ccccceeeEEECCCCcEE
Confidence                   0011111112345556666667777776553 788899988776555443     888999999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669          373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       373 ~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      ++|+.||.|+|||..++-++.+|..|.+.|+.+.|+.+|+.|++++-|| |+.||+...++.+++..+. .....+++.+
T Consensus       366 aTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~-p~QfscvavD  444 (893)
T KOG0291|consen  366 ATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE-PIQFSCVAVD  444 (893)
T ss_pred             EeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC-ceeeeEEEEc
Confidence            9999999999999999999999999999999999999999999999999 9999999999999998764 4567899999


Q ss_pred             CCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          452 HSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       452 ~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      |.|..+.+|+.|   |.||++    ++++.+..+.||  +++|.+++|.|.|..
T Consensus       445 ~sGelV~AG~~d~F~IfvWS~----qTGqllDiLsGH--EgPVs~l~f~~~~~~  492 (893)
T KOG0291|consen  445 PSGELVCAGAQDSFEIFVWSV----QTGQLLDILSGH--EGPVSGLSFSPDGSL  492 (893)
T ss_pred             CCCCEEEeeccceEEEEEEEe----ecCeeeehhcCC--CCcceeeEEccccCe
Confidence            999999999998   999999    899999999999  999999999999875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.9e-31  Score=239.89  Aligned_cols=267  Identities=21%  Similarity=0.300  Sum_probs=226.3

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      .+..|+..|.+++.+|+.++++|||.|....+|+..+++....+.+|...|+++.|+.+|.+|+||+.+|.|+||...++
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg  138 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG  138 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                         .....+...-..+.-+.|||.+..|+.|+.||.+.+|.+.++...+.+.     +|..++++-.|.|||+.+++|..
T Consensus       139 ---~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-----Gh~~~ct~G~f~pdGKr~~tgy~  210 (399)
T KOG0296|consen  139 ---GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-----GHNSPCTCGEFIPDGKRILTGYD  210 (399)
T ss_pred             ---ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-----CCCCCcccccccCCCceEEEEec
Confidence               3444444455778899999999999999999999999999976666665     78899999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeeeC------C---------------------------------------------CCCeEEEE
Q 010669          378 EALVKIWDVKSQANVAKFDG------H---------------------------------------------VGAVTAIS  406 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~------~---------------------------------------------~~~i~~l~  406 (504)
                      ||+|++||++++.++..+..      +                                             ...+.|+.
T Consensus       211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence            99999999999988766541      0                                             00111222


Q ss_pred             E---cCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEE
Q 010669          407 F---SENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIK  480 (504)
Q Consensus       407 ~---s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~  480 (504)
                      |   +..=.+.|+|+-|| |.|||+.+.+.......   ...|..+.|.+ ..||++++.+  |+.||.    ++++++.
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h---e~~V~~l~w~~-t~~l~t~c~~g~v~~wDa----RtG~l~~  362 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH---EDGVTKLKWLN-TDYLLTACANGKVRQWDA----RTGQLKF  362 (399)
T ss_pred             hcccccccchhhcccccceEEEEecccchhheeccC---CCceEEEEEcC-cchheeeccCceEEeeec----cccceEE
Confidence            2   22334678888898 99999988766544432   56799999999 7888888888  999998    8999999


Q ss_pred             EccCCCCCCceeEEEEeecCcc
Q 010669          481 TFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       481 ~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ++.||  ...|.+++++|+++.
T Consensus       363 ~y~GH--~~~Il~f~ls~~~~~  382 (399)
T KOG0296|consen  363 TYTGH--QMGILDFALSPQKRL  382 (399)
T ss_pred             EEecC--chheeEEEEcCCCcE
Confidence            99999  899999999998753

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.5e-31  Score=257.89  Aligned_cols=263  Identities=18%  Similarity=0.352  Sum_probs=237.6

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC-CcEEEEeCCCCCCcc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD-KTVRVWQGSEDGNYD  301 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d-g~i~iwd~~~~~~~~  301 (504)
                      ...|+|.+|++..+.|++|-..|...+|.+....++..+.-...+|..++|+..|++|+.|+.. |.+-||++...   .
T Consensus       265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---s  341 (893)
T KOG0291|consen  265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---S  341 (893)
T ss_pred             ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---c
Confidence            4789999999999999999999999999999999999998777899999999999999988754 89999999885   5


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      -+...++|...+++++++|||+++++|+.||.|++||..++-|..++.     .|.+.|+.+.|+..|+.+++.+-||+|
T Consensus       342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-----eHts~Vt~v~f~~~g~~llssSLDGtV  416 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-----EHTSGVTAVQFTARGNVLLSSSLDGTV  416 (893)
T ss_pred             eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-----cCCCceEEEEEEecCCEEEEeecCCeE
Confidence            566678999999999999999999999999999999999999999987     778999999999999999999999999


Q ss_pred             EEEEcCCCceeeeeeCC-CCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669          382 KIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA  458 (504)
Q Consensus       382 ~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~  458 (504)
                      +.||+...+..++|... .....|++..|.|..+++|+.|.  |.+|++.+|+.+-.+.+|  .++|.+++|+|+|..|+
T Consensus       417 RAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH--EgPVs~l~f~~~~~~La  494 (893)
T KOG0291|consen  417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH--EGPVSGLSFSPDGSLLA  494 (893)
T ss_pred             EeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC--CCcceeeEEccccCeEE
Confidence            99999999999888753 34678999999999999999997  999999999999999887  78999999999999999


Q ss_pred             EEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          459 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       459 ~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      +++.|  |++|++-.   .+..+.++.-   ...|+++.|.|+|+
T Consensus       495 S~SWDkTVRiW~if~---s~~~vEtl~i---~sdvl~vsfrPdG~  533 (893)
T KOG0291|consen  495 SGSWDKTVRIWDIFS---SSGTVETLEI---RSDVLAVSFRPDGK  533 (893)
T ss_pred             eccccceEEEEEeec---cCceeeeEee---ccceeEEEEcCCCC
Confidence            99999  99999843   3455566643   56799999999985

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-31  Score=241.06  Aligned_cols=270  Identities=17%  Similarity=0.245  Sum_probs=228.8

Q ss_pred             eccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC---ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669          216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW  292 (504)
Q Consensus       216 ~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iw  292 (504)
                      .++...|.+.|..+.||++|++||+++.|.+..+|.+...   +...++.+|..+|..+.||||.++|++|+.|..+.+|
T Consensus       217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW  296 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence            3466789999999999999999999999999999986543   4578889999999999999999999999999999999


Q ss_pred             eCCCCCCcceeEEec-cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669          293 QGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI  371 (504)
Q Consensus       293 d~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~  371 (504)
                      |+.++   .+.+.+. +|...+.+++|.|||..+++|+.|++|..||++... ......    .....|.+++..+||++
T Consensus       297 Dv~tg---d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~g----vr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  297 DVDTG---DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEG----VRDPKVHDLAITYDGKY  368 (519)
T ss_pred             cCCcc---hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccc----cccceeEEEEEcCCCcE
Confidence            99986   3444332 355789999999999999999999999999998653 333321    12246999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEE
Q 010669          372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF  450 (504)
Q Consensus       372 l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~  450 (504)
                      +++.+.|..|++|+..+......+. ...+|++++.|.||+++++.-.+. +.+||+...+.++.+.++.....+..-+|
T Consensus       369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF  447 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF  447 (519)
T ss_pred             EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence            9999999999999987765554443 446899999999999999888886 99999999899999998876667777777


Q ss_pred             CC-CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          451 DH-SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       451 ~~-~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      -. +..++++|++|  |+||+.    .+++++..++||  ...|.++++.|..
T Consensus       448 gg~~~~fiaSGSED~kvyIWhr----~sgkll~~LsGH--s~~vNcVswNP~~  494 (519)
T KOG0293|consen  448 GGGNDKFIASGSEDSKVYIWHR----ISGKLLAVLSGH--SKTVNCVSWNPAD  494 (519)
T ss_pred             CCCCcceEEecCCCceEEEEEc----cCCceeEeecCC--cceeeEEecCCCC
Confidence            65 44899999999  999997    889999999999  8899999998865

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.4e-30  Score=276.68  Aligned_cols=269  Identities=18%  Similarity=0.283  Sum_probs=217.0

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----c----eEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEE
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----Q----IVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRV  291 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~----~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~i  291 (504)
                      .|...|.+++|+|+|++|++|+.||.|+||+....    .    ....+. +...|.+++|++ ++.+|++++.||+|++
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l  559 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV  559 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence            37889999999999999999999999999997531    1    122333 346799999987 5789999999999999


Q ss_pred             EeCCCCCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEEC-CCC
Q 010669          292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH-PDG  369 (504)
Q Consensus       292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-pdg  369 (504)
                      ||+.++   ..+..+.+|.+.|++++|+| ++.+|++|+.||.|++||++++..+..+..      ...+.++.|+ ++|
T Consensus       560 Wd~~~~---~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------~~~v~~v~~~~~~g  630 (793)
T PLN00181        560 WDVARS---QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT------KANICCVQFPSESG  630 (793)
T ss_pred             EECCCC---eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec------CCCeEEEEEeCCCC
Confidence            999875   66778889999999999997 788999999999999999999988777642      2468999995 479


Q ss_pred             CEEEEEeCCCcEEEEEcCCCc-eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC------cceeeeecCCC
Q 010669          370 LILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL------KNFRSFESSDS  441 (504)
Q Consensus       370 ~~l~~g~~dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~------~~~~~~~~~~~  441 (504)
                      .+|++|+.||.|++||+++.+ .+..+.+|...|+++.|. ++.+|++++.|+ |++||++..      ..+..+..+  
T Consensus       631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--  707 (793)
T PLN00181        631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH--  707 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--
Confidence            999999999999999998865 567788999999999997 778899999998 999999853      455666554  


Q ss_pred             CCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccce-------eEEEccCCCCCCceeEEEEeecCcc
Q 010669          442 ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN-------CIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       442 ~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~-------~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ...+..++|++++.+|++|+.|  +++|+.......+.       .+..+..+.+...|.+++|+++|..
T Consensus       708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence            5688999999999999999988  99999633211111       1111111112567999999998865

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=9.7e-32  Score=245.18  Aligned_cols=268  Identities=24%  Similarity=0.345  Sum_probs=231.7

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc--eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ....|.+.+..+.|-++...|++|+.|..|++|++..++  .+.++.+..+.|+.+.|.+++..+++++.|+.+++|++.
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd  249 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD  249 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence            456789999999999999999999999999999987665  678888999999999999999999999999999999998


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      ..   +...++.+|++.|+++.|......+++|+.|.+|++||+....+...+...      +.+..++.+  +..+++|
T Consensus       250 ~~---r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~------S~cnDI~~~--~~~~~Sg  318 (459)
T KOG0288|consen  250 SL---RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG------SQCNDIVCS--ISDVISG  318 (459)
T ss_pred             ch---hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc------ccccceEec--ceeeeec
Confidence            75   788899999999999999877777999999999999999998888777532      334445554  6679999


Q ss_pred             eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC--CCCCeeEEEECC
Q 010669          376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD--SETPTNSVDFDH  452 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~--~~~~v~~i~~~~  452 (504)
                      ..|+.|++||.++..+......+. .|+++..+++|..|.+++.|. +.++|+++......+....  .....+.+.|+|
T Consensus       319 H~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  319 HFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP  397 (459)
T ss_pred             ccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence            999999999999999999988664 999999999999999998887 9999999988877776532  234588999999


Q ss_pred             CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      ++.|+++||.|  ++||++    .++++...+..-.....|+++.|.+.|.
T Consensus       398 d~~YvaAGS~dgsv~iW~v----~tgKlE~~l~~s~s~~aI~s~~W~~sG~  444 (459)
T KOG0288|consen  398 DGSYVAAGSADGSVYIWSV----FTGKLEKVLSLSTSNAAITSLSWNPSGS  444 (459)
T ss_pred             CCceeeeccCCCcEEEEEc----cCceEEEEeccCCCCcceEEEEEcCCCc
Confidence            99999999999  999999    6777777776652234699999999885

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=250.08  Aligned_cols=276  Identities=20%  Similarity=0.329  Sum_probs=229.3

Q ss_pred             hhccccceeccccCCCCCeEEEEeccCCCE-EEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC
Q 010669          208 ERYTQLASHPLHKTSKPGIVSLDIHYSKDV-IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD  286 (504)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~I~~~~~s~~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d  286 (504)
                      ..|.+....+.++. .+.|.+++|+|...+ +|+.+ .-.+.+|+..+....+++......|.++.|..||++|++|...
T Consensus        12 ~~w~~~~~~~~~ke-~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~s   89 (487)
T KOG0310|consen   12 RYWRQETFPPVHKE-HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDES   89 (487)
T ss_pred             hhhhhhcccccccc-cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCc
Confidence            33444444444443 478999999997653 34433 3469999998888888787788899999999999999999999


Q ss_pred             CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEE
Q 010669          287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF  365 (504)
Q Consensus       287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  365 (504)
                      |.|+|||+.+.   ..+..+.+|+.+|..+.|+|.+ ..+++|++|+.+++||+.+......+     .+|...|.|.+|
T Consensus        90 G~V~vfD~k~r---~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l-----~~htDYVR~g~~  161 (487)
T KOG0310|consen   90 GHVKVFDMKSR---VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL-----SGHTDYVRCGDI  161 (487)
T ss_pred             CcEEEeccccH---HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe-----cCCcceeEeecc
Confidence            99999996653   4567788999999999999965 57788889999999999998853333     388999999999


Q ss_pred             CC-CCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCC
Q 010669          366 HP-DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSET  443 (504)
Q Consensus       366 ~p-dg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~  443 (504)
                      +| ++.++++|+.||.|++||++.. ..+.++. |..+|..+.|-|.|..+++++.+.|++||+.+|......... |..
T Consensus       162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~-H~K  239 (487)
T KOG0310|consen  162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFN-HNK  239 (487)
T ss_pred             ccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhc-ccc
Confidence            99 6779999999999999999987 5666666 889999999999999999999888999999966544433332 368


Q ss_pred             CeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          444 PTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       444 ~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .|+|+.+..++..|++|+-|  +++|++    .+++.+..+.-   .++|.+++++|++++
T Consensus       240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~----t~~Kvv~s~~~---~~pvLsiavs~dd~t  293 (487)
T KOG0310|consen  240 TVTCLRLASDSTRLLSGSLDRHVKVFDT----TNYKVVHSWKY---PGPVLSIAVSPDDQT  293 (487)
T ss_pred             eEEEEEeecCCceEeecccccceEEEEc----cceEEEEeeec---ccceeeEEecCCCce
Confidence            99999999999999999999  999998    78999999865   789999999998875

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-31  Score=235.96  Aligned_cols=268  Identities=25%  Similarity=0.440  Sum_probs=228.7

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe---
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ---  293 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd---  293 (504)
                      ..+.+|+++|+.++.......+.+++.|.+.+||.++++.++.++.||.+.|++++|++.+.++++++.|++-.||.   
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av  221 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV  221 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence            35789999999999988888999999999999999999999999999999999999999999999999999999996   


Q ss_pred             ---CCC-----------------------------CC--CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 010669          294 ---GSE-----------------------------DG--NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL  339 (504)
Q Consensus       294 ---~~~-----------------------------~~--~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~  339 (504)
                         +..                             ++  ...++..+.+|.+.|.+..|...|+.+++++.|.+-.+||+
T Consensus       222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDV  301 (481)
T KOG0300|consen  222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDV  301 (481)
T ss_pred             cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeee
Confidence               111                             00  01234567799999999999999999999999999999999


Q ss_pred             CCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669          340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAA  418 (504)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~  418 (504)
                      +++..+..+.     +|....+.++-||..+++++.+.|.+.++||++.. ..+..|.||...|+++.|..+ ..+++|+
T Consensus       302 Etge~v~~Lt-----GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgS  375 (481)
T KOG0300|consen  302 ETGEVVNILT-----GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGS  375 (481)
T ss_pred             ccCceecccc-----CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecC
Confidence            9999988876     88899999999999999999999999999999854 457789999999999999854 5688999


Q ss_pred             CCc-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEcc-----CCCCCC
Q 010669          419 HDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP-----DLSGTG  489 (504)
Q Consensus       419 ~d~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~-----~h~~~~  489 (504)
                      +|. |++||+++.+ ++.++..   ..+++.++.+..+.+++.--++  |++||+     ++..+..++     +|  .-
T Consensus       376 DDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDl-----nG~RlaRlPrtsRqgH--rR  445 (481)
T KOG0300|consen  376 DDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDL-----NGNRLARLPRTSRQGH--RR  445 (481)
T ss_pred             CCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEec-----CCCccccCCccccccc--ce
Confidence            997 9999999875 4566655   5789999999988898888777  999998     344444443     66  66


Q ss_pred             ceeEEEEeecC
Q 010669          490 AASFLFLFVLG  500 (504)
Q Consensus       490 ~v~~l~~~~~g  500 (504)
                      -|+|.++..+-
T Consensus       446 MV~c~AW~eeh  456 (481)
T KOG0300|consen  446 MVTCCAWLEEH  456 (481)
T ss_pred             eeeeeeccccC
Confidence            78888776543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.1e-32  Score=266.49  Aligned_cols=243  Identities=20%  Similarity=0.362  Sum_probs=203.7

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC--------------------------------C----------
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS--------------------------------G----------  255 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~--------------------------------~----------  255 (504)
                      +...|.+.|+++.||+||+|||+||.||.|+||.+..                                .          
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            4458999999999999999999999999999998654                                0          


Q ss_pred             ------------------ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEE
Q 010669          256 ------------------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT  317 (504)
Q Consensus       256 ------------------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~  317 (504)
                                        +++..|.||.+.|.++.|+. .++|++++.|.+|++|++...   .|+..| .|.+.|+|++
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~---~CL~~F-~HndfVTcVa  416 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRK---ECLKVF-SHNDFVTCVA  416 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCc---ceeeEE-ecCCeeEEEE
Confidence                              12334668999999999996 458999999999999999875   788877 5999999999


Q ss_pred             Ecc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 010669          318 VHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD  396 (504)
Q Consensus       318 ~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~  396 (504)
                      |+| |.+||++|+-||.|+||++...+.+.....      ..-|++++|.|||+..++|+.+|.+++|+....+....+.
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH  490 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeehhh------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence            999 778999999999999999998876655432      2579999999999999999999999999998877655442


Q ss_pred             C--C------CCCeEEEEEcCCC-cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--E
Q 010669          397 G--H------VGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--I  464 (504)
Q Consensus       397 ~--~------~~~i~~l~~s~~g-~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i  464 (504)
                      -  |      ...|+.+.|.|.. ..|++.+.|. |+|||++....+..+++......-....|+.||++|+++++|  |
T Consensus       491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V  570 (712)
T KOG0283|consen  491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV  570 (712)
T ss_pred             EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence            1  1      2279999999843 3455556666 999999999999999887666667788999999999999998  9


Q ss_pred             EEEEeec
Q 010669          465 RVYQVAS  471 (504)
Q Consensus       465 ~vw~~~~  471 (504)
                      +||++..
T Consensus       571 YiW~~~~  577 (712)
T KOG0283|consen  571 YIWKNDS  577 (712)
T ss_pred             EEEeCCC
Confidence            9999743

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-31  Score=264.93  Aligned_cols=265  Identities=23%  Similarity=0.346  Sum_probs=232.4

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ..+.|..++|+|...+++++-..|.|.+||..-+.++..|..|.++|..++|+|+..++++||.|-.|+||+..+.   +
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---r   84 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---R   84 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc---e
Confidence            3557889999999999999999999999999999999999999999999999999999999999999999999886   8


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      |+.++.+|-+.|..+.||+.-.+|+++|+|.+|+||+..+++++..+.     +|...|.|..|||...++++++-|.+|
T Consensus        85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-----GHnHYVMcAqFhptEDlIVSaSLDQTV  159 (1202)
T KOG0292|consen   85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-----GHNHYVMCAQFHPTEDLIVSASLDQTV  159 (1202)
T ss_pred             ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-----cCceEEEeeccCCccceEEEecccceE
Confidence            999999999999999999999999999999999999999999999987     888999999999999999999999999


Q ss_pred             EEEEcCCCc-----------------------------eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc
Q 010669          382 KIWDVKSQA-----------------------------NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK  431 (504)
Q Consensus       382 ~iwd~~~~~-----------------------------~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~  431 (504)
                      ||||+..-+                             ..+.+.||...|+-++|+|.-.++++|++|. |++|.+...+
T Consensus       160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence            999984210                             0134578999999999999999999999998 9999998665


Q ss_pred             ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          432 NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       432 ~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      ....-....|.+.|.++-|+|....+++.|+|  |+|||+    ...+.+++|+--  ++.-..++..|..
T Consensus       240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm----~kRt~v~tfrre--ndRFW~laahP~l  304 (1202)
T KOG0292|consen  240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM----TKRTSVQTFRRE--NDRFWILAAHPEL  304 (1202)
T ss_pred             ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec----ccccceeeeecc--CCeEEEEEecCCc
Confidence            44333334457899999999999999999999  999999    556677777543  4566666665543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-31  Score=229.40  Aligned_cols=271  Identities=17%  Similarity=0.255  Sum_probs=229.2

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|..+++-+.|+.+|++|++++.|.+..||-..+|+.+.++.+|++.|+|+....+.+.+++|+.|.++++||++++ 
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG-   84 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG-   84 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC-
Confidence            5679999999999999999999999999999998899999999999999999999999999999999999999999997 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeC-----CCeEEEEECCC-------CeEEEEeecCCCCCCCCCeEEEEEC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-----DNTWCFYDLSS-------GICLTQVSDAGTDGRPEGYTSAAFH  366 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-----dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~  366 (504)
                        +++..+. ...+|..+.|+++|++++.++.     .+.|.++|++.       ..+...+.     .+.+.++.+-|.
T Consensus        85 --k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-----t~~skit~a~Wg  156 (327)
T KOG0643|consen   85 --KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-----TPDSKITSALWG  156 (327)
T ss_pred             --cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-----CCccceeeeeec
Confidence              6666664 4578999999999999888765     46799999983       33444443     345789999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCce-eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC
Q 010669          367 PDGLILGTGTSEALVKIWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP  444 (504)
Q Consensus       367 pdg~~l~~g~~dg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~  444 (504)
                      |-+.+|++|..||.|.+||+++++. +.....|...|+.+.|+++..++++++.|. -++||+++...++++..   ..+
T Consensus       157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t---e~P  233 (327)
T KOG0643|consen  157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT---ERP  233 (327)
T ss_pred             ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee---ccc
Confidence            9999999999999999999999854 555577999999999999999999999998 99999999999999987   578


Q ss_pred             eeEEEECCCCCEEEEEeCc----EEEEEeeccC--------ccceeEEEccCCCCCCceeEEEEeecCccc
Q 010669          445 TNSVDFDHSGSYLAVASAD----IRVYQVASVK--------ADWNCIKTFPDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       445 v~~i~~~~~g~~l~~~~~d----i~vw~~~~~~--------~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~  503 (504)
                      +++.+++|-..+++.|+..    |.-=.-..++        -.-+.+..+++|  -++|.+++|.|+|+-.
T Consensus       234 vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPINsvAfhPdGksY  302 (327)
T KOG0643|consen  234 VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPINSVAFHPDGKSY  302 (327)
T ss_pred             ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcceeEECCCCccc
Confidence            9999999988877776554    2221110000        112467788999  8999999999999753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-30  Score=225.77  Aligned_cols=240  Identities=24%  Similarity=0.403  Sum_probs=204.2

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC--ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      +-.+|+..|.+++|+|.|++|++|+.|.++.||.-..+  +++.++.||...|.|++|+++|++|++++.|+.|-||.+.
T Consensus        56 ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   56 LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence            45689999999999999999999999999999986644  6789999999999999999999999999999999999999


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECC-C--CeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS-S--GICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~-~--~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      .+..+.+...++.|+..|..+.|||...+|+++|.|.+|++|+-. .  -.+...+.     +|...|.+++|++.|..|
T Consensus       136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-----g~~~TVW~~~F~~~G~rl  210 (312)
T KOG0645|consen  136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-----GHENTVWSLAFDNIGSRL  210 (312)
T ss_pred             CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-----CccceEEEEEecCCCceE
Confidence            888899999999999999999999999999999999999999876 2  23455554     777899999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc------ceeeeecCCCCCCe
Q 010669          373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK------NFRSFESSDSETPT  445 (504)
Q Consensus       373 ~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~------~~~~~~~~~~~~~v  445 (504)
                      ++++.|++|+||-..+.-    -..|..+++.+.|.  ...|++++.|+ |++|.-...-      .+... ...|...|
T Consensus       211 ~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dV  283 (312)
T KOG0645|consen  211 VSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDV  283 (312)
T ss_pred             EEecCCcceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hccccccc
Confidence            999999999999865321    12377899999998  44788888887 9999765421      11111 12346689


Q ss_pred             eEEEECCC-CCEEEEEeCc--EEEEEe
Q 010669          446 NSVDFDHS-GSYLAVASAD--IRVYQV  469 (504)
Q Consensus       446 ~~i~~~~~-g~~l~~~~~d--i~vw~~  469 (504)
                      +++.|+|. .+.|++|++|  +++|.+
T Consensus       284 NsV~w~p~~~~~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  284 NSVQWNPKVSNRLASGGDDGIVNFWEL  310 (312)
T ss_pred             ceEEEcCCCCCceeecCCCceEEEEEe
Confidence            99999995 6889999998  999987

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8.1e-33  Score=246.79  Aligned_cols=255  Identities=22%  Similarity=0.406  Sum_probs=219.8

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ...+|+|+.+.  ...+++|..|++|+|||..+..+...+.||++.|.|+.|  +.+.+++|+.|.+|+|||++++   +
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tg---e  268 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTG---E  268 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCC---c
Confidence            35689999875  667999999999999999999999999999999999999  6679999999999999999997   7


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      ++.++.+|...|..+.|+  +.++++++.|.++.+||+.....+....  ...+|...|+.+.|+.  +++++++.|.+|
T Consensus       269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rr--VLvGHrAaVNvVdfd~--kyIVsASgDRTi  342 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDD--KYIVSASGDRTI  342 (499)
T ss_pred             hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHH--HHhhhhhheeeecccc--ceEEEecCCceE
Confidence            888889999999999996  6799999999999999998765321111  1337888999999974  599999999999


Q ss_pred             EEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEE
Q 010669          382 KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA  460 (504)
Q Consensus       382 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~  460 (504)
                      ++|++.+++.+.++.+|...|.|+.+  +|+++++|+.|. |++||+..|.+++.+.+|  ..-|.++.|+  .+.+++|
T Consensus       343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH--EeLvRciRFd--~krIVSG  416 (499)
T KOG0281|consen  343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFD--NKRIVSG  416 (499)
T ss_pred             EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch--HHhhhheeec--Cceeeec
Confidence            99999999999999999999999998  899999999998 999999999999999887  6789999995  5789999


Q ss_pred             eCc--EEEEEeeccCcc-----ceeEEEccCCCCCCceeEEEEe
Q 010669          461 SAD--IRVYQVASVKAD-----WNCIKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       461 ~~d--i~vw~~~~~~~~-----~~~i~~~~~h~~~~~v~~l~~~  497 (504)
                      +.|  |+|||+...-..     --|+.++..|  .+.|..++|-
T Consensus       417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~h--sgRVFrLQFD  458 (499)
T KOG0281|consen  417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEH--SGRVFRLQFD  458 (499)
T ss_pred             cccceEEEEecccccCCcccccchHHHhhhhc--cceeEEEeec
Confidence            999  999999654322     2256666677  7788777764

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=9.4e-30  Score=255.17  Aligned_cols=266  Identities=19%  Similarity=0.234  Sum_probs=202.8

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE-------------EEcccCccceeEEEEee-CCCEEEEEeCCCcE
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-------------TTLSGHSKKVTSVKFVT-EGDLFLTGSADKTV  289 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~-------------~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i  289 (504)
                      ..|.....++++..+++++.+.....|+...+..+             ..+.+|.+.|++++|+| ++++|++|+.||+|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            34555556666666666666666666664433221             24678999999999999 88899999999999


Q ss_pred             EEEeCCCCCC----cceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEE
Q 010669          290 RVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA  364 (504)
Q Consensus       290 ~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  364 (504)
                      ++||+...+.    ...+..+.+|...|.+++|+|++ ++|++++.|++|++||+++++....+.     +|...|.+++
T Consensus       101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-----~h~~~V~sla  175 (493)
T PTZ00421        101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-----CHSDQITSLE  175 (493)
T ss_pred             EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-----CCCCceEEEE
Confidence            9999976421    13566788999999999999985 699999999999999999998777664     5677899999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCC-eEEEEEcCCCcEEEEEe----CCc-EEEEEcCCCcceeeeec
Q 010669          365 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGA-VTAISFSENGYYLATAA----HDG-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       365 ~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~g~~l~s~~----~d~-v~vwd~~~~~~~~~~~~  438 (504)
                      |+|+|.+|++|+.||.|++||+++++.+..+.+|.+. +..+.|.+++..+++++    .|+ |++||+++.........
T Consensus       176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~  255 (493)
T PTZ00421        176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD  255 (493)
T ss_pred             EECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence            9999999999999999999999999999999888764 45778999877777654    356 99999998654333222


Q ss_pred             CCCCCCeeEEEECCCCCEEEEEeC-c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          439 SDSETPTNSVDFDHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       439 ~~~~~~v~~i~~~~~g~~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      ......+....|++++++|++++. |  |++|++.    +...+..+... ...++.+++|.|.
T Consensus       256 ~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~----~~~~~~~~~~~-s~~~~~g~~~~pk  314 (493)
T PTZ00421        256 LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM----NERLTFCSSYS-SVEPHKGLCMMPK  314 (493)
T ss_pred             cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee----CCceEEEeecc-CCCCCcceEeccc
Confidence            222345667789999999998874 5  9999994    34444443322 2456777777764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3e-31  Score=258.05  Aligned_cols=245  Identities=25%  Similarity=0.430  Sum_probs=219.1

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEeeCC-CEEEEEeCCCcEEE
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRV  291 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i~i  291 (504)
                      .+..+|...|.+++...+|.+|++|+.|.++++|.++++    -++....+|+..|.+++++..+ .+|+++|.|+++++
T Consensus       359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~  438 (775)
T KOG0319|consen  359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL  438 (775)
T ss_pred             EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence            378899999999997778899999999999999987443    3455677999999999997644 58999999999999


Q ss_pred             EeCCCCCC------cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEE
Q 010669          292 WQGSEDGN------YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF  365 (504)
Q Consensus       292 wd~~~~~~------~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  365 (504)
                      |++.....      +.+..+...|...|++++++|+.+.|++||.|++.++|+++.......+.     +|..++.|+.|
T Consensus       439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-----GH~RGvw~V~F  513 (775)
T KOG0319|consen  439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-----GHTRGVWCVSF  513 (775)
T ss_pred             ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee-----CCccceEEEEe
Confidence            99876221      11122345799999999999999999999999999999999888888776     88999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC
Q 010669          366 HPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP  444 (504)
Q Consensus       366 ~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~  444 (504)
                      +|..+++++++.|++|+||.+.+..++.+|.||...|..+.|-.+|..|++++.|| |++|++.+..+..++..|  ...
T Consensus       514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H--~Dr  591 (775)
T KOG0319|consen  514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH--NDR  591 (775)
T ss_pred             ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc--cce
Confidence            99999999999999999999999999999999999999999999999999999999 999999999999999987  789


Q ss_pred             eeEEEECCCCCEEEEEeCc--EEEEE
Q 010669          445 TNSVDFDHSGSYLAVASAD--IRVYQ  468 (504)
Q Consensus       445 v~~i~~~~~g~~l~~~~~d--i~vw~  468 (504)
                      |++++.++.+.++++|+.|  +.+|.
T Consensus       592 vWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  592 VWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eEEEeecCccceeEecCCCeEEEEee
Confidence            9999999999999999999  88885

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=5e-31  Score=256.53  Aligned_cols=272  Identities=24%  Similarity=0.389  Sum_probs=235.1

Q ss_pred             CCCCCeEEEEe-ccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC-C
Q 010669          221 TSKPGIVSLDI-HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED-G  298 (504)
Q Consensus       221 ~~~~~I~~~~~-s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~-~  298 (504)
                      +..+.|..++| .|+.++|++++..+.+++|+..+..+. .+.||+..|.++....+|.+|++|+.|.++++|.++.+ .
T Consensus       321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~  399 (775)
T KOG0319|consen  321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS  399 (775)
T ss_pred             CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence            34567888885 567789999999999999998877665 88999999999996567889999999999999988443 2


Q ss_pred             CcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEE---ee-cCCCCCCCCCeEEEEECCCCCEEE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQ---VS-DAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~---~~-~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                      ...++....+|+..|.+++++..+ .+|+++|.|+++++|++...+....   +. ......|...|+|++++|+.+++|
T Consensus       400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA  479 (775)
T KOG0319|consen  400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA  479 (775)
T ss_pred             hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE
Confidence            234566677999999999997654 5899999999999999987322111   10 001236788999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      +|+.|.+.+||++.......++.||...|.|+.|+++.+.|++++.|. |+||.+.+..+++++.+|  ...|..+.|-.
T Consensus       480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH--~~aVlra~F~~  557 (775)
T KOG0319|consen  480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH--TSAVLRASFIR  557 (775)
T ss_pred             ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc--cceeEeeeeee
Confidence            999999999999999999999999999999999999999999999998 999999999999999988  67999999999


Q ss_pred             CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      +|..|++++.|  +++|++    ++..|+.+++.|  ++.|.++...+.+-
T Consensus       558 ~~~qliS~~adGliKlWni----kt~eC~~tlD~H--~DrvWaL~~~~~~~  602 (775)
T KOG0319|consen  558 NGKQLISAGADGLIKLWNI----KTNECEMTLDAH--NDRVWALSVSPLLD  602 (775)
T ss_pred             CCcEEEeccCCCcEEEEec----cchhhhhhhhhc--cceeEEEeecCccc
Confidence            99999999999  999999    889999999999  99999998887653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.98  E-value=1e-29  Score=238.50  Aligned_cols=277  Identities=21%  Similarity=0.314  Sum_probs=227.0

Q ss_pred             cccCCCCCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      -..+|...|.+++|-|... ++++|+.|++|.+|+=.-.+...++..|..-|.|+.|+|||+++++++.||+|.+||-.+
T Consensus       142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt  221 (603)
T KOG0318|consen  142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT  221 (603)
T ss_pred             eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence            4567899999999999776 799999999999999776777788889999999999999999999999999999999888


Q ss_pred             CCCcceeEEec---cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC---------------------
Q 010669          297 DGNYDCKHTLK---DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG---------------------  352 (504)
Q Consensus       297 ~~~~~~~~~~~---~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------------------  352 (504)
                      +   ..+..+.   +|.+.|.+++|+||+..|++++.|.+++|||+.+.+++..+....                     
T Consensus       222 g---e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl  298 (603)
T KOG0318|consen  222 G---EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL  298 (603)
T ss_pred             c---cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence            6   5555555   899999999999999999999999999999998876665543211                     


Q ss_pred             -----------------CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee-----------ee----------
Q 010669          353 -----------------TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV-----------AK----------  394 (504)
Q Consensus       353 -----------------~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~-----------~~----------  394 (504)
                                       ..+|...|+++..+||+.+|++|+.||.|.-||..++..-           ..          
T Consensus       299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~  378 (603)
T KOG0318|consen  299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF  378 (603)
T ss_pred             CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence                             1478889999999999999999999999999998654211           00          


Q ss_pred             ----------e------------------------------------------eCC--------CCCeEEEEEcCCCcEE
Q 010669          395 ----------F------------------------------------------DGH--------VGAVTAISFSENGYYL  414 (504)
Q Consensus       395 ----------~------------------------------------------~~~--------~~~i~~l~~s~~g~~l  414 (504)
                                +                                          ..+        .....+++++|++..+
T Consensus       379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v  458 (603)
T KOG0318|consen  379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV  458 (603)
T ss_pred             EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence                      0                                          000        1124678899999999


Q ss_pred             EEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCce
Q 010669          415 ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAA  491 (504)
Q Consensus       415 ~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v  491 (504)
                      +.|+.|+ |++|.+.............+..+++.++|+||+.||+++...  +.+|++.+..   .....+--|  ++.|
T Consensus       459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~---~~~~~w~FH--takI  533 (603)
T KOG0318|consen  459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE---VKTNRWAFH--TAKI  533 (603)
T ss_pred             EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc---eecceeeee--eeeE
Confidence            9999999 999999876655444445568899999999999999999877  9999984421   123334346  8999


Q ss_pred             eEEEEeecCcc
Q 010669          492 SFLFLFVLGQT  502 (504)
Q Consensus       492 ~~l~~~~~g~~  502 (504)
                      .+++++|+++.
T Consensus       534 ~~~aWsP~n~~  544 (603)
T KOG0318|consen  534 NCVAWSPNNKL  544 (603)
T ss_pred             EEEEeCCCceE
Confidence            99999999864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.2e-30  Score=257.80  Aligned_cols=248  Identities=23%  Similarity=0.387  Sum_probs=221.0

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      -+..|.++|..++|+|++.++++||.|-.|+||+..+.+++.++.||-+.|..+.|++.-.+++++|.|.+|+||++.+.
T Consensus        46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr  125 (1202)
T KOG0292|consen   46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR  125 (1202)
T ss_pred             hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEE-----------------e-------ecCCC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ-----------------V-------SDAGT  353 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~-----------------~-------~~~~~  353 (504)
                         .++..+.+|+..|.|..|||....++++|.|.+|++||+..-+....                 +       ...-.
T Consensus       126 ---~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL  202 (1202)
T KOG0292|consen  126 ---KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL  202 (1202)
T ss_pred             ---ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence               89999999999999999999999999999999999999853211000                 0       00113


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC
Q 010669          354 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL  430 (504)
Q Consensus       354 ~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~  430 (504)
                      .+|..+|+-++|||.-.+|++|+.|..|++|.+...+  .+.+..+|.+.|+++-|+|...++++.++|+ |+|||+.+.
T Consensus       203 EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR  282 (1202)
T KOG0292|consen  203 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR  282 (1202)
T ss_pred             cccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence            5899999999999999999999999999999997655  3556789999999999999999999999998 999999999


Q ss_pred             cceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEee
Q 010669          431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVA  470 (504)
Q Consensus       431 ~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~  470 (504)
                      +.++++...  ....+.++-+|..+.+++|.+. +.||.+.
T Consensus       283 t~v~tfrre--ndRFW~laahP~lNLfAAgHDsGm~VFkle  321 (1202)
T KOG0292|consen  283 TSVQTFRRE--NDRFWILAAHPELNLFAAGHDSGMIVFKLE  321 (1202)
T ss_pred             cceeeeecc--CCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence            999998765  5788999999999999988877 8888874

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=5.8e-32  Score=241.35  Aligned_cols=237  Identities=23%  Similarity=0.430  Sum_probs=205.1

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      +..+|.+.|.|+.|.  .+.+++|+.|.+|+|||+++++++.++-+|...|..+.|+  +.++++++.|.++.+||+...
T Consensus       232 ~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sp  307 (499)
T KOG0281|consen  232 ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASP  307 (499)
T ss_pred             hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCc
Confidence            567899999999986  5699999999999999999999999999999999999995  568999999999999999876


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                      ....+.+.+.+|...|+.+.|+  .+++++++.|.+|++|++.++..+..+.     +|..+|.|+.+.  |+++++|++
T Consensus       308 s~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-----gHkRGIAClQYr--~rlvVSGSS  378 (499)
T KOG0281|consen  308 TDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-----GHKRGIACLQYR--DRLVVSGSS  378 (499)
T ss_pred             hHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-----cccccceehhcc--CeEEEecCC
Confidence            5556667788999999999995  6799999999999999999999998886     788889888774  889999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeee-------ecCCCCCCeeEEE
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF-------ESSDSETPTNSVD  449 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~-------~~~~~~~~v~~i~  449 (504)
                      |.+|++||+..|.++..+.||..-|.|+.|  |.+.+++|+.|| |++||+..+...+..       ....+.+.|..+.
T Consensus       379 DntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ  456 (499)
T KOG0281|consen  379 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ  456 (499)
T ss_pred             CceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence            999999999999999999999999999999  778999999999 999999875433111       1123467899999


Q ss_pred             ECCCCCEEEEEeCc--EEEEEeec
Q 010669          450 FDHSGSYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       450 ~~~~g~~l~~~~~d--i~vw~~~~  471 (504)
                      |+  ...+++++.|  |-|||+..
T Consensus       457 FD--~fqIvsssHddtILiWdFl~  478 (499)
T KOG0281|consen  457 FD--EFQIISSSHDDTILIWDFLN  478 (499)
T ss_pred             ec--ceEEEeccCCCeEEEEEcCC
Confidence            95  3455555555  99999944

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3.6e-29  Score=221.94  Aligned_cols=262  Identities=22%  Similarity=0.315  Sum_probs=226.7

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC--CCcEEEEeCCCCCCc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA--DKTVRVWQGSEDGNY  300 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~--dg~i~iwd~~~~~~~  300 (504)
                      ...|.++.|+++|.++++++.|.++++||..+++.++++..+.-.|..++|....+.++.++.  |.+|+..++.+.   
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN---   90 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN---   90 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC---
Confidence            557999999999999999999999999999999999999988888999999877777776665  889999999886   


Q ss_pred             ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010669          301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL  380 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~  380 (504)
                      +.++.+.||...|++++.+|-++.|++++.|++|++||++..++...+..       ..-..++|+|+|.++|++...+.
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-------~~~pi~AfDp~GLifA~~~~~~~  163 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-------SGRPIAAFDPEGLIFALANGSEL  163 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-------CCCcceeECCCCcEEEEecCCCe
Confidence            78999999999999999999999999999999999999998887776652       23467899999999999998889


Q ss_pred             EEEEEcCCC--ceeeeee---CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC-eeEEEECCC
Q 010669          381 VKIWDVKSQ--ANVAKFD---GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP-TNSVDFDHS  453 (504)
Q Consensus       381 I~iwd~~~~--~~~~~~~---~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~-v~~i~~~~~  453 (504)
                      |++||+|+.  .+..+|.   +.....+.|.|||||++|+.++..+ +++.|.-+|....++..+..... ..+.+|.||
T Consensus       164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd  243 (311)
T KOG1446|consen  164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD  243 (311)
T ss_pred             EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence            999999974  3444443   3456899999999999999999998 99999999998888887654332 357889999


Q ss_pred             CCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          454 GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       454 g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      ++++++|+.|  |.+|++    +++..+..+.+- +.+++.++.|.|.
T Consensus       244 s~Fvl~gs~dg~i~vw~~----~tg~~v~~~~~~-~~~~~~~~~fnP~  286 (311)
T KOG1446|consen  244 SKFVLSGSDDGTIHVWNL----ETGKKVAVLRGP-NGGPVSCVRFNPR  286 (311)
T ss_pred             CcEEEEecCCCcEEEEEc----CCCcEeeEecCC-CCCCccccccCCc
Confidence            9999999998  999999    778888888883 3778888888764

>PTZ00420 coronin; Provisional

Probab=99.98  E-value=3.8e-29  Score=251.85  Aligned_cols=249  Identities=19%  Similarity=0.312  Sum_probs=195.4

Q ss_pred             EeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCC-----cceeEEeccCCcCeE
Q 010669          241 GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGN-----YDCKHTLKDHTAEVQ  314 (504)
Q Consensus       241 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~  314 (504)
                      |+.+|.|.+|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.+++.     ..+...+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            667889999998877888899999999999999996 78999999999999999976421     123456788999999


Q ss_pred             EEEEccCCCE-EEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee
Q 010669          315 AVTVHATNKY-FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA  393 (504)
Q Consensus       315 ~l~~~p~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~  393 (504)
                      +++|+|++.. +++++.|++|++||+++++....+.      +...|.+++|+|+|.+|++++.|+.|+|||+++++.+.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~  203 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS  203 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence            9999998875 5789999999999999998766553      23579999999999999999999999999999999999


Q ss_pred             eeeCCCCCeEE-----EEEcCCCcEEEEEeCC----c-EEEEEcCC-CcceeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669          394 KFDGHVGAVTA-----ISFSENGYYLATAAHD----G-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVASA  462 (504)
Q Consensus       394 ~~~~~~~~i~~-----l~~s~~g~~l~s~~~d----~-v~vwd~~~-~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~  462 (504)
                      .+.+|.+.+..     ..|++++.+|++++.+    + |+|||+++ ..++..+......+.+......++|.++++|+.
T Consensus       204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG  283 (568)
T PTZ00420        204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG  283 (568)
T ss_pred             EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence            99999876543     2356888888887655    3 99999996 455555544332333333444556888888888


Q ss_pred             c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          463 D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       463 d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      |  |++|++...     .+..+..+....++.+++|.|.-
T Consensus       284 D~tIr~~e~~~~-----~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        284 DGNCRYYQHSLG-----SIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCeEEEEEccCC-----cEEeecccccCCCccceEEcccc
Confidence            8  999999432     23333333336788899998864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.8e-29  Score=239.12  Aligned_cols=240  Identities=30%  Similarity=0.578  Sum_probs=215.1

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ...|...+..+.|+++++++++++.+|.|++|++.+++.+..+..|...|.++.|++++.++++++.||.|.+||+.+. 
T Consensus        47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  125 (289)
T cd00200          47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-  125 (289)
T ss_pred             EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-
Confidence            3457778899999999999999999999999999988888888899999999999999888888888999999999864 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                        .....+..|...|.++.|+|++.++++++.||.|++||+++++....+.     .+...+.++.|+|+++.+++++.+
T Consensus       126 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~  198 (289)
T cd00200         126 --KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-----GHTGEVNSVAFSPDGEKLLSSSSD  198 (289)
T ss_pred             --EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-----cCccccceEEECCCcCEEEEecCC
Confidence              5667777899999999999999999988889999999999888777665     455689999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEE
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL  457 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l  457 (504)
                      |.|++||++.++.+..+..|...+.++.|++++.++++++.++ |++||+.+++....+..+  ...+.+++|++++.+|
T Consensus       199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l  276 (289)
T cd00200         199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRL  276 (289)
T ss_pred             CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEE
Confidence            9999999999999988888989999999999999999888677 999999988887777744  5789999999999999


Q ss_pred             EEEeCc--EEEEE
Q 010669          458 AVASAD--IRVYQ  468 (504)
Q Consensus       458 ~~~~~d--i~vw~  468 (504)
                      ++++.|  +++|+
T Consensus       277 ~~~~~d~~i~iw~  289 (289)
T cd00200         277 ASGSADGTIRIWD  289 (289)
T ss_pred             EEecCCCeEEecC
Confidence            999988  98885

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=5.1e-30  Score=220.89  Aligned_cols=265  Identities=21%  Similarity=0.315  Sum_probs=226.8

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE--EcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT--TLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ..+|...|.+++|+.+|..|++|+.|+++.+|++.......  .+.+|.+.|-.++|+| +...|++++.|.+|++||++
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r   95 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR   95 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence            44577789999999999999999999999999998775544  3468999999999988 66789999999999999999


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      .+   ++...+... +.-.-+.|+|+|.+++.++.|..|.+.|.++.+......      ....+.-++|+.++.+|+.-
T Consensus        96 ~~---k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~------~~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   96 SG---KCTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ------FKFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             cC---cEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc------ccceeeeeeecCCCCEEEEe
Confidence            86   666666543 344568899999999999999999999999887766553      23468889999988888888


Q ss_pred             eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669          376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG  454 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g  454 (504)
                      +..|+|.|.....-+++..++.|.....||.|+|+|++||+|+.|. +.+||+...-+++.+...  .-+|..+.|+.+|
T Consensus       166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl--dwpVRTlSFS~dg  243 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL--DWPVRTLSFSHDG  243 (313)
T ss_pred             cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--cCceEEEEeccCc
Confidence            8889999999999999999999999999999999999999999998 999999999888888766  6799999999999


Q ss_pred             CEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          455 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       455 ~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ++||++++|  |-|=++    +++..+..++.   +++-..+++.|...+
T Consensus       244 ~~lASaSEDh~IDIA~v----etGd~~~eI~~---~~~t~tVAWHPk~~L  286 (313)
T KOG1407|consen  244 RMLASASEDHFIDIAEV----ETGDRVWEIPC---EGPTFTVAWHPKRPL  286 (313)
T ss_pred             ceeeccCccceEEeEec----ccCCeEEEeec---cCCceeEEecCCCce
Confidence            999999999  777777    56666666643   667777888776544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-30  Score=247.69  Aligned_cols=238  Identities=21%  Similarity=0.359  Sum_probs=218.2

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      .-||.++.|-+..+++++|+.|..|+||+..+++.+..|..|.+-|.+++.+|...+++++|.|-+|++||.+.  .+.+
T Consensus        55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~--~wa~  132 (794)
T KOG0276|consen   55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--EWAC  132 (794)
T ss_pred             ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC--ceee
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999975  4789


Q ss_pred             eEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCC
Q 010669          303 KHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEA  379 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg  379 (504)
                      .+++.+|...|.+++|+| |.+.|++++.|++|++|.+.+..+..++.     +|..+|+|++|-+  |..+|++|+.|.
T Consensus       133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-----gHekGVN~Vdyy~~gdkpylIsgaDD~  207 (794)
T KOG0276|consen  133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-----GHEKGVNCVDYYTGGDKPYLISGADDL  207 (794)
T ss_pred             eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-----ccccCcceEEeccCCCcceEEecCCCc
Confidence            999999999999999999 56799999999999999999988888876     8889999999998  446999999999


Q ss_pred             cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669          380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA  458 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~  458 (504)
                      +|+|||..+..++.++.||...|+.+.|+|.-.++++|++|| |+||.-.+.+...++...  ...+++++-.+.++.++
T Consensus       208 tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~  285 (794)
T KOG0276|consen  208 TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIA  285 (794)
T ss_pred             eEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEE
Confidence            999999999999999999999999999999999999999999 999999988877777665  56899999988888888


Q ss_pred             EEeCc-EEEEEe
Q 010669          459 VASAD-IRVYQV  469 (504)
Q Consensus       459 ~~~~d-i~vw~~  469 (504)
                      +|.+. ..+..+
T Consensus       286 vG~Deg~i~v~l  297 (794)
T KOG0276|consen  286 VGFDEGSVTVKL  297 (794)
T ss_pred             EeccCCcEEEEc
Confidence            88776 444454

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.3e-30  Score=227.96  Aligned_cols=275  Identities=19%  Similarity=0.387  Sum_probs=224.4

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC------------------CceEEEcccCccceeEEEEeeCCCEE
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------------------GQIVTTLSGHSKKVTSVKFVTEGDLF  280 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~------------------~~~~~~~~~h~~~v~~l~~s~~~~~l  280 (504)
                      ...|++++.+.+|++||.++++|+.|..|+|+|++.                  ...++++..|...|+++.|+|....|
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL  187 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL  187 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence            467899999999999999999999999999999751                  13578888999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCe
Q 010669          281 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY  360 (504)
Q Consensus       281 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  360 (504)
                      ++|+.|++|++||+......+..+.+ ....+|.++.|||.|.+++.|..-.++++||+++-++...-.  ....|...|
T Consensus       188 iS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan--Pd~qht~ai  264 (430)
T KOG0640|consen  188 ISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN--PDDQHTGAI  264 (430)
T ss_pred             EeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC--cccccccce
Confidence            99999999999999764221222223 345789999999999999999999999999999988876554  245788999


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee-CCCC-CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669          361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVG-AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       361 ~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~-~~~~-~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~  437 (504)
                      +++.+++.|++.++|+.||.|++||--+++++.++. .|.+ .|.+..|..||+|+++.+.|. |++|.+.+++.+..+.
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt  344 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT  344 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence            999999999999999999999999999999998885 4654 799999999999999999998 9999999999999988


Q ss_pred             cCCCCC---CeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          438 SSDSET---PTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       438 ~~~~~~---~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      +....+   --+...|.....|++.-.+.   +.-||-..  .....+..+ +|  ++.+..+.-+|.+.
T Consensus       345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt--adr~~l~sl-gH--n~a~R~i~HSP~~p  409 (430)
T KOG0640|consen  345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART--ADRVALLSL-GH--NGAVRWIVHSPVEP  409 (430)
T ss_pred             cCCcccchhhhhhhhhcCccceEEccccccCceeeccccc--hhhhhhccc-CC--CCCceEEEeCCCCC
Confidence            753212   23456788888888876654   77788622  112222233 66  88888888777653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=7.3e-31  Score=224.57  Aligned_cols=266  Identities=18%  Similarity=0.319  Sum_probs=236.1

Q ss_pred             cCCCCCeEEEEecc---CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          220 KTSKPGIVSLDIHY---SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       220 ~~~~~~I~~~~~s~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      .+|..+|..++|||   +|-+|++++.||.-.+-+-++|.-+.+|.+|.+.|++..+..+....++++.|-+-++||.-+
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t   90 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT   90 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence            57899999999986   788999999999998888889999999999999999999988888899999999999999988


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                      +   ..++.+ .|...|..++|+.|.++|++|+.++.+++||++..+....-    ..+|...|..+-|....+.|+++.
T Consensus        91 g---delhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E----~~ghtg~Ir~v~wc~eD~~iLSSa  162 (334)
T KOG0278|consen   91 G---DELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE----ISGHTGGIRTVLWCHEDKCILSSA  162 (334)
T ss_pred             h---hhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh----hcCCCCcceeEEEeccCceEEeec
Confidence            6   455665 58889999999999999999999999999999876543222    237889999999999888999999


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY  456 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~  456 (504)
                      .|++||+||.++++.+.++. ...+|+++.++++|.+|.++...+|.+||..+...++.++.+   ..|.+..++|+..+
T Consensus       163 dd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P---~nV~SASL~P~k~~  238 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP---CNVESASLHPKKEF  238 (334)
T ss_pred             cCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc---cccccccccCCCce
Confidence            99999999999999999887 567899999999999998887777999999999999988875   57999999999999


Q ss_pred             EEEEeCc--EEEEEeeccCccceeEEEc-cCCCCCCceeEEEEeecCccc
Q 010669          457 LAVASAD--IRVYQVASVKADWNCIKTF-PDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       457 l~~~~~d--i~vw~~~~~~~~~~~i~~~-~~h~~~~~v~~l~~~~~g~~~  503 (504)
                      +++|++|  ++.||+    .++..+..+ .+|  .++|-|+.|+|+|..+
T Consensus       239 fVaGged~~~~kfDy----~TgeEi~~~nkgh--~gpVhcVrFSPdGE~y  282 (334)
T KOG0278|consen  239 FVAGGEDFKVYKFDY----NTGEEIGSYNKGH--FGPVHCVRFSPDGELY  282 (334)
T ss_pred             EEecCcceEEEEEec----cCCceeeecccCC--CCceEEEEECCCCcee
Confidence            9999999  777787    678888886 888  8999999999999765

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.6e-29  Score=246.31  Aligned_cols=269  Identities=19%  Similarity=0.279  Sum_probs=236.4

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|++.|.++++|.+...+++|+ .+.+++|+..+.++++++..  +.+.+..|.|.++++++|...|.+.+||+... 
T Consensus       369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-  444 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASA-  444 (888)
T ss_pred             eccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehh-
Confidence            457999999999999888888776 56899999999999999974  37999999999999999999999999999875 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC-----CeEEE--EeecCCCCCCCCCeEEEEECCCCCE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-----GICLT--QVSDAGTDGRPEGYTSAAFHPDGLI  371 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~-----~~~~~--~~~~~~~~~~~~~v~~~~~~pdg~~  371 (504)
                        ..+.++..|.+.|++++.+||+..+++||.|.+|++||..-     +...+  .+.....-.-...|.|+.++|||++
T Consensus       445 --~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  445 --SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             --hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence              55666779999999999999999999999999999999742     11111  1110001123467999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEE
Q 010669          372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF  450 (504)
Q Consensus       372 l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~  450 (504)
                      |+++--|.+|+||-+.+.+....+.||.-||.|+..|||+..+++|+.|. |++|-+.-|.+-+++..|  ...|.++.|
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH--dDSvm~V~F  600 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH--DDSVMSVQF  600 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc--cCceeEEEE
Confidence            99999999999999999999999999999999999999999999999997 999999999999998877  679999999


Q ss_pred             CCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          451 DHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       451 ~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      .|....++++|.|  ++-||-    ..+.+++.+++|  ...|.+++++|+|.
T Consensus       601 ~P~~~~FFt~gKD~kvKqWDg----~kFe~iq~L~~H--~~ev~cLav~~~G~  647 (888)
T KOG0306|consen  601 LPKTHLFFTCGKDGKVKQWDG----EKFEEIQKLDGH--HSEVWCLAVSPNGS  647 (888)
T ss_pred             cccceeEEEecCcceEEeech----hhhhhheeeccc--hheeeeeEEcCCCC
Confidence            9999999999999  999996    789999999999  88999999999994

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.1e-29  Score=230.02  Aligned_cols=272  Identities=17%  Similarity=0.288  Sum_probs=234.2

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE----EE---c-----------ccCccceeEEEEeeCCC
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV----TT---L-----------SGHSKKVTSVKFVTEGD  278 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~----~~---~-----------~~h~~~v~~l~~s~~~~  278 (504)
                      ..+..|.-+|.+|+++|++++.++++.+|+|.-|++.+++..    ..   +           ++|...+.+++.++||+
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            446678889999999999999999999999999998877532    11   0           26888999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC
Q 010669          279 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE  358 (504)
Q Consensus       279 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  358 (504)
                      +|++|+.|..|.||+.++.   ..++.+.+|.+.|.+++|-...+.+++++.|++|++|+++....+.++.     +|..
T Consensus       216 ylatgg~d~~v~Iw~~~t~---ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-----GHqd  287 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTL---EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-----GHQD  287 (479)
T ss_pred             EEEecCCCceEEEecCccc---chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-----CCcc
Confidence            9999999999999999886   6777899999999999999888899999999999999999877766665     8889


Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669          359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       359 ~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~  437 (504)
                      .|..+....-++.+-+|+.|+++++|++.. ..-..|.+|.+.+-|++|- |...+++|+++| |.+|++.+.+++.+..
T Consensus       288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~  365 (479)
T KOG0299|consen  288 GVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSR  365 (479)
T ss_pred             ceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEee
Confidence            999999999999999999999999999944 3344677889999999998 556899999999 9999999988877665


Q ss_pred             cCCC----------CCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          438 SSDS----------ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       438 ~~~~----------~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      ..++          ..+|++++..|...++++|+.+  +++|.+..+-...+.+..++-   .+.|++++|+.+|+
T Consensus       366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSGK  438 (479)
T ss_pred             ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCCC
Confidence            4221          2278999999999999999988  999999776666777777764   78999999999997

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6e-30  Score=219.59  Aligned_cols=236  Identities=21%  Similarity=0.365  Sum_probs=201.6

Q ss_pred             CCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCC-CceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCC
Q 010669          223 KPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       223 ~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      .+.+..++|+++. +.+++++.||++++||+.. ..++..++.|...|.++.|++ ++..++++|.||+|++|+....  
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--  137 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--  137 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--
Confidence            5678999999864 5888999999999999643 367889999999999999998 5567888899999999998775  


Q ss_pred             cceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeC
Q 010669          300 YDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTS  377 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~  377 (504)
                       ..+.++.+|...|....|+| .++.|+++|.||++++||++.......+.     .|...+.|+.|+. +.+.+++|+.
T Consensus       138 -~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-----ah~~Eil~cdw~ky~~~vl~Tg~v  211 (311)
T KOG0277|consen  138 -NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-----AHNSEILCCDWSKYNHNVLATGGV  211 (311)
T ss_pred             -cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-----eccceeEeecccccCCcEEEecCC
Confidence             67888999999999999999 57899999999999999998754444454     6678999999999 7789999999


Q ss_pred             CCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECC-
Q 010669          378 EALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDH-  452 (504)
Q Consensus       378 dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~-  452 (504)
                      |+.|++||+++. .++..+.+|.-+|..++|||. ...|++++.|- ++|||..... .+.++..|  ...+..+.|++ 
T Consensus       212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~  289 (311)
T KOG0277|consen  212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLF  289 (311)
T ss_pred             CceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccc
Confidence            999999999975 578899999999999999995 56889999996 9999998554 34444433  67788999988 


Q ss_pred             CCCEEEEEeCc--EEEEE
Q 010669          453 SGSYLAVASAD--IRVYQ  468 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~  468 (504)
                      ++.++|.++.|  +.||+
T Consensus       290 ~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  290 DPGQVASTGWDELLYVWN  307 (311)
T ss_pred             cCceeeecccccceeeec
Confidence            56789999988  99997

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=5.1e-29  Score=224.24  Aligned_cols=245  Identities=18%  Similarity=0.272  Sum_probs=209.8

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|+..|+++.|+.+|.+||||+.+|.|.||+..++.....+...-..|.=+.|+|.+..|+.|+.||.+-+|.+...
T Consensus       101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~  180 (399)
T KOG0296|consen  101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ  180 (399)
T ss_pred             EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc
Confidence            34679999999999999999999999999999999999888888766677888999999999999999999999999875


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC------------------------
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT------------------------  353 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------------------------  353 (504)
                         ...+.+.+|+.++++-.|.|+|+.++++..||+|++||+.++.+...+.....                        
T Consensus       181 ---~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~  257 (399)
T KOG0296|consen  181 ---ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA  257 (399)
T ss_pred             ---ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence               56677889999999999999999999999999999999999988777651100                        


Q ss_pred             --------------C--------CCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEc
Q 010669          354 --------------D--------GRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS  408 (504)
Q Consensus       354 --------------~--------~~~~~v~~~~~~p---dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s  408 (504)
                                    .        .+...+.|+.+.|   .-.+.|+|+.||+|.|||+...+..+.+. |..+|+.+.|-
T Consensus       258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~  336 (399)
T KOG0296|consen  258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWL  336 (399)
T ss_pred             EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEc
Confidence                          0        1111222333333   45678999999999999998877666665 88899999998


Q ss_pred             CCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          409 ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       409 ~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      + ..+|++++.+| |+.||.|+|++...+.+|  ...|.+++++|++++++++|.|  .+||++
T Consensus       337 ~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH--~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  337 N-TDYLLTACANGKVRQWDARTGQLKFTYTGH--QMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             C-cchheeeccCceEEeeeccccceEEEEecC--chheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            8 67888888898 999999999999999887  7899999999999999999999  888886

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=3.8e-29  Score=219.68  Aligned_cols=242  Identities=23%  Similarity=0.367  Sum_probs=211.3

Q ss_pred             eeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEe
Q 010669          215 SHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQ  293 (504)
Q Consensus       215 ~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd  293 (504)
                      +.-..++|++.|..+.|.+|++.++++|.|.+|+.||.++|+.++.+++|.+-|+.+.-+.-|. ++.+++.||++++||
T Consensus        82 N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D  161 (338)
T KOG0265|consen   82 NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD  161 (338)
T ss_pred             ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence            3345668999999999999999999999999999999999999999999999999998554443 677899999999999


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                      ++..   .+++++. ..-+++++.|..++..+++|+-|+.|++||++.+.....+.     +|...|+.+..+|+|.++.
T Consensus       162 ~R~k---~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-----Gh~DtIt~lsls~~gs~ll  232 (338)
T KOG0265|consen  162 IRKK---EAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-----GHADTITGLSLSRYGSFLL  232 (338)
T ss_pred             eccc---chhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEee-----cccCceeeEEeccCCCccc
Confidence            9875   4555543 35679999999999999999999999999999999888887     8889999999999999999


Q ss_pred             EEeCCCcEEEEEcCCC----ceeeeeeCCCC----CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC
Q 010669          374 TGTSEALVKIWDVKSQ----ANVAKFDGHVG----AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP  444 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~----~~~~~~~~~~~----~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~  444 (504)
                      +-+.|.++++||++-.    +++..+.+|..    ....++|+|++..+.+|+.|. +++||......+..+.++  .+.
T Consensus       233 snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh--~gs  310 (338)
T KOG0265|consen  233 SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH--YGS  310 (338)
T ss_pred             cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc--cee
Confidence            9999999999999853    45777776532    456789999999999999998 999999988888877776  789


Q ss_pred             eeEEEECCCCCEEEEEeCcEEEE
Q 010669          445 TNSVDFDHSGSYLAVASADIRVY  467 (504)
Q Consensus       445 v~~i~~~~~g~~l~~~~~di~vw  467 (504)
                      |+.+.|+|...+|.+++.|-+||
T Consensus       311 vn~~~Fhp~e~iils~~sdk~i~  333 (338)
T KOG0265|consen  311 VNEVDFHPTEPIILSCSSDKTIY  333 (338)
T ss_pred             EEEeeecCCCcEEEEeccCceeE
Confidence            99999999999999999994444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2.1e-28  Score=264.36  Aligned_cols=237  Identities=21%  Similarity=0.343  Sum_probs=201.3

Q ss_pred             CCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669          223 KPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNY  300 (504)
Q Consensus       223 ~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~  300 (504)
                      ...|.+++|++ ++.+|++++.||+|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++   
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~---  608 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG---  608 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC---
Confidence            45688999987 478999999999999999999999999999999999999997 7889999999999999999875   


Q ss_pred             ceeEEeccCCcCeEEEEEc-cCCCEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          301 DCKHTLKDHTAEVQAVTVH-ATNKYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~~-p~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                      .++..+..+ ..|.++.|+ +++.+|++|+.||.|++||++++.. ...+.     +|...|.++.|. ++.+|++++.|
T Consensus       609 ~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-----~h~~~V~~v~f~-~~~~lvs~s~D  681 (793)
T PLN00181        609 VSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-----GHSKTVSYVRFV-DSSTLVSSSTD  681 (793)
T ss_pred             cEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-----CCCCCEEEEEEe-CCCEEEEEECC
Confidence            556666544 679999995 5789999999999999999987653 33332     677899999997 78899999999


Q ss_pred             CcEEEEEcCCC------ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec-----------CC
Q 010669          379 ALVKIWDVKSQ------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES-----------SD  440 (504)
Q Consensus       379 g~I~iwd~~~~------~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~-----------~~  440 (504)
                      +.|++||++.+      .++..+.+|...+.+++|++++.+|++|+.|+ |++|+......+..+..           ..
T Consensus       682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~  761 (793)
T PLN00181        682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD  761 (793)
T ss_pred             CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence            99999999743      56788999999999999999999999999998 99999876544333221           12


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          441 SETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       441 ~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      +...|.+++|+|++.+|++|+.+  |+||++
T Consensus       762 ~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        762 ASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            24569999999999999999988  999986

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.9e-28  Score=243.56  Aligned_cols=245  Identities=18%  Similarity=0.243  Sum_probs=194.0

Q ss_pred             ccccCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCCC-------ceEEEcccCccceeEEEEeeCC-CEEEEEeCCC
Q 010669          217 PLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADK  287 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg  287 (504)
                      ++..+|.+.|++++|+| ++++|++|+.||+|++||+.++       ..+..+.+|...|.+++|+|++ ++|++|+.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            34678999999999999 8899999999999999998765       3467889999999999999975 6899999999


Q ss_pred             cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC-CeEEEEEC
Q 010669          288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE-GYTSAAFH  366 (504)
Q Consensus       288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~~  366 (504)
                      +|+|||+.++   .....+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.     +|.. ....+.|.
T Consensus       149 tVrIWDl~tg---~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-----~H~~~~~~~~~w~  220 (493)
T PTZ00421        149 VVNVWDVERG---KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-----AHASAKSQRCLWA  220 (493)
T ss_pred             EEEEEECCCC---eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-----cCCCCcceEEEEc
Confidence            9999999875   5677788999999999999999999999999999999999998877765     3333 34567889


Q ss_pred             CCCCEEEEEe----CCCcEEEEEcCCCc-eeeeeeCC-CCCeEEEEEcCCCcEEEEEeC-Cc-EEEEEcCCCcceeeeec
Q 010669          367 PDGLILGTGT----SEALVKIWDVKSQA-NVAKFDGH-VGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       367 pdg~~l~~g~----~dg~I~iwd~~~~~-~~~~~~~~-~~~i~~l~~s~~g~~l~s~~~-d~-v~vwd~~~~~~~~~~~~  438 (504)
                      +++..+++++    .|+.|++||+++.. ++.....+ ...+....|++++.+|++++. |+ |++||++++..+.....
T Consensus       221 ~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~  300 (493)
T PTZ00421        221 KRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY  300 (493)
T ss_pred             CCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence            9877776654    47899999998764 34333323 345666789999999988874 77 99999999887766544


Q ss_pred             CCCCCCeeEEEECCCCCEEEEEeCcEEEEEee
Q 010669          439 SDSETPTNSVDFDHSGSYLAVASADIRVYQVA  470 (504)
Q Consensus       439 ~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~  470 (504)
                      . ...++..++|.|.-..=+-.++=.++|.+.
T Consensus       301 ~-s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~  331 (493)
T PTZ00421        301 S-SVEPHKGLCMMPKWSLDTRKCEIARFYALT  331 (493)
T ss_pred             c-CCCCCcceEecccccccccceeeeEEEEec
Confidence            2 245678899988543222222226777763

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.2e-29  Score=216.18  Aligned_cols=263  Identities=21%  Similarity=0.311  Sum_probs=210.4

Q ss_pred             EEEEeccC-CCEEEEE-------eCCCcEEEEcCCCCceEEEcc--cCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCC
Q 010669          227 VSLDIHYS-KDVIATG-------GVDTNAVLFDRPSGQIVTTLS--GHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       227 ~~~~~s~~-~~~l~sg-------~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~  295 (504)
                      .++.|||- .++|+++       ...|.+.|.++...+-+..+.  .-.+.+..++|+++ .+.+++++.||++++||..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            57888882 2333333       247899999986444443332  24567999999984 5578999999999999965


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILG  373 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~  373 (504)
                      ..  ..+++.++.|..+|.++.|++. +..++++|.|++|++||...++.+.++.     +|...|...+|+| .+++++
T Consensus        92 ~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-----gh~~~Iy~a~~sp~~~nlfa  164 (311)
T KOG0277|consen   92 MP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-----GHNSCIYQAAFSPHIPNLFA  164 (311)
T ss_pred             CC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-----CCccEEEEEecCCCCCCeEE
Confidence            43  3688889999999999999984 5678888999999999999999998876     7889999999999 889999


Q ss_pred             EEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCc-ceeeeecCCCCCCeeEEEE
Q 010669          374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDF  450 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~  450 (504)
                      +++.||.+++||++..-....+..|...|.|+.|+. |.+.|++|+.|+ |+.||+|+.+ ++..+..  |...|..+.|
T Consensus       165 s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g--h~~AVRkvk~  242 (311)
T KOG0277|consen  165 SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG--HGLAVRKVKF  242 (311)
T ss_pred             EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC--CceEEEEEec
Confidence            999999999999987655555888999999999998 678899999998 9999999876 3444444  4789999999


Q ss_pred             CCCC-CEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee--cCccc
Q 010669          451 DHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV--LGQTC  503 (504)
Q Consensus       451 ~~~g-~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~--~g~~~  503 (504)
                      +|.. ..|++++.|  ++||+..   +.-.++.++..|  +..|..+++++  .|++|
T Consensus       243 Sph~~~lLaSasYDmT~riw~~~---~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vA  295 (311)
T KOG0277|consen  243 SPHHASLLASASYDMTVRIWDPE---RQDSAIETVDHH--TEFVCGLDWSLFDPGQVA  295 (311)
T ss_pred             CcchhhHhhhccccceEEecccc---cchhhhhhhhcc--ceEEeccccccccCceee
Confidence            9964 688999999  9999983   345567777777  77888887764  34444

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.9e-29  Score=210.78  Aligned_cols=251  Identities=18%  Similarity=0.293  Sum_probs=216.2

Q ss_pred             HHhhcccccee--ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEE
Q 010669          206 ALERYTQLASH--PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG  283 (504)
Q Consensus       206 ~~~~~~~~~~~--~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  283 (504)
                      .++.|.+....  .-+.+|...|..++.+.|+..+++|+.|..+.+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|
T Consensus        40 tvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sg  119 (307)
T KOG0316|consen   40 TVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASG  119 (307)
T ss_pred             eEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEec
Confidence            34455554432  2356888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEE
Q 010669          284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA  363 (504)
Q Consensus       284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  363 (504)
                      +.|.++++||-+. ..+++++.+....+.|.++...  +..|++|+.||+++.||++.|+......       ..+|+|+
T Consensus       120 sfD~s~r~wDCRS-~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~-------g~pit~v  189 (307)
T KOG0316|consen  120 SFDSSVRLWDCRS-RSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF-------GHPITSV  189 (307)
T ss_pred             cccceeEEEEccc-CCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc-------CCcceeE
Confidence            9999999999987 4567888888888899999885  7889999999999999999998766554       2579999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeE--EEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC
Q 010669          364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVT--AISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD  440 (504)
Q Consensus       364 ~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~--~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~  440 (504)
                      +|++|++..++++.|+++++.|-.+|+.+..+++|...-.  ..+++....++++|++|| |++||+.....+..+..+ 
T Consensus       190 s~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~-  268 (307)
T KOG0316|consen  190 SFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV-  268 (307)
T ss_pred             EecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC-
Confidence            9999999999999999999999999999999999976443  456777788999999999 999999999888887765 


Q ss_pred             CCCC-eeEEEECCCCCEEEEEeCc-EEEEE
Q 010669          441 SETP-TNSVDFDHSGSYLAVASAD-IRVYQ  468 (504)
Q Consensus       441 ~~~~-v~~i~~~~~g~~l~~~~~d-i~vw~  468 (504)
                       ... +.++.++|....++++... +..|.
T Consensus       269 -~~v~v~dl~~hp~~~~f~~A~~~~~~~~~  297 (307)
T KOG0316|consen  269 -STVIVTDLSCHPTMDDFITATGHGDLFWY  297 (307)
T ss_pred             -CceeEEeeecccCccceeEecCCceecee
Confidence             334 8899999987766666655 66664

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.5e-28  Score=222.14  Aligned_cols=274  Identities=19%  Similarity=0.309  Sum_probs=220.4

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC---EEEEEeCCCcEEEEeCCCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD---LFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~---~l~s~s~dg~i~iwd~~~~  297 (504)
                      .|.+-|.++...  ++.+++|++||.+++||.. |+....+.+|.++|.+++|.-...   .|++++.|.++++|.++.+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            367778888877  7899999999999999975 889999999999999999865333   5999999999999988765


Q ss_pred             CC-cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe-----EEEE---------------eecCCCCCC
Q 010669          298 GN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-----CLTQ---------------VSDAGTDGR  356 (504)
Q Consensus       298 ~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-----~~~~---------------~~~~~~~~~  356 (504)
                      .. ..+.....||...|.++...++|..+++|+.|.+|.+|+..+..     ....               .......+|
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            32 23344455999999999999999999999999999999932110     0000               000013488


Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc-ee
Q 010669          357 PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FR  434 (504)
Q Consensus       357 ~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~-~~  434 (504)
                      ..+|.++.|++ ...+++++.|.+|+.||+.++..+.++.+ ...++|+.++|...+|++|+.|. +++||.|++.- +.
T Consensus       260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v  337 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV  337 (423)
T ss_pred             ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence            99999999998 66788999999999999999998888874 46899999999999999999998 99999998642 23


Q ss_pred             eeecCCCCCCeeEEEECCCCCE-EEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcccC
Q 010669          435 SFESSDSETPTNSVDFDHSGSY-LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTCS  504 (504)
Q Consensus       435 ~~~~~~~~~~v~~i~~~~~g~~-l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~s  504 (504)
                      ......|...|.++.|+|...| |++|+.|  +++||+   +..+..+..+.+|  .+.|.++++...+-+.|
T Consensus       338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv---RS~k~plydI~~h--~DKvl~vdW~~~~~IvS  405 (423)
T KOG0313|consen  338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV---RSTKAPLYDIAGH--NDKVLSVDWNEGGLIVS  405 (423)
T ss_pred             EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe---ccCCCcceeeccC--CceEEEEeccCCceEEe
Confidence            3333444789999999997654 6677888  999999   3456689999999  89999999987765543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.6e-29  Score=231.11  Aligned_cols=228  Identities=22%  Similarity=0.336  Sum_probs=201.3

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      +..|++++|-.||++|++|+..|.|+|||..+...++.+.+|+.+|..+.|+|+ +..+++|+.|+.+++||+.+.   .
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a---~  144 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA---Y  144 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---E
Confidence            567999999999999999999999999997776778899999999999999995 557889999999999999885   3


Q ss_pred             eeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669          302 CKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA  379 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg  379 (504)
                      ....+.+|++.|.|.+|+|.. ..+++||.||.|++||++.. ..+..+      .|..+|..+.+-|.|.++++++. .
T Consensus       145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el------nhg~pVe~vl~lpsgs~iasAgG-n  217 (487)
T KOG0310|consen  145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL------NHGCPVESVLALPSGSLIASAGG-N  217 (487)
T ss_pred             EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe------cCCCceeeEEEcCCCCEEEEcCC-C
Confidence            466788999999999999954 58999999999999999987 444444      56789999999999999999865 5


Q ss_pred             cEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEE
Q 010669          380 LVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL  457 (504)
Q Consensus       380 ~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l  457 (504)
                      .|+|||+-+| +.+..+..|...|+|+.+..++..|++|+-|+ |++||+.+.+.+..+..   .++|.+++.+|+++.+
T Consensus       218 ~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~  294 (487)
T KOG0310|consen  218 SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTV  294 (487)
T ss_pred             eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceE
Confidence            7999999855 45555566999999999999999999999999 99999999999988887   4799999999999999


Q ss_pred             EEEeCc
Q 010669          458 AVASAD  463 (504)
Q Consensus       458 ~~~~~d  463 (504)
                      ++|..+
T Consensus       295 viGmsn  300 (487)
T KOG0310|consen  295 VIGMSN  300 (487)
T ss_pred             EEeccc
Confidence            999988

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.3e-28  Score=214.35  Aligned_cols=261  Identities=17%  Similarity=0.284  Sum_probs=216.6

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC--EEEEEeCCCcEEEEeCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD--LFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~s~dg~i~iwd~~~  296 (504)
                      +..|.++|++++.+  +.++++||.|-+|+|||+.....+..+-.|.+.|+++.|.+.-.  .|++|+.||.|.+|+...
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~  116 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS  116 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence            56789999999986  89999999999999999999988999999999999999988654  899999999999998754


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                         |.++..+++|.+.|+.++.||.+++.++.+.|+.+++||+-+|+.-......      ...+.+.|+|.|.+|+.+.
T Consensus       117 ---W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~------~~at~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  117 ---WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK------NKATLVSWSPQGDHFVVSG  187 (362)
T ss_pred             ---eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC------CcceeeEEcCCCCEEEEEe
Confidence               6899999999999999999999999999999999999999998876665422      2345599999999999987


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEE--CCC
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF--DHS  453 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~--~~~  453 (504)
                      .++ |-+|.+.+......+.. ...+.|+.|. ++..|++|++++ |.+||.....+...+..|  ...|.++.+  .|+
T Consensus       188 ~~~-i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~~~~  262 (362)
T KOG0294|consen  188 RNK-IDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYTNPE  262 (362)
T ss_pred             ccE-EEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--hhheeeeEEEecCC
Confidence            764 88999887766555542 2567888887 567888888888 999999988888888777  678888874  567


Q ss_pred             CCEEEEEeCc--EEEEEeeccCc-cceeEEEccCCCCCCceeEEEEee
Q 010669          454 GSYLAVASAD--IRVYQVASVKA-DWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       454 g~~l~~~~~d--i~vw~~~~~~~-~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      +.||++++.|  |+|||++...+ ..+.+..+..   +..++|+....
T Consensus       263 ~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~---~~RltCl~~~~  307 (362)
T KOG0294|consen  263 HEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT---NVRLTCLRVKL  307 (362)
T ss_pred             ceEEEEeccCceEEEEEccccccCCcceeEEeec---CCccceeeehh
Confidence            8999999999  99999866433 2345555544   66788887653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=8.6e-29  Score=231.67  Aligned_cols=274  Identities=20%  Similarity=0.309  Sum_probs=210.3

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc----eEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ----IVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd  293 (504)
                      ..+|...|.++++.|.|-.|++|+.|..|++||+....    ..+.+. .....|+++.|++.|..|++.+.....+|+|
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D  242 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD  242 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence            35567789999999999999999999999999986432    122222 3445799999999999988888888999999


Q ss_pred             CCCCCCc---------ceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCCCCCCeEE
Q 010669          294 GSEDGNY---------DCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       294 ~~~~~~~---------~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~  362 (504)
                      -......         .-...-++|...++|.+|||.. ..|++++.||++++||+...+. ...+......+..-.++.
T Consensus       243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts  322 (641)
T KOG0772|consen  243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS  322 (641)
T ss_pred             cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence            6542111         1123346899999999999965 5899999999999999986543 333433334456678999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCce---eeeeeCCCC--CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc-ceee
Q 010669          363 AAFHPDGLILGTGTSEALVKIWDVKSQAN---VAKFDGHVG--AVTAISFSENGYYLATAAHDG-VKLWDLRKLK-NFRS  435 (504)
Q Consensus       363 ~~~~pdg~~l~~g~~dg~I~iwd~~~~~~---~~~~~~~~~--~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~-~~~~  435 (504)
                      ++|++||++||+|+.||.|.+||.++...   ...-+.|..  .|+||.||++|++|++-+.|+ +++||++..+ ++..
T Consensus       323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~  402 (641)
T KOG0772|consen  323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV  402 (641)
T ss_pred             eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence            99999999999999999999999865432   223356776  899999999999999999998 9999999865 4555


Q ss_pred             eecCCCCCCeeEEEECCCCCEEEEEeCc--------EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          436 FESSDSETPTNSVDFDHSGSYLAVASAD--------IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       436 ~~~~~~~~~v~~i~~~~~g~~l~~~~~d--------i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      .........-+.++|+|+.++|++|..-        +.+|+-    .+...+..+.--  +..|..+.+.|
T Consensus       403 ~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~----~t~d~v~ki~i~--~aSvv~~~Whp  467 (641)
T KOG0772|consen  403 RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR----MTLDTVYKIDIS--TASVVRCLWHP  467 (641)
T ss_pred             hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec----cceeeEEEecCC--CceEEEEeecc
Confidence            5444445667889999999999998653        677775    667777777543  55666666554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.3e-28  Score=236.51  Aligned_cols=240  Identities=18%  Similarity=0.264  Sum_probs=212.1

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc-CccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      +...+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|.+++|.  +..+.+|+.||.|..+|++.
T Consensus       212 l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~  289 (484)
T KOG0305|consen  212 LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI  289 (484)
T ss_pred             eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEec
Confidence            4444578999999999999999999999999999999999999998 99999999996  77899999999999999988


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEE
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTG  375 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g  375 (504)
                      ...  ...++.+|...|..+.|+++++++++|+.|+.+.|||.........+.     .|...|..++|+| ...+||+|
T Consensus       290 ~~~--~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-----~H~aAVKA~awcP~q~~lLAsG  362 (484)
T KOG0305|consen  290 SQH--VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-----EHTAAVKALAWCPWQSGLLATG  362 (484)
T ss_pred             chh--hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-----ccceeeeEeeeCCCccCceEEc
Confidence            642  222478999999999999999999999999999999997777777765     7889999999999 77788886


Q ss_pred             e--CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC--c-EEEEEcCCCcceeeeecCCCCCCeeEEEE
Q 010669          376 T--SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSFESSDSETPTNSVDF  450 (504)
Q Consensus       376 ~--~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d--~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~  450 (504)
                      +  .|+.|++||..++..+.... ..+.|.+|.|++..+-|+++...  + |.||+..+.+.+..+.+|  ...|..+++
T Consensus       363 GGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~  439 (484)
T KOG0305|consen  363 GGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLAL  439 (484)
T ss_pred             CCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEE
Confidence            5  68999999999999988877 45689999999988777766433  4 999999998888888877  678999999


Q ss_pred             CCCCCEEEEEeCc--EEEEEe
Q 010669          451 DHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       451 ~~~g~~l~~~~~d--i~vw~~  469 (504)
                      +|||..+++|+.|  +++|++
T Consensus       440 SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  440 SPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             CCCCCEEEEecccCcEEeccc
Confidence            9999999999998  999998

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=2.6e-28  Score=220.68  Aligned_cols=242  Identities=24%  Similarity=0.409  Sum_probs=205.4

Q ss_pred             cccCCCCCeEEEEeccCCC---EEEEEeCCCcEEEEcCCCCce----EEEcccCccceeEEEEeeCCCEEEEEeCCCcEE
Q 010669          218 LHKTSKPGIVSLDIHYSKD---VIATGGVDTNAVLFDRPSGQI----VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR  290 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~---~l~sg~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~  290 (504)
                      ...+|.++|.+++|.-...   .+++++.|.++++|..+.++.    +..-.||...|-++...++|..+++|+.|.+|+
T Consensus       139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lk  218 (423)
T KOG0313|consen  139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLK  218 (423)
T ss_pred             EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceee
Confidence            4568999999888764433   699999999999998877644    233359999999999999999999999999999


Q ss_pred             EEeCCCC----------------------CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 010669          291 VWQGSED----------------------GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV  348 (504)
Q Consensus       291 iwd~~~~----------------------~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~  348 (504)
                      ||+....                      +...++.++.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+
T Consensus       219 iWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~  297 (423)
T KOG0313|consen  219 IWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL  297 (423)
T ss_pred             ecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee
Confidence            9993221                      11245667889999999999997 778999999999999999999988877


Q ss_pred             ecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc---eeeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc-EE
Q 010669          349 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA---NVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VK  423 (504)
Q Consensus       349 ~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~---~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~  423 (504)
                      ..      ...+.|+.++|..++|++|+.|..|++||.|++.   ...+|.+|.+.|..+.|+| +.+.|++|+.|+ ++
T Consensus       298 ~~------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k  371 (423)
T KOG0313|consen  298 TT------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK  371 (423)
T ss_pred             ec------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence            53      3579999999999999999999999999999863   4567889999999999999 567889999998 99


Q ss_pred             EEEcCCCc-ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          424 LWDLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       424 vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      +||+|+.+ ++..+..|  ...|.++.|. .+.++++||.|  ++|+..
T Consensus       372 lWDvRS~k~plydI~~h--~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  372 LWDVRSTKAPLYDIAGH--NDKVLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             EEEeccCCCcceeeccC--CceEEEEecc-CCceEEeccCcceEEEecc
Confidence            99999887 77777666  7899999997 56789999999  888875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.6e-28  Score=239.35  Aligned_cols=257  Identities=24%  Similarity=0.355  Sum_probs=225.9

Q ss_pred             hHHhhccccceeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe
Q 010669          205 DALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS  284 (504)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s  284 (504)
                      +.++-|.......+..-...-+.+..|-|.++++++|...|.+.+||+.+...+.+++.|.+.|++++.+||+..+++||
T Consensus       394 ~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s  473 (888)
T KOG0306|consen  394 ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS  473 (888)
T ss_pred             CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEec
Confidence            44555655544444444456789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCC----CCccee------EEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 010669          285 ADKTVRVWQGSED----GNYDCK------HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD  354 (504)
Q Consensus       285 ~dg~i~iwd~~~~----~~~~~~------~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  354 (504)
                      .|.+|++||..-.    +.....      .++ .-...|.|+.++|||++++++--|.++++|-+++.+....+.     
T Consensus       474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-----  547 (888)
T KOG0306|consen  474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-----  547 (888)
T ss_pred             CCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-----
Confidence            9999999996421    111111      112 235679999999999999999999999999999988777765     


Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcce
Q 010669          355 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF  433 (504)
Q Consensus       355 ~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~  433 (504)
                      +|.-+|.|+.++||++++++|+.|..|++|-+.=|.+-..|-+|...|.++.|.|....+++++.|+ |+-||-.+...+
T Consensus       548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i  627 (888)
T KOG0306|consen  548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI  627 (888)
T ss_pred             ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh
Confidence            8889999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             eeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          434 RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       434 ~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      +.+..|  ...|++++.+|+|.|++++|.|  |++|.-
T Consensus       628 q~L~~H--~~ev~cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  628 QKLDGH--HSEVWCLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             eeeccc--hheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence            999887  6799999999999999999998  999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=3.5e-29  Score=232.91  Aligned_cols=244  Identities=20%  Similarity=0.396  Sum_probs=213.1

Q ss_pred             eeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCC-CEEEEEeCCCcEEEEe
Q 010669          215 SHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQ  293 (504)
Q Consensus       215 ~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd  293 (504)
                      ....+.+|..+|.+++|+.+|..+++++.|+.+++||+++|+++..+. -...++|+.|+|++ +.+++|+.|+.|+.||
T Consensus       250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wD  328 (503)
T KOG0282|consen  250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWD  328 (503)
T ss_pred             eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEe
Confidence            344567899999999999999999999999999999999999999887 34568999999988 7899999999999999


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                      ++.+   +.++.+..|-+.|..+.|-++|.++++++.|++++||+.+.+-.+..+..    .......|+..+|++.+++
T Consensus       329 iRs~---kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~----~~~hsmP~~~~~P~~~~~~  401 (503)
T KOG0282|consen  329 IRSG---KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD----PEMHTMPCLTLHPNGKWFA  401 (503)
T ss_pred             ccch---HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc----hhhccCcceecCCCCCeeh
Confidence            9987   67777888999999999999999999999999999999998877766543    2334678999999999999


Q ss_pred             EEeCCCcEEEEEcCCC---ceeeeeeCCC--CCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeE
Q 010669          374 TGTSEALVKIWDVKSQ---ANVAKFDGHV--GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS  447 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~---~~~~~~~~~~--~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~  447 (504)
                      +-+.|+.|.+|.+...   .....|.+|.  +.-..+.|||||.+|++|+.+| +.+||.++.+.+..+..+  ...+..
T Consensus       402 aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah--~~~ci~  479 (503)
T KOG0282|consen  402 AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH--DQPCIG  479 (503)
T ss_pred             hhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC--CcceEE
Confidence            9999999999997543   2344677775  4567789999999999999999 999999999999999887  689999


Q ss_pred             EEECCCC-CEEEEEeCc--EEEEE
Q 010669          448 VDFDHSG-SYLAVASAD--IRVYQ  468 (504)
Q Consensus       448 i~~~~~g-~~l~~~~~d--i~vw~  468 (504)
                      +.|+|.. ..+|+++.+  |++|+
T Consensus       480 v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  480 VDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEecCCCcceeEecccCceeEecC
Confidence            9999965 678888888  99985

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=3.8e-29  Score=214.08  Aligned_cols=244  Identities=22%  Similarity=0.317  Sum_probs=217.9

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      -+.+|++.|++..++.+....++++.|-+.+|||.-+|..+.++. |..-|.+++|+.|.++|++|+.+..++|||++..
T Consensus        54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p  132 (334)
T KOG0278|consen   54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP  132 (334)
T ss_pred             eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCC
Confidence            356899999999999988899999999999999999999998887 8888999999999999999999999999999875


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                      .  .+...+.+|.+.|..+.|....+.|++++.|++|++||.+++..+..+..      +..|+++.+++||.++.++ .
T Consensus       133 ~--App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~------~s~VtSlEvs~dG~ilTia-~  203 (334)
T KOG0278|consen  133 K--APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF------NSPVTSLEVSQDGRILTIA-Y  203 (334)
T ss_pred             C--CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec------CCCCcceeeccCCCEEEEe-c
Confidence            4  55667789999999999999999999999999999999999999998863      3679999999999988776 4


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY  456 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~  456 (504)
                      .+.|.+||.++...+..++ ....|.+.+++|+...+++|++|. ++.||..++..+..+. ..|.++|.++.|+|+|..
T Consensus       204 gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~  281 (334)
T KOG0278|consen  204 GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGEL  281 (334)
T ss_pred             CceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCce
Confidence            5679999999998888887 446799999999999999999998 9999999999888762 233689999999999999


Q ss_pred             EEEEeCc--EEEEEeeccC
Q 010669          457 LAVASAD--IRVYQVASVK  473 (504)
Q Consensus       457 l~~~~~d--i~vw~~~~~~  473 (504)
                      .++|+.|  |++|+....+
T Consensus       282 yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  282 YASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             eeccCCCceEEEEEecCCC
Confidence            9999999  9999986654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1.3e-27  Score=240.07  Aligned_cols=253  Identities=28%  Similarity=0.519  Sum_probs=224.4

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE-cccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT-LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      .+...+.+..|.  +.++++++.+++|++||..++..+.. +.+|.+.|+++++..-+.++++|+.|.++++||..++  
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--  281 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--  281 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--
Confidence            346678888888  67899999999999999999998888 9999999999999876889999999999999998887  


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA  379 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg  379 (504)
                       .|.+.+.+|.+.|.++...  +.++++|+.|.+|++|++.++..+..+.     +|..+|.++.++  +.++++|+.||
T Consensus       282 -~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~-----~h~~~V~~v~~~--~~~lvsgs~d~  351 (537)
T KOG0274|consen  282 -ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR-----GHTGPVNCVQLD--EPLLVSGSYDG  351 (537)
T ss_pred             -cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEec-----cccccEEEEEec--CCEEEEEecCc
Confidence             8999999999999999774  5678889999999999999999998886     588999999998  88999999999


Q ss_pred             cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC-cceeeeecCCCCCCeeEEEECCCCCEE
Q 010669          380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDHSGSYL  457 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~-~~~~~~~~~~~~~~v~~i~~~~~g~~l  457 (504)
                      +|++||+.+++++..+.+|...|.++.+... ..+++|+.|+ |++||+++. +++.++..+  ...+..+.  ..+++|
T Consensus       352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h--~~~v~~l~--~~~~~L  426 (537)
T KOG0274|consen  352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH--TSLVSSLL--LRDNFL  426 (537)
T ss_pred             eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC--cccccccc--ccccee
Confidence            9999999999999999999999999998655 8999999998 999999999 899988876  44554444  467899


Q ss_pred             EEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669          458 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       458 ~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~  497 (504)
                      ++++.|  |++||.    .++++++++.++ +.+.|+++.+.
T Consensus       427 vs~~aD~~Ik~WD~----~~~~~~~~~~~~-~~~~v~~l~~~  463 (537)
T KOG0274|consen  427 VSSSADGTIKLWDA----EEGECLRTLEGR-HVGGVSALALG  463 (537)
T ss_pred             EeccccccEEEeec----ccCceeeeeccC-CcccEEEeecC
Confidence            999999  999998    889999999883 26777777664

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.4e-27  Score=218.15  Aligned_cols=237  Identities=25%  Similarity=0.371  Sum_probs=206.9

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+..++|++++|.+++..+++++.|+.+++|++...+...++.+|++.|+++.|......+++|+.|.+|++||+... 
T Consensus       215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-  293 (459)
T KOG0288|consen  215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-  293 (459)
T ss_pred             hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-
Confidence            3455678999999999999999999999999999999999999999999999999876666999999999999999874 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                        .|..++. ..+.+.+|..+  ...+++|-.|+.|++||+++......+...      +.|+++..+++|..+.+++.|
T Consensus       294 --~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g------g~vtSl~ls~~g~~lLsssRD  362 (459)
T KOG0288|consen  294 --YCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG------GRVTSLDLSMDGLELLSSSRD  362 (459)
T ss_pred             --heecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC------cceeeEeeccCCeEEeeecCC
Confidence              6666553 33556777665  567889999999999999999988888632      479999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeeeCC----CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669          379 ALVKIWDVKSQANVAKFDGH----VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~  453 (504)
                      .++.++|+++......+...    ....+.+.|||++.|+++|+.|| |+||++.++++...+........|++++|+|.
T Consensus       363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s  442 (459)
T KOG0288|consen  363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS  442 (459)
T ss_pred             CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence            99999999998877777532    23588999999999999999999 99999999999988887765557999999999


Q ss_pred             CCEEEEEeCc--EEEE
Q 010669          454 GSYLAVASAD--IRVY  467 (504)
Q Consensus       454 g~~l~~~~~d--i~vw  467 (504)
                      |.+|++++.+  +.+|
T Consensus       443 G~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  443 GSGLLSADKQKAVTLW  458 (459)
T ss_pred             CchhhcccCCcceEec
Confidence            9999999988  8888

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=7.7e-28  Score=222.86  Aligned_cols=246  Identities=20%  Similarity=0.367  Sum_probs=199.4

Q ss_pred             ccCCCCCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCCc----------eEEEcccCccceeEEEEeeCC-CEEEEEeCC
Q 010669          219 HKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQ----------IVTTLSGHSKKVTSVKFVTEG-DLFLTGSAD  286 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~----------~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~d  286 (504)
                      ...|.+.|+.+.+-|... ++++++..+.|+|||.....          .-..+.+|.+.-.+++|++.. -.|++|+.|
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            345788999999999654 77888889999999975431          122678999988899999844 479999999


Q ss_pred             CcEEEEeCCCCCC----cceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCC--eEEEEeecCCCCCCCCC
Q 010669          287 KTVRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEG  359 (504)
Q Consensus       287 g~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~  359 (504)
                      ++|++||+...+.    ......+.+|...|..++||+. ...|++++.|+.+.|||++++  +....     ..+|...
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~-----~~ah~~~  274 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS-----VKAHSAE  274 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc-----ccccCCc
Confidence            9999999986543    3456678899999999999994 568899999999999999963  22222     3378899


Q ss_pred             eEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCccee-
Q 010669          360 YTSAAFHP-DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFR-  434 (504)
Q Consensus       360 v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~-  434 (504)
                      +.|++|+| ++.+||+|+.|++|.+||+|+. +++.++.+|...|.+|.|+|+ ...|++++.|+ +.|||+.+-...+ 
T Consensus       275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~  354 (422)
T KOG0264|consen  275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS  354 (422)
T ss_pred             eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence            99999999 7889999999999999999985 578899999999999999995 57888889998 9999997543322 


Q ss_pred             -----------eeecCCCCCCeeEEEECCCCCEEEE-EeCc--EEEEEe
Q 010669          435 -----------SFESSDSETPTNSVDFDHSGSYLAV-ASAD--IRVYQV  469 (504)
Q Consensus       435 -----------~~~~~~~~~~v~~i~~~~~g~~l~~-~~~d--i~vw~~  469 (504)
                                 .|.-..|...|..+.|+|+..++++ .++|  +.||+.
T Consensus       355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence                       1333345788999999999987665 4555  999997

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=3e-27  Score=237.36  Aligned_cols=242  Identities=24%  Similarity=0.471  Sum_probs=215.4

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|.++|.+++|..-++++++|+.|.+++|||..+|++...+.+|.+.|.++..  .+.++++|+.|.+|++|++.++ 
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~-  321 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNG-  321 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCc-
Confidence            5689999999999987889999999999999999999999999999999999977  5567888999999999999976 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                        .++..+.+|.++|.++..+  +.++++|+.||+|++||+.+++++..+.     +|...|.++.+.+. ..+++|+.|
T Consensus       322 --~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-----gH~~~V~sl~~~~~-~~~~Sgs~D  391 (537)
T KOG0274|consen  322 --ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-----GHTGRVYSLIVDSE-NRLLSGSLD  391 (537)
T ss_pred             --ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-----CCcceEEEEEecCc-ceEEeeeec
Confidence              7888888899999999997  8999999999999999999999999987     78899999988776 899999999


Q ss_pred             CcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669          379 ALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY  456 (504)
Q Consensus       379 g~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~  456 (504)
                      +.|++||+++. +++..+.+|..-+.++.+  .+.+|++++.|+ |++||...+.+.+.+... +...|..+++.  ...
T Consensus       392 ~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~  466 (537)
T KOG0274|consen  392 TTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEE  466 (537)
T ss_pred             cceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cce
Confidence            99999999999 999999999998877776  788999999999 999999999999999874 35678888776  456


Q ss_pred             EEEEeCc--EEEEEeeccCccceeEEEc
Q 010669          457 LAVASAD--IRVYQVASVKADWNCIKTF  482 (504)
Q Consensus       457 l~~~~~d--i~vw~~~~~~~~~~~i~~~  482 (504)
                      +++++.+  +++||+    .++.++..+
T Consensus       467 il~s~~~~~~~l~dl----~~~~~~~~l  490 (537)
T KOG0274|consen  467 ILCSSDDGSVKLWDL----RSGTLIRTL  490 (537)
T ss_pred             EEEEecCCeeEEEec----ccCchhhhh
Confidence            6666666  999999    555555544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.9e-28  Score=232.53  Aligned_cols=238  Identities=21%  Similarity=0.421  Sum_probs=206.4

Q ss_pred             EEEec-cCCCEEEEEeCCCcEEEEcCCCCc------eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669          228 SLDIH-YSKDVIATGGVDTNAVLFDRPSGQ------IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY  300 (504)
Q Consensus       228 ~~~~s-~~~~~l~sg~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  300 (504)
                      ++..+ |.+++|++||.||.|++|+.....      .+.+++.|...|+.+....+++.|+++|.|-+|++|+...+. .
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~  107 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-T  107 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-c
Confidence            44444 356789999999999999976432      367788999999999999999999999999999999998754 4


Q ss_pred             ceeEEeccCCcCeEEEEE-ccCCCEEEEEeCCCeEEEEECCCCeE--EEEee---cCCCC-CCCCCeEEEEECCCCCEEE
Q 010669          301 DCKHTLKDHTAEVQAVTV-HATNKYFVTASLDNTWCFYDLSSGIC--LTQVS---DAGTD-GRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~-~p~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~---~~~~~-~~~~~v~~~~~~pdg~~l~  373 (504)
                      .|..++..|.+.|.|+++ -++...+++||.|+.|.+||++++..  +..+.   ..... ++...|++++.++.|..|+
T Consensus       108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv  187 (735)
T KOG0308|consen  108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV  187 (735)
T ss_pred             hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence            678888999999999999 77888999999999999999998733  22221   11122 6778999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      +|+..+.|++||.++.+.+..+.||...|..+..++||..+++++.|+ |++||+...+++.++..|  ...|+++..+|
T Consensus       188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH--~e~VWaL~~~~  265 (735)
T KOG0308|consen  188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH--KEGVWALQSSP  265 (735)
T ss_pred             ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec--cCceEEEeeCC
Confidence            999999999999999999999999999999999999999999999999 999999999999999887  55699999999


Q ss_pred             CCCEEEEEeCcEEEEE
Q 010669          453 SGSYLAVASADIRVYQ  468 (504)
Q Consensus       453 ~g~~l~~~~~di~vw~  468 (504)
                      +-.++++|+.|..|+.
T Consensus       266 sf~~vYsG~rd~~i~~  281 (735)
T KOG0308|consen  266 SFTHVYSGGRDGNIYR  281 (735)
T ss_pred             CcceEEecCCCCcEEe
Confidence            9999999999944443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.3e-27  Score=227.76  Aligned_cols=256  Identities=23%  Similarity=0.321  Sum_probs=220.9

Q ss_pred             EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe
Q 010669          227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL  306 (504)
Q Consensus       227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  306 (504)
                      .-++|+ ..+.|++|.. ..|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||....   ..+..+
T Consensus       181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~---k~~~~~  255 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ---KKTRTL  255 (484)
T ss_pred             hHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc---cccccc
Confidence            346788 4667777753 47999999999876666656889999999999999999999999999998775   566677


Q ss_pred             cc-CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 010669          307 KD-HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD  385 (504)
Q Consensus       307 ~~-h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd  385 (504)
                      .+ |...|.+++|.  +..+.+|+.|+.|..+|++..+.....    ..+|...|..+.|++|++++|+|+.|+.+.|||
T Consensus       256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~----~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd  329 (484)
T KOG0305|consen  256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST----LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD  329 (484)
T ss_pred             cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh----hhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence            77 99999999997  788999999999999999988766552    337889999999999999999999999999999


Q ss_pred             cCCCceeeeeeCCCCCeEEEEEcC-CCcEEEEEeC--Cc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEe
Q 010669          386 VKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAH--DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS  461 (504)
Q Consensus       386 ~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~--d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~  461 (504)
                      .....+...+..|..+|..++|+| ...+||+|+.  |+ |++||..++..+..+..   ...|.++.|++..+-|+++.
T Consensus       330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sth  406 (484)
T KOG0305|consen  330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTH  406 (484)
T ss_pred             CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEec
Confidence            988899999999999999999999 5678888764  45 99999999998888766   57899999999987666653


Q ss_pred             Cc----EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          462 AD----IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       462 ~d----i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ..    |.||++    .+.+.+..+.+|  ...|..++++|+|..
T Consensus       407 G~s~n~i~lw~~----ps~~~~~~l~gH--~~RVl~la~SPdg~~  445 (484)
T KOG0305|consen  407 GYSENQITLWKY----PSMKLVAELLGH--TSRVLYLALSPDGET  445 (484)
T ss_pred             CCCCCcEEEEec----cccceeeeecCC--cceeEEEEECCCCCE
Confidence            22    999999    668899999999  889999999999864

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.7e-26  Score=231.28  Aligned_cols=228  Identities=13%  Similarity=0.200  Sum_probs=178.4

Q ss_pred             cccCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCCCCc--------eEEEcccCccceeEEEEeeCCCE-EEEEeCCC
Q 010669          218 LHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQ--------IVTTLSGHSKKVTSVKFVTEGDL-FLTGSADK  287 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~--------~~~~~~~h~~~v~~l~~s~~~~~-l~s~s~dg  287 (504)
                      ...+|.++|.+++|+|+ +++|++|+.||+|+|||+.++.        .+..+.+|...|.+++|+|++.. |++++.||
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg  148 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS  148 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence            35689999999999997 7899999999999999997542        34467899999999999998875 57899999


Q ss_pred             cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCe-----EE
Q 010669          288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY-----TS  362 (504)
Q Consensus       288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-----~~  362 (504)
                      +|+|||+.++   .....+. |...|.+++|+|+|.+|++++.|+.|++||++++..+..+.     +|...+     ..
T Consensus       149 tIrIWDl~tg---~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-----gH~g~~~s~~v~~  219 (568)
T PTZ00420        149 FVNIWDIENE---KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-----IHDGGKNTKNIWI  219 (568)
T ss_pred             eEEEEECCCC---cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe-----cccCCceeEEEEe
Confidence            9999999875   3444454 56789999999999999999999999999999998887765     344333     33


Q ss_pred             EEECCCCCEEEEEeCCC----cEEEEEcCC-Cceeeeee--CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCccee
Q 010669          363 AAFHPDGLILGTGTSEA----LVKIWDVKS-QANVAKFD--GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR  434 (504)
Q Consensus       363 ~~~~pdg~~l~~g~~dg----~I~iwd~~~-~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~  434 (504)
                      ..|++++.+|++++.|+    .|+|||+++ ++++..+.  .+.+.+......++|.++++|+.|+ |++|++..+. +.
T Consensus       220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~  298 (568)
T PTZ00420        220 DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IR  298 (568)
T ss_pred             eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EE
Confidence            45678999999887764    799999995 55665543  2334444444456799999999998 9999998764 33


Q ss_pred             eeecCCCCCCeeEEEECCCCC
Q 010669          435 SFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       435 ~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      .+....+..++.+++|.|...
T Consensus       299 ~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        299 KVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             eecccccCCCccceEEccccc
Confidence            344333467788999999653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.2e-27  Score=204.50  Aligned_cols=257  Identities=21%  Similarity=0.325  Sum_probs=207.8

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC---ceEEEcccCccceeEEEEee--CCCEEEEEeCCCcEEEE
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVW  292 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~s~--~~~~l~s~s~dg~i~iw  292 (504)
                      +...|++.|..+....-|+.|+|++.|++|+||...+.   +++.++.+|.++|+.++|..  .|.+|+++++||.|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            45678889999988889999999999999999998754   56889999999999999964  79999999999999999


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCC-e-EEEEeecCCCCCCCCCeEEEEECCC
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSG-I-CLTQVSDAGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~-~-~~~~~~~~~~~~~~~~v~~~~~~pd  368 (504)
                      .-.++ .+........|...|++++|.|.  |-.|++++.||.|.+.+.+.. . ....+    ...|.-.+++++|.|-
T Consensus        86 ke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki----~~aH~~GvnsVswapa  160 (299)
T KOG1332|consen   86 KEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI----VFAHEIGVNSVSWAPA  160 (299)
T ss_pred             ecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh----hhccccccceeeecCc
Confidence            97764 77777888899999999999885  568999999999999988765 1 12222    2377889999999995


Q ss_pred             ---C-----------CEEEEEeCCCcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCC----cEEEEEeCCc-EEEEEc
Q 010669          369 ---G-----------LILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENG----YYLATAAHDG-VKLWDL  427 (504)
Q Consensus       369 ---g-----------~~l~~g~~dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g----~~l~s~~~d~-v~vwd~  427 (504)
                         |           +.|++|+.|..|+||+..+++  ...++.+|.+.|..++|.|.-    .+|++++.|+ |.||-.
T Consensus       161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             CCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence               5           569999999999999998753  445688999999999999963    5899999999 999987


Q ss_pred             CCCcceee-eecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEE
Q 010669          428 RKLKNFRS-FESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIK  480 (504)
Q Consensus       428 ~~~~~~~~-~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~  480 (504)
                      +....... -..+.....+.++.|+..|++|++++.|  +.+|.=+. ...|.++.
T Consensus       241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~-~Gkw~~v~  295 (299)
T KOG1332|consen  241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV-DGKWEEVG  295 (299)
T ss_pred             cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC-CCcEEEcc
Confidence            63321111 1122235679999999999999998887  99997532 23455543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=7.6e-28  Score=212.13  Aligned_cols=220  Identities=25%  Similarity=0.443  Sum_probs=190.1

Q ss_pred             EEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC------------C---CCcceeEEeccCCcCeEEEEEccCCC
Q 010669          259 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE------------D---GNYDCKHTLKDHTAEVQAVTVHATNK  323 (504)
Q Consensus       259 ~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~------------~---~~~~~~~~~~~h~~~v~~l~~~p~~~  323 (504)
                      ..+..|.+++.+.+|++||.++++|+.|..|+|.|++.            +   .....++++..|.++|+++.|||...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            45667999999999999999999999999999999761            1   11245788889999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee---eCCCC
Q 010669          324 YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF---DGHVG  400 (504)
Q Consensus       324 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~---~~~~~  400 (504)
                      .|++|+.|++|++||+......+.++..   ....+|.++.|||.|.+|++|..-..+++||+.+.++...-   ..|.+
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~---qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVF---QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHh---hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence            9999999999999999765433333211   22357999999999999999999999999999998876544   35889


Q ss_pred             CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccce
Q 010669          401 AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN  477 (504)
Q Consensus       401 ~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~  477 (504)
                      .|+++.++++|.+.++++.|| |++||--+++++.++........|.+..|..+|+|+++.|.|  +++|.+    .+++
T Consensus       263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi----~t~R  338 (430)
T KOG0640|consen  263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI----STGR  338 (430)
T ss_pred             ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee----cCCc
Confidence            999999999999999999999 999999999999999876667899999999999999999999  999999    6788


Q ss_pred             eEEEccCC
Q 010669          478 CIKTFPDL  485 (504)
Q Consensus       478 ~i~~~~~h  485 (504)
                      ++..+.|-
T Consensus       339 ~l~~YtGA  346 (430)
T KOG0640|consen  339 MLKEYTGA  346 (430)
T ss_pred             eEEEEecC
Confidence            88888764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.4e-27  Score=217.93  Aligned_cols=238  Identities=20%  Similarity=0.330  Sum_probs=203.5

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      .+|..+|..+.||||.++|++++.+..+.+||+.+|.....+. +|...+.+++|.|||..+++|+.|+++..||.+.. 
T Consensus       266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-  344 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-  344 (519)
T ss_pred             ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-
Confidence            4688999999999999999999999999999999999888775 45678999999999999999999999999998763 


Q ss_pred             CcceeEEeccC-CcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          299 NYDCKHTLKDH-TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       299 ~~~~~~~~~~h-~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                         ......+- ...|.+++..+||+++++.+.|..|++++.++......+.      ...+|++++++.||+++++.-.
T Consensus       345 ---~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis------e~~~its~~iS~d~k~~LvnL~  415 (519)
T KOG0293|consen  345 ---ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS------EEQPITSFSISKDGKLALVNLQ  415 (519)
T ss_pred             ---hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc------ccCceeEEEEcCCCcEEEEEcc
Confidence               22222222 2469999999999999999999999999998776554442      2368999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCC--CeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669          378 EALVKIWDVKSQANVAKFDGHVG--AVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~--~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~  453 (504)
                      +..|++||+...+.+..+.||..  .+..-+|-- |..++++|++|+ |+||+..+++++..+.+|  ...|++++|+|.
T Consensus       416 ~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH--s~~vNcVswNP~  493 (519)
T KOG0293|consen  416 DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH--SKTVNCVSWNPA  493 (519)
T ss_pred             cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC--cceeeEEecCCC
Confidence            99999999999999999999865  344455654 558999999999 999999999999999887  679999999997


Q ss_pred             CC-EEEEEeCc--EEEEEe
Q 010669          454 GS-YLAVASAD--IRVYQV  469 (504)
Q Consensus       454 g~-~l~~~~~d--i~vw~~  469 (504)
                      .. .+|++|+|  |+||..
T Consensus       494 ~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  494 DPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             CHHHhhccCCCCeEEEecC
Confidence            65 56777777  999986

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=7.7e-27  Score=237.31  Aligned_cols=249  Identities=17%  Similarity=0.282  Sum_probs=209.6

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC------------------CceEEEcccCccceeEEEEeeCCCE
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------------------GQIVTTLSGHSKKVTSVKFVTEGDL  279 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~------------------~~~~~~~~~h~~~v~~l~~s~~~~~  279 (504)
                      .+..|.+.|+|+.|++||++||+|++|+.|.||....                  .+.+..+.+|...|..++|+|++.+
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~  143 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL  143 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence            3567899999999999999999999999999998762                  1356778899999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-CCCCCCC
Q 010669          280 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA-GTDGRPE  358 (504)
Q Consensus       280 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~  358 (504)
                      |++++.|++|.|||..+.   ..+..+.+|.+.|..+.|.|-|+||++-+.|++|++|++.+....+.+... .......
T Consensus       144 lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T  220 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT  220 (942)
T ss_pred             EEEecccceEEEEccccc---eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence            999999999999998775   788899999999999999999999999999999999998776666555422 1122345


Q ss_pred             CeEEEEECCCCCEEEEEeC----CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcC-----CCc------------EEEEE
Q 010669          359 GYTSAAFHPDGLILGTGTS----EALVKIWDVKSQANVAKFDGHVGAVTAISFSE-----NGY------------YLATA  417 (504)
Q Consensus       359 ~v~~~~~~pdg~~l~~g~~----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~-----~g~------------~l~s~  417 (504)
                      .+..+.|+|||.+|++...    -.++.|.+-.+.+.-..|.||.+++.++.|+|     +..            .+|+|
T Consensus       221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg  300 (942)
T KOG0973|consen  221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG  300 (942)
T ss_pred             eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence            6789999999999998643    34788888878888889999999999999998     111            67889


Q ss_pred             eCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEee
Q 010669          418 AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA  470 (504)
Q Consensus       418 ~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~  470 (504)
                      +.|+ |.||.....+++..+... ....|..++|+|||..|++++.|  |.++.+.
T Consensus       301 SqDrSlSVW~T~~~RPl~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  301 SQDRSLSVWNTALPRPLFVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             cCCccEEEEecCCCCchhhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence            9998 999998777776555432 25789999999999999999999  7777774

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2e-27  Score=235.81  Aligned_cols=232  Identities=22%  Similarity=0.358  Sum_probs=192.3

Q ss_pred             EEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC--------------------------------CC------
Q 010669          258 VTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE--------------------------------DG------  298 (504)
Q Consensus       258 ~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~--------------------------------~~------  298 (504)
                      .+.+. .|.+.|+++.|++||+|||+||.||.|+||.+..                                ..      
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            44555 8999999999999999999999999999998544                                00      


Q ss_pred             -------------------CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669          299 -------------------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG  359 (504)
Q Consensus       299 -------------------~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  359 (504)
                                         ...++..+.+|.+.|.++.|+ .+++|++++.|.+|++|++....++..+      .|...
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F------~Hndf  411 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVF------SHNDF  411 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEE------ecCCe
Confidence                               012344577999999999999 5679999999999999999999999998      57789


Q ss_pred             eEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669          360 YTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       360 v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~  437 (504)
                      |+|++|+| |.++|++|+-||.||||++...+.+.-..-+ .-|++++|.|||++.+.|+-+| +++|+....+....+.
T Consensus       412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH  490 (712)
T ss_pred             eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence            99999999 9999999999999999999877766555534 7899999999999999999999 9999999888766655


Q ss_pred             cCCC------CCCeeEEEECCCCC-EEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          438 SSDS------ETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       438 ~~~~------~~~v~~i~~~~~g~-~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      ...+      ...|+++.|.|... .|++.++|  |+|||.    ..-.++..|.|+...+.-..-.|..+|+
T Consensus       491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~----~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk  559 (712)
T KOG0283|consen  491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG----RDKDLVHKFKGFRNTSSQISASFSSDGK  559 (712)
T ss_pred             EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec----cchhhhhhhcccccCCcceeeeEccCCC
Confidence            4332      33799999998554 35555555  999998    6678888898886666667778888876

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=9.2e-26  Score=190.63  Aligned_cols=248  Identities=19%  Similarity=0.314  Sum_probs=200.2

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce-----EEEcccCccceeEEEEeeC----CCEEEEEe-CCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-----VTTLSGHSKKVTSVKFVTE----GDLFLTGS-ADK  287 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~s~~----~~~l~s~s-~dg  287 (504)
                      -.+.|++.|+|.+|+|+|.+|++|+.|.+|++...+...+     -..+.-|.+.|..++|..+    +.+|++++ .|.
T Consensus        84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            3566899999999999999999999999999976543222     2356679999999999743    34666655 455


Q ss_pred             cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC--CCCCCeEEEEE
Q 010669          288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD--GRPEGYTSAAF  365 (504)
Q Consensus       288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~  365 (504)
                      .|.+-|...+   +..+.+.+|++-|.++- +-++-.|++|+.|.+|++||++-..++..+......  -..+.|..++.
T Consensus       164 ~iy~tdc~~g---~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  164 KIYITDCGRG---QGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             eEEEeecCCC---CcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence            6666666665   67788899999998873 336889999999999999999998888877532111  12367999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC--cceeeeecCCCC
Q 010669          366 HPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KNFRSFESSDSE  442 (504)
Q Consensus       366 ~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~--~~~~~~~~~~~~  442 (504)
                      .|.|++|++|..|....+||++.++++..|..|...|.|+.|+|...||++++.|. |++-|+...  +.+.......|.
T Consensus       240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehk  319 (350)
T KOG0641|consen  240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHK  319 (350)
T ss_pred             CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999998 999998742  122223333446


Q ss_pred             CCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          443 TPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       443 ~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      ..+..+.|+|..--+++.+.|  +.+|-+
T Consensus       320 dk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  320 DKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             CceEEEEecCccceeeeccCcceEEEecc
Confidence            788889999998888888888  999976

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=5.1e-28  Score=214.33  Aligned_cols=238  Identities=19%  Similarity=0.284  Sum_probs=215.4

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY  300 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  300 (504)
                      +..+|.|++|+.|...+++|+.||.|+||.+.+|.+++.|. .|+..|+|+.|+.|+..+++++.|.++++.-+..+   
T Consensus       262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG---  338 (508)
T KOG0275|consen  262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG---  338 (508)
T ss_pred             cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc---
Confidence            56789999999999999999999999999999999999997 89999999999999999999999999999999887   


Q ss_pred             ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCC
Q 010669          301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEA  379 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg  379 (504)
                      +++..+.+|++.|+...|.++|.++++++.||+|++|+..+.+++.++...   +...+|..+-.-| +...++++...+
T Consensus       339 K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~---~~d~~vnsv~~~PKnpeh~iVCNrsn  415 (508)
T KOG0275|consen  339 KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL---GTDYPVNSVILLPKNPEHFIVCNRSN  415 (508)
T ss_pred             hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC---CCcccceeEEEcCCCCceEEEEcCCC
Confidence            788899999999999999999999999999999999999999999988744   4566888888888 667889999999


Q ss_pred             cEEEEEcCCCceeeeeeC---CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          380 LVKIWDVKSQANVAKFDG---HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~---~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      +|.|.++ .|+.+..|..   ..+...+.+.+|.|.++.+.++|+ ++.|...+|+..+++..+  ...+..++-+|..+
T Consensus       416 tv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh--EkdvIGl~HHPHqN  492 (508)
T KOG0275|consen  416 TVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH--EKDVIGLTHHPHQN  492 (508)
T ss_pred             eEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc--cccccccccCcccc
Confidence            9999998 5677777753   345677888999999999999999 999999999999988877  56788999999999


Q ss_pred             EEEEEeCc--EEEEE
Q 010669          456 YLAVASAD--IRVYQ  468 (504)
Q Consensus       456 ~l~~~~~d--i~vw~  468 (504)
                      .+++-++|  +++|.
T Consensus       493 llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  493 LLASYSEDGLLKLWK  507 (508)
T ss_pred             hhhhhcccchhhhcC
Confidence            99999999  88884

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1e-26  Score=236.48  Aligned_cols=270  Identities=20%  Similarity=0.304  Sum_probs=220.7

Q ss_pred             CCCCCeEEEEeccCCCEEEEEe--CCCcEEEEcCCC------------CceEEEcccCccceeEEEEeeCCCEEEEEeCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGG--VDTNAVLFDRPS------------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD  286 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~--~dg~i~vwd~~~------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d  286 (504)
                      .+...|.+++.+|+|..+++||  .||.+.||+...            .+.+.+...|.+.|+|+.|++||.+|++|+.|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            3455699999999999999999  999999998532            23456677899999999999999999999999


Q ss_pred             CcEEEEeCCC------C---------CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 010669          287 KTVRVWQGSE------D---------GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA  351 (504)
Q Consensus       287 g~i~iwd~~~------~---------~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  351 (504)
                      +.|.||+...      .         ..+++...+.+|...|..++|+|++.++++++.|++|.+||..+.+.+..+.  
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~--  168 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR--  168 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee--
Confidence            9999998762      0         1356788899999999999999999999999999999999999998888776  


Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCC------CCCeEEEEEcCCCcEEEEEeCC----c
Q 010669          352 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH------VGAVTAISFSENGYYLATAAHD----G  421 (504)
Q Consensus       352 ~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~g~~l~s~~~d----~  421 (504)
                         +|...|..+.|.|-|++||+-+.|++|+||++.+....+.+..+      ...+..+.|||||.+|++...-    .
T Consensus       169 ---~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~  245 (942)
T KOG0973|consen  169 ---GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS  245 (942)
T ss_pred             ---cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence               78899999999999999999999999999998776666665433      2367899999999999987432    2


Q ss_pred             -EEEEEcCCCcceeeeecCCCCCCeeEEEECCC-------------CC----EEEEEeCc--EEEEEeeccCccceeEEE
Q 010669          422 -VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-------------GS----YLAVASAD--IRVYQVASVKADWNCIKT  481 (504)
Q Consensus       422 -v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~-------------g~----~l~~~~~d--i~vw~~~~~~~~~~~i~~  481 (504)
                       +.|.+-.+.+.-..+-+|  ..++.++.|+|.             ..    .+|+|+.|  +.||..    ..-+++..
T Consensus       246 ~~~IieR~tWk~~~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T----~~~RPl~v  319 (942)
T KOG0973|consen  246 TIAIIERGTWKVDKDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT----ALPRPLFV  319 (942)
T ss_pred             eeEEEecCCceeeeeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec----CCCCchhh
Confidence             888887777766777766  679999999871             11    57788888  999997    33343333


Q ss_pred             ccCCCCCCceeEEEEeecCcc
Q 010669          482 FPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       482 ~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .... -...|.+|+++|+|-.
T Consensus       320 i~~l-f~~SI~DmsWspdG~~  339 (942)
T KOG0973|consen  320 IHNL-FNKSIVDMSWSPDGFS  339 (942)
T ss_pred             hhhh-hcCceeeeeEcCCCCe
Confidence            2221 1348999999999853

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.2e-26  Score=202.48  Aligned_cols=267  Identities=18%  Similarity=0.229  Sum_probs=210.6

Q ss_pred             cccCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCC-CceE-EEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669          218 LHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPS-GQIV-TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~-~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~  294 (504)
                      +.....+.|.+++||| ...++++|+.||+|++|++.. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+
T Consensus        22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence            3445567899999999 556777999999999999986 3332 344579999999999999999999999999999999


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEccCCC--EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHATNK--YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      .++    ....+..|.++|..+.|-+...  .|++||.|++|++||.+....+..+..      +..+.++..-  ..++
T Consensus       102 ~S~----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L------PeRvYa~Dv~--~pm~  169 (347)
T KOG0647|consen  102 ASG----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL------PERVYAADVL--YPMA  169 (347)
T ss_pred             cCC----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec------cceeeehhcc--Ccee
Confidence            985    3455678999999999987665  899999999999999999988888763      2345555443  4578


Q ss_pred             EEEeCCCcEEEEEcCCCceeeee-e-CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC--cceeeeecCCC------
Q 010669          373 GTGTSEALVKIWDVKSQANVAKF-D-GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KNFRSFESSDS------  441 (504)
Q Consensus       373 ~~g~~dg~I~iwd~~~~~~~~~~-~-~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~--~~~~~~~~~~~------  441 (504)
                      +++..+..|.+|+++++...... . .-.-.+.||+...|....+.|+-.| +.+..+..+  +.-.+|+.|..      
T Consensus       170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~  249 (347)
T KOG0647|consen  170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND  249 (347)
T ss_pred             EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence            88899999999999876433211 1 1234688998888877778888887 777777665  33445555542      


Q ss_pred             -CCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          442 -ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       442 -~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                       -..|++|+|+|.-..|+++|.|  ..+||-    .....+++.+.|  ..+|++.+|..+|.+
T Consensus       250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk----dar~kLk~s~~~--~qpItcc~fn~~G~i  307 (347)
T KOG0647|consen  250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK----DARTKLKTSETH--PQPITCCSFNRNGSI  307 (347)
T ss_pred             ceEEecceEeecccceEEEecCCceEEEecc----hhhhhhhccCcC--CCccceeEecCCCCE
Confidence             2357889999998999999888  999996    456667888888  889999999999976

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=5.6e-28  Score=217.25  Aligned_cols=242  Identities=17%  Similarity=0.313  Sum_probs=201.7

Q ss_pred             ccCCCCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          219 HKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ..+|.++|.|++=+|.. ..+++|+.||.|++||+.+..+..+++.|.+.|..+++..  ..+++++.|.+|+.|.+...
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~  139 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP  139 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence            37899999999999977 7899999999999999999999999999999999999975  67899999999999974321


Q ss_pred             --------------------------C---------CcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCC
Q 010669          298 --------------------------G---------NYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSS  341 (504)
Q Consensus       298 --------------------------~---------~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~  341 (504)
                                                +         ...++..+.-..+.|.++.|+|.. ..|++|+.|+.|.+||++.
T Consensus       140 p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~  219 (433)
T KOG0268|consen  140 PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ  219 (433)
T ss_pred             cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc
Confidence                                      0         001222333334567788888855 4677778999999999999


Q ss_pred             CeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC
Q 010669          342 GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHD  420 (504)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d  420 (504)
                      +.++..+..      ...-+.++|+|.+-.|.+|++|..++.||++.. .++..+.+|.++|.++.|||.|.-+++|+.|
T Consensus       220 ~~Pl~KVi~------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD  293 (433)
T KOG0268|consen  220 ASPLKKVIL------TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD  293 (433)
T ss_pred             CCccceeee------eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence            988877752      235678999998889999999999999999875 5788889999999999999999999999999


Q ss_pred             c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          421 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       421 ~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      . |+||..+.+..-..+... .-..|.++.|+.|.+|+++||+|  |++|.-
T Consensus       294 ksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  294 KSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             ceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeeec
Confidence            7 999999887654444332 24579999999999999999999  999986

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=2.9e-26  Score=210.71  Aligned_cols=244  Identities=23%  Similarity=0.343  Sum_probs=206.5

Q ss_pred             eccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       216 ~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ..++.+|...|+.+.|+++...+++++.|..|+||.............|..+|+.+..+|.|.||++++.||+..+.|++
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~  333 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS  333 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence            34678899999999999999999999999999999998888888888999999999999999999999999999999999


Q ss_pred             CCCCcceeEEecc--CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669          296 EDGNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       296 ~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                      ++   ..+.....  ..-.+++.+|||||..|.+|+.||.++|||+.++.....+.     +|.++|..++|+.+|-+|+
T Consensus       334 ~g---~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-----ght~~vk~i~FsENGY~La  405 (506)
T KOG0289|consen  334 SG---SQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-----GHTGPVKAISFSENGYWLA  405 (506)
T ss_pred             CC---cEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-----CCCCceeEEEeccCceEEE
Confidence            86   33333322  22458999999999999999999999999999988766664     7899999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCceeeeeeCC-CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC--CCcceeeeecCCCCCCeeEEE
Q 010669          374 TGTSEALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHDG-VKLWDLR--KLKNFRSFESSDSETPTNSVD  449 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~--~~~~~~~~~~~~~~~~v~~i~  449 (504)
                      +++.|+.|++||+|..+...++... ...+.++.|.+.|.+|+.++.+- |++++-.  ...++..+.  .+.+..+.+.
T Consensus       406 t~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~  483 (506)
T KOG0289|consen  406 TAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA--DHSGLSTGVR  483 (506)
T ss_pred             EEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh--hcccccceee
Confidence            9999999999999998877777543 23799999999999999996664 6666533  333444443  3356788999


Q ss_pred             ECCCCCEEEEEeCc--EEEEEe
Q 010669          450 FDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       450 ~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      |....++++++|.|  +++|.+
T Consensus       484 Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  484 FGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ecccceEEeeccchhheEEeec
Confidence            99999999999999  777654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=7.3e-26  Score=200.02  Aligned_cols=265  Identities=17%  Similarity=0.238  Sum_probs=207.7

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      +....+..|+++.|+|.++.|++++.||.+++|+.........++ |..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus         8 l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen    8 LENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             cCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence            344456789999999999999999999999999998876666665 899999999986 557999999999999999984


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                          ....+..|..+|.||.+.+....+++||.|++|++||.+.......+.      ....|.|+...  |+.|++|+.
T Consensus        86 ----~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d------~~kkVy~~~v~--g~~LvVg~~  153 (323)
T KOG1036|consen   86 ----NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD------QGKKVYCMDVS--GNRLVVGTS  153 (323)
T ss_pred             ----cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc------cCceEEEEecc--CCEEEEeec
Confidence                345567899999999999989999999999999999999744443332      22367776665  678999999


Q ss_pred             CCcEEEEEcCCCceeeeee--CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC----cceeeeecCCC-------CC
Q 010669          378 EALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL----KNFRSFESSDS-------ET  443 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~----~~~~~~~~~~~-------~~  443 (504)
                      +..|.+||+|+........  .-...+.|+++.|++.-+++++-+| |.+=.+...    ..-..|+.|..       ..
T Consensus       154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            9999999999876543222  2345789999999887778888887 554333332    22233443321       24


Q ss_pred             CeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          444 PTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       444 ~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +|++++|+|--+.+++||.|  |.+||.    .+.+.+..|...  ...|.+++|+.+|..
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~----~~rKrl~q~~~~--~~SI~slsfs~dG~~  288 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGIVNIWDL----FNRKRLKQLAKY--ETSISSLSFSMDGSL  288 (323)
T ss_pred             EeceeEeccccceEEecCCCceEEEccC----cchhhhhhccCC--CCceEEEEeccCCCe
Confidence            78999999999999999999  999998    566667777654  678999999999864

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.8e-25  Score=185.80  Aligned_cols=266  Identities=19%  Similarity=0.291  Sum_probs=205.2

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCC------CC---------ceEEEcccCccceeEEEEeeCCCEEEEEeCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRP------SG---------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK  287 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~------~~---------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg  287 (504)
                      ...|.+++|+|.|.+.++|+...+++|.-..      .+         -..+.-+.|.+.|.|.+|+|+|.++++|+.|.
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            3579999999999999999999998887432      11         11223457899999999999999999999999


Q ss_pred             cEEEEeCCCCC--CcceeEEeccCCcCeEEEEEccC----CCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCCCCCCe
Q 010669          288 TVRVWQGSEDG--NYDCKHTLKDHTAEVQAVTVHAT----NKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGY  360 (504)
Q Consensus       288 ~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~~p~----~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  360 (504)
                      +|++..+....  .......+.-|.+.|..++|..+    +..+++++. |..|++-|..+|+....+.     +|.+.|
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-----ghtghi  186 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-----GHTGHI  186 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-----CCcccE
Confidence            99998765431  11233456779999999999643    456776654 6788888999998887775     666667


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC--C-----CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc
Q 010669          361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG--H-----VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN  432 (504)
Q Consensus       361 ~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~--~-----~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~  432 (504)
                      ..+ ++-+|-+|++|+.|.+|++||++-..++.++..  |     .+.|..++..|.|++|++|-.|. ..+||++.++.
T Consensus       187 lal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~  265 (350)
T KOG0641|consen  187 LAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM  265 (350)
T ss_pred             EEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence            655 333578999999999999999999888877643  2     35799999999999999999998 99999999999


Q ss_pred             eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          433 FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       433 ~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      ++.+..+  ...|.++.|+|...|+++++.|  |++-|+.-.-..--.+...-.|  .+.+..+.+.|
T Consensus       266 iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i~~rwh~  329 (350)
T KOG0641|consen  266 IQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAIQCRWHP  329 (350)
T ss_pred             eeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceEEEEecC
Confidence            9988765  7899999999999999999999  8888873211111223344455  55555554443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=1e-25  Score=195.08  Aligned_cols=222  Identities=23%  Similarity=0.355  Sum_probs=197.2

Q ss_pred             EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 010669          260 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL  339 (504)
Q Consensus       260 ~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~  339 (504)
                      .+++|..+++.+.|+.+|.+|++|+.|.+..||-..++   ..+.++.+|++.|+|++..-+.+++++|+.|.++++||+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv   81 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV   81 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence            46789999999999999999999999999999987665   788899999999999999999999999999999999999


Q ss_pred             CCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-----CCcEEEEEcC-------CCceeeeeeCCCCCeEEEEE
Q 010669          340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-----EALVKIWDVK-------SQANVAKFDGHVGAVTAISF  407 (504)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-----dg~I~iwd~~-------~~~~~~~~~~~~~~i~~l~~  407 (504)
                      .+|+.+..+..      ..+|..+.|+++|++++....     .+.|.++|++       ..++...+..+.+.++.+-|
T Consensus        82 ~tGk~la~~k~------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W  155 (327)
T KOG0643|consen   82 ETGKQLATWKT------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW  155 (327)
T ss_pred             CCCcEEEEeec------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence            99999998863      367999999999998888764     3679999998       34567788888899999999


Q ss_pred             cCCCcEEEEEeCCc-EEEEEcCCCccee-eeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEcc
Q 010669          408 SENGYYLATAAHDG-VKLWDLRKLKNFR-SFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP  483 (504)
Q Consensus       408 s~~g~~l~s~~~d~-v~vwd~~~~~~~~-~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~  483 (504)
                      .|-+.+|++|.++| |..||++++..+. +...|  ...|+.+.++++..++++++.|  -++||+    .+..++++|.
T Consensus       156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h--~~~Ind~q~s~d~T~FiT~s~Dttakl~D~----~tl~v~Kty~  229 (327)
T KOG0643|consen  156 GPLGETIIAGHEDGSISIYDARTGKELVDSDEEH--SSKINDLQFSRDRTYFITGSKDTTAKLVDV----RTLEVLKTYT  229 (327)
T ss_pred             cccCCEEEEecCCCcEEEEEcccCceeeechhhh--ccccccccccCCcceEEecccCccceeeec----cceeeEEEee
Confidence            99999999999999 9999999986543 33444  6699999999999999999999  999999    7899999997


Q ss_pred             CCCCCCceeEEEEeec
Q 010669          484 DLSGTGAASFLFLFVL  499 (504)
Q Consensus       484 ~h~~~~~v~~l~~~~~  499 (504)
                      .   ..+|.+.+++|.
T Consensus       230 t---e~PvN~aaisP~  242 (327)
T KOG0643|consen  230 T---ERPVNTAAISPL  242 (327)
T ss_pred             e---cccccceecccc
Confidence            7   678999988884

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=9.4e-26  Score=209.01  Aligned_cols=237  Identities=21%  Similarity=0.309  Sum_probs=199.3

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      ..|...|.+++.++||+||++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....+++++.|++|++|+++..  
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~--  276 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL--  276 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--
Confidence            478889999999999999999999999999999999999999999999999999887788999999999999999875  


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA  379 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg  379 (504)
                       ..+.++.+|.+.|.+|....-++.+-+|+.|+++++|++.....+. +.     ++...+-|++|-.+. .|++|+.+|
T Consensus       277 -s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli-fr-----g~~~sidcv~~In~~-HfvsGSdnG  348 (479)
T KOG0299|consen  277 -SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI-FR-----GGEGSIDCVAFINDE-HFVSGSDNG  348 (479)
T ss_pred             -HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceee-ee-----CCCCCeeeEEEeccc-ceeeccCCc
Confidence             5667788999999999988778888888899999999995443322 22     556789999998754 589999999


Q ss_pred             cEEEEEcCCCceeeeeeC-C-----------CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC----cceeeeecCCCC
Q 010669          380 LVKIWDVKSQANVAKFDG-H-----------VGAVTAISFSENGYYLATAAHDG-VKLWDLRKL----KNFRSFESSDSE  442 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~-~-----------~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~----~~~~~~~~~~~~  442 (504)
                      .|.+|++-..+++.+... |           ...|++++..|...++++|+.+| |++|-+..+    .++..+.   ..
T Consensus       349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~  425 (479)
T KOG0299|consen  349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LV  425 (479)
T ss_pred             eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cc
Confidence            999999999888877642 2           23799999999999999999999 999998766    3334443   36


Q ss_pred             CCeeEEEECCCCCEEEEEeCc----EEEEEe
Q 010669          443 TPTNSVDFDHSGSYLAVASAD----IRVYQV  469 (504)
Q Consensus       443 ~~v~~i~~~~~g~~l~~~~~d----i~vw~~  469 (504)
                      +.|++++|+++|.++++|...    .+-|-.
T Consensus       426 GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  426 GFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             cEEEEEEEccCCCEEEEecccccccceeeEe
Confidence            789999999999977777544    555544

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.3e-26  Score=211.07  Aligned_cols=225  Identities=25%  Similarity=0.405  Sum_probs=197.8

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC------
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE------  296 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~------  296 (504)
                      .++|.|++-+|+|.+|+.|+..|.+++|.+.+|.++..+.+|-..|+|+.|+.||.+|++||.||.|.+|.+..      
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999997532      


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      .....+.+.+..|+-+|+++...+.  ..+++++|.|.++++||+..+..+..+.      .+..+.+++.+|-+..+++
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------fp~si~av~lDpae~~~yi  234 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------FPSSIKAVALDPAERVVYI  234 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe------cCCcceeEEEcccccEEEe
Confidence            2245678889999999999998765  4689999999999999999999888875      3468999999999999999


Q ss_pred             EeCCCcEEEEEcCCC----------------ceeeeeeCCCC--CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceee
Q 010669          375 GTSEALVKIWDVKSQ----------------ANVAKFDGHVG--AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS  435 (504)
Q Consensus       375 g~~dg~I~iwd~~~~----------------~~~~~~~~~~~--~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~  435 (504)
                      |+.+|.|.+.++...                ..+..+.+|.+  +|+|++++-||.+|++|+.|| |.|||+.+.+++++
T Consensus       235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence            999999999887432                23456778888  999999999999999999999 99999999999988


Q ss_pred             eecCCCCCCeeEEEECCCCC
Q 010669          436 FESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       436 ~~~~~~~~~v~~i~~~~~g~  455 (504)
                      +...  .++|+.+.+.|-.+
T Consensus       315 l~~~--kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  315 LQTS--KGPVTNLQINPLER  332 (476)
T ss_pred             Hhhh--ccccceeEeecccc
Confidence            8743  67899998866433

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.3e-26  Score=225.20  Aligned_cols=262  Identities=20%  Similarity=0.321  Sum_probs=207.9

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----ceEEEccc---CccceeEEEEee-CCCEEEEEeCCCcEEEEeC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSG---HSKKVTSVKFVT-EGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~---h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~  294 (504)
                      +....+|..+++-..++.++.. .+.||.+...    ++...+..   -.-.+..|.|.. +.++|++++..|.|.+||+
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence            4457788888988888888754 6777765432    22222221   112356788875 5678999999999999999


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEE
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLIL  372 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l  372 (504)
                      .....-..+..|..|...+++++||+. .++|++||.||+|++||++..+....+.     +....|..+.|+| .+..|
T Consensus       118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-----~nSESiRDV~fsp~~~~~F  192 (839)
T KOG0269|consen  118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-----SNSESIRDVKFSPGYGNKF  192 (839)
T ss_pred             CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-----ccchhhhceeeccCCCceE
Confidence            874333566678899999999999985 5689999999999999999988877776     4557899999999 88999


Q ss_pred             EEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc--eeeeecCCCCCCeeEE
Q 010669          373 GTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN--FRSFESSDSETPTNSV  448 (504)
Q Consensus       373 ~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~--~~~~~~~~~~~~v~~i  448 (504)
                      +++...|.+++||+|.. ++...+..|.++|.|+.|+||+.+||+|+.|+ |+|||+.+.+.  ..++..   ..++.++
T Consensus       193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT---iapv~rV  269 (839)
T KOG0269|consen  193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT---IAPVGRV  269 (839)
T ss_pred             EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee---cceeeee
Confidence            99999999999999976 56778889999999999999999999999998 99999986554  333433   5789999


Q ss_pred             EECCCCCE-EEEEeC--c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          449 DFDHSGSY-LAVASA--D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       449 ~~~~~g~~-l~~~~~--d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      .|-|..++ |++++.  |  |+|||+   .+.+-+..+|..|  ...++.+++-.
T Consensus       270 kWRP~~~~hLAtcsmv~dtsV~VWDv---rRPYIP~~t~~eH--~~~vt~i~W~~  319 (839)
T KOG0269|consen  270 KWRPARSYHLATCSMVVDTSVHVWDV---RRPYIPYATFLEH--TDSVTGIAWDS  319 (839)
T ss_pred             eeccCccchhhhhhccccceEEEEee---ccccccceeeecc--CccccceeccC
Confidence            99998766 444432  3  999999   5778889999998  77777776643

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.5e-27  Score=231.63  Aligned_cols=236  Identities=25%  Similarity=0.425  Sum_probs=214.7

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      ..|...|.++..-..++.+++|+.|-.+-+|.......+..|.+|..+|.++.|+++..+|++|+.+|+|++||++..  
T Consensus        25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--  102 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--  102 (825)
T ss_pred             hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh--
Confidence            356677888887677889999999999999998777777789999999999999999999999999999999999986  


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA  379 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg  379 (504)
                       ..++++.+|...+..+.|||-+.++++|+.|+.+++||++...+...+.     +|...+.++.|+|+|++++.|++|.
T Consensus       103 -k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-----s~~~vv~~l~lsP~Gr~v~~g~ed~  176 (825)
T KOG0267|consen  103 -KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-----SHTRVVDVLRLSPDGRWVASGGEDN  176 (825)
T ss_pred             -hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-----CCcceeEEEeecCCCceeeccCCcc
Confidence             6778999999999999999999999999999999999999888888775     5778899999999999999999999


Q ss_pred             cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669          380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA  458 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~  458 (504)
                      .++|||...|+.+..|.+|.+.+..+.|+|...++++|+.|. |++||+++...+-.....  ...|.+..|+|++..++
T Consensus       177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~  254 (825)
T KOG0267|consen  177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVL  254 (825)
T ss_pred             eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCceeee
Confidence            999999999999999999999999999999999999999998 999999988777666554  57899999999999999


Q ss_pred             EEeCc-EE
Q 010669          459 VASAD-IR  465 (504)
Q Consensus       459 ~~~~d-i~  465 (504)
                      +|... +.
T Consensus       255 ~G~q~sl~  262 (825)
T KOG0267|consen  255 SGEQISLS  262 (825)
T ss_pred             cCchhhhh
Confidence            88776 44

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=6.1e-25  Score=189.65  Aligned_cols=232  Identities=20%  Similarity=0.288  Sum_probs=202.4

Q ss_pred             ccCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          219 HKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ..+|.+.|-.++|+|. .+++++++.|.+|++||...+++...+....+ -.-+.|+|+|.+++.++.|..|.+.|.++.
T Consensus        60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~  138 (313)
T KOG1407|consen   60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTY  138 (313)
T ss_pred             ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEeccc
Confidence            5678888999999885 56999999999999999999999888774444 455789999999999999999999998774


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                         +..... .....+.-++|+-++++|+.....|+|.|...-.-+++..+.     .|+....|+.|+|+|++||+|+.
T Consensus       139 ---~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-----AH~snCicI~f~p~GryfA~GsA  209 (313)
T KOG1407|consen  139 ---KIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-----AHPSNCICIEFDPDGRYFATGSA  209 (313)
T ss_pred             ---ceeehh-cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc-----cCCcceEEEEECCCCceEeeccc
Confidence               333322 345668889999888888877778999999988888877776     78889999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY  456 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~  456 (504)
                      |..+.+||+...-+++.+..+.-+|..++||.||++||++++|- |-|=++.+|..+..++.   .++...++|+|...+
T Consensus       210 DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---~~~t~tVAWHPk~~L  286 (313)
T KOG1407|consen  210 DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---EGPTFTVAWHPKRPL  286 (313)
T ss_pred             cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---cCCceeEEecCCCce
Confidence            99999999999989999998999999999999999999999998 99999999998888865   578999999999999


Q ss_pred             EEEEeCc
Q 010669          457 LAVASAD  463 (504)
Q Consensus       457 l~~~~~d  463 (504)
                      ||.++.|
T Consensus       287 LAyA~dd  293 (313)
T KOG1407|consen  287 LAYACDD  293 (313)
T ss_pred             eeEEecC
Confidence            9998877

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.7e-24  Score=191.09  Aligned_cols=277  Identities=21%  Similarity=0.358  Sum_probs=211.1

Q ss_pred             eccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEee--CCCEEEEEeCCCcE
Q 010669          216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTV  289 (504)
Q Consensus       216 ~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~--~~~~l~s~s~dg~i  289 (504)
                      .++..+|.+-|.++.|++.|+.+|+++.|++|+|||....    .+....+.|.+.|..+.|.+  -|+.+++++.|+++
T Consensus         6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen    6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            4567789999999999999999999999999999996433    45667789999999999964  68899999999999


Q ss_pred             EEEeCCC------CCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeEEEEeec--------CCC
Q 010669          290 RVWQGSE------DGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSD--------AGT  353 (504)
Q Consensus       290 ~iwd~~~------~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~  353 (504)
                      .||.-..      +..+....++....+.|+++.|.|.  |-.+++++.||.++||+.-....+.....        ...
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            9997421      1234556677778889999999984  66899999999999998754333222211        112


Q ss_pred             CCCCCCeEEEEECC---CCCEEEEEeCC-----CcEEEEEcCCC----ceeeeeeCCCCCeEEEEEcCC-C---cEEEEE
Q 010669          354 DGRPEGYTSAAFHP---DGLILGTGTSE-----ALVKIWDVKSQ----ANVAKFDGHVGAVTAISFSEN-G---YYLATA  417 (504)
Q Consensus       354 ~~~~~~v~~~~~~p---dg~~l~~g~~d-----g~I~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~-g---~~l~s~  417 (504)
                      ..+.....|+.|+|   ...+|++|+.+     +.+.||....+    ..+.++.+|..+|+.|+|.|+ |   ..|+++
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence            23556788999998   45688888876     57889877543    346677889999999999996 2   578999


Q ss_pred             eCCcEEEEEcCCCc-----------------ceeeee-cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccce
Q 010669          418 AHDGVKLWDLRKLK-----------------NFRSFE-SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN  477 (504)
Q Consensus       418 ~~d~v~vwd~~~~~-----------------~~~~~~-~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~  477 (504)
                      +.|||+||.++...                 .+..+. ..+|++.|+.+.|+-.|..|++.|.|  +++|..+- ...|+
T Consensus       246 ~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany-~n~~k  324 (361)
T KOG2445|consen  246 TKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY-NNLWK  324 (361)
T ss_pred             ecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh-hhhhe
Confidence            99999999987311                 112222 34458899999999999999999999  99997543 35688


Q ss_pred             eEEEccCCCCCCceeEEEE
Q 010669          478 CIKTFPDLSGTGAASFLFL  496 (504)
Q Consensus       478 ~i~~~~~h~~~~~v~~l~~  496 (504)
                      |...+..   ++.++...|
T Consensus       325 C~sv~~~---e~~~~~~~~  340 (361)
T KOG2445|consen  325 CTSVLKA---EGSVTKPDF  340 (361)
T ss_pred             eeeEEec---cCCCCCccc
Confidence            8887765   344444433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=2e-25  Score=209.28  Aligned_cols=255  Identities=20%  Similarity=0.221  Sum_probs=194.9

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE------------cccCccceeEEEEeeCC-CEEEEEeCCCcE
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT------------LSGHSKKVTSVKFVTEG-DLFLTGSADKTV  289 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~------------~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i  289 (504)
                      ...|.++.|++.|+.|++.+.....+|+|....+.+..            -+||...++|.+|+|+. ..+++++.||++
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl  293 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL  293 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence            44799999999999998888889999999765444332            34899999999999954 479999999999


Q ss_pred             EEEeCCCCCCcceeEEec-----cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC--CeEE
Q 010669          290 RVWQGSEDGNYDCKHTLK-----DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE--GYTS  362 (504)
Q Consensus       290 ~iwd~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~v~~  362 (504)
                      +|||+.....  ....+.     +..-+++.++|+++|+.|++|+.||.|.+||..+......+..  ...|..  .|+|
T Consensus       294 RiWdv~~~k~--q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v--k~AH~~g~~Its  369 (641)
T KOG0772|consen  294 RIWDVNNTKS--QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV--KDAHLPGQDITS  369 (641)
T ss_pred             EEEecCCchh--heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe--eeccCCCCceeE
Confidence            9999986532  222222     3345789999999999999999999999999854332222211  124444  8999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCC--CCCeEEEEEcCCCcEEEEEeCC------c-EEEEEcCCCcc
Q 010669          363 AAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGH--VGAVTAISFSENGYYLATAAHD------G-VKLWDLRKLKN  432 (504)
Q Consensus       363 ~~~~pdg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~--~~~i~~l~~s~~g~~l~s~~~d------~-v~vwd~~~~~~  432 (504)
                      +.|++||++|++-+.|+++++||+++. +++....+-  ..+-+.++|||+.++|++|+.-      + +.+||..+...
T Consensus       370 i~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~  449 (641)
T KOG0772|consen  370 ISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT  449 (641)
T ss_pred             EEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence            999999999999999999999999986 455555442  3466889999999999999642      4 99999999999


Q ss_pred             eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEcc
Q 010669          433 FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP  483 (504)
Q Consensus       433 ~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~  483 (504)
                      ++.+...  ...|..+.|+|.-+.|++|+.|  ++||-=...+..+..+....
T Consensus       450 v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RGak~cv~k  500 (641)
T KOG0772|consen  450 VYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRGAKLCVVK  500 (641)
T ss_pred             EEEecCC--CceEEEEeecchhhheeeecCCCceEEEECccccccchhheeec
Confidence            9988876  6789999999998888888877  66653222233344444433

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=8e-25  Score=193.86  Aligned_cols=273  Identities=21%  Similarity=0.299  Sum_probs=203.1

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce-----EEEcccCccceeEEEEeeCCCE-EEEEeCCCcEEE
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-----VTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRV  291 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~s~~~~~-l~s~s~dg~i~i  291 (504)
                      ..++|...|++++|+.||++|++++.|+.|++|++.+...     ++. .-.-+..+.+.|.||.+- ++++-...++++
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            4678999999999999999999999999999999876321     111 111234688999998775 455556678999


Q ss_pred             EeCCCC--CCcce-------eEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669          292 WQGSED--GNYDC-------KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       292 wd~~~~--~~~~~-------~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  362 (504)
                      |.+...  +.+..       ...-..|.-.|..+-....+.+|++++.|..|.+|+++ |+.+..+..     ....-+.
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-----nq~~n~~  233 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-----NQSSNYD  233 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-----ccccccc
Confidence            976432  11110       01112355566677777778999999999999999999 777777652     2345677


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEc---CCC-----ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC----
Q 010669          363 AAFHPDGLILGTGTSEALVKIWDV---KSQ-----ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK----  429 (504)
Q Consensus       363 ~~~~pdg~~l~~g~~dg~I~iwd~---~~~-----~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~----  429 (504)
                      .+.+|+|+++++++..--|++|.+   +.|     ..+..++||...|..++|+++...+++.+.|| +++||+.-    
T Consensus       234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence            899999999999999999999987   233     34677899999999999999999999999999 99999752    


Q ss_pred             ---Ccceeeee--cCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          430 ---LKNFRSFE--SSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       430 ---~~~~~~~~--~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                         .+.++...  .+...+....+.++|+|+.|+.+... +++|..    ..++..-.+..- +.+.|++++|.++|+.
T Consensus       314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~s----e~g~~~~~~e~~-h~~~Is~is~~~~g~~  387 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFAS----EDGKDYPELEDI-HSTTISSISYSSDGKY  387 (420)
T ss_pred             CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEc----ccCccchhHHHh-hcCceeeEEecCCCcE
Confidence               12222221  22224455689999999999988666 999997    445555555432 3789999999999974

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.2e-24  Score=217.14  Aligned_cols=262  Identities=18%  Similarity=0.232  Sum_probs=213.2

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC-ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ..+|..+.+.++|.|+|++|++++.||.|++|+.... +...++..+...|.+++.  ++.+|++|+.+++|.+|.+..+
T Consensus         9 Ryaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen    9 RYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence            4578889999999999999999999999999987655 444555557778888876  5668999999999999998876


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                      .....   +...+-++.+++|+.+|++++.||.|-.|++.++........+.     +|..+|.++.|+|.+++||+.+-
T Consensus        87 ~~~~i---L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-----gh~apVl~l~~~p~~~fLAvss~  158 (933)
T KOG1274|consen   87 EEDTI---LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-----GHDAPVLQLSYDPKGNFLAVSSC  158 (933)
T ss_pred             Cccce---eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-----ccCCceeeeeEcCCCCEEEEEec
Confidence            32223   33445789999999999999999999999999999887777776     78899999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeeeC--------CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669          378 EALVKIWDVKSQANVAKFDG--------HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV  448 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~--------~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i  448 (504)
                      ||.|+|||+.++....++.+        ....+..++|+|+|..|+..+.|+ |++|+...+.....+....+...+..+
T Consensus       159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~  238 (933)
T KOG1274|consen  159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL  238 (933)
T ss_pred             CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEE
Confidence            99999999999877666543        134577899999966666666665 999999999888888766555669999


Q ss_pred             EECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          449 DFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       449 ~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      .|+|.|.|||+++.+  |.|||+++          ..-|.....|++++|-|++
T Consensus       239 ~wsPnG~YiAAs~~~g~I~vWnv~t----------~~~~~~~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  239 QWSPNGKYIAASTLDGQILVWNVDT----------HERHEFKRAVCCEAWKPNA  282 (933)
T ss_pred             EEcCCCcEEeeeccCCcEEEEeccc----------chhccccceeEEEecCCCC
Confidence            999999999999998  99999842          1113334567777776654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6e-25  Score=194.41  Aligned_cols=251  Identities=18%  Similarity=0.269  Sum_probs=196.0

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEE
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  305 (504)
                      ..|+.|++.|.+||+|..||.|.|||+.+...-+.+.+|..+|.+++||++|+.|+++|.|..|.+||+..+   .+.+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g---s~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG---SPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC---CceeE
Confidence            789999999999999999999999999999888899999999999999999999999999999999999986   45665


Q ss_pred             eccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010669          306 LKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW  384 (504)
Q Consensus       306 ~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iw  384 (504)
                      +. ..++|+...|||... .++++-.+..-.+.++..+.....-. ......+..-.+..|++.|+++++|...|.+.+|
T Consensus       103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~-d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK-DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY  180 (405)
T ss_pred             EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC-CCccccccccccccccCCCCEEEEecCcceEEEE
Confidence            54 568999999999543 44444344445555555432221111 1111112233455799999999999999999999


Q ss_pred             EcCCCceeeeeeCCC-CCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc---------eeeeecCCCCCCeeEEEECCC
Q 010669          385 DVKSQANVAKFDGHV-GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN---------FRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       385 d~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~---------~~~~~~~~~~~~v~~i~~~~~  453 (504)
                      |..+.+++..++-.. ..|..+.|+..|.+|+.-+.|. |+.|+++....         .+.+...-+...-.+++|+.+
T Consensus       181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d  260 (405)
T KOG1273|consen  181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD  260 (405)
T ss_pred             ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence            999999998887655 7899999999999999999998 99999873211         112211112345578999999


Q ss_pred             CCEEEEEeCc---EEEEEeeccCccceeEEEccCC
Q 010669          454 GSYLAVASAD---IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       454 g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                      |.|+++++..   ++||.-    ..+.+++.+.|.
T Consensus       261 geYv~a~s~~aHaLYIWE~----~~GsLVKILhG~  291 (405)
T KOG1273|consen  261 GEYVCAGSARAHALYIWEK----SIGSLVKILHGT  291 (405)
T ss_pred             ccEEEeccccceeEEEEec----CCcceeeeecCC
Confidence            9999999876   999996    678888888776

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.2e-24  Score=191.63  Aligned_cols=240  Identities=21%  Similarity=0.327  Sum_probs=201.5

Q ss_pred             CCCCeEEEEeccCCCEEEEEeC--CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669          222 SKPGIVSLDIHYSKDVIATGGV--DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      ++-+|..++|....+.++.++.  |.+|+..++.+.+.++.+.||...|++++.+|-++.+++++.|++|++||++..  
T Consensus        55 kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~--  132 (311)
T KOG1446|consen   55 KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK--  132 (311)
T ss_pred             ccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC--
Confidence            3447888888877777777766  889999999999999999999999999999998899999999999999999864  


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC--eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                       .+...+..  ..-..++|.|.|-++|++.....|++||++.-  .+...+..  ..+.....+.+.|+|||++++.++.
T Consensus       133 -~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i--~~~~~~ew~~l~FS~dGK~iLlsT~  207 (311)
T KOG1446|consen  133 -KCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSI--TDNDEAEWTDLEFSPDGKSILLSTN  207 (311)
T ss_pred             -CCceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEcc--CCCCccceeeeEEcCCCCEEEEEeC
Confidence             44444432  23345789999999999998889999999864  22333321  1134567899999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCe---EEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAV---TAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i---~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~  453 (504)
                      .+.+++.|.-+|....++.++...-   -..+|+||++++++|+.|| |.+|+++++..+..+... +.+++.++.|.|.
T Consensus       208 ~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~  286 (311)
T KOG1446|consen  208 ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPR  286 (311)
T ss_pred             CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCc
Confidence            9999999999999988887765432   5788999999999999999 999999999999998875 4688999999999


Q ss_pred             CCEEEEEeCcEEEEEe
Q 010669          454 GSYLAVASADIRVYQV  469 (504)
Q Consensus       454 g~~l~~~~~di~vw~~  469 (504)
                      -..+++++..+.+|-.
T Consensus       287 ~~mf~sa~s~l~fw~p  302 (311)
T KOG1446|consen  287 YAMFVSASSNLVFWLP  302 (311)
T ss_pred             eeeeeecCceEEEEec
Confidence            9999999888999975

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=2.2e-25  Score=208.23  Aligned_cols=264  Identities=16%  Similarity=0.278  Sum_probs=217.4

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC---ceEEEccc--CccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSG--HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~--h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      .|..-|.++.+|...+.++||+ .|.|+|||+...   ..+..+..  ....|.++.++|||+.|++|+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            4667788899999999999988 567999998643   23344432  34678999999999999999999999999997


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      ... ......+....-...+++.+||.+..+++..||.|.|||+.+...+..+.     +|...+.|+.+++||..|.+|
T Consensus       496 apT-prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-----GhtDGascIdis~dGtklWTG  569 (705)
T KOG0639|consen  496 APT-PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----GHTDGASCIDISKDGTKLWTG  569 (705)
T ss_pred             CCC-cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-----CCCCCceeEEecCCCceeecC
Confidence            642 22333333334567889999999999999999999999999998888876     888999999999999999999


Q ss_pred             eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669          376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG  454 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g  454 (504)
                      +-|++||.||++.++.+.... ..+.|.++..+|++.||++|-+++ |.|-...+..   .+..+-|...|.++.|.+.|
T Consensus       570 GlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---kyqlhlheScVLSlKFa~cG  645 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKFAYCG  645 (705)
T ss_pred             CCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcc---ceeecccccEEEEEEecccC
Confidence            999999999999998776654 457899999999999999999988 8887766543   34445557899999999999


Q ss_pred             CEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          455 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       455 ~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +++++.|.|  +..|..    .-+..+...+.   .+.|++++++.+.+.
T Consensus       646 kwfvStGkDnlLnawrt----PyGasiFqskE---~SsVlsCDIS~ddky  688 (705)
T KOG0639|consen  646 KWFVSTGKDNLLNAWRT----PYGASIFQSKE---SSSVLSCDISFDDKY  688 (705)
T ss_pred             ceeeecCchhhhhhccC----ccccceeeccc---cCcceeeeeccCceE
Confidence            999999988  999997    56777776665   689999999988753

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=2.1e-26  Score=223.79  Aligned_cols=246  Identities=23%  Similarity=0.414  Sum_probs=217.4

Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEE
Q 010669          236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQA  315 (504)
Q Consensus       236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  315 (504)
                      .+++.+..+-.+++|+..      .+..|...|.++..-..++.+++|+.|..+-+|.+...   ..+..+.+|.++|.+
T Consensus         5 ~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeS   75 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---NAITSLTGHESPIES   75 (825)
T ss_pred             cccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCC---chhheeeccCCccee
Confidence            344555556667788763      34568888888888667889999999999999987654   566678999999999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 010669          316 VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF  395 (504)
Q Consensus       316 l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~  395 (504)
                      +.|+++..+|+.|+.+|+|++||++..+.+..+.     +|...+..+.|+|-+.+++.|+.|+.+.+||.+...+.+.+
T Consensus        76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-----gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~  150 (825)
T KOG0267|consen   76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-----GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY  150 (825)
T ss_pred             eecCcchhhhcccccCCceeeeehhhhhhhhhhh-----ccccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence            9999999999999999999999999998887765     77888999999999999999999999999999998999999


Q ss_pred             eCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeecc
Q 010669          396 DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV  472 (504)
Q Consensus       396 ~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~  472 (504)
                      .+|...|..+.|+|+|.|+++|++|. ++|||+..++....|..+  ...+..+.|+|..-.++.||.|  +++||+   
T Consensus       151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~--e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl---  225 (825)
T KOG0267|consen  151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH--EGKVQSLEFHPLEVLLAPGSSDRTVRFWDL---  225 (825)
T ss_pred             cCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc--cccccccccCchhhhhccCCCCceeeeecc---
Confidence            99999999999999999999999988 999999999999999876  6789999999999999999999  999999   


Q ss_pred             CccceeEEEccCCCCCCceeEEEEeecCccc
Q 010669          473 KADWNCIKTFPDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       473 ~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~  503 (504)
                       +++..+......  ...|.+..|.++|.+.
T Consensus       226 -etfe~I~s~~~~--~~~v~~~~fn~~~~~~  253 (825)
T KOG0267|consen  226 -ETFEVISSGKPE--TDGVRSLAFNPDGKIV  253 (825)
T ss_pred             -ceeEEeeccCCc--cCCceeeeecCCceee
Confidence             778888887765  7899999999999763

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=2.6e-24  Score=194.69  Aligned_cols=245  Identities=18%  Similarity=0.332  Sum_probs=186.8

Q ss_pred             CCCCCeEEEEeccCC--CEEEEEeCCCcEEEEcCCC----------------CceEEEcccCccceeEEEEeeC-CCEEE
Q 010669          221 TSKPGIVSLDIHYSK--DVIATGGVDTNAVLFDRPS----------------GQIVTTLSGHSKKVTSVKFVTE-GDLFL  281 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~--~~l~sg~~dg~i~vwd~~~----------------~~~~~~~~~h~~~v~~l~~s~~-~~~l~  281 (504)
                      .|.+.+..+..++-+  .+.++-+..|.|+||++..                .+.+.++.+|.+.=..++|||- ...|+
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            355566666666644  4667778899999999642                2457788899999999999992 23488


Q ss_pred             EEeCCCcEEEEeCCCCCCcce-eEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669          282 TGSADKTVRVWQGSEDGNYDC-KHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG  359 (504)
Q Consensus       282 s~s~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  359 (504)
                      +|..-+.|++|...+ +.+.. ...+.+|+..|-.++|+|.. ..|++||.||+|+|||++.+.....+..   ..|...
T Consensus       229 sGDc~~~I~lw~~~~-g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~sD  304 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPST-GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHNSD  304 (440)
T ss_pred             cCccccceEeeeecc-CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccCCc
Confidence            888889999999887 33332 34566899999999999964 5899999999999999999854443332   377889


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCC---CceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcc--
Q 010669          360 YTSAAFHPDGLILGTGTSEALVKIWDVKS---QANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN--  432 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~~dg~I~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~--  432 (504)
                      |+.+.|+.+-.+||+|+.||+++|||+|+   ++++..|+-|..+|++|.|+|. ...|++++.|. |.+||+.-..-  
T Consensus       305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e  384 (440)
T KOG0302|consen  305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE  384 (440)
T ss_pred             eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence            99999999888999999999999999986   5688999999999999999995 45666666676 99999863211  


Q ss_pred             --------------eeeeecCCCCCCeeEEEECCCC-CEEEEEeCc-EEEEEe
Q 010669          433 --------------FRSFESSDSETPTNSVDFDHSG-SYLAVASAD-IRVYQV  469 (504)
Q Consensus       433 --------------~~~~~~~~~~~~v~~i~~~~~g-~~l~~~~~d-i~vw~~  469 (504)
                                    .+.+..|.....+..+.|++.- .+|++.+.| +.||..
T Consensus       385 e~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfkt  437 (440)
T KOG0302|consen  385 EIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKT  437 (440)
T ss_pred             hhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEe
Confidence                          1122223335678889999864 466666666 888763

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=5.5e-24  Score=206.46  Aligned_cols=267  Identities=19%  Similarity=0.263  Sum_probs=211.3

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE---EEcccCccceeEEEEeeC-----------CCEEEEEeCCCcE
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV---TTLSGHSKKVTSVKFVTE-----------GDLFLTGSADKTV  289 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~---~~~~~h~~~v~~l~~s~~-----------~~~l~s~s~dg~i  289 (504)
                      +...++.|++....|.+...|..++|||+.+-..+   ..+-.|...|+++.--|.           ...+++++.|++|
T Consensus       325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI  404 (1080)
T KOG1408|consen  325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI  404 (1080)
T ss_pred             CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence            45668889999999999999999999998764432   334458888888876541           1248999999999


Q ss_pred             EEEeCCCCCCccee----------------------------------EEeccCCcCeEEEEEccCCCEEEEEeCCCeEE
Q 010669          290 RVWQGSEDGNYDCK----------------------------------HTLKDHTAEVQAVTVHATNKYFVTASLDNTWC  335 (504)
Q Consensus       290 ~iwd~~~~~~~~~~----------------------------------~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~  335 (504)
                      ++||+....+....                                  ....+....+.+++.+|+|++|++|..-|.++
T Consensus       405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr  484 (1080)
T KOG1408|consen  405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR  484 (1080)
T ss_pred             EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence            99997652110000                                  00112234689999999999999999999999


Q ss_pred             EEECCCCeEEEEeecCCCCCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCC-CceeeeeeCCCCCeEE-------
Q 010669          336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTA-------  404 (504)
Q Consensus       336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---dg~~l~~g~~dg~I~iwd~~~-~~~~~~~~~~~~~i~~-------  404 (504)
                      +||+........+.     .|...|.|+.|+.   ..++||+++.|..|+|||+.. ..++.++.+|...|++       
T Consensus       485 Vy~Lq~l~~~~~~e-----AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g  559 (1080)
T KOG1408|consen  485 VYDLQELEYTCFME-----AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG  559 (1080)
T ss_pred             EEEehhhhhhhhee-----cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC
Confidence            99999877666655     7889999999997   457899999999999999853 3444555555444444       


Q ss_pred             ------------------------------------------EEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC-
Q 010669          405 ------------------------------------------ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-  440 (504)
Q Consensus       405 ------------------------------------------l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~-  440 (504)
                                                                ++..|+..++++++.|. |+|||+.+++..+.|++.. 
T Consensus       560 ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~  639 (1080)
T KOG1408|consen  560 LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD  639 (1080)
T ss_pred             CceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc
Confidence                                                      45566777889999997 9999999999999998743 


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          441 SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       441 ~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      +.+....+..+|+|.||++.+.|  +.+||+    .+++++.+..||  ...||++.|.+|.+
T Consensus       640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df----~sgEcvA~m~GH--sE~VTG~kF~nDCk  696 (1080)
T KOG1408|consen  640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDF----VSGECVAQMTGH--SEAVTGVKFLNDCK  696 (1080)
T ss_pred             CCCceEEEEECCCccEEEEeecCCceEEEEe----ccchhhhhhcCc--chheeeeeecccch
Confidence            45778899999999999999988  999999    789999999999  88999999998864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.1e-24  Score=197.01  Aligned_cols=266  Identities=17%  Similarity=0.269  Sum_probs=214.9

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC--CceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCC
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS--GQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..++|+++.|+|...+|++++.||.+++|.+..  ...+..+.--..+|.+.+|.|+|. .+++++....+..||+.+..
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            357899999999999999999999999998753  344666666678899999999999 89999999999999998743


Q ss_pred             CcceeEEeccCC-cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          299 NYDCKHTLKDHT-AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       299 ~~~~~~~~~~h~-~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                       ...+....++. ..+.....+|++++|+..+..|.|.+.-..+++.+..+..      .+.+..++|+.||+.|++++.
T Consensus       292 -~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki------eG~v~~~~fsSdsk~l~~~~~  364 (514)
T KOG2055|consen  292 -VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI------EGVVSDFTFSSDSKELLASGG  364 (514)
T ss_pred             -cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee------ccEEeeEEEecCCcEEEEEcC
Confidence             23344444544 3567788899999999999999999999999988887763      357999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCC-CeEEEEEcCCCcEEEEEeCCc-EEEEEcCC------CcceeeeecCCCCCCeeEEE
Q 010669          378 EALVKIWDVKSQANVAKFDGHVG-AVTAISFSENGYYLATAAHDG-VKLWDLRK------LKNFRSFESSDSETPTNSVD  449 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~------~~~~~~~~~~~~~~~v~~i~  449 (504)
                      +|.|.+||++...+++.|....+ .-++++.+++|.|||+|++.| |.|||..+      .+++..+...  ...|+++.
T Consensus       365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--tt~Itsl~  442 (514)
T KOG2055|consen  365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--TTAITSLQ  442 (514)
T ss_pred             CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--heeeeeee
Confidence            99999999999999999874322 235677789999999999999 99999653      2344444433  56899999


Q ss_pred             ECCCCCEEEEEeCc----EEEEEeeccCccceeEEEccCCC-CCCceeEEEEeecC
Q 010669          450 FDHSGSYLAVASAD----IRVYQVASVKADWNCIKTFPDLS-GTGAASFLFLFVLG  500 (504)
Q Consensus       450 ~~~~g~~l~~~~~d----i~vw~~~~~~~~~~~i~~~~~h~-~~~~v~~l~~~~~g  500 (504)
                      |++++++|+.++..    +++-.+    .+......|+.-. .-+.|+||+|+|.|
T Consensus       443 Fn~d~qiLAiaS~~~knalrLVHv----PS~TVFsNfP~~n~~vg~vtc~aFSP~s  494 (514)
T KOG2055|consen  443 FNHDAQILAIASRVKKNALRLVHV----PSCTVFSNFPTSNTKVGHVTCMAFSPNS  494 (514)
T ss_pred             eCcchhhhhhhhhccccceEEEec----cceeeeccCCCCCCcccceEEEEecCCC
Confidence            99999999998864    888887    5566666665431 24679999999965

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.5e-23  Score=185.78  Aligned_cols=241  Identities=16%  Similarity=0.237  Sum_probs=197.1

Q ss_pred             EEEEeCCCcEEEEcCCCC------------ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEE
Q 010669          238 IATGGVDTNAVLFDRPSG------------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       238 l~sg~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  305 (504)
                      |++|++...|.-+++.-.            ..+..+..|.++|++++.  ++.++++||.|-+|+|||+...   .....
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~---~qlg~   78 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR---KQLGI   78 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch---hhhcc
Confidence            556666665555544211            224566789999999999  6899999999999999999876   55667


Q ss_pred             eccCCcCeEEEEEccCCC--EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 010669          306 LKDHTAEVQAVTVHATNK--YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI  383 (504)
Q Consensus       306 ~~~h~~~v~~l~~~p~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~i  383 (504)
                      +..|.+.|+++.|.+.-.  .|++|+.||.|.+|+.....++..+.     +|...|+.++.||.|++.++.+.|+.++.
T Consensus        79 ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-----~H~~~Vt~lsiHPS~KLALsVg~D~~lr~  153 (362)
T KOG0294|consen   79 LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-----AHKGQVTDLSIHPSGKLALSVGGDQVLRT  153 (362)
T ss_pred             eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-----ccccccceeEecCCCceEEEEcCCceeee
Confidence            778999999999998654  89999999999999999998888887     77788999999999999999999999999


Q ss_pred             EEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       384 wd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      ||+-.|+.-..++- ...-+.+.|+|.|.+++.+..++|-+|.+.+......+..+   ..+.++.|. ++.+|++|++|
T Consensus       154 WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~d~  228 (362)
T KOG0294|consen  154 WNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGGDN  228 (362)
T ss_pred             ehhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEecCC
Confidence            99988876655542 22334599999999999999999999999988777766553   457777775 56778888887


Q ss_pred             --EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          464 --IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       464 --i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                        |++||-    ....+...|.+|  ++.|-++.++.+
T Consensus       229 ~~i~~~D~----ds~~~~~~~~AH--~~RVK~i~~~~~  260 (362)
T KOG0294|consen  229 EWISLKDT----DSDTPLTEFLAH--ENRVKDIASYTN  260 (362)
T ss_pred             ceEEEecc----CCCccceeeecc--hhheeeeEEEec
Confidence              999997    457888999999  889988886654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=8.2e-23  Score=197.92  Aligned_cols=270  Identities=15%  Similarity=0.240  Sum_probs=219.8

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce-EEEcccC-ccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-VTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h-~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      +..-..++|.+++|+.+.+.||.+-.||.|.+|++..+=. ...+.++ ...|-+++|+ ++..|++.+.+|.|.-||+.
T Consensus        20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence            4455578999999999999999999999999999987633 3344443 4679999999 45578899999999999998


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      +.   +....+....+.|++++.+|.+..++.|++||.+..+++..++......   .....+.+.+++|+|++..++.|
T Consensus        99 ~l---k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~---l~rq~sRvLslsw~~~~~~i~~G  172 (691)
T KOG2048|consen   99 TL---KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS---LMRQKSRVLSLSWNPTGTKIAGG  172 (691)
T ss_pred             cC---ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee---cccccceEEEEEecCCccEEEec
Confidence            86   6677777888999999999999999999999988888888887665554   22345789999999999999999


Q ss_pred             eCCCcEEEEEcCCCceeeeee--------CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCee
Q 010669          376 TSEALVKIWDVKSQANVAKFD--------GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN  446 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~--------~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~  446 (504)
                      +.||.|++||..++..+....        +...-|.++.|-.++ .|++|...| |.+||...+..++.+..+  ...|.
T Consensus       173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h--~adVl  249 (691)
T KOG2048|consen  173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH--DADVL  249 (691)
T ss_pred             ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh--hccee
Confidence            999999999999987766221        122357778777555 678887778 999999999999998887  67899


Q ss_pred             EEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          447 SVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       447 ~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      +++.++++.+++++|.|  +.-|......+.|........|  ...|.+++.+++
T Consensus       250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h--~hdvrs~av~~~  302 (691)
T KOG2048|consen  250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH--AHDVRSMAVIEN  302 (691)
T ss_pred             EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC--cccceeeeeecc
Confidence            99999999999999999  4445554444557777777777  778888888765

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.6e-25  Score=216.15  Aligned_cols=228  Identities=19%  Similarity=0.353  Sum_probs=182.6

Q ss_pred             eEEEEecc-CCCEEEEEeCCCcEEEEcCCC---CceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669          226 IVSLDIHY-SKDVIATGGVDTNAVLFDRPS---GQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNY  300 (504)
Q Consensus       226 I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~  300 (504)
                      +..|.|+. +.++||+++..|.|.+||+..   .+.+..|..|...++++.|++ ...+|++||.||+|++||++..   
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~---  166 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK---  166 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc---
Confidence            44566764 467999999999999999976   566678899999999999998 5678999999999999999986   


Q ss_pred             ceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669          301 DCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA  379 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg  379 (504)
                      ....++.+....|.++.|+| .+++|+++.+.|.+.+||++........    ...|.++|.|+.|||++.+||+|+.|+
T Consensus       167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k----~~AH~GpV~c~nwhPnr~~lATGGRDK  242 (839)
T KOG0269|consen  167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK----LTAHNGPVLCLNWHPNREWLATGGRDK  242 (839)
T ss_pred             cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH----hhcccCceEEEeecCCCceeeecCCCc
Confidence            55666777888999999999 5779999999999999999976433222    338899999999999999999999999


Q ss_pred             cEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCC-cEEEEEeCC--c-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECC
Q 010669          380 LVKIWDVKSQAN--VAKFDGHVGAVTAISFSENG-YYLATAAHD--G-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       380 ~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g-~~l~s~~~d--~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      .|+|||+.+++.  +.++. ...+|.++.|-|.. +.|++++.-  . |+|||++..- +..++..|  ...++.++|..
T Consensus       243 ~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~  319 (839)
T KOG0269|consen  243 MVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDS  319 (839)
T ss_pred             cEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccC
Confidence            999999986543  33333 34689999999964 567776643  3 9999998643 44555554  67889999976


Q ss_pred             -CCCEEEEEeCc
Q 010669          453 -SGSYLAVASAD  463 (504)
Q Consensus       453 -~g~~l~~~~~d  463 (504)
                       |-..+.+++.|
T Consensus       320 ~d~~~l~s~sKD  331 (839)
T KOG0269|consen  320 GDRINLWSCSKD  331 (839)
T ss_pred             CCceeeEeecCc
Confidence             34566677777

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=1.2e-23  Score=203.94  Aligned_cols=259  Identities=17%  Similarity=0.317  Sum_probs=215.7

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE--EEcccCccceeE-EEEee-CCCEEEEEeCCCcEEEEe
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV--TTLSGHSKKVTS-VKFVT-EGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~-l~~s~-~~~~l~s~s~dg~i~iwd  293 (504)
                      ...+|+..|..+++.+ +..++++|.||++++|+-..++.+  ..+.+|.+-|.+ ++|.+ ++-.+++|+.|++|.+|.
T Consensus         9 ~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~   87 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK   87 (745)
T ss_pred             EeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence            4578999998888764 458999999999999997665544  356778888877 88876 455699999999999999


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                      ..+.   .+..++.+|...|.+++...++. +++||.|.++++|-....  ...+     .+|...|..++.-|++ .++
T Consensus        88 ~~~~---~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~~l-----~gH~asVWAv~~l~e~-~~v  155 (745)
T KOG0301|consen   88 LSQA---EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VYSL-----QGHTASVWAVASLPEN-TYV  155 (745)
T ss_pred             cCCC---CchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--hccc-----CCcchheeeeeecCCC-cEE
Confidence            8776   78889999999999999877776 999999999999976543  3333     3899999999999988 899


Q ss_pred             EEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      +|+.|.+|++|.-  ++.+.+|.+|...|..+++-+++ .+++++.|| |++|++ ++..+..+.+|  ...+.++....
T Consensus       156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~  229 (745)
T KOG0301|consen  156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMAL  229 (745)
T ss_pred             eccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEecC
Confidence            9999999999974  78899999999999999999765 467788888 999999 67788777766  78899999889


Q ss_pred             CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCccc
Q 010669          453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~  503 (504)
                      ++..++++|+|  ++||+.      ..+.+.+.--  .-.|.++.+.++|-+.
T Consensus       230 ~~~~Ivs~gEDrtlriW~~------~e~~q~I~lP--ttsiWsa~~L~NgDIv  274 (745)
T KOG0301|consen  230 SDGLIVSTGEDRTLRIWKK------DECVQVITLP--TTSIWSAKVLLNGDIV  274 (745)
T ss_pred             CCCeEEEecCCceEEEeec------CceEEEEecC--ccceEEEEEeeCCCEE
Confidence            99999999999  999996      2666666432  4478999999888664

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=1e-23  Score=204.47  Aligned_cols=233  Identities=24%  Similarity=0.379  Sum_probs=200.2

Q ss_pred             ccCCCCCeEE-EEecc-CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          219 HKTSKPGIVS-LDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       219 ~~~~~~~I~~-~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ..+|.+-|.+ +++.+ ++-.+++|+.|+.+.+|.+.+..++.++++|...|.|+....++. +++||.|.++++|... 
T Consensus        53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~-  130 (745)
T KOG0301|consen   53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG-  130 (745)
T ss_pred             cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch-
Confidence            3445566666 77775 555799999999999999999999999999999999998776776 9999999999999764 


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                          ++...+.+|...|+++..-|.+ .+++||.|++|++|.-  ++....+.     +|...|+.+++-+++. |++++
T Consensus       131 ----~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-----gHtD~VRgL~vl~~~~-flScs  197 (745)
T KOG0301|consen  131 ----ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-----GHTDCVRGLAVLDDSH-FLSCS  197 (745)
T ss_pred             ----hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-----cchhheeeeEEecCCC-eEeec
Confidence                5666789999999999999987 8999999999999975  55666665     7899999999998765 77888


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      .||.|++|++ ++..+.++.+|...|.+++...++..++++++|+ +++|+..  .+.+.+..+  ...++++.+-++|.
T Consensus       198 NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD  272 (745)
T KOG0301|consen  198 NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD  272 (745)
T ss_pred             CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCC
Confidence            9999999999 8899999999999999999888889999999998 9999976  677777765  46899999999998


Q ss_pred             EEEEEeCc-EEEEEeec
Q 010669          456 YLAVASAD-IRVYQVAS  471 (504)
Q Consensus       456 ~l~~~~~d-i~vw~~~~  471 (504)
                      .++.||+. |+||....
T Consensus       273 Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  273 IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEEeccCceEEEEEecc
Confidence            87766666 99998753

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=3e-23  Score=182.05  Aligned_cols=269  Identities=16%  Similarity=0.310  Sum_probs=196.2

Q ss_pred             cccCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCCCc----------eEE-----EcccCccceeEEEEee-CCCEE
Q 010669          218 LHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQ----------IVT-----TLSGHSKKVTSVKFVT-EGDLF  280 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~----------~~~-----~~~~h~~~v~~l~~s~-~~~~l  280 (504)
                      +.+.|.+.|+++.+.+ .|+++++|+.||.|.|||+++..          .+.     .-.+|.-.|..+.|-| |...+
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            4567889999999988 68899999999999999987542          111     1136788899999999 66688


Q ss_pred             EEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC---CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCC
Q 010669          281 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT---NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP  357 (504)
Q Consensus       281 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  357 (504)
                      .+++.|.+++|||..+.   +....|+ ..+.|.+-+++|-   .-++++|..|-.|++-|+.+|.....+.     +|.
T Consensus       118 tssSFDhtlKVWDtnTl---Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-----GHr  188 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTL---QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-----GHR  188 (397)
T ss_pred             ecccccceEEEeecccc---eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-----ccc
Confidence            99999999999999875   4444443 4567888888883   3478888889999999999999888876     889


Q ss_pred             CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCC-ceeeee--------------eCCCCCeEEEEEcCCCcEEEEEeCCc
Q 010669          358 EGYTSAAFHPDGL-ILGTGTSEALVKIWDVKSQ-ANVAKF--------------DGHVGAVTAISFSENGYYLATAAHDG  421 (504)
Q Consensus       358 ~~v~~~~~~pdg~-~l~~g~~dg~I~iwd~~~~-~~~~~~--------------~~~~~~i~~l~~s~~g~~l~s~~~d~  421 (504)
                      ..|.++.|+|... .|++|+.||.|++||+|.. .+...+              ..|.+.|+.++|+.+|.++++++.|.
T Consensus       189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~  268 (397)
T KOG4283|consen  189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD  268 (397)
T ss_pred             CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence            9999999999554 6789999999999999764 333333              24677899999999999999999887


Q ss_pred             -EEEEEcCCCcceeeeecCCCCCCeeEEEE---CCC-CCEEEEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeEEE
Q 010669          422 -VKLWDLRKLKNFRSFESSDSETPTNSVDF---DHS-GSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASFLF  495 (504)
Q Consensus       422 -v~vwd~~~~~~~~~~~~~~~~~~v~~i~~---~~~-g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~  495 (504)
                       +++|+..+|.....-.+......-.++++   +-+ +-++..-..+ +.++++    ..+..+..+..|  -..|.+..
T Consensus       269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~----~sgs~ir~l~~h--~k~i~c~~  342 (397)
T KOG4283|consen  269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNL----LEGSFVRRLSTH--LKRINCAA  342 (397)
T ss_pred             ceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEc----cCceEEEeeecc--cceeeEEe
Confidence             99999998765332211111111111111   112 2222222223 777777    667788888887  55666666


Q ss_pred             EeecCc
Q 010669          496 LFVLGQ  501 (504)
Q Consensus       496 ~~~~g~  501 (504)
                      +-++=|
T Consensus       343 ~~~~fq  348 (397)
T KOG4283|consen  343 YRPDFE  348 (397)
T ss_pred             ecCchh
Confidence            555433

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=5.7e-24  Score=206.34  Aligned_cols=245  Identities=19%  Similarity=0.297  Sum_probs=209.8

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee---CCCEEEEEeCCCcEEEEeCCCCC
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT---EGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      .+-+|.+++++|+|.+||+|..-|.++||++.+-+....+..|...|.|+.|+.   ..++|++++.|..|.|||+..  
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r--  535 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR--  535 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--
Confidence            456899999999999999999999999999999888889999999999999984   346899999999999999874  


Q ss_pred             CcceeEEeccCCcCeEEEEEccCC--CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATN--KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                      ++..+.++.+|...|+++.|...|  ..+++++.|+.|.+--.+.......+...........+..++..|..+++++++
T Consensus       536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c  615 (1080)
T KOG1408|consen  536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC  615 (1080)
T ss_pred             ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence            467888999999999999998776  689999999987654333211111221111112345689999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeeeC---CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          377 SEALVKIWDVKSQANVAKFDG---HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~---~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      .|..|+|||+.+++....|++   |.+....+...|.|.||++.+.|. +.++|+.+++++....+|  ...|+.+.|.+
T Consensus       616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH--sE~VTG~kF~n  693 (1080)
T KOG1408|consen  616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH--SEAVTGVKFLN  693 (1080)
T ss_pred             cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc--chheeeeeecc
Confidence            999999999999999999975   667888999999999999999997 999999999999988877  67899999999


Q ss_pred             CCCEEEEEeCc--EEEEEee
Q 010669          453 SGSYLAVASAD--IRVYQVA  470 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~~~  470 (504)
                      |.+.|++.+.|  |.||.+.
T Consensus       694 DCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  694 DCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             cchhheeecCCceEEEEECc
Confidence            99999999988  9999984

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=2.3e-24  Score=201.47  Aligned_cols=234  Identities=18%  Similarity=0.280  Sum_probs=202.3

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce--EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY  300 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  300 (504)
                      ..-|.++.+.|||+.|++|+.-.++.|||+.....  ...+....-...+++.+||.+..+++..||.|.|||+.+.   
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq---  541 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ---  541 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc---
Confidence            34688999999999999999999999999876543  2334433455778899999999999999999999999875   


Q ss_pred             ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010669          301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL  380 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~  380 (504)
                      ..++.|++|.+.+.||.++++|..|-+|+-|.+|+.||++.++.+....      ..+.|.++.++|.+.++++|-.++.
T Consensus       542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd------F~SQIfSLg~cP~~dWlavGMens~  615 (705)
T KOG0639|consen  542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD------FSSQIFSLGYCPTGDWLAVGMENSN  615 (705)
T ss_pred             eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh------hhhhheecccCCCccceeeecccCc
Confidence            7889999999999999999999999999999999999999998776553      3468999999999999999999999


Q ss_pred             EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEE
Q 010669          381 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV  459 (504)
Q Consensus       381 I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~  459 (504)
                      +.|..... ...+.+.-|.+-|.++.|.+.|+|+++.+.|+ +..|...-|..+...+.   ...|.++.++.|.+|+++
T Consensus       616 vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVT  691 (705)
T KOG0639|consen  616 VEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVT  691 (705)
T ss_pred             EEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEe
Confidence            99887644 34455666899999999999999999999999 99999988877665544   578999999999999999


Q ss_pred             EeCc--EEEEEe
Q 010669          460 ASAD--IRVYQV  469 (504)
Q Consensus       460 ~~~d--i~vw~~  469 (504)
                      |+.|  -.||.+
T Consensus       692 GSGdkkATVYeV  703 (705)
T KOG0639|consen  692 GSGDKKATVYEV  703 (705)
T ss_pred             cCCCcceEEEEE
Confidence            9998  888876

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=7.9e-23  Score=180.89  Aligned_cols=231  Identities=23%  Similarity=0.313  Sum_probs=188.3

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      .-.|..++.+++|.+ ...+++|+.||.|+.+|+.++... .+..|..+|.|+.+++....+++||+|++|++||.+.. 
T Consensus        50 ~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-  126 (323)
T KOG1036|consen   50 KFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-  126 (323)
T ss_pred             heecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-
Confidence            345788999999986 567889999999999999987654 44569999999999998888999999999999999863 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                        .....+. ....|.++..  .++.|++|+.|..+.+||+++.....+....   .-...+.|+++-|++.-+++++-|
T Consensus       127 --~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS---~lkyqtR~v~~~pn~eGy~~sSie  198 (323)
T KOG1036|consen  127 --VVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRES---SLKYQTRCVALVPNGEGYVVSSIE  198 (323)
T ss_pred             --ccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccc---cceeEEEEEEEecCCCceEEEeec
Confidence              3333333 3347888876  4889999999999999999987765544322   345679999999988889999999


Q ss_pred             CcEEEEEcCCC----ceeeeeeCCC---------CCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC
Q 010669          379 ALVKIWDVKSQ----ANVAKFDGHV---------GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP  444 (504)
Q Consensus       379 g~I~iwd~~~~----~~~~~~~~~~---------~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~  444 (504)
                      |.|.+=.+...    +....|+.|.         .+|++|+|+|--..|++|+.|| |.+||+.+.+.+..+...  ...
T Consensus       199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~S  276 (323)
T KOG1036|consen  199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETS  276 (323)
T ss_pred             ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCc
Confidence            99988666554    3455666664         2799999999988999999999 999999988877777554  567


Q ss_pred             eeEEEECCCCCEEEEEeC
Q 010669          445 TNSVDFDHSGSYLAVASA  462 (504)
Q Consensus       445 v~~i~~~~~g~~l~~~~~  462 (504)
                      |.+++|+.+|..||+++.
T Consensus       277 I~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  277 ISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEEEEeccCCCeEEEEec
Confidence            999999999999999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1.1e-21  Score=188.49  Aligned_cols=253  Identities=15%  Similarity=0.142  Sum_probs=190.4

Q ss_pred             CeEEEEeccCCCEE-EEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEE-eCCCcEEEEeCCCCCCcce
Q 010669          225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       225 ~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~  302 (504)
                      .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.|+.|++||+.+.   ..
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~---~~  107 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETR---KV  107 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCC---eE
Confidence            35679999999976 5677889999999999888877765544 5778999999876554 56899999999874   44


Q ss_pred             eEEeccCCcCeEEEEEccCCCEEEEEeCCC-eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE-eCCCc
Q 010669          303 KHTLKDHTAEVQAVTVHATNKYFVTASLDN-TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEAL  380 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g-~~dg~  380 (504)
                      +..+.. ...+.+++|+|+++++++++.++ .+.+||..++........      .....+++|+|+|.+|+++ ..+|.
T Consensus       108 ~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~  180 (300)
T TIGR03866       108 LAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV------DQRPRFAEFTADGKELWVSSEIGGT  180 (300)
T ss_pred             EeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc------CCCccEEEECCCCCEEEEEcCCCCE
Confidence            444432 34468899999999999988775 567789988876654431      1245779999999988655 46899


Q ss_pred             EEEEEcCCCceeeeeeCCC-------CCeEEEEEcCCCcEEEEE-eCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669          381 VKIWDVKSQANVAKFDGHV-------GAVTAISFSENGYYLATA-AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       381 I~iwd~~~~~~~~~~~~~~-------~~i~~l~~s~~g~~l~s~-~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      |++||+++++.+..+..+.       .....++|+|+|.+++++ +.++ |.+||+++++....+..   ...+.+++|+
T Consensus       181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~  257 (300)
T TIGR03866       181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFT  257 (300)
T ss_pred             EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEEC
Confidence            9999999988776654221       123568899999986554 3344 99999998877655432   3468899999


Q ss_pred             CCCCEEEEEeC-c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          452 HSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       452 ~~g~~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      |+|++|++++. +  |.+||+    ..++++..+...   ....+++|.|
T Consensus       258 ~~g~~l~~~~~~~~~i~v~d~----~~~~~~~~~~~~---~~~~~~~~~~  300 (300)
T TIGR03866       258 PDEKYLLTTNGVSNDVSVIDV----AALKVIKSIKVG---RLPWGVVVRP  300 (300)
T ss_pred             CCCCEEEEEcCCCCeEEEEEC----CCCcEEEEEEcc---cccceeEeCC
Confidence            99999988643 3  999998    778888888653   4457777754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=1e-23  Score=195.57  Aligned_cols=234  Identities=20%  Similarity=0.340  Sum_probs=184.6

Q ss_pred             cCccceeEEEEeeCC-CEEEEEeCCCcEEEEeCCCCC-------CcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCe
Q 010669          263 GHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDG-------NYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNT  333 (504)
Q Consensus       263 ~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~  333 (504)
                      .|.+.|+.+.+.|+. ..+++++..+.|.|||...-.       ...+-..+.+|...-.+++|++.. -++++++.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            488999999999954 467778889999999976532       123334788999888999999854 48999999999


Q ss_pred             EEEEECCCCeEE-E-EeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcC--CCceeeeeeCCCCCeEEEEEc
Q 010669          334 WCFYDLSSGICL-T-QVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVK--SQANVAKFDGHVGAVTAISFS  408 (504)
Q Consensus       334 i~iwd~~~~~~~-~-~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~--~~~~~~~~~~~~~~i~~l~~s  408 (504)
                      |.+||+...... . ........+|...|..++|++ +..+|++++.|+.+.|||+|  +.++.....+|.+.|+|++|+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            999999764331 0 000011347889999999999 77889999999999999999  556677788999999999999


Q ss_pred             C-CCcEEEEEeCCc-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECCCC-CEEEEEeCc--EEEEEeeccCcc-------
Q 010669          409 E-NGYYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKAD-------  475 (504)
Q Consensus       409 ~-~g~~l~s~~~d~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~~g-~~l~~~~~d--i~vw~~~~~~~~-------  475 (504)
                      | ++..||+|+.|+ |.+||+|+.. ++.++..|  ...|..+.|+|.. ..|++++.|  +.|||+......       
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H--~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~  359 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGH--EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE  359 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCceeccCC--CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence            9 678899999898 9999999875 45556555  7899999999965 678888888  999999553322       


Q ss_pred             ---ceeEEEccCCCCCCceeEEEEeecC
Q 010669          476 ---WNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       476 ---~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                         -+++....||  .+.|..+++.|+-
T Consensus       360 dgppEllF~HgGH--~~kV~DfsWnp~e  385 (422)
T KOG0264|consen  360 DGPPELLFIHGGH--TAKVSDFSWNPNE  385 (422)
T ss_pred             cCCcceeEEecCc--ccccccccCCCCC
Confidence               2345677788  8899999888764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=9.4e-24  Score=203.29  Aligned_cols=243  Identities=14%  Similarity=0.253  Sum_probs=201.8

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC--ceEEEcccCccceeEEEE-eeCCCEEEEEeCCCcEEEEeCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKF-VTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~-s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ..|.+-|..+....+|+.|++++.|-+|++|+...+  -++.++..|.+.|.|+++ -++..++++||-|+.|.+||+..
T Consensus        70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~  149 (735)
T KOG0308|consen   70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINT  149 (735)
T ss_pred             hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccC
Confidence            457788999999999999999999999999998776  567788899999999999 67888999999999999999986


Q ss_pred             CCC-------cceeEEec-cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669          297 DGN-------YDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       297 ~~~-------~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd  368 (504)
                      +..       ......+. ++...|++++.++.|..|++|+..+.+++||.++++.+..+.     +|...|.++-.++|
T Consensus       150 ~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-----GHTdNVr~ll~~dD  224 (735)
T KOG0308|consen  150 GTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-----GHTDNVRVLLVNDD  224 (735)
T ss_pred             cchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-----ccccceEEEEEcCC
Confidence            521       11122233 788999999999999999999999999999999999888876     88899999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeE
Q 010669          369 GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS  447 (504)
Q Consensus       369 g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~  447 (504)
                      |..++++++||+|++||+...+++.++..|...|.++..+|+=.++++|+.|+ |..=|+++......+...  ..+|..
T Consensus       225 Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~  302 (735)
T KOG0308|consen  225 GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLK  302 (735)
T ss_pred             CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhh
Confidence            99999999999999999999999999999999999999999999999999999 999999985432222222  456666


Q ss_pred             EEECCCCCEEEEEeCc--EEEEEe
Q 010669          448 VDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       448 i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      +..+...+-+-+++.|  |+-|..
T Consensus       303 l~~~~~~~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  303 LHLHEHDNSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             hhhccccCCceeeeccccceecCC
Confidence            6666433322333333  777754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.2e-23  Score=180.00  Aligned_cols=234  Identities=18%  Similarity=0.235  Sum_probs=187.6

Q ss_pred             ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc--CCCEEEEEeCCCeEEEEEC
Q 010669          262 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDL  339 (504)
Q Consensus       262 ~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~  339 (504)
                      ..|.+.|.++...-.|+.|++++.|++|+|+.++..+....+.++.+|.++|+.++|..  -|.+|++++.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            46888898888877899999999999999999988766678889999999999999954  6899999999999999999


Q ss_pred             CCCeEEEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCC---ceeeeeeCCCCCeEEEEEcCC---C
Q 010669          340 SSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGAVTAISFSEN---G  411 (504)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg~I~iwd~~~~---~~~~~~~~~~~~i~~l~~s~~---g  411 (504)
                      .+++-.+...   ...|...|++++|-|  -|..|++++.||.|.|.+.+..   ........|.-.|++++|.|-   |
T Consensus        88 ~~g~w~k~~e---~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen   88 ENGRWTKAYE---HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             CCCchhhhhh---hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence            8885444333   347889999999999  5789999999999999998764   223344679999999999995   5


Q ss_pred             -----------cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC----CEEEEEeCc--EEEEEeeccC
Q 010669          412 -----------YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG----SYLAVASAD--IRVYQVASVK  473 (504)
Q Consensus       412 -----------~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g----~~l~~~~~d--i~vw~~~~~~  473 (504)
                                 +.|++|+.|. |+||+...+.-...-....|...|+.++|.|.-    .+|++++.|  +.||......
T Consensus       165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~  244 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY  244 (299)
T ss_pred             cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence                       5799999998 999999876422222233447899999999964    689999999  8899875443


Q ss_pred             ccce--eEEEccCCCCCCceeEEEEeecCccc
Q 010669          474 ADWN--CIKTFPDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       474 ~~~~--~i~~~~~h~~~~~v~~l~~~~~g~~~  503 (504)
                      ..|+  ++..|     ...+..+.++..|.++
T Consensus       245 e~wk~tll~~f-----~~~~w~vSWS~sGn~L  271 (299)
T KOG1332|consen  245 EPWKKTLLEEF-----PDVVWRVSWSLSGNIL  271 (299)
T ss_pred             CcccccccccC-----CcceEEEEEeccccEE
Confidence            4443  33443     5578999999888765

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=1.1e-21  Score=183.95  Aligned_cols=267  Identities=18%  Similarity=0.244  Sum_probs=202.2

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE---cccC-ccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT---LSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h-~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      +.....|..+.|+|.+..++.....|.+.+|++..+...++   +..+ ..-|.|++|.++|+ +++|..+|.|.||+..
T Consensus       197 k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~  275 (626)
T KOG2106|consen  197 KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG  275 (626)
T ss_pred             eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC
Confidence            34456788999999776555555578999999988866543   3333 36799999999887 7899999999999986


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE-----------EEEeecCC------------
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-----------LTQVSDAG------------  352 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~~~~------------  352 (504)
                      +.   +..+....|.+.|.+++...+|.++- |+.|..|..||-.-.+.           ++.+....            
T Consensus       276 ~~---~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i  351 (626)
T KOG2106|consen  276 TN---RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI  351 (626)
T ss_pred             Cc---eEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence            54   44445559999999999998887555 99999999998321100           01110000            


Q ss_pred             ------------CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC
Q 010669          353 ------------TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD  420 (504)
Q Consensus       353 ------------~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d  420 (504)
                                  ..+|......++.+|+...+++++.|+.+++|+  ..+++.+.. -..+..|+.|+|.| .++.|+..
T Consensus       352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~  427 (626)
T KOG2106|consen  352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTAT  427 (626)
T ss_pred             EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeecc
Confidence                        024556778999999999999999999999999  444444333 34688999999999 89999988


Q ss_pred             c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669          421 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       421 ~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~  497 (504)
                      | ..+.|..+... .++...  +.+++.+.|+|+|.+||+|+.|  |.||.++   .++.....+..|.+ ++|+.++|+
T Consensus       428 G~w~V~d~e~~~l-v~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs---~~g~~y~r~~k~~g-s~ithLDwS  500 (626)
T KOG2106|consen  428 GRWFVLDTETQDL-VTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS---ANGRKYSRVGKCSG-SPITHLDWS  500 (626)
T ss_pred             ceEEEEeccccee-EEEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEEC---CCCcEEEEeeeecC-ceeEEeeec
Confidence            8 88999988443 333333  6789999999999999999999  9999984   44555555555544 899999999


Q ss_pred             ecCcc
Q 010669          498 VLGQT  502 (504)
Q Consensus       498 ~~g~~  502 (504)
                      +|+|.
T Consensus       501 ~Ds~~  505 (626)
T KOG2106|consen  501 SDSQF  505 (626)
T ss_pred             CCCce
Confidence            99985

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4.5e-23  Score=190.58  Aligned_cols=234  Identities=21%  Similarity=0.296  Sum_probs=180.0

Q ss_pred             EEEEecc-------CCCEEEEEeCCCcEEEEcCCCCce---E------------------EEcccCccceeEEEEeeC-C
Q 010669          227 VSLDIHY-------SKDVIATGGVDTNAVLFDRPSGQI---V------------------TTLSGHSKKVTSVKFVTE-G  277 (504)
Q Consensus       227 ~~~~~s~-------~~~~l~sg~~dg~i~vwd~~~~~~---~------------------~~~~~h~~~v~~l~~s~~-~  277 (504)
                      .|+.|..       .|+++|.|+.|..|.|||+.-...   .                  ..-.+|+..|..++|+.. .
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            5666643       367999999999999999742110   0                  012369999999999874 4


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCC
Q 010669          278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDG  355 (504)
Q Consensus       278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~  355 (504)
                      +.|++||.|.+|++||+.++   ++..++..|.+.|.++.|||. ..++++|+.|++|.+.|++... .-..+.      
T Consensus       257 nVLaSgsaD~TV~lWD~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk------  327 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK------  327 (463)
T ss_pred             eeEEecCCCceEEEEEcCCC---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE------
Confidence            57999999999999999997   788888889999999999995 5689999999999999999422 122221      


Q ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCc
Q 010669          356 RPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLK  431 (504)
Q Consensus       356 ~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~  431 (504)
                      ..+.|-.++|+| ....+++++.||+|+-+|+|+. +++.+++.|.++|++|+++.. -.+|++++.++ |++|++....
T Consensus       328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            125789999999 5578889999999999999986 899999999999999999885 46788888888 9999987544


Q ss_pred             ceeeeecCCCCCCeeEEEECCCCCE-EEEEeCc--EEEEEe
Q 010669          432 NFRSFESSDSETPTNSVDFDHSGSY-LAVASAD--IRVYQV  469 (504)
Q Consensus       432 ~~~~~~~~~~~~~v~~i~~~~~g~~-l~~~~~d--i~vw~~  469 (504)
                      .-......-.-+...|++++|+-.+ ++.||..  ++|||+
T Consensus       408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             CcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence            3211111111234778888888755 4555555  999998

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=2.8e-21  Score=185.54  Aligned_cols=249  Identities=15%  Similarity=0.166  Sum_probs=187.2

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCCcceeEEeccCCcCe
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV  313 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  313 (504)
                      ++++++++.|+.+++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..++   .....+..+.. +
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~-~   75 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATG---EVIGTLPSGPD-P   75 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCC---cEEEeccCCCC-c
Confidence            35788999999999999999998888876544 6789999999876 56778899999998875   44444544433 5


Q ss_pred             EEEEEccCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC-cEEEEEcCCCce
Q 010669          314 QAVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-LVKIWDVKSQAN  391 (504)
Q Consensus       314 ~~l~~~p~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg-~I~iwd~~~~~~  391 (504)
                      ..+.|+|+++.++++ +.|+.+++||+++++.+..+..      ...+.+++|+|+|.+++++..++ .+.+||.++++.
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~  149 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI  149 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence            678999999977654 5689999999998877666531      12467899999999999988765 567789988876


Q ss_pred             eeeeeCCCCCeEEEEEcCCCcEEEEEe-CCc-EEEEEcCCCcceeeeecCCC-----CCCeeEEEECCCCCEEEEEe--C
Q 010669          392 VAKFDGHVGAVTAISFSENGYYLATAA-HDG-VKLWDLRKLKNFRSFESSDS-----ETPTNSVDFDHSGSYLAVAS--A  462 (504)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~g~~l~s~~-~d~-v~vwd~~~~~~~~~~~~~~~-----~~~v~~i~~~~~g~~l~~~~--~  462 (504)
                      +..+.. ...+.+++|+++|.+|++++ .++ |++||+.+++.+..+.....     ......++|+|++++++++.  .
T Consensus       150 ~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~  228 (300)
T TIGR03866       150 VDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA  228 (300)
T ss_pred             EEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence            655442 23567899999999886554 466 99999999887766643210     11345788999999866543  3


Q ss_pred             c-EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          463 D-IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       463 d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      + +.+||.    .+++.+..+..   ...+.++.|+|+|+.
T Consensus       229 ~~i~v~d~----~~~~~~~~~~~---~~~~~~~~~~~~g~~  262 (300)
T TIGR03866       229 NRVAVVDA----KTYEVLDYLLV---GQRVWQLAFTPDEKY  262 (300)
T ss_pred             CeEEEEEC----CCCcEEEEEEe---CCCcceEEECCCCCE
Confidence            3 999998    56676665532   347889999999874

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=7.2e-23  Score=181.34  Aligned_cols=245  Identities=21%  Similarity=0.351  Sum_probs=200.3

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcC------CC------------------------------C----ce
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDR------PS------------------------------G----QI  257 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~------~~------------------------------~----~~  257 (504)
                      -+.+|.+.|+++.|++.+.++++++.|++..||..      ..                              +    .+
T Consensus       185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP  264 (481)
T KOG0300|consen  185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP  264 (481)
T ss_pred             eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence            46789999999999999999999999999999961      11                              0    12


Q ss_pred             EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEE
Q 010669          258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY  337 (504)
Q Consensus       258 ~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iw  337 (504)
                      +..+.+|.+.|.+..|...|+.+++++.|.+..+||++++   ..+..+.+|....+.++-||..+++++++.|.+.++|
T Consensus       265 l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg---e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLW  341 (481)
T KOG0300|consen  265 LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG---EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLW  341 (481)
T ss_pred             eeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC---ceeccccCcchhccccccCCcceEEEEeccCceeEec
Confidence            4567889999999999999999999999999999999997   7888999999999999999999999999999999999


Q ss_pred             ECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc-eeeeeeCCCCCeEEEEEcCCCcEEEE
Q 010669          338 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLAT  416 (504)
Q Consensus       338 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s  416 (504)
                      |++..-....+    ..+|...|+++.|..|.+ +++|+.|.+|+|||+++.. ++.++. ..++++.++.+..+..++.
T Consensus       342 DFReaI~sV~V----FQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAi  415 (481)
T KOG0300|consen  342 DFREAIQSVAV----FQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAI  415 (481)
T ss_pred             cchhhcceeee----ecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEe
Confidence            99854332222    338899999999998765 7899999999999999864 566666 4578999999988888888


Q ss_pred             EeCCc-EEEEEcCCCcceeee--ecCCCCCCeeEEEECCCC--CEEEEEeCc--EEEEEeec
Q 010669          417 AAHDG-VKLWDLRKLKNFRSF--ESSDSETPTNSVDFDHSG--SYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       417 ~~~d~-v~vwd~~~~~~~~~~--~~~~~~~~v~~i~~~~~g--~~l~~~~~d--i~vw~~~~  471 (504)
                      --++. |++||+...+..+.-  ....|...|.+++|..+-  .-|+++|-|  +.=|+++.
T Consensus       416 PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  416 PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence            87777 999999865433211  122346789999997653  457778877  77788743

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=2.4e-22  Score=177.22  Aligned_cols=233  Identities=24%  Similarity=0.320  Sum_probs=189.3

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC--EEEEEeCCCcEEEEeCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD--LFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~s~dg~i~iwd~~~  296 (504)
                      ...|.++|.+++|+.||..+++|+.|+.+++||+.+++ +..+..|.++|.++.|-+...  .|++||.|.+|+.||.+.
T Consensus        68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~  146 (347)
T KOG0647|consen   68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS  146 (347)
T ss_pred             hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence            45688999999999999999999999999999999985 556777999999999987555  799999999999999987


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                      .   .++.++. -.+.+.++..  ....++++..+..|.+|+++++.........   .-.-.+.|++..+|....+.|+
T Consensus       147 ~---~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~S---pLk~Q~R~va~f~d~~~~alGs  217 (347)
T KOG0647|consen  147 S---NPVATLQ-LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIES---PLKWQTRCVACFQDKDGFALGS  217 (347)
T ss_pred             C---Ceeeeee-ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcC---cccceeeEEEEEecCCceEeee
Confidence            5   5555554 3466777765  3568889999999999999876443322211   2345789999999998899999


Q ss_pred             CCCcEEEEEcCCC--ceeeeeeCCCC---------CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC
Q 010669          377 SEALVKIWDVKSQ--ANVAKFDGHVG---------AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP  444 (504)
Q Consensus       377 ~dg~I~iwd~~~~--~~~~~~~~~~~---------~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~  444 (504)
                      -.|.+.|..+..+  +.-..|+.|..         +|++|+|+|.-..|++++.|| +.+||-.....++....+  ..+
T Consensus       218 iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qp  295 (347)
T KOG0647|consen  218 IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQP  295 (347)
T ss_pred             ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCc
Confidence            9999999998776  44556666652         688999999988999999999 999998777666666655  789


Q ss_pred             eeEEEECCCCCEEEEE-eCc
Q 010669          445 TNSVDFDHSGSYLAVA-SAD  463 (504)
Q Consensus       445 v~~i~~~~~g~~l~~~-~~d  463 (504)
                      |++..|+.+|.+++.+ |.|
T Consensus       296 Itcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  296 ITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             cceeEecCCCCEEEEEeecc
Confidence            9999999999988765 555

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=6.7e-22  Score=195.59  Aligned_cols=274  Identities=21%  Similarity=0.289  Sum_probs=220.1

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~  297 (504)
                      +..+.+.|+++.=+|--+.++.|..+|+|.+++++.++.+.+++...+.|+.++|..||+ .+++|+..|.+.+||++..
T Consensus       198 f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k  277 (910)
T KOG1539|consen  198 FQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK  277 (910)
T ss_pred             ecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC
Confidence            345678999999999999999999999999999999999999996569999999999998 4677778899999999875


Q ss_pred             CCcceeEEe-ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE-----------------EEEe-------ecCC
Q 010669          298 GNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-----------------LTQV-------SDAG  352 (504)
Q Consensus       298 ~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~-----------------~~~~-------~~~~  352 (504)
                         ..+..+ ..|.+.|....|.|....+++++.|..+++|=.+++.-                 +..+       ...+
T Consensus       278 ---kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~  354 (910)
T KOG1539|consen  278 ---KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAK  354 (910)
T ss_pred             ---eeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecc
Confidence               333333 47889999999999999999999999888774432110                 0000       0000


Q ss_pred             C-------------------------------------------------------------------------------
Q 010669          353 T-------------------------------------------------------------------------------  353 (504)
Q Consensus       353 ~-------------------------------------------------------------------------------  353 (504)
                      .                                                                               
T Consensus       355 ~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~  434 (910)
T KOG1539|consen  355 QDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS  434 (910)
T ss_pred             cCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc
Confidence            0                                                                               


Q ss_pred             ----------CCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee---eCCCCCeEEEEEcCCCcEEEEEeCC
Q 010669          354 ----------DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF---DGHVGAVTAISFSENGYYLATAAHD  420 (504)
Q Consensus       354 ----------~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~g~~l~s~~~d  420 (504)
                                ......+++++.++-|++.+.|+..|.|-+|++.+|-....|   ..|.++|+.++...-++.+++++.+
T Consensus       435 G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~  514 (910)
T KOG1539|consen  435 GRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGAD  514 (910)
T ss_pred             ccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCc
Confidence                      001134678899999999999999999999999999888888   4799999999998888899999999


Q ss_pred             c-EEEEEcCCCcceeeeec---------------------------------------CCCCCCeeEEEECCCCCEEEEE
Q 010669          421 G-VKLWDLRKLKNFRSFES---------------------------------------SDSETPTNSVDFDHSGSYLAVA  460 (504)
Q Consensus       421 ~-v~vwd~~~~~~~~~~~~---------------------------------------~~~~~~v~~i~~~~~g~~l~~~  460 (504)
                      | +++||+.+......+..                                       ..|...|++++|||||++|+++
T Consensus       515 Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa  594 (910)
T KOG1539|consen  515 GILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA  594 (910)
T ss_pred             ceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence            9 99999876442211110                                       1135689999999999999999


Q ss_pred             eCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          461 SAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       461 ~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +.|  |++||+    .++.++..+.-   ..+.+++.|+|+|..
T Consensus       595 smD~tIr~wDl----pt~~lID~~~v---d~~~~sls~SPngD~  631 (910)
T KOG1539|consen  595 SMDSTIRTWDL----PTGTLIDGLLV---DSPCTSLSFSPNGDF  631 (910)
T ss_pred             ecCCcEEEEec----cCcceeeeEec---CCcceeeEECCCCCE
Confidence            998  999999    77888888855   678999999999964

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=1.7e-21  Score=182.52  Aligned_cols=234  Identities=20%  Similarity=0.361  Sum_probs=188.6

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC-----
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED-----  297 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~-----  297 (504)
                      +.-|.|++|.++|+ +++|..+|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||-.-.     
T Consensus       246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~  323 (626)
T KOG2106|consen  246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRET  323 (626)
T ss_pred             ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccc
Confidence            46799999999887 56899999999999988888777779999999999998887 555999999999982110     


Q ss_pred             ----------------C--------Cc--------ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEE
Q 010669          298 ----------------G--------NY--------DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL  345 (504)
Q Consensus       298 ----------------~--------~~--------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~  345 (504)
                                      +        +.        .......+|.+..+.++.||+.+.+++++.|+.+++|+  ..+..
T Consensus       324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~  401 (626)
T KOG2106|consen  324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE  401 (626)
T ss_pred             cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence                            0        00        01123457889999999999999999999999999999  33333


Q ss_pred             EEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEE
Q 010669          346 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL  424 (504)
Q Consensus       346 ~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~v  424 (504)
                      ....      ...+..|+.|||.| .++.|+..|...+.|..+...+..-. .+.++++++|+|+|.+||.|+.|+ |++
T Consensus       402 wt~~------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyi  473 (626)
T KOG2106|consen  402 WTKI------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYI  473 (626)
T ss_pred             EEEE------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence            3322      12578999999999 99999999999999998855554444 488999999999999999999999 999


Q ss_pred             EEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEE
Q 010669          425 WDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQ  468 (504)
Q Consensus       425 wd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~  468 (504)
                      |-+.............+..+|+.+.|++|++||.+-+.|  +-.|.
T Consensus       474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  474 YRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             EEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            998765443333332334899999999999999999888  88894

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=1.3e-22  Score=189.53  Aligned_cols=263  Identities=17%  Similarity=0.290  Sum_probs=207.2

Q ss_pred             CCCCCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCC--ce--EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          221 TSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSG--QI--VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~--~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ....++.++.|+.... .+++.+.|..+++|.-...  +.  +....+.  .-.|++......++++|+..++|+|||++
T Consensus        32 t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~  109 (673)
T KOG4378|consen   32 TAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLR  109 (673)
T ss_pred             CCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhH
Confidence            3355799999998665 2344456888999964321  12  2333332  34555555556899999999999999998


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC-EEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-ILGT  374 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~-~l~~  374 (504)
                      ..   .+.+.+++|.+.|+++.++-...||++++..|.|.|..+.++.....+..    +....+.-+.|+|..+ +|.+
T Consensus       110 ~k---l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~----~sgqsvRll~ys~skr~lL~~  182 (673)
T KOG4378|consen  110 AK---LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI----DSGQSVRLLRYSPSKRFLLSI  182 (673)
T ss_pred             HH---HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec----CCCCeEEEeecccccceeeEe
Confidence            64   66777889999999999999999999999999999999999877766652    2234577899999654 6677


Q ss_pred             EeCCCcEEEEEcCCCceeeee-eCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669          375 GTSEALVKIWDVKSQANVAKF-DGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~~~~~-~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      ++.+|.|.+||+....++..+ ..|..+...|+|+| +..+|++.+.|. |.+||.+..+....+..   ..+...++|.
T Consensus       183 asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~  259 (673)
T KOG4378|consen  183 ASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFS  259 (673)
T ss_pred             eccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeec
Confidence            899999999999888777666 46999999999999 567788889997 99999998777766665   4689999999


Q ss_pred             CCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          452 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       452 ~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      ++|.+|++|+..  +..||+   ......+..+..|  ...|++++|-+.-
T Consensus       260 ~~G~~L~aG~s~G~~i~YD~---R~~k~Pv~v~sah--~~sVt~vafq~s~  305 (673)
T KOG4378|consen  260 ECGTYLCAGNSKGELIAYDM---RSTKAPVAVRSAH--DASVTRVAFQPSP  305 (673)
T ss_pred             CCceEEEeecCCceEEEEec---ccCCCCceEeeec--ccceeEEEeeecc
Confidence            999999999888  777777   3456788888888  7779999998763

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.7e-22  Score=187.81  Aligned_cols=247  Identities=14%  Similarity=0.203  Sum_probs=200.6

Q ss_pred             CEEEEEe-CCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeE
Q 010669          236 DVIATGG-VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ  314 (504)
Q Consensus       236 ~~l~sg~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  314 (504)
                      ++++++. .-..+.+|.+..........--.++|.+++-+|+|.+|+.|+..|.|++|.+.++   ..+..+..|-..|+
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG---~LL~v~~aHYQ~IT  127 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG---ILLNVLSAHYQSIT  127 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccc---cHHHHHHhhcccee
Confidence            4555554 3457889988655444433345688999999999999999989999999999997   67777789999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCC---------CeEEEEeecCCCCCCCCCeEEEEECCC--CCEEEEEeCCCcEEE
Q 010669          315 AVTVHATNKYFVTASLDNTWCFYDLSS---------GICLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKI  383 (504)
Q Consensus       315 ~l~~~p~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~pd--g~~l~~g~~dg~I~i  383 (504)
                      ++.|+-||.+|++||.||.|.+|++..         -+....+     ..|.-+|+.+...+.  ...+++++.|.++++
T Consensus       128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f-----~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~  202 (476)
T KOG0646|consen  128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF-----SDHTLSITDLQIGSGGTNARLYTASEDRTIKL  202 (476)
T ss_pred             EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee-----ccCcceeEEEEecCCCccceEEEecCCceEEE
Confidence            999999999999999999999998742         1223333     367888999988875  368999999999999


Q ss_pred             EEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc----------------ceeeeecCCCCCCee
Q 010669          384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK----------------NFRSFESSDSETPTN  446 (504)
Q Consensus       384 wd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~----------------~~~~~~~~~~~~~v~  446 (504)
                      ||+..+..+.++. ....+.+++.+|-+..++.|+.+| |.+.++.+..                .+..+.++.....|+
T Consensus       203 wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT  281 (476)
T KOG0646|consen  203 WDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT  281 (476)
T ss_pred             EEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence            9999999888876 557899999999999999999999 8888775433                233444554445999


Q ss_pred             EEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669          447 SVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       447 ~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~  497 (504)
                      +++++-||..|++|+.|  +.|||+    .+.++++++..-  .++|+.+.+-
T Consensus       282 cLais~DgtlLlSGd~dg~VcvWdi----~S~Q~iRtl~~~--kgpVtnL~i~  328 (476)
T KOG0646|consen  282 CLAISTDGTLLLSGDEDGKVCVWDI----YSKQCIRTLQTS--KGPVTNLQIN  328 (476)
T ss_pred             EEEEecCccEEEeeCCCCCEEEEec----chHHHHHHHhhh--ccccceeEee
Confidence            99999999999999999  999999    778888888643  7899999883

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1.8e-23  Score=188.32  Aligned_cols=222  Identities=21%  Similarity=0.324  Sum_probs=186.4

Q ss_pred             EEEcccCccceeEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEE
Q 010669          258 VTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF  336 (504)
Q Consensus       258 ~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~i  336 (504)
                      +..+.+|.+.|.|++=+|.. ..+++|+.||.|+|||+...   .+..++..|.+.|.+|+++.  ..+++++.|.+|+.
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence            44567899999999999866 67999999999999999876   78889999999999999975  78999999999999


Q ss_pred             EECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCC-cEEE
Q 010669          337 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLA  415 (504)
Q Consensus       337 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~  415 (504)
                      |.++.. ....+.      ....+..+..+..+..+++++.  .|.|||.....++..+..-...|.++.|+|.. ..|+
T Consensus       134 wk~~~~-p~~til------g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa  204 (433)
T KOG0268|consen  134 WKIDGP-PLHTIL------GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA  204 (433)
T ss_pred             eeccCC-cceeee------ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence            998764 444443      2346778888888888999876  59999999999999998777899999999965 5667


Q ss_pred             EEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCcee
Q 010669          416 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAAS  492 (504)
Q Consensus       416 s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~  492 (504)
                      +++.|+ |.+||+|.+.+++.+..   ....+.|+|+|.+-.+++|++|  +..||+   ..--..+..+.+|  .+.|.
T Consensus       205 s~~sDrsIvLyD~R~~~Pl~KVi~---~mRTN~IswnPeafnF~~a~ED~nlY~~Dm---R~l~~p~~v~~dh--vsAV~  276 (433)
T KOG0268|consen  205 SCASDRSIVLYDLRQASPLKKVIL---TMRTNTICWNPEAFNFVAANEDHNLYTYDM---RNLSRPLNVHKDH--VSAVM  276 (433)
T ss_pred             eeccCCceEEEecccCCccceeee---eccccceecCccccceeeccccccceehhh---hhhcccchhhccc--ceeEE
Confidence            776787 99999999999888766   3567889999977777888888  888887   3445678888998  99999


Q ss_pred             EEEEeecCc
Q 010669          493 FLFLFVLGQ  501 (504)
Q Consensus       493 ~l~~~~~g~  501 (504)
                      +++|+|.|+
T Consensus       277 dVdfsptG~  285 (433)
T KOG0268|consen  277 DVDFSPTGQ  285 (433)
T ss_pred             EeccCCCcc
Confidence            999999997

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=194.13  Aligned_cols=233  Identities=21%  Similarity=0.359  Sum_probs=198.7

Q ss_pred             CCeEEEEeccC-----CCEEEEEeCCCcEEEEcCCCCce-EEEcc-----cCccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669          224 PGIVSLDIHYS-----KDVIATGGVDTNAVLFDRPSGQI-VTTLS-----GHSKKVTSVKFVTEGDLFLTGSADKTVRVW  292 (504)
Q Consensus       224 ~~I~~~~~s~~-----~~~l~sg~~dg~i~vwd~~~~~~-~~~~~-----~h~~~v~~l~~s~~~~~l~s~s~dg~i~iw  292 (504)
                      ++|..+++...     .+.+++.-.+..++.|+..+... ...+.     .....+++++.++.|++.+.|+..|+|-+|
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f  475 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF  475 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence            46777766542     24566666778899999876544 22222     233678999999999999999999999999


Q ss_pred             eCCCCCCcceeEEe---ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC
Q 010669          293 QGSEDGNYDCKHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG  369 (504)
Q Consensus       293 d~~~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg  369 (504)
                      +++.+   .....+   ..|.++|++++....++.+++++.+|.+++||..+...+..+..      ...+.++..|...
T Consensus       476 NmQSG---i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l------~~~~~~iv~hr~s  546 (910)
T KOG1539|consen  476 NMQSG---IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL------GSSITGIVYHRVS  546 (910)
T ss_pred             EcccC---eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc------CCCcceeeeeehh
Confidence            99986   455555   48999999999998889999999999999999999887777653      2568999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669          370 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV  448 (504)
Q Consensus       370 ~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i  448 (504)
                      .+++.+..|-.|+++|+.+.+.++.|.+|.+.|++++|||||+||++++.|+ |++||+.++.++-.+..   ..++.++
T Consensus       547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---d~~~~sl  623 (910)
T KOG1539|consen  547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---DSPCTSL  623 (910)
T ss_pred             hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---CCcceee
Confidence            9999999999999999999999999999999999999999999999999998 99999999999887766   4789999


Q ss_pred             EECCCCCEEEEEeCc---EEEEE
Q 010669          449 DFDHSGSYLAVASAD---IRVYQ  468 (504)
Q Consensus       449 ~~~~~g~~l~~~~~d---i~vw~  468 (504)
                      .|+|+|.|||+...|   |.+|.
T Consensus       624 s~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  624 SFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             EECCCCCEEEEEEecCceEEEEE
Confidence            999999999999887   88885

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=4e-22  Score=175.06  Aligned_cols=207  Identities=25%  Similarity=0.429  Sum_probs=168.2

Q ss_pred             cCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCc---------cee---EEeccCCcCeEEEEEcc-CCCEEEEE
Q 010669          263 GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNY---------DCK---HTLKDHTAEVQAVTVHA-TNKYFVTA  328 (504)
Q Consensus       263 ~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~---------~~~---~~~~~h~~~v~~l~~~p-~~~~l~s~  328 (504)
                      .|.+.|+++...+ .|+++++|+.||.|.+||++....+         .++   ..-.+|.-.|.++.|-| |...|.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            4778899999987 7889999999999999998764311         111   11136778899999998 55688899


Q ss_pred             eCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEE
Q 010669          329 SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI  405 (504)
Q Consensus       329 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l  405 (504)
                      +.|.++++||..+.+....+..      +..|.+-+++|   ..-++|+|..+-.|++.|+.+|...+.+.+|.+.|..+
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~m------e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV  194 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFKM------EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV  194 (397)
T ss_pred             cccceEEEeecccceeeEEeec------CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence            9999999999999888777752      35688888888   34578899999999999999999999999999999999


Q ss_pred             EEcCCC-cEEEEEeCCc-EEEEEcCCC-cceeeeecC------------CCCCCeeEEEECCCCCEEEEEeCc--EEEEE
Q 010669          406 SFSENG-YYLATAAHDG-VKLWDLRKL-KNFRSFESS------------DSETPTNSVDFDHSGSYLAVASAD--IRVYQ  468 (504)
Q Consensus       406 ~~s~~g-~~l~s~~~d~-v~vwd~~~~-~~~~~~~~~------------~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~  468 (504)
                      .|+|.. ..|++|+.|+ |++||+|.. .+...+..+            .+.+.+++++|..+|.++++++.|  +++|+
T Consensus       195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence            999965 5678889999 999999875 344433322            246789999999999999999887  99999


Q ss_pred             eeccCcc
Q 010669          469 VASVKAD  475 (504)
Q Consensus       469 ~~~~~~~  475 (504)
                      ..++..+
T Consensus       275 ~~~G~nt  281 (397)
T KOG4283|consen  275 MESGRNT  281 (397)
T ss_pred             cccCccc
Confidence            8665543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.6e-21  Score=195.09  Aligned_cols=228  Identities=18%  Similarity=0.302  Sum_probs=189.5

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      +...|.+++..  +.+|++|+.+++|.+|...+++.-..+...+-++++++|+.+|++++.||.|-.|++-++.+.   .
T Consensus        55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~---s  129 (933)
T KOG1274|consen   55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS---S  129 (933)
T ss_pred             cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc---c
Confidence            45567777644  569999999999999999888766566666788999999999999999999999999999876   5


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC---CCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT---DGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                      ....+.+|.++|.++.|+|.+++|++.+.||.|++||+.++.....+.....   ......+..++|+|+|..|++...|
T Consensus       130 ~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d  209 (933)
T KOG1274|consen  130 QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD  209 (933)
T ss_pred             hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC
Confidence            6677889999999999999999999999999999999999887766653211   0113456789999998889999999


Q ss_pred             CcEEEEEcCCCceeeeeeC--CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          379 ALVKIWDVKSQANVAKFDG--HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      +.|++|+...+.....+..  +...++++.|+|+|.|||+++.++ |.|||..+..      .+.....|.+++|.|+++
T Consensus       210 ~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~------~~~~~~~Vc~~aw~p~~n  283 (933)
T KOG1274|consen  210 NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE------RHEFKRAVCCEAWKPNAN  283 (933)
T ss_pred             CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch------hccccceeEEEecCCCCC
Confidence            9999999999988877754  444599999999999999999998 9999998721      133356899999999887


Q ss_pred             EEEEE
Q 010669          456 YLAVA  460 (504)
Q Consensus       456 ~l~~~  460 (504)
                      .+-..
T Consensus       284 ~it~~  288 (933)
T KOG1274|consen  284 AITLI  288 (933)
T ss_pred             eeEEE
Confidence            65543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=7.7e-22  Score=183.16  Aligned_cols=232  Identities=21%  Similarity=0.274  Sum_probs=194.7

Q ss_pred             ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCe
Q 010669          265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGI  343 (504)
Q Consensus       265 ~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~  343 (504)
                      .+.|+++.|+|...+|++|+.||+++||.++...+ ..++.+.-...+|.+..|+|+|. .+++++....++.||+.+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            46799999999999999999999999999876433 35555555678999999999999 89999999999999999887


Q ss_pred             EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-E
Q 010669          344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-V  422 (504)
Q Consensus       344 ~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v  422 (504)
                      ....-...+.  ....+..+..++++++|+..+..|.|.+....+++.+..++ -.+.|..++|+.+|+.|++++.+| |
T Consensus       292 ~~k~~~~~g~--e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV  368 (514)
T KOG2055|consen  292 VTKLKPPYGV--EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEV  368 (514)
T ss_pred             cccccCCCCc--ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceE
Confidence            6554432222  13467889999999999999999999999999999999888 568899999999999999988888 9


Q ss_pred             EEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeecc--CccceeEEEccCCCCCCceeEEEEee
Q 010669          423 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV--KADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       423 ~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~--~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      .+||++...+++.+.... .-.-++++.+++|.|||+|+..  |.||+.++.  ....++++++...  ...|++|.|.+
T Consensus       369 ~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--tt~Itsl~Fn~  445 (514)
T KOG2055|consen  369 YVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--TTAITSLQFNH  445 (514)
T ss_pred             EEEecCCcceEEEEeecC-ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--heeeeeeeeCc
Confidence            999999999999887643 2334678888999999999988  999996542  3456778888776  88999999999


Q ss_pred             cCccc
Q 010669          499 LGQTC  503 (504)
Q Consensus       499 ~g~~~  503 (504)
                      ++|++
T Consensus       446 d~qiL  450 (514)
T KOG2055|consen  446 DAQIL  450 (514)
T ss_pred             chhhh
Confidence            99975

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=3.9e-21  Score=186.66  Aligned_cols=279  Identities=15%  Similarity=0.265  Sum_probs=213.8

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc-------eEEEcccCccceeEEEEeeCCCEEEEEeCCCcE
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-------IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTV  289 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i  289 (504)
                      .+..+|.+-|+++.|+|.+..|++++.|.++.+|...+..       .+..+.+..+......|+|+++.+++-+..|-.
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF  340 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence            3567999999999999999999999999999999865431       122334556678999999999999999999999


Q ss_pred             EEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC---------------------------
Q 010669          290 RVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG---------------------------  342 (504)
Q Consensus       290 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~---------------------------  342 (504)
                      ++|.......+.....+.+|.+.|.+++|+|.|.++++.|.|.+-++|-.-..                           
T Consensus       341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~  420 (764)
T KOG1063|consen  341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL  420 (764)
T ss_pred             EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence            99985554555666677899999999999999999999999988777533200                           


Q ss_pred             --------eEEEEeecC---------------------------------------------------------------
Q 010669          343 --------ICLTQVSDA---------------------------------------------------------------  351 (504)
Q Consensus       343 --------~~~~~~~~~---------------------------------------------------------------  351 (504)
                              +.++.+...                                                               
T Consensus       421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L  500 (764)
T KOG1063|consen  421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL  500 (764)
T ss_pred             eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence                    000000000                                                               


Q ss_pred             -------------------CCCCCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeCCCCCeEEEEE
Q 010669          352 -------------------GTDGRPEGYTSAAFHPDGLILGTGTSEA-----LVKIWDVKSQANVAKFDGHVGAVTAISF  407 (504)
Q Consensus       352 -------------------~~~~~~~~v~~~~~~pdg~~l~~g~~dg-----~I~iwd~~~~~~~~~~~~~~~~i~~l~~  407 (504)
                                         ..-+|...|.+++.+|+|+++|+++...     .|++|+..+...+..+.+|.-.|+.++|
T Consensus       501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F  580 (764)
T KOG1063|consen  501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF  580 (764)
T ss_pred             cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence                               0035566788999999999999998653     5999999999888899999999999999


Q ss_pred             cCCCcEEEEEeCCc-EEEEEcCCCcc-eeeee-cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEE-
Q 010669          408 SENGYYLATAAHDG-VKLWDLRKLKN-FRSFE-SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKT-  481 (504)
Q Consensus       408 s~~g~~l~s~~~d~-v~vwd~~~~~~-~~~~~-~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~-  481 (504)
                      ||||++|++.+.|. +.+|....... ...+. ...|..-|+++.|+|++.+++++|.|  ++||.......  +.+.. 
T Consensus       581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d--~~i~~~  658 (764)
T KOG1063|consen  581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD--KYISRF  658 (764)
T ss_pred             CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh--hhhhhh
Confidence            99999999999998 99998754321 11111 23346678999999999999999999  99999844321  22222 


Q ss_pred             -ccCCCCCCceeEEEEeec
Q 010669          482 -FPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       482 -~~~h~~~~~v~~l~~~~~  499 (504)
                       ...+  ...||++++.+.
T Consensus       659 a~~~~--~~aVTAv~~~~~  675 (764)
T KOG1063|consen  659 ACLKF--SLAVTAVAYLPV  675 (764)
T ss_pred             chhcc--CCceeeEEeecc
Confidence             2233  778999888764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=3e-22  Score=178.40  Aligned_cols=243  Identities=21%  Similarity=0.331  Sum_probs=188.5

Q ss_pred             CCCCeEEEEeccCC----CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCC
Q 010669          222 SKPGIVSLDIHYSK----DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       222 ~~~~I~~~~~s~~~----~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~  296 (504)
                      |......++|+.+.    .++|+||.-|.|+|.|+.+++....+.+|...|+.+.|+|+ .++++++|.|.+|++|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            66678888888753    38999999999999999999999999999999999999995 56899999999999999998


Q ss_pred             CCCcceeEEe---ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecC----------------------
Q 010669          297 DGNYDCKHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA----------------------  351 (504)
Q Consensus       297 ~~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----------------------  351 (504)
                      .   .|+..+   .+|.+.|.++.|+++|.+|++++.|.++++|++...+....+...                      
T Consensus       168 ~---~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f  244 (385)
T KOG1034|consen  168 D---VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF  244 (385)
T ss_pred             C---eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence            7   676665   479999999999999999999999999999999843221111100                      


Q ss_pred             -CCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc-CCCc-------------eeeeeeCCCCCeEEEEE--cCCCcEE
Q 010669          352 -GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDV-KSQA-------------NVAKFDGHVGAVTAISF--SENGYYL  414 (504)
Q Consensus       352 -~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~-~~~~-------------~~~~~~~~~~~i~~l~~--s~~g~~l  414 (504)
                       ....|...|-|+.|-  |.++++-+-++.|..|.. +-.+             .+..++-....|.-+.|  .+-+++|
T Consensus       245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l  322 (385)
T KOG1034|consen  245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML  322 (385)
T ss_pred             cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence             122455566666665  578888888899999987 2111             12333334445655554  5568899


Q ss_pred             EEEeCCc-EEEEEcCCCcce--eeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669          415 ATAAHDG-VKLWDLRKLKNF--RSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQV  469 (504)
Q Consensus       415 ~s~~~d~-v~vwd~~~~~~~--~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~  469 (504)
                      +.|...| |++||++...+.  .++..+.....|...+|+.||.+|+..++|..||.+
T Consensus       323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw  380 (385)
T KOG1034|consen  323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW  380 (385)
T ss_pred             hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence            9999998 999999987653  233333346789999999999999999999777776

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=2.9e-21  Score=179.20  Aligned_cols=257  Identities=18%  Similarity=0.212  Sum_probs=195.7

Q ss_pred             ccCCCCCeEEEEeccCC--CEEEEEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEE
Q 010669          219 HKTSKPGIVSLDIHYSK--DVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRV  291 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~--~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~i  291 (504)
                      .+-+..+|++++|+|..  +++++|..-|+|-+||+.+.    .-+..+..|..+|.++.|+| +...+++.|+||+|++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            44567899999999965  48899999999999999522    33566788999999999999 5568999999999999


Q ss_pred             EeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCC
Q 010669          292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGL  370 (504)
Q Consensus       292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~  370 (504)
                      -|++.. ....+..+......+.++.|+.+...++.++.=|...+||++++.......    .-|...|..++++| ...
T Consensus       262 ~D~~~~-i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~----~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  262 QDFEGN-ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL----RLHKKKITSVALNPVCPW  336 (498)
T ss_pred             eeecch-hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh----hhhhcccceeecCCCCch
Confidence            999874 334444444345567788888888888888888899999999876533221    14566899999999 567


Q ss_pred             EEEEEeCCCcEEEEEcCCCc----eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC----CCcceeeeecCC-
Q 010669          371 ILGTGTSEALVKIWDVKSQA----NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR----KLKNFRSFESSD-  440 (504)
Q Consensus       371 ~l~~g~~dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~----~~~~~~~~~~~~-  440 (504)
                      +|++++.|++.+|||+|...    ++.....|...|.+..|||.|-.|++.+.|. |+|||..    ...+...+.... 
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~  416 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR  416 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCc
Confidence            89999999999999998642    2233345999999999999877788888887 9999983    333333333211 


Q ss_pred             CC--CCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccC
Q 010669          441 SE--TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       441 ~~--~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      +.  -......|+|+..++++|..-  |-||+-    +.++.+..+.+
T Consensus       417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~----~~~q~v~el~~  460 (498)
T KOG4328|consen  417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG----NGGQMVCELHD  460 (498)
T ss_pred             ccccccchhheeCCCccEEEEeccCcceeEEcC----CCCEEeeeccC
Confidence            11  124467899999999999876  999995    55665666543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=2.4e-21  Score=186.40  Aligned_cols=265  Identities=16%  Similarity=0.225  Sum_probs=190.4

Q ss_pred             EEEEeccC---CCEEEEEeCCCcEEEEcCCCCce------EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          227 VSLDIHYS---KDVIATGGVDTNAVLFDRPSGQI------VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       227 ~~~~~s~~---~~~l~sg~~dg~i~vwd~~~~~~------~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      .++.|++.   ...|+.+..||.|.++|......      +.....|...|..+.|-|....|++++.|.++++||+.+.
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            34556653   34899999999999999765432      3455689999999999996668999999999999999885


Q ss_pred             CCcceeEE--eccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEE----------eec------------CC
Q 010669          298 GNYDCKHT--LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQ----------VSD------------AG  352 (504)
Q Consensus       298 ~~~~~~~~--~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~----------~~~------------~~  352 (504)
                         .+...  +.+|.+.|.+++|+|.+ ..|++|+.||.|.|||++-......          ...            ..
T Consensus       133 ---~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k  209 (720)
T KOG0321|consen  133 ---RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK  209 (720)
T ss_pred             ---eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence               34433  78999999999999965 5889999999999999974331000          000            00


Q ss_pred             CCCCCCCeEE---EEECCCCCEEEEEeC-CCcEEEEEcCCCceeee--------eeCC---CCCeEEEEEcCCCcEEEEE
Q 010669          353 TDGRPEGYTS---AAFHPDGLILGTGTS-EALVKIWDVKSQANVAK--------FDGH---VGAVTAISFSENGYYLATA  417 (504)
Q Consensus       353 ~~~~~~~v~~---~~~~pdg~~l~~g~~-dg~I~iwd~~~~~~~~~--------~~~~---~~~i~~l~~s~~g~~l~s~  417 (504)
                      ...+...|.+   +.+..|...||+++. |+.|+|||++.......        +..|   .-.++++.....|.+|++.
T Consensus       210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As  289 (720)
T KOG0321|consen  210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS  289 (720)
T ss_pred             cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence            1122333444   555667778888777 99999999987644322        2223   2367788888778888777


Q ss_pred             eCCc-EEEEEcCCCcc--eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCcee
Q 010669          418 AHDG-VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAAS  492 (504)
Q Consensus       418 ~~d~-v~vwd~~~~~~--~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~  492 (504)
                      +.|+ |++|+++....  +..+..+.....-..-..+|++.+|++|+.|  ..+|.+   +..+.....+.+|  .-.|+
T Consensus       290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~v---s~~e~~~~~l~Gh--t~eVt  364 (720)
T KOG0321|consen  290 CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVV---SSPEAPPALLLGH--TREVT  364 (720)
T ss_pred             ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeee---cCccCChhhhhCc--ceEEE
Confidence            7787 99999987543  3333332212222334568999999999999  999998   4557777788898  77899


Q ss_pred             EEEEeec
Q 010669          493 FLFLFVL  499 (504)
Q Consensus       493 ~l~~~~~  499 (504)
                      ++++.|.
T Consensus       365 ~V~w~pS  371 (720)
T KOG0321|consen  365 TVRWLPS  371 (720)
T ss_pred             EEeeccc
Confidence            9988764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=8.8e-21  Score=168.73  Aligned_cols=268  Identities=18%  Similarity=0.241  Sum_probs=196.1

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCc------------eEEEcc-cCccceeEEEEe-------eCCCEEEEEeC
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ------------IVTTLS-GHSKKVTSVKFV-------TEGDLFLTGSA  285 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~------------~~~~~~-~h~~~v~~l~~s-------~~~~~l~s~s~  285 (504)
                      ...+.|+|||..|++-+.|..+.+|++...-            ....++ .....|...+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            4578999999999999999999999875210            011111 123457777774       56778999999


Q ss_pred             CCcEEEEeCCCCCCcceeEEeccCCcC---eEEEEEccCCCEEEEEeCCCeEEEEEC-CCCeEEEEe--ecCCCCCCCCC
Q 010669          286 DKTVRVWQGSEDGNYDCKHTLKDHTAE---VQAVTVHATNKYFVTASLDNTWCFYDL-SSGICLTQV--SDAGTDGRPEG  359 (504)
Q Consensus       286 dg~i~iwd~~~~~~~~~~~~~~~h~~~---v~~l~~~p~~~~l~s~s~dg~i~iwd~-~~~~~~~~~--~~~~~~~~~~~  359 (504)
                      +.-|++||.-++. .++......|.+.   ..+++|+|||.+|++| ....|++||+ +.|..-...  ...+..+..+-
T Consensus       132 ~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  132 DQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             cCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            9999999998853 2333333345543   4689999999999876 5679999999 555432221  11212344667


Q ss_pred             eEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCc-ceee
Q 010669          360 YTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLK-NFRS  435 (504)
Q Consensus       360 v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~-~~~~  435 (504)
                      +.|++|+| +...+++|+....+-||.-..+.++..+-+|.+.|+.+.|.++|+.|++|....  |-.||+|..+ ++..
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~  289 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA  289 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence            89999999 667999999999999999888999999999999999999999999999998764  9999999754 4444


Q ss_pred             eecCCC-CCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          436 FESSDS-ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       436 ~~~~~~-~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      +..+.. ...-.-+..+|+|++|++|+.+  |++||+.   +-+..+..+..|  ...|..+++.|-=
T Consensus       290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk---~~gn~~sv~~~~--sd~vNgvslnP~m  352 (406)
T KOG2919|consen  290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK---DLGNEVSVTGNY--SDTVNGVSLNPIM  352 (406)
T ss_pred             hhhhccCccceEEEecCCCCceeeccCCCccEEEEecC---CCCCcccccccc--cccccceecCccc
Confidence            444321 1112234557899999999888  9999982   235666677666  6677777776643

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=4e-21  Score=184.96  Aligned_cols=250  Identities=17%  Similarity=0.278  Sum_probs=187.4

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE--cccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ...|.+.|..+.|-|....|++++.|.++++||+++++++..  +.+|.+.|.+++|.+ +...|++|+.||.|.|||+.
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            456889999999999666899999999999999999988777  889999999999999 45579999999999999975


Q ss_pred             CCCC---------------c---------ceeEEeccCCcCeEE---EEEccCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 010669          296 EDGN---------------Y---------DCKHTLKDHTAEVQA---VTVHATNKYFVTASL-DNTWCFYDLSSGICLTQ  347 (504)
Q Consensus       296 ~~~~---------------~---------~~~~~~~~h~~~v~~---l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~  347 (504)
                      -...               .         +.+..-..+...|.+   +.+..|...|++++. |+.|+|||+++......
T Consensus       176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r  255 (720)
T KOG0321|consen  176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR  255 (720)
T ss_pred             ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence            4320               0         001112234444544   455568889999988 99999999998766554


Q ss_pred             eecCCC---C---CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC--ceeeeeeCCCCC--eEEEEEcCCCcEEEEE
Q 010669          348 VSDAGT---D---GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGA--VTAISFSENGYYLATA  417 (504)
Q Consensus       348 ~~~~~~---~---~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~--~~~~~~~~~~~~--i~~l~~s~~g~~l~s~  417 (504)
                      ....+.   .   .....+.++.....|.+|++.+.|+.|++||+.+-  .++..+.++...  -..-..+|++.+|++|
T Consensus       256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~Sg  335 (720)
T KOG0321|consen  256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSG  335 (720)
T ss_pred             cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEecc
Confidence            432211   1   12456888999999999999999999999999864  345555554321  1223468899999999


Q ss_pred             eCCc-EEEEEcCCCccee-eeecCCCCCCeeEEEECCCC-CEEEEEeCc--EEEEEee
Q 010669          418 AHDG-VKLWDLRKLKNFR-SFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVA  470 (504)
Q Consensus       418 ~~d~-v~vwd~~~~~~~~-~~~~~~~~~~v~~i~~~~~g-~~l~~~~~d--i~vw~~~  470 (504)
                      +.|. .++|.+.+...-. .+.++  ...|++++|.|.. .-++++++|  ++||++.
T Consensus       336 Ssd~~ayiw~vs~~e~~~~~l~Gh--t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  336 SSDEQAYIWVVSSPEAPPALLLGH--TREVTTVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             CCCcceeeeeecCccCChhhhhCc--ceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence            9998 9999998765433 33333  6789999998854 345566888  9999984

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=5.2e-21  Score=182.82  Aligned_cols=291  Identities=19%  Similarity=0.194  Sum_probs=217.3

Q ss_pred             CCCCCChhHHhhccccceeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCC
Q 010669          198 PPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG  277 (504)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~  277 (504)
                      -+.+++...+..|...-. .++.+|.+.|.|+..+|.|.+|++|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.+
T Consensus       376 iPkLPsp~dLrPFPt~~~-lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~  453 (733)
T KOG0650|consen  376 IPKLPSPKDLRPFPTRCA-LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLS  453 (733)
T ss_pred             cccCCChhhcCCCcceee-eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCC
Confidence            356777777777765443 4688999999999999999999999999999999999999999887 45679999999977


Q ss_pred             CE-EEEEeCCCcEEEEeCCCCC----------------------------------CcceeEEeccCCcCeEEEEEccCC
Q 010669          278 DL-FLTGSADKTVRVWQGSEDG----------------------------------NYDCKHTLKDHTAEVQAVTVHATN  322 (504)
Q Consensus       278 ~~-l~s~s~dg~i~iwd~~~~~----------------------------------~~~~~~~~~~h~~~v~~l~~~p~~  322 (504)
                      .. ++.+..++.+.|-+..-+.                                  ...-+...-.|...|..+.||..|
T Consensus       454 ~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG  533 (733)
T KOG0650|consen  454 DLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG  533 (733)
T ss_pred             CceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence            63 3333333335554421110                                  000112233577889999999999


Q ss_pred             CEEEEEeCC---CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC
Q 010669          323 KYFVTASLD---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV  399 (504)
Q Consensus       323 ~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~  399 (504)
                      .||++...+   ..|.|+++.......-+.     ...+.+.++.|||...+|++++. ..|+|||+.....+..+....
T Consensus       534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~-----kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~  607 (733)
T KOG0650|consen  534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFR-----KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS  607 (733)
T ss_pred             ceEEEeccCCCcceEEEEecccccccCchh-----hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC
Confidence            999998764   468899988765544442     23457999999999999988875 579999998888887777667


Q ss_pred             CCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC-cceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeec----
Q 010669          400 GAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS----  471 (504)
Q Consensus       400 ~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~-~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~----  471 (504)
                      ..|..++.+|+|..|+.|+.|+ +..||+.-. ++.+++..|  ...+++++|++.-.++++|+.|  +.||--..    
T Consensus       608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl  685 (733)
T KOG0650|consen  608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL  685 (733)
T ss_pred             eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh--hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence            7899999999999999999998 999999754 566666665  6789999999999999999998  55553111    


Q ss_pred             -cCccceeEEEccCCCCC--CceeEEEEee
Q 010669          472 -VKADWNCIKTFPDLSGT--GAASFLFLFV  498 (504)
Q Consensus       472 -~~~~~~~i~~~~~h~~~--~~v~~l~~~~  498 (504)
                       .+.-.-.++.+.+|.-.  ..|....|.|
T Consensus       686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP  715 (733)
T KOG0650|consen  686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHP  715 (733)
T ss_pred             hcCCceEeeeeccCceeecccceEeecccC
Confidence             11235578899999432  2355555655

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=6.7e-21  Score=173.68  Aligned_cols=231  Identities=22%  Similarity=0.316  Sum_probs=183.7

Q ss_pred             EEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCC----cceeEEeccCCcCeEEEEEccC-CCEEEEEeCCC
Q 010669          259 TTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDN  332 (504)
Q Consensus       259 ~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg  332 (504)
                      -.+.||+++|..++|+| +...+++||.|.+|.||.+..++.    ...+..+.+|...|--+.|||. .+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            34569999999999999 666899999999999999876532    2456778899999999999995 57899999999


Q ss_pred             eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCC-CeEEEEEcCCC
Q 010669          333 TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG-AVTAISFSENG  411 (504)
Q Consensus       333 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~g  411 (504)
                      +|.+||+.+|+.+..+      .|...|.++.|+-||.+|++.+.|..|||||.++++.+..-.+|.+ .-..+.|-.+|
T Consensus       155 ~v~iWnv~tgeali~l------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g  228 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITL------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG  228 (472)
T ss_pred             eEEEEeccCCceeeec------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence            9999999999988776      4788999999999999999999999999999999999988888876 45567788899


Q ss_pred             cEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccC
Q 010669          412 YYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       412 ~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      .++.+|-..   . +-+||..+......+...+....|.---|+++.++++.+|..   |+.|.+.....-...+.+|..
T Consensus       229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S  308 (472)
T KOG0303|consen  229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS  308 (472)
T ss_pred             ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence            866666433   3 999998876654444444445678778899999998877754   999999554333444555544


Q ss_pred             CCCCCceeEEEEee
Q 010669          485 LSGTGAASFLFLFV  498 (504)
Q Consensus       485 h~~~~~v~~l~~~~  498 (504)
                         ..+-.+|.|-|
T Consensus       309 ---~epQRG~g~mP  319 (472)
T KOG0303|consen  309 ---KEPQRGMGFMP  319 (472)
T ss_pred             ---CCccccccccc
Confidence               44555555544

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=7.8e-21  Score=172.30  Aligned_cols=207  Identities=19%  Similarity=0.373  Sum_probs=163.8

Q ss_pred             ccCccceeEEEEeeCC--CEEEEEeCCCcEEEEeCCC-------------CCCcceeEEeccCCcCeEEEEEccCC-CEE
Q 010669          262 SGHSKKVTSVKFVTEG--DLFLTGSADKTVRVWQGSE-------------DGNYDCKHTLKDHTAEVQAVTVHATN-KYF  325 (504)
Q Consensus       262 ~~h~~~v~~l~~s~~~--~~l~s~s~dg~i~iwd~~~-------------~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l  325 (504)
                      ..|.+.++.+.-++-+  .+.++-+..|.|.||++..             .....++.++.+|.+.=++++|+|-. ..+
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3577888888877754  4566667899999999643             12346788889999999999999933 358


Q ss_pred             EEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCc--eeeeeeCCCCCe
Q 010669          326 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAV  402 (504)
Q Consensus       326 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~--~~~~~~~~~~~i  402 (504)
                      ++|..-+.|++|...++.-.....  ...+|...|-.++|+| ....|++|+-||+|+|||+|.+.  .....+.|.+.|
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~--Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV  305 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQR--PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV  305 (440)
T ss_pred             ccCccccceEeeeeccCceeecCc--cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence            888888999999998865433322  2447899999999999 55789999999999999999883  222337899999


Q ss_pred             EEEEEcCCCcEEEEEeCCc-EEEEEcCCC---cceeeeecCCCCCCeeEEEECCCC-CEEEEEeCc--EEEEEeecc
Q 010669          403 TAISFSENGYYLATAAHDG-VKLWDLRKL---KNFRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASV  472 (504)
Q Consensus       403 ~~l~~s~~g~~l~s~~~d~-v~vwd~~~~---~~~~~~~~~~~~~~v~~i~~~~~g-~~l~~~~~d--i~vw~~~~~  472 (504)
                      +-|.|+.+-.+|++|+++| ++|||+|..   +++..|+.|  ..+|+++.|+|.. ..++++|.|  |.+||+...
T Consensus       306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H--k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH--KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec--cCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            9999999888999999999 999999864   467778777  7899999999954 556666666  999999654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=3.7e-21  Score=179.88  Aligned_cols=219  Identities=17%  Similarity=0.247  Sum_probs=180.8

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEE
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  305 (504)
                      -.|++......++++||..+.|+|||+....+.+.+++|...|+++.+.....+|++++..|.|.|..+.++   .....
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~---~~tt~  158 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK---QKTTT  158 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC---ccccc
Confidence            345555555589999999999999999977778889999999999999998999999999999999998885   33344


Q ss_pred             eccC-CcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEE
Q 010669          306 LKDH-TAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVK  382 (504)
Q Consensus       306 ~~~h-~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~  382 (504)
                      |... ...|.-+.|+|..+ +|.+++.+|.|.+||+.....+..+.    ..|..+...++|+| +..+|++.+.|..|.
T Consensus       159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~----~~HsAP~~gicfspsne~l~vsVG~Dkki~  234 (673)
T KOG4378|consen  159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS----EAHSAPCRGICFSPSNEALLVSVGYDKKIN  234 (673)
T ss_pred             eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh----hhccCCcCcceecCCccceEEEecccceEE
Confidence            4433 34566899999776 56678999999999999877766553    37888999999999 667889999999999


Q ss_pred             EEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECCCC
Q 010669          383 IWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHSG  454 (504)
Q Consensus       383 iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~~g  454 (504)
                      +||.+.......+. ...+.+.++|+++|.+|+.|+..| |..||+|..+ ++..+..|  ...|++++|-|.-
T Consensus       235 ~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah--~~sVt~vafq~s~  305 (673)
T KOG4378|consen  235 IYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH--DASVTRVAFQPSP  305 (673)
T ss_pred             Eeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec--ccceeEEEeeecc
Confidence            99999877666665 446899999999999999999999 9999999754 55566555  5679999998765

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.86  E-value=1.3e-20  Score=181.99  Aligned_cols=254  Identities=16%  Similarity=0.272  Sum_probs=197.5

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      .|..++|-|||..|+.+.. ..+.+||...|..+.++++|.+.|+|++|+.||+.+++|+.|..|.+|+..-.+    +.
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG----~L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG----IL   88 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc----ee
Confidence            6889999999998877754 479999999999999999999999999999999999999999999999866532    12


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW  384 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iw  384 (504)
                      . ..|++.|.|+.|+|-...+++++.. ..-+|........+.       .....+.+++|..||.+|+.|..||+|.+-
T Consensus        89 k-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~-------kss~R~~~CsWtnDGqylalG~~nGTIsiR  159 (1081)
T KOG1538|consen   89 K-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH-------KSSSRIICCSWTNDGQYLALGMFNGTISIR  159 (1081)
T ss_pred             e-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh-------hhheeEEEeeecCCCcEEEEeccCceEEee
Confidence            2 3699999999999999999998764 467887664432221       123578999999999999999999999997


Q ss_pred             EcCCCceeeeee---CCCCCeEEEEEcCCC-----cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          385 DVKSQANVAKFD---GHVGAVTAISFSENG-----YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       385 d~~~~~~~~~~~---~~~~~i~~l~~s~~g-----~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      +- +++....+.   +.+.+|.+++|+|+.     ..+++...+. +.+|.+. |+.+..-...  .....++.+.++|.
T Consensus       160 Nk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L--~FdP~CisYf~NGE  235 (1081)
T KOG1538|consen  160 NK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRAL--NFDPCCISYFTNGE  235 (1081)
T ss_pred             cC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccC--CCCchhheeccCCc
Confidence            64 444433333   467899999999963     3555555554 6666654 3332211111  34567899999999


Q ss_pred             EEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCccc
Q 010669          456 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       456 ~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~  503 (504)
                      |+..||.|  +++|-     +.+..+.++-..  ...|..++.-|+||..
T Consensus       236 y~LiGGsdk~L~~fT-----R~GvrLGTvg~~--D~WIWtV~~~PNsQ~v  278 (1081)
T KOG1538|consen  236 YILLGGSDKQLSLFT-----RDGVRLGTVGEQ--DSWIWTVQAKPNSQYV  278 (1081)
T ss_pred             EEEEccCCCceEEEe-----ecCeEEeecccc--ceeEEEEEEccCCceE
Confidence            99999998  88886     578888888664  6789999999999864

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.3e-19  Score=158.82  Aligned_cols=241  Identities=20%  Similarity=0.322  Sum_probs=181.0

Q ss_pred             ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeC-CCCCCcceeEEeccCCcCeEEEEEcc--CCCEEEEEeCCCeEEEEE
Q 010669          262 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG-SEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYD  338 (504)
Q Consensus       262 ~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd  338 (504)
                      .+|.+-|+++.|.+.|+.+++|+.|++|+|||. ...+++.+....+.|.+.|..+.|.+  -|+.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            478889999999999999999999999999995 44467888889999999999999965  488999999999999997


Q ss_pred             CCCCe--E--EEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcCCCc------eeeeee-------CCC
Q 010669          339 LSSGI--C--LTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQA------NVAKFD-------GHV  399 (504)
Q Consensus       339 ~~~~~--~--~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg~I~iwd~~~~~------~~~~~~-------~~~  399 (504)
                      -....  .  ..-............|+.+.|.|  -|-.|++++.||.+|||+.-...      ....+.       .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            52110  0  01111111224567899999999  68899999999999999875432      223332       355


Q ss_pred             CCeEEEEEcCC---CcEEEEEeCC------cEEEEEcCCCc--ceeeeecCCCCCCeeEEEECCC----CCEEEEEeCc-
Q 010669          400 GAVTAISFSEN---GYYLATAAHD------GVKLWDLRKLK--NFRSFESSDSETPTNSVDFDHS----GSYLAVASAD-  463 (504)
Q Consensus       400 ~~i~~l~~s~~---g~~l~s~~~d------~v~vwd~~~~~--~~~~~~~~~~~~~v~~i~~~~~----g~~l~~~~~d-  463 (504)
                      .+..|+.|+|.   ..+|+.|+.+      .++||......  ..+.-...++..+|+.++|.|+    -..||+++.| 
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            67899999984   5689999877      48888765432  2222223355889999999995    3578999999 


Q ss_pred             EEEEEeeccC----------------ccceeEEEccCCCCCCceeEEEEeecCcccC
Q 010669          464 IRVYQVASVK----------------ADWNCIKTFPDLSGTGAASFLFLFVLGQTCS  504 (504)
Q Consensus       464 i~vw~~~~~~----------------~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~s  504 (504)
                      |+||.+....                -.-+.+..|.+|  .+.|..+.+.-.|.+.|
T Consensus       250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H--~~~VWrv~wNmtGtiLs  304 (361)
T KOG2445|consen  250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH--NGEVWRVRWNMTGTILS  304 (361)
T ss_pred             EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC--CCceEEEEEeeeeeEEe
Confidence            9999985211                123456778888  88999999988887653

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=2.8e-20  Score=165.97  Aligned_cols=276  Identities=14%  Similarity=0.288  Sum_probs=203.6

Q ss_pred             ccccCCCCCeEEEEecc-----CCCEEEEEeCCCcEEEEcCCCC---ceEEEcc--cCccceeEEEEeeC----CCEEEE
Q 010669          217 PLHKTSKPGIVSLDIHY-----SKDVIATGGVDTNAVLFDRPSG---QIVTTLS--GHSKKVTSVKFVTE----GDLFLT  282 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~-----~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~--~h~~~v~~l~~s~~----~~~l~s  282 (504)
                      .+...|..+|..++|++     +...+++.|. ..+.+|.....   ..+..+.  .|......++|+-+    ..+++.
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            35667888999999985     2236666664 46888886543   3334442  36777888899753    347889


Q ss_pred             EeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeE
Q 010669          283 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT  361 (504)
Q Consensus       283 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  361 (504)
                      ||.-|.|+|.|+..+   ++...+.+|...|+.+.++|+. ++++++|.|..|++|++++..++..+..  ..+|...|.
T Consensus       111 ~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--~egHrdeVL  185 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--VEGHRDEVL  185 (385)
T ss_pred             ecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc--cccccCcEE
Confidence            999999999999886   7888889999999999999965 6899999999999999999999988853  568999999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCce------e-------------------e---eeeCCCCCeEEEEEcCCCcE
Q 010669          362 SAAFHPDGLILGTGTSEALVKIWDVKSQAN------V-------------------A---KFDGHVGAVTAISFSENGYY  413 (504)
Q Consensus       362 ~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~------~-------------------~---~~~~~~~~i~~l~~s~~g~~  413 (504)
                      ++.|+++|.+|++++.|.+|++|++...+.      .                   .   +-..|...|.|+.|  -|.+
T Consensus       186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~  263 (385)
T KOG1034|consen  186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDF  263 (385)
T ss_pred             EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hhhh
Confidence            999999999999999999999999973211      0                   0   11236677777877  4678


Q ss_pred             EEEEeCCc-EEEEEcCCC-c-------------ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccc
Q 010669          414 LATAAHDG-VKLWDLRKL-K-------------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW  476 (504)
Q Consensus       414 l~s~~~d~-v~vwd~~~~-~-------------~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~  476 (504)
                      +++-+-++ |..|..-+. +             .+..++.....-.....+|+|-++.||.|...  +.+||+...... 
T Consensus       264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~-  342 (385)
T KOG1034|consen  264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP-  342 (385)
T ss_pred             eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-
Confidence            88877777 999987221 1             12233333212223445677889999999876  999999553322 


Q ss_pred             eeEEEccCCCCCCceeEEEEeecCcc
Q 010669          477 NCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       477 ~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                       ...++..+.....|...+|+.+|.+
T Consensus       343 -~~ttl~~s~~~~tVRQ~sfS~dgs~  367 (385)
T KOG1034|consen  343 -KCTTLTHSKSGSTVRQTSFSRDGSI  367 (385)
T ss_pred             -cCceEEeccccceeeeeeecccCcE
Confidence             2333333334678999999999865

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=3e-21  Score=197.71  Aligned_cols=244  Identities=19%  Similarity=0.309  Sum_probs=193.5

Q ss_pred             CCCeEEEEeccCCCE----EEEEeCCCcEEEEcCCC---C---ceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEE
Q 010669          223 KPGIVSLDIHYSKDV----IATGGVDTNAVLFDRPS---G---QIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRV  291 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~----l~sg~~dg~i~vwd~~~---~---~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~i  291 (504)
                      ....+.++|.+.|..    |+.|..||.|.+||...   +   ..+.++..|++.|..+.|++. +++|++|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            345678999987764    89999999999999754   2   346677889999999999994 559999999999999


Q ss_pred             EeCCCCCCcceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC-
Q 010669          292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-  369 (504)
Q Consensus       292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg-  369 (504)
                      ||+.......... -....+.|.+++|+.. ...|++++.+|.+.|||++..+.+..+...   .....+..++|||++ 
T Consensus       144 WDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~---~~~~~~S~l~WhP~~a  219 (1049)
T KOG0307|consen  144 WDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT---PGRMHCSVLAWHPDHA  219 (1049)
T ss_pred             eccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC---CCccceeeeeeCCCCc
Confidence            9998743211111 1234578999999864 457888999999999999999887777633   223568899999966 


Q ss_pred             CEEEEEeCCC---cEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCC-cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCC
Q 010669          370 LILGTGTSEA---LVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSET  443 (504)
Q Consensus       370 ~~l~~g~~dg---~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g-~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~  443 (504)
                      ..+++++.|.   .|.+||+|.. .++..+.+|...|.++.|++.+ .+|++++.|+ |.+|+..+++.+..+...  ..
T Consensus       220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~n  297 (1049)
T KOG0307|consen  220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--GN  297 (1049)
T ss_pred             eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--Cc
Confidence            4555555543   6999999864 5788889999999999999965 8999999998 999999999998888764  67


Q ss_pred             CeeEEEECCCCC-EEEEEeCc--EEEEEeecc
Q 010669          444 PTNSVDFDHSGS-YLAVASAD--IRVYQVASV  472 (504)
Q Consensus       444 ~v~~i~~~~~g~-~l~~~~~d--i~vw~~~~~  472 (504)
                      ++..+.|+|... .+++++-|  |.||.+...
T Consensus       298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            999999999876 66666666  999988543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=3e-21  Score=197.73  Aligned_cols=261  Identities=15%  Similarity=0.247  Sum_probs=198.3

Q ss_pred             EEEeccCCC-EEEEE----------eCCCcEEEEcCCC--Cc----eEEEcccCccceeEEEEeeCCCE----EEEEeCC
Q 010669          228 SLDIHYSKD-VIATG----------GVDTNAVLFDRPS--GQ----IVTTLSGHSKKVTSVKFVTEGDL----FLTGSAD  286 (504)
Q Consensus       228 ~~~~s~~~~-~l~sg----------~~dg~i~vwd~~~--~~----~~~~~~~h~~~v~~l~~s~~~~~----l~s~s~d  286 (504)
                      .++|+|.+. ++++|          +.+.++-+|.+..  .+    .+..+. -....+.++|.+.+..    |+.|..|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence            577888876 55554          2345556665432  22    233333 2356789999986664    8888999


Q ss_pred             CcEEEEeCCC---CCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669          287 KTVRVWQGSE---DGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       287 g~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  362 (504)
                      |.|.+||...   +.....+.+...|.+.|..+.|++.. +.+++|+.||.|.|||+.+.+......   .......|.+
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~  166 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKC  166 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceE
Confidence            9999999765   34445667778999999999999965 499999999999999998855444432   2234578999


Q ss_pred             EEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCC--CeEEEEEcCCC-cEEEEEeCC-c---EEEEEcCCCc-ce
Q 010669          363 AAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVG--AVTAISFSENG-YYLATAAHD-G---VKLWDLRKLK-NF  433 (504)
Q Consensus       363 ~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~g-~~l~s~~~d-~---v~vwd~~~~~-~~  433 (504)
                      ++|+. ..++|++++.+|.+.|||+|..+++..+..+.+  .+..+.|+|++ ..|+++++| +   |.+||+|... .+
T Consensus       167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~  246 (1049)
T KOG0307|consen  167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL  246 (1049)
T ss_pred             eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence            99998 667899999999999999999988888876544  57889999975 445555544 3   9999999754 45


Q ss_pred             eeeecCCCCCCeeEEEECCCC-CEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          434 RSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       434 ~~~~~~~~~~~v~~i~~~~~g-~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      +.+..|  ...|.++.|++.+ .+|++++.|  +.+|+.    ++++.+..+..-  .+.+..+.|+|..
T Consensus       247 k~~~~H--~~GilslsWc~~D~~lllSsgkD~~ii~wN~----~tgEvl~~~p~~--~nW~fdv~w~pr~  308 (1049)
T KOG0307|consen  247 KILEGH--QRGILSLSWCPQDPRLLLSSGKDNRIICWNP----NTGEVLGELPAQ--GNWCFDVQWCPRN  308 (1049)
T ss_pred             hhhccc--ccceeeeccCCCCchhhhcccCCCCeeEecC----CCceEeeecCCC--CcceeeeeecCCC
Confidence            556555  7899999999977 888899988  888987    778899999874  6788888888754

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.8e-19  Score=173.58  Aligned_cols=241  Identities=17%  Similarity=0.203  Sum_probs=191.1

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ++.+....|.+++|+ ++..|++.+.+|.|.-||+.+++....+....+.|++++.+|.+..++.|+.||.+..++...+
T Consensus        64 i~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~  142 (691)
T KOG2048|consen   64 IHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD  142 (691)
T ss_pred             EecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence            455556789999999 5667788888999999999999999999999999999999999999999999997777776653


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeec--CCCC-CCCCCeEEEEECCCCCEEEE
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD--AGTD-GRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~-~~~~~v~~~~~~pdg~~l~~  374 (504)
                       .......+.-..++|.+++|+|++..+++|+.||.|++||..++........  .... ....-|.++.|-.++ .|++
T Consensus       143 -~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~s  220 (691)
T KOG2048|consen  143 -KITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIAS  220 (691)
T ss_pred             -eEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEE
Confidence             2333444555678999999999999999999999999999999987773321  1111 133457778877555 6899


Q ss_pred             EeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc--eeeeecCCCCCCeeEEEEC
Q 010669          375 GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN--FRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~--~~~~~~~~~~~~v~~i~~~  451 (504)
                      |.+.|+|.+||...+..+..+..|.+.|.+++..+++.++++++.|+ |..|...+.+.  +.......|...+.+++..
T Consensus       221 gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~  300 (691)
T KOG2048|consen  221 GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVI  300 (691)
T ss_pred             ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeee
Confidence            99999999999999999999999999999999999999999999998 76676655433  1111112235578888777


Q ss_pred             CCCCEEEEEeCc
Q 010669          452 HSGSYLAVASAD  463 (504)
Q Consensus       452 ~~g~~l~~~~~d  463 (504)
                      ++  .+++||.|
T Consensus       301 ~~--~l~sgG~d  310 (691)
T KOG2048|consen  301 EN--ALISGGRD  310 (691)
T ss_pred             cc--eEEeccee
Confidence            65  77777777

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=1.5e-19  Score=165.64  Aligned_cols=159  Identities=19%  Similarity=0.374  Sum_probs=128.8

Q ss_pred             CCCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCC---------ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669          223 KPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSG---------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW  292 (504)
Q Consensus       223 ~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iw  292 (504)
                      ..+|.++.|.+++. .+++|+.|..|++|.+..+         +....+..|...|+++.|+|+|++|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            56899999999776 9999999999999986532         2345677899999999999999999999999999999


Q ss_pred             eCC--------C-----CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669          293 QGS--------E-----DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG  359 (504)
Q Consensus       293 d~~--------~-----~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  359 (504)
                      -..        +     ...+.....+.+|...|..++|+|++.++++++.|..+++||+..|+....+.     .|...
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-----dh~~y  167 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-----DHEHY  167 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-----ccccc
Confidence            765        2     22356667788999999999999999999999999999999999998877765     55556


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEc
Q 010669          360 YTSAAFHPDGLILGTGTSEALVKIWDV  386 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~~dg~I~iwd~  386 (504)
                      +..++|.|-++++++-+.|...+.+++
T Consensus       168 vqgvawDpl~qyv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  168 VQGVAWDPLNQYVASKSSDRHPEGFSA  194 (434)
T ss_pred             cceeecchhhhhhhhhccCcccceeee
Confidence            666666666666666555554444443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2.5e-20  Score=172.51  Aligned_cols=208  Identities=19%  Similarity=0.347  Sum_probs=166.2

Q ss_pred             ccCCCCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCC
Q 010669          219 HKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ..+|.+.|.++.|+..- +.||+||.|.+|++||+.++++..++..|.+.|.++.|+| ...+|++|+.|++|.+.|.+.
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            34688889999998764 5899999999999999999999999999999999999998 567899999999999999985


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCCCCCCeEEEEECC-CCCEEE
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHP-DGLILG  373 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~  373 (504)
                      ........   ...+.|-.++|+|.. ..+++++.||+++-+|+|.. +++..+.     .|..+|.++++++ ...+++
T Consensus       319 ~~~s~~~w---k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-----AHd~~ISgl~~n~~~p~~l~  390 (463)
T KOG0270|consen  319 PSNSGKEW---KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-----AHDDEISGLSVNIQTPGLLS  390 (463)
T ss_pred             ccccCceE---EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE-----eccCCcceEEecCCCCccee
Confidence            32212222   235779999999854 57888889999999999986 6677665     7889999999999 556889


Q ss_pred             EEeCCCcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCC-cEEEEEeCCc-EEEEEcCCCccee
Q 010669          374 TGTSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFR  434 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g-~~l~s~~~d~-v~vwd~~~~~~~~  434 (504)
                      +++.|+.|++|++....+  +..-.-.-+...|.++.|+- .+|+.|+..+ ++|||+.+...+.
T Consensus       391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            999999999999865433  22111122346777888864 5677788777 9999998876544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2.7e-20  Score=177.24  Aligned_cols=257  Identities=18%  Similarity=0.220  Sum_probs=195.6

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC--------CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEE
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS--------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR  290 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~--------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~  290 (504)
                      ...|.+.|.++.|++....|++++.||++.+|++..        -+.+.+|.+|.++|.|+++.+++..+++|+.||+|+
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~  369 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIR  369 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceee
Confidence            456788999999999999999999999999999932        256788999999999999999999999999999999


Q ss_pred             EEeCCCCCC-------cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEE
Q 010669          291 VWQGSEDGN-------YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA  363 (504)
Q Consensus       291 iwd~~~~~~-------~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  363 (504)
                      .|++.....       ......+.||.+.|+.+++|+....|++++.||+++.|+...... ..+...   .......++
T Consensus       370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~---~e~g~Plsv  445 (577)
T KOG0642|consen  370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP---KEHGYPLSV  445 (577)
T ss_pred             eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc---cccCCcceE
Confidence            997653211       133456779999999999999999999999999999999876655 222211   111234555


Q ss_pred             EECCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeCC-------CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCccee
Q 010669          364 AFHPDG-LILGTGTSEALVKIWDVKSQANVAKFDGH-------VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR  434 (504)
Q Consensus       364 ~~~pdg-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~  434 (504)
                      ++-... .+.++....+.-.++|+.....+..+...       ...+..+.++|++.+.+++..+. |+++|..++..+.
T Consensus       446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~  525 (577)
T KOG0642|consen  446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH  525 (577)
T ss_pred             eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence            554432 23333333344444555544444444321       13577889999999999999998 9999999999988


Q ss_pred             eeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCC
Q 010669          435 SFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       435 ~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                      ....+  ...++++++.|+|.+|++++.|  +++|.+    ....++.....|
T Consensus       526 s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kl----d~k~~~~es~~~  572 (577)
T KOG0642|consen  526 SMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKL----DVKTCVLESTAH  572 (577)
T ss_pred             heeec--cceecceeecCCCceEEeecCCceeehhhc----cchheeeccccc
Confidence            88776  6789999999999999999999  999998    444555555444

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.84  E-value=5.4e-20  Score=170.85  Aligned_cols=216  Identities=22%  Similarity=0.333  Sum_probs=170.2

Q ss_pred             cCCCCceEEEcccCccceeEEEEeeCC--CEEEEEeCCCcEEEEeCCCC-CCcceeEEeccCCcCeEEEEEccCC-CEEE
Q 010669          251 DRPSGQIVTTLSGHSKKVTSVKFVTEG--DLFLTGSADKTVRVWQGSED-GNYDCKHTLKDHTAEVQAVTVHATN-KYFV  326 (504)
Q Consensus       251 d~~~~~~~~~~~~h~~~v~~l~~s~~~--~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~  326 (504)
                      |+.+......++-+.+.|++++|+|..  +++++|..-|+|-+||+.+. ....-+..+..|..+|.++.|+|.+ ..++
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence            333344445566688999999999944  57889999999999999532 2234556677899999999999954 6899


Q ss_pred             EEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce-eeeeeCCCCCeEEE
Q 010669          327 TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN-VAKFDGHVGAVTAI  405 (504)
Q Consensus       327 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~-~~~~~~~~~~i~~l  405 (504)
                      +.|.||+|++-|++++..-..+..   +.....+..+.|+.+...++.|..=|...+||+|++.. ...+.-|...|++|
T Consensus       252 ssSyDGtiR~~D~~~~i~e~v~s~---~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv  328 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNISEEVLSL---DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV  328 (498)
T ss_pred             eeccCceeeeeeecchhhHHHhhc---CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence            999999999999987754333331   12345678899999888888888778999999998765 55566788899999


Q ss_pred             EEcCC-CcEEEEEeCCc-EEEEEcCCCcceee--eecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          406 SFSEN-GYYLATAAHDG-VKLWDLRKLKNFRS--FESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       406 ~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~~--~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      +++|- ..+|++++.|+ ++|||+|....-..  +....|...|.+..|+|+|..|++.+.|  |+|||.
T Consensus       329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             ecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            99994 67889999998 99999998655443  4445567899999999998888888888  999997

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.6e-19  Score=158.92  Aligned_cols=257  Identities=13%  Similarity=0.185  Sum_probs=192.1

Q ss_pred             eeccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEe
Q 010669          215 SHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       215 ~~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd  293 (504)
                      ...+..+|--+|++++||++|+.|++++.|..|.+||+..|.++..+. ...+|+.+.|+|. .+.+++.-.+..-.+-+
T Consensus        57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~  135 (405)
T KOG1273|consen   57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVID  135 (405)
T ss_pred             hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEE
Confidence            334678899999999999999999999999999999999999888887 6788999999994 34444444444444555


Q ss_pred             CCCCCCcceeEEec--cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669          294 GSEDGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI  371 (504)
Q Consensus       294 ~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~  371 (504)
                      +.... ..++..-.  .-+....+..|++.|+++++|...|.+.++|..+.+++..++...    ...|..+.++..|..
T Consensus       136 ~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits----~~~IK~I~~s~~g~~  210 (405)
T KOG1273|consen  136 FSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS----VQAIKQIIVSRKGRF  210 (405)
T ss_pred             ecCCc-eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech----heeeeEEEEeccCcE
Confidence            44311 01110000  011122334688999999999999999999999999988876321    357899999999999


Q ss_pred             EEEEeCCCcEEEEEcCCC-------c--eeeeeeC--CCCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCcceeeeec
Q 010669          372 LGTGTSEALVKIWDVKSQ-------A--NVAKFDG--HVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       372 l~~g~~dg~I~iwd~~~~-------~--~~~~~~~--~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~~~~~~~~  438 (504)
                      |+..+.|..||.|+++.-       +  +.+.+..  ....-.+++|+.+|.|+++++...  ++||.-..|..++.+.+
T Consensus       211 liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG  290 (405)
T KOG1273|consen  211 LIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG  290 (405)
T ss_pred             EEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence            999999999999998621       1  1122211  123456789999999999998774  99999999999998887


Q ss_pred             CCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeE
Q 010669          439 SDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCI  479 (504)
Q Consensus       439 ~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i  479 (504)
                      .. +.....+.|+|-...+++...+ ++||..... .+|...
T Consensus       291 ~k-gE~l~DV~whp~rp~i~si~sg~v~iw~~~~~-enwsaf  330 (405)
T KOG1273|consen  291 TK-GEELLDVNWHPVRPIIASIASGVVYIWAVVQV-ENWSAF  330 (405)
T ss_pred             Cc-hhheeecccccceeeeeeccCCceEEEEeecc-cchhhc
Confidence            64 3567889999999999988777 999987442 345443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=6.6e-19  Score=156.56  Aligned_cols=239  Identities=12%  Similarity=0.190  Sum_probs=178.5

Q ss_pred             CeEEEEeccCCCEE-EEEeCCCcEEEEcCCC---CceEE---------EcccCccceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669          225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPS---GQIVT---------TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV  291 (504)
Q Consensus       225 ~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~---~~~~~---------~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~i  291 (504)
                      .-+.+.|+||-+-+ ++.-...++++|.+..   |....         .-+.|.-.|-.+-...++.+|++++.|..|.+
T Consensus       134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l  213 (420)
T KOG2096|consen  134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL  213 (420)
T ss_pred             CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence            46889999998744 4444556799997532   22111         11235555666666667889999999999999


Q ss_pred             EeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECC---CCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669          292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS---SGICLTQVSDAGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~v~~~~~~pd  368 (504)
                      |++..    +.+..+......-+..+.+|+|+++++++..-.|++|.+-   .|..........+.+|...|..++|+++
T Consensus       214 w~lkG----q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~  289 (420)
T KOG2096|consen  214 WDLKG----QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS  289 (420)
T ss_pred             EecCC----ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence            99984    5666666556667788899999999999999999999863   2222111112235699999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCC-------Cceeeeee----CCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeee
Q 010669          369 GLILGTGTSEALVKIWDVKS-------QANVAKFD----GHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFE  437 (504)
Q Consensus       369 g~~l~~g~~dg~I~iwd~~~-------~~~~~~~~----~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~  437 (504)
                      ...+++.+.||.++|||+.-       .+.+.++.    .-.+....+.++|+|..|+.+....+++|..++++....+.
T Consensus       290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e  369 (420)
T KOG2096|consen  290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE  369 (420)
T ss_pred             cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH
Confidence            99999999999999999742       12222221    12234458999999999998877779999999988776665


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCc-EEEEE
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASAD-IRVYQ  468 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~  468 (504)
                      .. |...|.+++|+++|+|++++|+. ++++.
T Consensus       370 ~~-h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  370 DI-HSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             Hh-hcCceeeEEecCCCcEEeeecceeeeeec
Confidence            42 36789999999999999999988 88876

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=2.5e-19  Score=159.52  Aligned_cols=238  Identities=21%  Similarity=0.335  Sum_probs=185.6

Q ss_pred             CCCeEEEEec-------cCCCEEEEEeCCCcEEEEcCCCCceEEEccc--Ccc---ceeEEEEeeCCCEEEEEeCCCcEE
Q 010669          223 KPGIVSLDIH-------YSKDVIATGGVDTNAVLFDRPSGQIVTTLSG--HSK---KVTSVKFVTEGDLFLTGSADKTVR  290 (504)
Q Consensus       223 ~~~I~~~~~s-------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~---~v~~l~~s~~~~~l~s~s~dg~i~  290 (504)
                      ...|...+|-       |+.+++++.+.+.-|++||..+|+....+.+  |..   ...+++|+|||..|++| ...+|+
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir  182 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR  182 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence            3457777775       6778999999999999999999998887763  433   34689999999998875 557999


Q ss_pred             EEeCCCCCCcceeEEec-----cCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEE
Q 010669          291 VWQGSEDGNYDCKHTLK-----DHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA  364 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  364 (504)
                      ++|+...+.........     +..+.|.+++|+|.. ..+++|+....+-||.-..+.+...+.     +|.+.|+.++
T Consensus       183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-----gh~gGvThL~  257 (406)
T KOG2919|consen  183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-----GHGGGVTHLQ  257 (406)
T ss_pred             EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-----ccCCCeeeEE
Confidence            99995544322332222     336789999999954 589999999999999888888777765     7889999999


Q ss_pred             ECCCCCEEEEEeC-CCcEEEEEcCCC-ceeeeeeCCCC-CeEEEEE--cCCCcEEEEEeCCc-EEEEEcCC-Ccceeeee
Q 010669          365 FHPDGLILGTGTS-EALVKIWDVKSQ-ANVAKFDGHVG-AVTAISF--SENGYYLATAAHDG-VKLWDLRK-LKNFRSFE  437 (504)
Q Consensus       365 ~~pdg~~l~~g~~-dg~I~iwd~~~~-~~~~~~~~~~~-~i~~l~~--s~~g~~l~s~~~d~-v~vwd~~~-~~~~~~~~  437 (504)
                      |+++|+.|++|.. |..|..||+|.. .++..+..|.+ .-..|.|  .|.|.+|++|+.+| |++||+.+ +..+..+.
T Consensus       258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~  337 (406)
T KOG2919|consen  258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG  337 (406)
T ss_pred             eccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence            9999999999875 678999999864 56777777765 3334544  57899999999999 99999998 55455555


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASADIRVYQV  469 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~  469 (504)
                      .+  ...++.++++|--.++++++.. ++|..
T Consensus       338 ~~--sd~vNgvslnP~mpilatssGq-r~f~~  366 (406)
T KOG2919|consen  338 NY--SDTVNGVSLNPIMPILATSSGQ-RIFKY  366 (406)
T ss_pred             cc--cccccceecCcccceeeeccCc-eeecC
Confidence            44  5689999999998888888766 44544

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.84  E-value=3.3e-19  Score=173.36  Aligned_cols=278  Identities=21%  Similarity=0.311  Sum_probs=208.6

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW  292 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iw  292 (504)
                      +.-.+|.++|..++|+|.|++|++.|.|-+-++|-.-..    -.+..-+-|.-.++|++|-+....+++|.....+|+|
T Consensus       355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF  434 (764)
T KOG1063|consen  355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVF  434 (764)
T ss_pred             cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeee
Confidence            356789999999999999999999999999999865411    1233345688889999998866678999999999999


Q ss_pred             eCCC-------------------------------------------CCC------------------------------
Q 010669          293 QGSE-------------------------------------------DGN------------------------------  299 (504)
Q Consensus       293 d~~~-------------------------------------------~~~------------------------------  299 (504)
                      +...                                           ++.                              
T Consensus       435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL  514 (764)
T KOG1063|consen  435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL  514 (764)
T ss_pred             cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence            7110                                           000                              


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCEEEEEeCCC-----eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      +..++.+.+|.-.|.+++.+|+++++++++...     .|++|+..+......+.     +|.-.|+.++|+|||++|++
T Consensus       515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-----~HsLTVT~l~FSpdg~~LLs  589 (764)
T KOG1063|consen  515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-----GHSLTVTRLAFSPDGRYLLS  589 (764)
T ss_pred             chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-----ccceEEEEEEECCCCcEEEE
Confidence            112334668999999999999999999998754     58999998877776554     78889999999999999999


Q ss_pred             EeCCCcEEEEEcCCCce----eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC--cceeeeecCCCCCCeeE
Q 010669          375 GTSEALVKIWDVKSQAN----VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KNFRSFESSDSETPTNS  447 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~--~~~~~~~~~~~~~~v~~  447 (504)
                      .+.|.++.+|.......    ....+.|..-|.+..|+|++.++++++.|. |++|.....  +.+..+........|+.
T Consensus       590 vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA  669 (764)
T KOG1063|consen  590 VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA  669 (764)
T ss_pred             eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence            99999999999854321    223567999999999999999999999998 999999887  55555545555788999


Q ss_pred             EEECCC----CC-EEEEEeCc--EEEEEeecc-----CccceeEEEccCC-CCCCceeEEEEeec
Q 010669          448 VDFDHS----GS-YLAVASAD--IRVYQVASV-----KADWNCIKTFPDL-SGTGAASFLFLFVL  499 (504)
Q Consensus       448 i~~~~~----g~-~l~~~~~d--i~vw~~~~~-----~~~~~~i~~~~~h-~~~~~v~~l~~~~~  499 (504)
                      ++|.|-    .. .+++|-..  |.+|.....     ..++.....+..+ .+.+.|.-+.+.|.
T Consensus       670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~  734 (764)
T KOG1063|consen  670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT  734 (764)
T ss_pred             EEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence            999772    23 45555554  888886411     1123333333322 12567777777765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=3.8e-17  Score=163.61  Aligned_cols=262  Identities=27%  Similarity=0.523  Sum_probs=209.9

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc-eEEEcccCcc-ceeEEEE-eeCCC-EEEEEeC-CCcEEEEe
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-IVTTLSGHSK-KVTSVKF-VTEGD-LFLTGSA-DKTVRVWQ  293 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~-~v~~l~~-s~~~~-~l~s~s~-dg~i~iwd  293 (504)
                      ...|...+.++.+.+.+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. .++..+. |+.+.+|+
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  140 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD  140 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence            45678899999999999999999999999999998876 6677766443 7777777 77777 5555444 99999999


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC-E
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-I  371 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~-~  371 (504)
                      ....  ......+..|...|..+.|+|++.++++++. |+.+++|++..+.....+.     +|...+.+++|+|++. +
T Consensus       141 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~  213 (466)
T COG2319         141 LSTP--GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-----GHTDPVSSLAFSPDGGLL  213 (466)
T ss_pred             ecCC--CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-----cCCCceEEEEEcCCcceE
Confidence            9861  1566777899999999999999998888886 9999999999877776665     4778999999999998 5


Q ss_pred             EEEEeCCCcEEEEEcCCCceee-eeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc-eeeeecCCCCCCeeEE
Q 010669          372 LGTGTSEALVKIWDVKSQANVA-KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTNSV  448 (504)
Q Consensus       372 l~~g~~dg~I~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~-~~~~~~~~~~~~v~~i  448 (504)
                      +++++.|+.|++||...+..+. .+.+|.... ...|++++.++++++.++ +++||++.... ...+  ..+...+.++
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~  290 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSV  290 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccEEEE
Confidence            5555899999999998777777 688887775 448999998888888898 99999987665 4444  2336789999


Q ss_pred             EECCCCCEEEEEeCc--EEEEEeeccCccceeEEEcc--CCCCCCceeEEEE
Q 010669          449 DFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP--DLSGTGAASFLFL  496 (504)
Q Consensus       449 ~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~--~h~~~~~v~~l~~  496 (504)
                      .|+|++..+++++.|  +.+|+.    ..........  .|  .+.+..+.+
T Consensus       291 ~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~  336 (466)
T COG2319         291 AFSPDGKLLASGSSDGTVRLWDL----ETGKLLSSLTLKGH--EGPVSSLSF  336 (466)
T ss_pred             EECCCCCEEEEeeCCCcEEEEEc----CCCceEEEeeeccc--CCceEEEEE
Confidence            999999998888888  899977    3344444433  66  556777777

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=5.7e-19  Score=158.54  Aligned_cols=255  Identities=16%  Similarity=0.265  Sum_probs=182.5

Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee--CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCC-cC
Q 010669          236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT-AE  312 (504)
Q Consensus       236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~  312 (504)
                      ..+|++..+|.|++||..+++.+..++++...++.+.|..  .+..+.+|+.||+|++||++.... .....+..+. .+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-~a~~~~~~~~~~~  119 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-SARISWTQQSGTP  119 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-hhheeccCCCCCc
Confidence            5788888999999999999999999999999999999987  456799999999999999988543 2333344554 45


Q ss_pred             eEEEEEccCCCEEEEEeC----CCeEEEEECCCCeE-EEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEc
Q 010669          313 VQAVTVHATNKYFVTASL----DNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDV  386 (504)
Q Consensus       313 v~~l~~~p~~~~l~s~s~----dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~  386 (504)
                      ..+++.+-.++.+++|+.    |-.+.+||++..+. +..+.    ..|...|+++.||| +.++|++|+.||.|.+||+
T Consensus       120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~----eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN----ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh----hhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            677777767788888764    67899999998876 44443    37888999999999 7789999999999999999


Q ss_pred             CCCc---eeeeeeCCCCCeEEEEEcCCCc-EEEEEeCC-cEEEEEcCCCcceeeeecCCC----------CCCeeEEEEC
Q 010669          387 KSQA---NVAKFDGHVGAVTAISFSENGY-YLATAAHD-GVKLWDLRKLKNFRSFESSDS----------ETPTNSVDFD  451 (504)
Q Consensus       387 ~~~~---~~~~~~~~~~~i~~l~~s~~g~-~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~----------~~~v~~i~~~  451 (504)
                      +...   .+...-.|...|.++.|..+++ .|.+-+.. +..+|++..+.+...+..+..          ...+......
T Consensus       196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~  275 (376)
T KOG1188|consen  196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSP  275 (376)
T ss_pred             CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccC
Confidence            7642   2222334777899999999882 34444555 499999998876555544321          1112222222


Q ss_pred             CCCCEEEEEeCc---EEEEEee--ccCccceeEEEccCCCCCCceeEEEE
Q 010669          452 HSGSYLAVASAD---IRVYQVA--SVKADWNCIKTFPDLSGTGAASFLFL  496 (504)
Q Consensus       452 ~~g~~l~~~~~d---i~vw~~~--~~~~~~~~i~~~~~h~~~~~v~~l~~  496 (504)
                      .++..++.++.+   +.++-+.  ......+.+..+.+| +...|.++.|
T Consensus       276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~  324 (376)
T KOG1188|consen  276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILF  324 (376)
T ss_pred             CCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhh
Confidence            345566666554   6666553  333456667777774 2444544433

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7.7e-18  Score=144.50  Aligned_cols=229  Identities=19%  Similarity=0.309  Sum_probs=175.3

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCC---------C-ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPS---------G-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~---------~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      |.+-+|+|.+++|++|..+|.|.++.+.+         + ..+-..++|.++|+.++|.  ..+|++|+. |.|+-|...
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~   89 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWN   89 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeeh
Confidence            55667899999999999999999998753         1 2345568999999999997  456777654 999999765


Q ss_pred             CCCC-------cceeEEe---ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEE
Q 010669          296 EDGN-------YDCKHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF  365 (504)
Q Consensus       296 ~~~~-------~~~~~~~---~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  365 (504)
                      ....       ++.....   ...-..|+++...|..+-++.++.|+.++-||+++|+....+.     +|...+.++.-
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-----GHtDYvH~vv~  164 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-----GHTDYVHSVVG  164 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-----CCcceeeeeee
Confidence            4321       1111001   1122468999999988888888899999999999999988887     88899999998


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC---------CC-CCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceee
Q 010669          366 HPDGLILGTGTSEALVKIWDVKSQANVAKFDG---------HV-GAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRS  435 (504)
Q Consensus       366 ~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~---------~~-~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~  435 (504)
                      -.....+++|++||++|+||.++++.+..+..         |. ..|.+++.  +..+|++|+.-.+.+|.++..++...
T Consensus       165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~v  242 (325)
T KOG0649|consen  165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCV  242 (325)
T ss_pred             cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEE
Confidence            66556789999999999999999998877643         22 24666665  66799988877799999999999988


Q ss_pred             eecCCCCCCeeEEEECCCCCEEEEEe-Cc-EEEEEe
Q 010669          436 FESSDSETPTNSVDFDHSGSYLAVAS-AD-IRVYQV  469 (504)
Q Consensus       436 ~~~~~~~~~v~~i~~~~~g~~l~~~~-~d-i~vw~~  469 (504)
                      +..+   ..+..+.|..+  .+++++ .+ +.-|.+
T Consensus       243 fpip---a~v~~v~F~~d--~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  243 FPIP---ARVHLVDFVDD--CVLIGGEGNHVQSYTL  273 (325)
T ss_pred             Eecc---cceeEeeeecc--eEEEeccccceeeeee
Confidence            8875   56888888643  344444 33 888876

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=4e-20  Score=171.95  Aligned_cols=258  Identities=20%  Similarity=0.316  Sum_probs=209.9

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      +-+.+.++.+|+.|+.|+..|.|-.+|..++++...+.. ...|.++.|..+.++++++-. .-+.|||-..    ..++
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~G----tElH  204 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK-KYVYVYDNNG----TELH  204 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh-ceEEEecCCC----cEEe
Confidence            346789999999999999999999999999999888773 466999999988887777654 5799998654    4555


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW  384 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iw  384 (504)
                      -++.| ..|..+.|.|.--+|++++..|.++.-|+.+|+.+..+.     ...+.+..++-+|-...+-+|..+|+|.+|
T Consensus       205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-----t~~G~~~vm~qNP~NaVih~GhsnGtVSlW  278 (545)
T KOG1272|consen  205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-----TGAGRTDVMKQNPYNAVIHLGHSNGTVSLW  278 (545)
T ss_pred             ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-----ccCCccchhhcCCccceEEEcCCCceEEec
Confidence            55555 568999999988899999999999999999999988876     234578889999999999999999999999


Q ss_pred             EcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       385 d~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      ...+.+++..+-.|.++|.+|++.++|+|+++.+.|. ++|||+|+...+.++..   ..+...++||..|-+.++-|..
T Consensus       279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~a~~ls~SqkglLA~~~G~~  355 (545)
T KOG1272|consen  279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHPASNLSLSQKGLLALSYGDH  355 (545)
T ss_pred             CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCCccccccccccceeeecCCe
Confidence            9999999999999999999999999999999999998 99999999887777765   2467788888776544444444


Q ss_pred             EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          464 IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       464 i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      +.||.=... .++..-..+-.|.-.+.|..+.|+|
T Consensus       356 v~iw~d~~~-~s~~~~~pYm~H~~~~~V~~l~FcP  389 (545)
T KOG1272|consen  356 VQIWKDALK-GSGHGETPYMNHRCGGPVEDLRFCP  389 (545)
T ss_pred             eeeehhhhc-CCCCCCcchhhhccCcccccceecc
Confidence            999953211 1223344455665567888888886

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=1.9e-18  Score=157.82  Aligned_cols=230  Identities=20%  Similarity=0.340  Sum_probs=176.0

Q ss_pred             eccccCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCCCC-------ceEEEcccCccceeEEEEeeC-CCEEEEEeCC
Q 010669          216 HPLHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTE-GDLFLTGSAD  286 (504)
Q Consensus       216 ~~~~~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~d  286 (504)
                      +++..+|+.+|..++|+|- ...||+||.|.+|.||.+..+       +.+..+.+|...|.-++|+|. .+.|++++.|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            4678899999999999994 568999999999999998754       446778899999999999995 4579999999


Q ss_pred             CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEEC
Q 010669          287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH  366 (504)
Q Consensus       287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  366 (504)
                      .+|.+||+.++   ....++. |.+.|+++.|+.+|.+|++.+.|+.|+|||.++++.+..-..  ..+  ..-..+.|-
T Consensus       154 n~v~iWnv~tg---eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~--heG--~k~~Raifl  225 (472)
T KOG0303|consen  154 NTVSIWNVGTG---EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA--HEG--AKPARAIFL  225 (472)
T ss_pred             ceEEEEeccCC---ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc--ccC--CCcceeEEe
Confidence            99999999987   4555565 999999999999999999999999999999999988776532  112  234566788


Q ss_pred             CCCCEEEEEe---CCCcEEEEEcCCCce---eeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCccee-eee
Q 010669          367 PDGLILGTGT---SEALVKIWDVKSQAN---VAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFR-SFE  437 (504)
Q Consensus       367 pdg~~l~~g~---~dg~I~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~-~~~  437 (504)
                      .+|.++-+|.   ++..+-+||..+-+.   ...+.. .+.|.---|.++...++.++.+ + |+.|.+....+.. -+.
T Consensus       226 ~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln  304 (472)
T KOG0303|consen  226 ASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLN  304 (472)
T ss_pred             ccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEec
Confidence            8888666664   467899999866432   334443 3456666688888877766654 5 9999998765432 222


Q ss_pred             cCCCCCCeeEEEECCCC
Q 010669          438 SSDSETPTNSVDFDHSG  454 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g  454 (504)
                      ......+-..+.|-|..
T Consensus       305 ~f~S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  305 TFSSKEPQRGMGFMPKR  321 (472)
T ss_pred             ccccCCccccccccccc
Confidence            22224455667777654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.82  E-value=4.2e-18  Score=151.78  Aligned_cols=235  Identities=19%  Similarity=0.226  Sum_probs=188.9

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC---ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      ..+|+|.+|++|+..+|++-.+..|.||.....   +...+++.|...|+++.|+|..+.|++|+.|..-.||....++.
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            468999999999999999999999999987655   46788999999999999999999999999999999999977788


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA  379 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg  379 (504)
                      ++....+..++..++++.|+|.++.|++||....|.+|-++..+....-+.. ...+.+.|++++|||++-+|++|+.|+
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhi-kkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHI-KKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhh-CCccccceeeeeccCCcceecccccCc
Confidence            8888888899999999999999999999999999999988765543222111 124567899999999999999999999


Q ss_pred             cEEEEEcC-----C-------------CceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc-ceeeeecC
Q 010669          380 LVKIWDVK-----S-------------QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK-NFRSFESS  439 (504)
Q Consensus       380 ~I~iwd~~-----~-------------~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~-~~~~~~~~  439 (504)
                      ..+||..-     .             |+.+.++....+.|..+.|+|+|..|+-.+.|+ +.+-|..... .+......
T Consensus       169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~  248 (361)
T KOG1523|consen  169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA  248 (361)
T ss_pred             ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence            99999741     1             122344444567899999999999999999998 8888876554 23333332


Q ss_pred             CCCCCeeEEEECCCCCEEEEE
Q 010669          440 DSETPTNSVDFDHSGSYLAVA  460 (504)
Q Consensus       440 ~~~~~v~~i~~~~~g~~l~~~  460 (504)
                        ..+..++.|-.+...+++|
T Consensus       249 --~lP~ls~~~ise~~vv~ag  267 (361)
T KOG1523|consen  249 --QLPLLSVSWISENSVVAAG  267 (361)
T ss_pred             --cCCceeeEeecCCceeecC
Confidence              3567777776554444433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=5.3e-17  Score=158.12  Aligned_cols=265  Identities=15%  Similarity=0.202  Sum_probs=174.7

Q ss_pred             CCeEEEEeccCCCEEEEEe-CCCcEEEEcCC-CCce--EEEcccCccceeEEEEeeCCCEEEEEeC-CCcEEEEeCCCCC
Q 010669          224 PGIVSLDIHYSKDVIATGG-VDTNAVLFDRP-SGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSEDG  298 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~-~dg~i~vwd~~-~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg~i~iwd~~~~~  298 (504)
                      +....++++|++++|++++ .++.|.+|++. ++..  +.... ..+....++|+|+++++++++. ++.|.+|++...+
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            4566789999999887664 57889999986 3432  22222 2335678999999998887764 8899999997533


Q ss_pred             Cc-ceeEEeccCCcCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCeEEEEee-cCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          299 NY-DCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVS-DAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       299 ~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      .. .....+. +.....+++++|+++++++++ .++.|.+||+.+...+.... .............+.|+|+|++++++
T Consensus       114 ~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~  192 (330)
T PRK11028        114 IPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV  192 (330)
T ss_pred             CCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence            21 2223232 234467889999999886655 56899999998743221100 00000112346789999999999888


Q ss_pred             eC-CCcEEEEEcCC--Cc--eeeeeeCC------CCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcc----eeeeec
Q 010669          376 TS-EALVKIWDVKS--QA--NVAKFDGH------VGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKN----FRSFES  438 (504)
Q Consensus       376 ~~-dg~I~iwd~~~--~~--~~~~~~~~------~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~----~~~~~~  438 (504)
                      +. ++.|.+||+..  ++  .+..+..+      ......+.|+|+|++|+++... + |.+|++.....    +..+..
T Consensus       193 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~  272 (330)
T PRK11028        193 NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT  272 (330)
T ss_pred             ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec
Confidence            76 89999999973  22  23333221      1123468999999999998654 4 99999865332    222222


Q ss_pred             CCCCCCeeEEEECCCCCEEEEEeC-c--EEEEEeeccCccceeEEEccCCCCCCceeEEEE
Q 010669          439 SDSETPTNSVDFDHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFL  496 (504)
Q Consensus       439 ~~~~~~v~~i~~~~~g~~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~  496 (504)
                         ......+.|+|+|++|++++. +  |.+|+++........+..+..   .....++.|
T Consensus       273 ---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~---g~~P~~~~~  327 (330)
T PRK11028        273 ---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV---GQGPMWVSV  327 (330)
T ss_pred             ---cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc---CCCceEEEE
Confidence               234568999999999998875 3  999998654444555665543   334566665

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=2.4e-18  Score=151.09  Aligned_cols=250  Identities=19%  Similarity=0.327  Sum_probs=181.0

Q ss_pred             CCCcEEEEcCCCC--ce-EEEcccCccceeEEEEee-CCCEEEEEeCC-------CcEEEEeCCCCCC------cceeEE
Q 010669          243 VDTNAVLFDRPSG--QI-VTTLSGHSKKVTSVKFVT-EGDLFLTGSAD-------KTVRVWQGSEDGN------YDCKHT  305 (504)
Q Consensus       243 ~dg~i~vwd~~~~--~~-~~~~~~h~~~v~~l~~s~-~~~~l~s~s~d-------g~i~iwd~~~~~~------~~~~~~  305 (504)
                      .|+.|.+.++..+  .+ -..|..|.+.|+.++-+| +...|+++..+       -.+.||.+...-.      +.++..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            3566777665443  22 234567889999999999 45556665432       2467999875421      233444


Q ss_pred             ec-cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCCcE
Q 010669          306 LK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALV  381 (504)
Q Consensus       306 ~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg~I  381 (504)
                      +. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+......++....++-+|+|  ||+.+++. .|+++
T Consensus       118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl  195 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTL  195 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcE
Confidence            43 4556899999999999988876 88999999998776 44444333334567789999999  88888775 68999


Q ss_pred             EEEEcCCCceeeeee-CCCCCeEEEEEcCCC-cEEEEEeCCc-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECCC-CCE
Q 010669          382 KIWDVKSQANVAKFD-GHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHS-GSY  456 (504)
Q Consensus       382 ~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~g-~~l~s~~~d~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~~-g~~  456 (504)
                      ..||+|+.+....+. .|...|..+.|+|+- .+|+++++|+ |++||.|+.+ ++..+..|  ...|+++.|+|. .++
T Consensus       196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H--sHWvW~VRfn~~hdqL  273 (370)
T KOG1007|consen  196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH--SHWVWAVRFNPEHDQL  273 (370)
T ss_pred             EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC--ceEEEEEEecCccceE
Confidence            999999988776664 588889999999985 5678888888 9999999765 44455444  679999999995 577


Q ss_pred             EEEEeCc--EEEEEeeccCc-------------------------cceeEEEccCCCCCCceeEEEEee
Q 010669          457 LAVASAD--IRVYQVASVKA-------------------------DWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       457 l~~~~~d--i~vw~~~~~~~-------------------------~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      +++||.|  |.+|...+.+.                         .-..+.+|..|  ++.|.+++++.
T Consensus       274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh--EDSVY~~aWSs  340 (370)
T KOG1007|consen  274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH--EDSVYALAWSS  340 (370)
T ss_pred             EEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc--ccceEEEeecc
Confidence            8888888  88886543220                         01245678888  88888888764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=5.1e-18  Score=149.17  Aligned_cols=236  Identities=18%  Similarity=0.263  Sum_probs=181.9

Q ss_pred             CCCCCeEEEEeccCCC-----EEEEEeCCCcEEEEcCCC--Cce--EEEc-----ccCccceeEEEEee-CCCEEEEEeC
Q 010669          221 TSKPGIVSLDIHYSKD-----VIATGGVDTNAVLFDRPS--GQI--VTTL-----SGHSKKVTSVKFVT-EGDLFLTGSA  285 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~-----~l~sg~~dg~i~vwd~~~--~~~--~~~~-----~~h~~~v~~l~~s~-~~~~l~s~s~  285 (504)
                      .|.-+++.+-|.|+..     +||+.+  ..+++|.+..  .+.  ...+     ..+..++++..|+. +.+++.+++-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            4677899999999863     566654  3799998863  221  1111     24667899999987 7789999999


Q ss_pred             CCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEE
Q 010669          286 DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA  364 (504)
Q Consensus       286 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  364 (504)
                      |-+..|||++.+........+-.|..+|..++|...+ +.|++++.||.+++||++.......+....  ....+...++
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p--~~~~pLlRLs  249 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP--SPSTPLLRLS  249 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC--CCCCcceeec
Confidence            9999999999863434566677999999999999754 589999999999999999887666555321  2246788999


Q ss_pred             ECC-CCCEEEEEeCC-CcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcc------e
Q 010669          365 FHP-DGLILGTGTSE-ALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN------F  433 (504)
Q Consensus       365 ~~p-dg~~l~~g~~d-g~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~------~  433 (504)
                      |++ |-+++|+-..| ..|.|.|+|.. .++..+.+|.+.|+.++|.|. ...|+++++|. +.+||+...-.      +
T Consensus       250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi  329 (364)
T KOG0290|consen  250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI  329 (364)
T ss_pred             cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence            999 66777775544 57999999975 678899999999999999995 67899999998 99999975322      2


Q ss_pred             eeeecCCCCCCeeEEEECC-CCCEEEEEeCc
Q 010669          434 RSFESSDSETPTNSVDFDH-SGSYLAVASAD  463 (504)
Q Consensus       434 ~~~~~~~~~~~v~~i~~~~-~g~~l~~~~~d  463 (504)
                      ..+.   ..++|+.+.|++ .+..++++...
T Consensus       330 lay~---a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  330 LAYT---AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             hhhh---ccceeeeeeecccCCCEEEEEecC
Confidence            2232   257899999996 46788877665

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=5.6e-18  Score=154.44  Aligned_cols=273  Identities=13%  Similarity=0.175  Sum_probs=199.0

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC------CceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------GQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRV  291 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~i  291 (504)
                      ..+|.+-|.++.|+.++++|++|+.|..+.+|++..      .+.+.... .|...|.|++|...+.++++|+.+++|..
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK  131 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence            456889999999999999999999999999999753      24444433 46689999999988889999999999999


Q ss_pred             EeCCCCCCcceeEEec--cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCCCCCCeEEEEECC-
Q 010669          292 WQGSEDGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHP-  367 (504)
Q Consensus       292 wd~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p-  367 (504)
                      .|+++.   +.+..+.  ...+.|+.+..||..+.|++.+.+|.|.+||.+... ....+.   ..........+.|+| 
T Consensus       132 HDiEt~---qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~---~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  132 HDIETK---QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL---PANSGKNFYTAEFHPE  205 (609)
T ss_pred             eecccc---eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee---ecCCCccceeeeecCC
Confidence            999985   4444432  233589999999999999999999999999998765 222222   113345688999999 


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCc-eeeeeeC---C---CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcce-eeeec
Q 010669          368 DGLILGTGTSEALVKIWDVKSQA-NVAKFDG---H---VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF-RSFES  438 (504)
Q Consensus       368 dg~~l~~g~~dg~I~iwd~~~~~-~~~~~~~---~---~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~-~~~~~  438 (504)
                      ...+|++.+..+-+-+||.+... ++....+   -   ...-.++.|+|+|..|.+--... -.+||+-..++. ..+..
T Consensus       206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~  285 (609)
T KOG4227|consen  206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH  285 (609)
T ss_pred             CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence            56788999999999999998653 3322221   1   22336788999999988877665 567888764442 22221


Q ss_pred             CC----CCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccc-------------------eeEEEccCCCCCCceeE
Q 010669          439 SD----SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW-------------------NCIKTFPDLSGTGAASF  493 (504)
Q Consensus       439 ~~----~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~-------------------~~i~~~~~h~~~~~v~~  493 (504)
                      ..    ....+.+++|..+.. +++|+.+  +++|.+......+                   ..+..+.||  -+.+..
T Consensus       286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH--RSv~NQ  362 (609)
T KOG4227|consen  286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH--RSVPNQ  362 (609)
T ss_pred             CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc--cccccc
Confidence            11    123466788876544 7888888  9999985432221                   245677888  777888


Q ss_pred             EEEeecC
Q 010669          494 LFLFVLG  500 (504)
Q Consensus       494 l~~~~~g  500 (504)
                      +.|++-.
T Consensus       363 VRF~~H~  369 (609)
T KOG4227|consen  363 VRFSQHN  369 (609)
T ss_pred             eeecCCc
Confidence            8887654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.80  E-value=1.2e-19  Score=179.39  Aligned_cols=242  Identities=17%  Similarity=0.285  Sum_probs=190.7

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|.+.|+|+.|...|.++++|+.|..++||...++.++....||.+.|+.++.+.+..++++++.|..|++|.+..+ 
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~-  264 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG-  264 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC-
Confidence            4578999999999999999999999999999999999999999999999999999988889999999999999999886 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEE--------------eec--C---------CC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ--------------VSD--A---------GT  353 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~--------------~~~--~---------~~  353 (504)
                        .++..+.+|++.|++++|+|-.    +.+.||++++||.+-.-.+..              +..  .         ..
T Consensus       265 --~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~  338 (1113)
T KOG0644|consen  265 --APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG  338 (1113)
T ss_pred             --chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence              7788889999999999999854    788999999999871111110              000  0         00


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEe-----------CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc
Q 010669          354 DGRPEGYTSAAFHPDGLILGTGT-----------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG  421 (504)
Q Consensus       354 ~~~~~~v~~~~~~pdg~~l~~g~-----------~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~  421 (504)
                      ......+.+++|...+..++++.           .+-.+.+|++.++...+.+.+|...+..+.++| |.....+++.||
T Consensus       339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg  418 (1113)
T KOG0644|consen  339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG  418 (1113)
T ss_pred             ccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCC
Confidence            01112233445555444455544           344578899999999999999999999999999 566677888888


Q ss_pred             -EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669          422 -VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQV  469 (504)
Q Consensus       422 -v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~  469 (504)
                       ..|||+-.+.+++.+...  .+.+..-.|+++|..++....-..+|-+
T Consensus       419 st~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  419 STIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             ceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCceEEe
Confidence             999999999988887754  4677788999999988765544444443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.80  E-value=5.5e-17  Score=147.45  Aligned_cols=237  Identities=17%  Similarity=0.284  Sum_probs=179.9

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC--CcEEEEeCCCCCCc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD--KTVRVWQGSEDGNY  300 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d--g~i~iwd~~~~~~~  300 (504)
                      ...+..+.|+.+...|..|+.|| .++|+................|..+-|+  ..+++..+.+  ..+++++.+..   
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~---   78 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK---   78 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC---
Confidence            45677888999999999999998 6778766544322222223345555664  4455555543  35888988764   


Q ss_pred             ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe--CC
Q 010669          301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT--SE  378 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~--~d  378 (504)
                      ..+..+ .....|.++.++  .+.|+++-.+. |+|||+++.+.+.++...  ..+...+..+.+++.+.+++.-+  ..
T Consensus        79 ~~ICe~-~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~--~~n~~gl~AlS~n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   79 TTICEI-FFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETT--PPNPKGLCALSPNNANCYLAYPGSTTS  152 (391)
T ss_pred             ceEEEE-ecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhcc--CCCccceEeeccCCCCceEEecCCCCC
Confidence            222222 134678899886  45666665544 999999999999888642  13445677777777888888643  46


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY  456 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~  456 (504)
                      |.|.+||..+-+++..+..|.+++.+++|+++|.+||++++.|  |+||.+.+++.+..|........|.+++|+|++++
T Consensus       153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~  232 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF  232 (391)
T ss_pred             ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence            8999999999999999999999999999999999999999998  99999999999988876544567899999999999


Q ss_pred             EEEEeCc--EEEEEeec
Q 010669          457 LAVASAD--IRVYQVAS  471 (504)
Q Consensus       457 l~~~~~d--i~vw~~~~  471 (504)
                      |++.|+.  |+||.+..
T Consensus       233 L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  233 LAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEecCCCeEEEEEecc
Confidence            9988876  99999854

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=1.7e-17  Score=166.00  Aligned_cols=247  Identities=17%  Similarity=0.179  Sum_probs=178.9

Q ss_pred             CCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCCCCce--EEE----cccCccceeEEEEeeCC--CEEEEEeCCCcEEE
Q 010669          221 TSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQI--VTT----LSGHSKKVTSVKFVTEG--DLFLTGSADKTVRV  291 (504)
Q Consensus       221 ~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~--~~~----~~~h~~~v~~l~~s~~~--~~l~s~s~dg~i~i  291 (504)
                      ...+.|+|+.|+|. .++++.|..+|.|.+||+..+..  ...    ...|..+++.+.|..+.  .-+++++.||.|..
T Consensus       240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~  319 (555)
T KOG1587|consen  240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS  319 (555)
T ss_pred             ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence            34678999999994 56888899999999999987654  222    23688999999997644  34999999999999


Q ss_pred             EeCCCCCCcceeE---Eec------cCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCeEEE--Eee-cCCCCCCCC
Q 010669          292 WQGSEDGNYDCKH---TLK------DHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLT--QVS-DAGTDGRPE  358 (504)
Q Consensus       292 wd~~~~~~~~~~~---~~~------~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~--~~~-~~~~~~~~~  358 (504)
                      |+++.-.......   ...      .....++++.|.+. .+.|+.|+.+|.|..-+......-.  .+. ......|.+
T Consensus       320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence            9876532111100   000      12246889999984 5689999999998873322221111  111 112346788


Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcC-CCceeeeeeCCCCCeEEEEEcCCC-cEEEEEeCCc-EEEEEcCCCcc--e
Q 010669          359 GYTSAAFHPDGLILGTGTSEALVKIWDVK-SQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKN--F  433 (504)
Q Consensus       359 ~v~~~~~~pdg~~l~~g~~dg~I~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~g-~~l~s~~~d~-v~vwd~~~~~~--~  433 (504)
                      .|+++.++|-+..++..+.|.+++||... ...++..+..+...|++++|||-. ..|+++..+| +.+||+.....  +
T Consensus       400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv  479 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV  479 (555)
T ss_pred             ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence            99999999966555444459999999988 777888888888889999999965 5666667678 99999986543  3


Q ss_pred             eeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          434 RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       434 ~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      .+....  ....+.+.|+++|+.|++|...  +.+|++
T Consensus       480 ~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  480 LSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             cccccc--ccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            333333  4567788999999999999987  888888

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=2.8e-17  Score=165.19  Aligned_cols=234  Identities=16%  Similarity=0.132  Sum_probs=165.1

Q ss_pred             CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc
Q 010669          244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA  320 (504)
Q Consensus       244 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p  320 (504)
                      +..|.+||..... ...+..|...+.+..|+|||+.|+.++.+   ..|.+||+.++. ...+..+.+|   ...++|+|
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-~~~l~~~~g~---~~~~~wSP  257 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-RKVVASFRGH---NGAPAFSP  257 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-eEEEecCCCc---cCceeECC
Confidence            5789999986544 55667788889999999999998887654   369999997642 2233334343   44689999


Q ss_pred             CCCEEEEEe-CCCeEEE--EECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCC-ceeeee
Q 010669          321 TNKYFVTAS-LDNTWCF--YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQ-ANVAKF  395 (504)
Q Consensus       321 ~~~~l~s~s-~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~-~~~~~~  395 (504)
                      +|+.|+.++ .+|.+.|  ||+.++... .+.     .+...+....|+|||+.|+..+ .+|...||++... .....+
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt-----~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGGTPS-QLT-----SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCCCeE-eec-----cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence            999888764 6776555  566666543 332     2334577899999999776554 5788888887542 222222


Q ss_pred             eCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccC
Q 010669          396 DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK  473 (504)
Q Consensus       396 ~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~  473 (504)
                       .+.+  .+..|+|+|.+|+..+.+++.+||+.++........    .....+.|+|+|++|++++.+  ..+|.+..  
T Consensus       332 -~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~----~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~--  402 (429)
T PRK01742        332 -GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSST----FLDESPSISPNGIMIIYSSTQGLGKVLQLVS--  402 (429)
T ss_pred             -cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCC----CCCCCceECCCCCEEEEEEcCCCceEEEEEE--
Confidence             3433  467899999999988877777899988765432211    123567899999999998877  77776533  


Q ss_pred             ccceeEEEccCCCCCCceeEEEEeec
Q 010669          474 ADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       474 ~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      ..+..+..+.+|  .+.+...+|+|-
T Consensus       403 ~~G~~~~~l~~~--~g~~~~p~wsp~  426 (429)
T PRK01742        403 ADGRFKARLPGS--DGQVKFPAWSPY  426 (429)
T ss_pred             CCCCceEEccCC--CCCCCCcccCCC
Confidence            457788888887  677888888764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=5.8e-17  Score=164.56  Aligned_cols=266  Identities=16%  Similarity=0.263  Sum_probs=193.8

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccC---ccceeEEEEee--CCCEEEEEeCCCcEEEEeCCCC--
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGH---SKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSED--  297 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h---~~~v~~l~~s~--~~~~l~s~s~dg~i~iwd~~~~--  297 (504)
                      +-..+.|+|-...++++...-.|.|||.+.++.+..|..+   ...|+.+.+-.  |..++++|+.||.|+||+--..  
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            4567788998889999987789999999999988877643   35688898875  4558999999999999974332  


Q ss_pred             CCcceeEEecc-------CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CC
Q 010669          298 GNYDCKHTLKD-------HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DG  369 (504)
Q Consensus       298 ~~~~~~~~~~~-------h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg  369 (504)
                      ++.+.+....+       -.+.-.-+.|.....+|+++|.-..|+|||.........+..    +....++++.-+- .|
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~----~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY----GSSTLVTALSADLVHG 1221 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc----CCCccceeecccccCC
Confidence            22233332221       111124456776666777777788999999998887777753    3345667665544 57


Q ss_pred             CEEEEEeCCCcEEEEEcCCCc---eeeeeeCCCCC--eEEEEEcCCCcE-EEEEeCCc-EEEEEcCCCcce--eeeecCC
Q 010669          370 LILGTGTSEALVKIWDVKSQA---NVAKFDGHVGA--VTAISFSENGYY-LATAAHDG-VKLWDLRKLKNF--RSFESSD  440 (504)
Q Consensus       370 ~~l~~g~~dg~I~iwd~~~~~---~~~~~~~~~~~--i~~l~~s~~g~~-l~s~~~d~-v~vwd~~~~~~~--~~~~~~~  440 (504)
                      +++++|..||.|++||.|...   .+...+.|+..  |..+.+.++|.- |++|+.+| |++||+|.....  ..+..+.
T Consensus      1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred             ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence            999999999999999998753   46677888876  999999998765 99999999 999999984222  2222221


Q ss_pred             C-CCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCCC-----CCCceeEEEEeec
Q 010669          441 S-ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLS-----GTGAASFLFLFVL  499 (504)
Q Consensus       441 ~-~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~-----~~~~v~~l~~~~~  499 (504)
                      . ++..+++..++....+|+|+.. |+||++     .++.+..+..+.     ..+.++|+.|.|-
T Consensus      1302 ~yGs~lTal~VH~hapiiAsGs~q~ikIy~~-----~G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSAQLIKIYSL-----SGEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred             ccCccceeeeeccCCCeeeecCcceEEEEec-----ChhhhcccccCcccccCcCCCcceeeecch
Confidence            1 2348999999999999999977 999997     344444433321     1456788888763

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=3.5e-17  Score=143.99  Aligned_cols=263  Identities=16%  Similarity=0.289  Sum_probs=186.9

Q ss_pred             CeEEEEecc--C-CCEEEEEeC----CCcEEEEcC--CCCceEEEc-ccCccceeEEEEeeCCC-----EEEEEeCCCcE
Q 010669          225 GIVSLDIHY--S-KDVIATGGV----DTNAVLFDR--PSGQIVTTL-SGHSKKVTSVKFVTEGD-----LFLTGSADKTV  289 (504)
Q Consensus       225 ~I~~~~~s~--~-~~~l~sg~~----dg~i~vwd~--~~~~~~~~~-~~h~~~v~~l~~s~~~~-----~l~s~s~dg~i  289 (504)
                      +++++.|+.  + +.+|+.|+.    .+.|.|..+  .+++.+..- ..|.-+++.+.|.|+..     +|++++  ..+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L  123 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL  123 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence            578888884  2 347888873    455666543  344444332 25888999999999653     455543  379


Q ss_pred             EEEeCCCC-CCcceeEEe-----ccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeE--EEEeecCCCCCCCCCe
Q 010669          290 RVWQGSED-GNYDCKHTL-----KDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGIC--LTQVSDAGTDGRPEGY  360 (504)
Q Consensus       290 ~iwd~~~~-~~~~~~~~~-----~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v  360 (504)
                      |+|.+... ....+...+     ..+..+++++.|+. +.++|.++|-|-+..|||++++..  +++.    +..|...|
T Consensus       124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ----LIAHDKEV  199 (364)
T KOG0290|consen  124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ----LIAHDKEV  199 (364)
T ss_pred             EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE----EEecCcce
Confidence            99998752 222222222     24667999999986 667999999999999999999733  2222    23788999


Q ss_pred             EEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeeee---eCCCCCeEEEEEcC-CCcEEEEEeCCc--EEEEEcCCC-cc
Q 010669          361 TSAAFHPDG-LILGTGTSEALVKIWDVKSQANVAKF---DGHVGAVTAISFSE-NGYYLATAAHDG--VKLWDLRKL-KN  432 (504)
Q Consensus       361 ~~~~~~pdg-~~l~~g~~dg~I~iwd~~~~~~~~~~---~~~~~~i~~l~~s~-~g~~l~s~~~d~--v~vwd~~~~-~~  432 (504)
                      ..++|...+ ..||+.+.||.||+||+|.......+   .....+...++|++ |-++|++-..|+  |.+.|+|.. ..
T Consensus       200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp  279 (364)
T KOG0290|consen  200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP  279 (364)
T ss_pred             eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc
Confidence            999999955 58899999999999999987543333   22245888999998 457888888885  999999964 35


Q ss_pred             eeeeecCCCCCCeeEEEECCC-CCEEEEEeCc--EEEEEeeccCc-c-ceeEEEccCCCCCCceeEEEEee
Q 010669          433 FRSFESSDSETPTNSVDFDHS-GSYLAVASAD--IRVYQVASVKA-D-WNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       433 ~~~~~~~~~~~~v~~i~~~~~-g~~l~~~~~d--i~vw~~~~~~~-~-~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      +..+..|  ...|+.++|.|. ...|+++|+|  ..+||+....+ . ...+..+..   ++.|..+.+++
T Consensus       280 va~L~~H--~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a---~~EVNqi~Ws~  345 (364)
T KOG0290|consen  280 VARLRNH--QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA---GGEVNQIQWSS  345 (364)
T ss_pred             eehhhcC--cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc---cceeeeeeecc
Confidence            5666655  789999999995 5788889988  99999966433 1 223444432   56777777764

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.78  E-value=2e-17  Score=145.34  Aligned_cols=239  Identities=19%  Similarity=0.277  Sum_probs=174.9

Q ss_pred             ccCCCCCeEEEEeccCC-CEEEEEeCC-------CcEEEEcCCCC---------ceEEEcc-cCccceeEEEEeeCCCEE
Q 010669          219 HKTSKPGIVSLDIHYSK-DVIATGGVD-------TNAVLFDRPSG---------QIVTTLS-GHSKKVTSVKFVTEGDLF  280 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~-~~l~sg~~d-------g~i~vwd~~~~---------~~~~~~~-~h~~~v~~l~~s~~~~~l  280 (504)
                      +..|.+.|..++-+|-. ++|+++..+       ..+.||.+...         +++..+. .+-+.|.|+.|.|++..+
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl  138 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL  138 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence            34567789999988855 456655432       23678987532         2333443 455689999999999988


Q ss_pred             EEEeCCCcEEEEeCCCCCCcceeEEe-----ccCCcCeEEEEEcc--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q 010669          281 LTGSADKTVRVWQGSEDGNYDCKHTL-----KDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT  353 (504)
Q Consensus       281 ~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  353 (504)
                      ++-. |..|.+|++......  ...+     ..|....++-+|+|  +++.+++. .|+++..||+++.+....+..   
T Consensus       139 asm~-dn~i~l~~l~ess~~--vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d---  211 (370)
T KOG1007|consen  139 ASMD-DNNIVLWSLDESSKI--VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIED---  211 (370)
T ss_pred             EEec-cCceEEEEcccCcch--heeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhh---
Confidence            8765 789999999876431  2221     13556678888988  67777765 578999999999887777753   


Q ss_pred             CCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCC
Q 010669          354 DGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRK  429 (504)
Q Consensus       354 ~~~~~~v~~~~~~pdg-~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~  429 (504)
                       .|...+..+.|+|+. .+|++|+.||.|+|||.|.. .++..+.+|...|.++.|+|. ..++++|+.|. |.+|....
T Consensus       212 -AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  212 -AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             -hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence             677789999999965 57889999999999999875 578899999999999999994 67888899897 98986532


Q ss_pred             Cc-----------------------------ceeeeecCCCCCCeeEEEECCCCCEEE-EEeCcEEEE
Q 010669          430 LK-----------------------------NFRSFESSDSETPTNSVDFDHSGSYLA-VASADIRVY  467 (504)
Q Consensus       430 ~~-----------------------------~~~~~~~~~~~~~v~~i~~~~~g~~l~-~~~~di~vw  467 (504)
                      -.                             .+.++..  |...|++++|+.-..+++ +-+.|.|+.
T Consensus       291 vSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  291 VSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             cccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccCceEE
Confidence            11                             1122332  367899999998777655 457774443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.78  E-value=1.1e-15  Score=152.90  Aligned_cols=259  Identities=29%  Similarity=0.541  Sum_probs=196.6

Q ss_pred             CCeEEEEe-ccCCC-EEEEEeC-CCcEEEEcCCC-CceEEEcccCccceeEEEEeeCCCEEEEEeC-CCcEEEEeCCCCC
Q 010669          224 PGIVSLDI-HYSKD-VIATGGV-DTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSEDG  298 (504)
Q Consensus       224 ~~I~~~~~-s~~~~-~l~sg~~-dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg~i~iwd~~~~~  298 (504)
                      ..+..+.+ ++++. +++..+. |+.+.+|+... ......+..|...|..++|+|++..+++++. |+.+++|+.... 
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  188 (466)
T COG2319         110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-  188 (466)
T ss_pred             CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-
Confidence            36777777 77787 5555444 99999999987 7888889999999999999999998888885 999999999874 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEE-eecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQ-VSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                        .....+.+|...|.+++|+|++. .+++++.|+.|.+||...+..... +.     .|.... ...|+|++.++++++
T Consensus       189 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~  260 (466)
T COG2319         189 --KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-----GHSDSV-VSSFSPDGSLLASGS  260 (466)
T ss_pred             --ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-----CCCcce-eEeECCCCCEEEEec
Confidence              56777778999999999999998 555559999999999887766663 33     444443 338999998999999


Q ss_pred             CCCcEEEEEcCCCce-eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669          377 SEALVKIWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG  454 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g  454 (504)
                      .|+.+++||++.... +..+.+|...+.++.|+|++..+++++.++ +.+||+.+...........+...+..+.|.+++
T Consensus       261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (466)
T COG2319         261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG  340 (466)
T ss_pred             CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCC
Confidence            999999999987665 444467888999999999888888888888 999999887766655511224468889994333


Q ss_pred             CEEEEE-eCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          455 SYLAVA-SAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       455 ~~l~~~-~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      ..++.+ ..|  +.+|++..    .........+   ..+..+.+.+
T Consensus       341 ~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~  380 (466)
T COG2319         341 SLLVSGGSDDGTIRLWDLRT----GKPLKTLEGH---SNVLSVSFSP  380 (466)
T ss_pred             CEEEEeecCCCcEEeeecCC----CceeEEecCC---ceEEEEEECC
Confidence            566666 455  78898833    2233333332   1256666654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.78  E-value=1.4e-17  Score=161.33  Aligned_cols=238  Identities=13%  Similarity=0.217  Sum_probs=182.5

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      +..++|++.|+|++|+.||+.+++|+.|..|.+|+..-.. +..+ .|++.|-|+.|+|-...|++++-+ ..-+|....
T Consensus        47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q  123 (1081)
T KOG1538|consen   47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ  123 (1081)
T ss_pred             cccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhh
Confidence            3467899999999999999999999999999999854222 2223 499999999999988889998764 467897765


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC-----CE
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-----LI  371 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg-----~~  371 (504)
                      .    .+... .....|.+.+|..||.+++.|-.+|+|.+-+-.... ...+..  ..+.+++|.+++|+|..     .+
T Consensus       124 K----~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe-k~~I~R--pgg~Nspiwsi~~~p~sg~G~~di  195 (1081)
T KOG1538|consen  124 K----SVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE-KVKIER--PGGSNSPIWSICWNPSSGEGRNDI  195 (1081)
T ss_pred             h----hHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc-ceEEeC--CCCCCCCceEEEecCCCCCCccce
Confidence            2    22211 234578999999999999999999999998654333 333332  23567899999999943     47


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEE
Q 010669          372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF  450 (504)
Q Consensus       372 l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~  450 (504)
                      +++..-+.++.+|.+ +|+.+..-+.-.-...|+.+.+||.+++.|+.|+ +.+|- |.|-.+-++...  +.+|+.++.
T Consensus       196 ~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~--D~WIWtV~~  271 (1081)
T KOG1538|consen  196 LAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ--DSWIWTVQA  271 (1081)
T ss_pred             EEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc--ceeEEEEEE
Confidence            777777788888877 4555543333444667999999999999999998 88884 556555555443  679999999


Q ss_pred             CCCCCEEEEEeCc--EEEEEe
Q 010669          451 DHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       451 ~~~g~~l~~~~~d--i~vw~~  469 (504)
                      .|++++++.|+.|  +..|++
T Consensus       272 ~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  272 KPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ccCCceEEEEEccCeeehhhh
Confidence            9999999999999  777776

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=4.5e-16  Score=151.63  Aligned_cols=256  Identities=12%  Similarity=0.170  Sum_probs=168.2

Q ss_pred             EEEEeCCCcEEEEcCCC-Cc--eEEEcccCccceeEEEEeeCCCEEEEEe-CCCcEEEEeCCCCCCcceeEEeccCCcCe
Q 010669          238 IATGGVDTNAVLFDRPS-GQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHTLKDHTAEV  313 (504)
Q Consensus       238 l~sg~~dg~i~vwd~~~-~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  313 (504)
                      +++...++.|.+|++.+ ++  .+..+. +.+....++++|++++|++++ .++.|.+|++...+......... ..+..
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p   82 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP   82 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence            34446789999999964 33  445554 345678899999999887664 58899999997433333333332 23456


Q ss_pred             EEEEEccCCCEEEEEeC-CCeEEEEECCCCe-EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCc
Q 010669          314 QAVTVHATNKYFVTASL-DNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQA  390 (504)
Q Consensus       314 ~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~~  390 (504)
                      ..+.|+|+++++++++. ++.|.+||+++.. .......  . .+.....+++++|+|+++++++ .++.|.+||+.+..
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~--~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI--I-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee--c-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence            78999999998888775 8899999997432 1111110  0 1123467789999998886554 56999999997633


Q ss_pred             eee-------eeeCCCCCeEEEEEcCCCcEEEEEeC-Cc-EEEEEcCC--C--cceeeeecCC----CCCCeeEEEECCC
Q 010669          391 NVA-------KFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRK--L--KNFRSFESSD----SETPTNSVDFDHS  453 (504)
Q Consensus       391 ~~~-------~~~~~~~~i~~l~~s~~g~~l~s~~~-d~-v~vwd~~~--~--~~~~~~~~~~----~~~~v~~i~~~~~  453 (504)
                      .+.       ... .......+.|+|+|++++++.. ++ |.+||+..  +  +.+..+....    .......+.|+|+
T Consensus       160 ~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd  238 (330)
T PRK11028        160 HLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD  238 (330)
T ss_pred             cccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence            221       111 1234678999999999988876 45 99999973  2  2233332211    1122346889999


Q ss_pred             CCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          454 GSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       454 g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      |++++++...   |.+|+++......+.+..+..   ......+.++++|+.
T Consensus       239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~  287 (330)
T PRK11028        239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKY  287 (330)
T ss_pred             CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCE
Confidence            9999998543   999999654434445554433   123457788888864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=7.4e-18  Score=155.74  Aligned_cols=198  Identities=22%  Similarity=0.278  Sum_probs=152.2

Q ss_pred             EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe
Q 010669          227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL  306 (504)
Q Consensus       227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  306 (504)
                      .+++|+.+|..|++|+.||+++||++.+...+.....|.+.|.++.|+|||++|++-+.| ..+||+..++.   ++...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~---~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA---ALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc---hhhhc
Confidence            689999999999999999999999998888888888899999999999999999999999 89999998862   33222


Q ss_pred             c--cCCcCeEEEEEccCC---C--EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669          307 K--DHTAEVQAVTVHATN---K--YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA  379 (504)
Q Consensus       307 ~--~h~~~v~~l~~~p~~---~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg  379 (504)
                      .  ........+.|+.++   .  .++....-+.|..||+.....-..+...........|++++.++||++++.|+.||
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG  303 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG  303 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence            2  223345667777666   2  23333445567777664332211111111112235799999999999999999999


Q ss_pred             cEEEEEcCCCceeeeee-CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC
Q 010669          380 LVKIWDVKSQANVAKFD-GHVGAVTAISFSENGYYLATAAHDG-VKLWDLR  428 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~  428 (504)
                      .|.|++..+.+.++..+ .|...|+.+.|+|+.+++++.+.+. ..|..+.
T Consensus       304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            99999999888776664 6999999999999999999988876 7766654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=1.9e-17  Score=159.48  Aligned_cols=233  Identities=16%  Similarity=0.297  Sum_probs=169.1

Q ss_pred             ccCCCEEEE--EeCCCcEEEEcCCCC-ce----EEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCC----
Q 010669          232 HYSKDVIAT--GGVDTNAVLFDRPSG-QI----VTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN----  299 (504)
Q Consensus       232 s~~~~~l~s--g~~dg~i~vwd~~~~-~~----~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~----  299 (504)
                      +.+..++++  .+..|.|-||++... ++    +-.+. ....|+.+.|.| |...|++++.||.|++|.+..++.    
T Consensus       588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~  666 (1012)
T KOG1445|consen  588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE  666 (1012)
T ss_pred             eeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence            334455544  355789999998642 22    22222 345699999999 777899999999999999876542    


Q ss_pred             cceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          300 YDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                      ......+..|...|+++.||| ..+.|++++.|.+|++||+.+++....+.     +|...|..++|+|||+.+++.+.|
T Consensus       667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-----gHtdqIf~~AWSpdGr~~AtVcKD  741 (1012)
T KOG1445|consen  667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-----GHTDQIFGIAWSPDGRRIATVCKD  741 (1012)
T ss_pred             CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-----cCcCceeEEEECCCCcceeeeecC
Confidence            234566789999999999999 45789999999999999999988777665     888999999999999999999999


Q ss_pred             CcEEEEEcCCCc-eeeeeeCCC-CCeEEEEEcCCCcEEEEEeCC----c-EEEEEcCCCc--ceeeeecCCCCCCeeEEE
Q 010669          379 ALVKIWDVKSQA-NVAKFDGHV-GAVTAISFSENGYYLATAAHD----G-VKLWDLRKLK--NFRSFESSDSETPTNSVD  449 (504)
Q Consensus       379 g~I~iwd~~~~~-~~~~~~~~~-~~i~~l~~s~~g~~l~s~~~d----~-v~vwd~~~~~--~~~~~~~~~~~~~v~~i~  449 (504)
                      |+|++|..+++. +++.-++.. ..--.|.|.-+|+++++.+-|    . |.+||..+..  .+.+..... ...+.--.
T Consensus       742 g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-aps~LvP~  820 (1012)
T KOG1445|consen  742 GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-APSPLVPH  820 (1012)
T ss_pred             ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-cCcccccc
Confidence            999999998764 444433322 233467788899998887766    2 8899977643  333332211 12223335


Q ss_pred             ECCCCCEEE-EEeCc--EEEEEeec
Q 010669          450 FDHSGSYLA-VASAD--IRVYQVAS  471 (504)
Q Consensus       450 ~~~~g~~l~-~~~~d--i~vw~~~~  471 (504)
                      +++|.+.|+ +|-.|  |.+|.+-.
T Consensus       821 YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  821 YDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             ccCCCceEEEecCCCceEEEEEecC
Confidence            677766655 45455  88888743

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.3e-16  Score=158.10  Aligned_cols=281  Identities=16%  Similarity=0.226  Sum_probs=206.9

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC----CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS----GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW  292 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iw  292 (504)
                      .....|.-.++|.++||+++++++|..||.|.+|.-..    ......+.-|...|++++|+++|.+|++||..|.+.+|
T Consensus       199 ~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  199 DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW  278 (792)
T ss_pred             hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence            34555666799999999999999999999999996332    23356677899999999999999999999999999999


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC------CCCCCeEEEEEC
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD------GRPEGYTSAAFH  366 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~~  366 (504)
                      .+.+++    ..-+..-.++|..+.++||+.+.+....|..|.+....+......+......      ...+-.+.++++
T Consensus       279 q~~T~~----kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id  354 (792)
T KOG1963|consen  279 QLETGK----KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID  354 (792)
T ss_pred             eecCCC----cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence            998863    2333445688999999999999999999999999877655444443321110      123456789999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCceeeeeeC-----------CCCCeEEEEEcCCCcEEEEEe--------CCc---EEE
Q 010669          367 PDGLILGTGTSEALVKIWDVKSQANVAKFDG-----------HVGAVTAISFSENGYYLATAA--------HDG---VKL  424 (504)
Q Consensus       367 pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~-----------~~~~i~~l~~s~~g~~l~s~~--------~d~---v~v  424 (504)
                      |..+.++..+..|.|.+||+-+.+.+..+..           +.-.++.++.+-+|.++++.-        .|+   +++
T Consensus       355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF  434 (792)
T KOG1963|consen  355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF  434 (792)
T ss_pred             CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence            9777888888999999999988777665531           223578888888999999973        232   889


Q ss_pred             EEcCCCc----ceeeeecCCCCCCeeEEEECCCCC-EEEEEeCc--EEEEEe------eccCccceeEEEccCCCCCCce
Q 010669          425 WDLRKLK----NFRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQV------ASVKADWNCIKTFPDLSGTGAA  491 (504)
Q Consensus       425 wd~~~~~----~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~~~d--i~vw~~------~~~~~~~~~i~~~~~h~~~~~v  491 (504)
                      |-.....    ....+..++....+..+..++... .+++++.|  ++||.+      .+....|.|...-.-|  ..++
T Consensus       435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~--k~~i  512 (792)
T KOG1963|consen  435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH--KTPI  512 (792)
T ss_pred             EEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc--cCcc
Confidence            9765433    222333332233333444444444 77788777  999998      5555678887765456  7899


Q ss_pred             eEEEEeecCccc
Q 010669          492 SFLFLFVLGQTC  503 (504)
Q Consensus       492 ~~l~~~~~g~~~  503 (504)
                      ++.+|+.||.+.
T Consensus       513 ~a~~fs~dGsll  524 (792)
T KOG1963|consen  513 TALCFSQDGSLL  524 (792)
T ss_pred             cchhhcCCCcEE
Confidence            999999999653

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=2.4e-17  Score=158.03  Aligned_cols=230  Identities=20%  Similarity=0.278  Sum_probs=173.8

Q ss_pred             eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCC--EEEEEeCCCeE
Q 010669          257 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK--YFVTASLDNTW  334 (504)
Q Consensus       257 ~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~l~s~s~dg~i  334 (504)
                      +-..+.+|++.|.++...|.|.+|++|+.||+|+||.+.++   .|+.++. ..+.|.|++|+|.++  .|+++ .+..+
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg---Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~  466 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG---RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECV  466 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc---eEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCce
Confidence            34567899999999999999999999999999999999997   7888775 456899999999765  33333 33334


Q ss_pred             EEEECCCCeEE----------------------EEeecC----------CCCCCCCCeEEEEECCCCCEEEEEeCC---C
Q 010669          335 CFYDLSSGICL----------------------TQVSDA----------GTDGRPEGYTSAAFHPDGLILGTGTSE---A  379 (504)
Q Consensus       335 ~iwd~~~~~~~----------------------~~~~~~----------~~~~~~~~v~~~~~~pdg~~l~~g~~d---g  379 (504)
                      .|.+..-|..+                      ......          -...|...|..+.||..|.+|++...+   .
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence            44443221000                      000000          001355678999999999999997654   4


Q ss_pred             cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEE
Q 010669          380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV  459 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~  459 (504)
                      .|.|+++.......-|.-..+.|.++.|+|...+|++++...|++||+.+...++.+...  ...|.+++.+|.|.-|+.
T Consensus       547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg--~kwiS~msihp~GDnli~  624 (733)
T KOG0650|consen  547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTG--SKWISSMSIHPNGDNLIL  624 (733)
T ss_pred             eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcC--CeeeeeeeecCCCCeEEE
Confidence            799999987766666655667899999999999999999999999999987777766544  568999999999999999


Q ss_pred             EeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          460 ASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       460 ~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      |+.|  +..||++..++   ..+++..|  ...|++++|.+
T Consensus       625 gs~d~k~~WfDldlssk---Pyk~lr~H--~~avr~Va~H~  660 (733)
T KOG0650|consen  625 GSYDKKMCWFDLDLSSK---PYKTLRLH--EKAVRSVAFHK  660 (733)
T ss_pred             ecCCCeeEEEEcccCcc---hhHHhhhh--hhhhhhhhhcc
Confidence            9999  88889865544   44556666  66777777654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.75  E-value=3.9e-17  Score=154.58  Aligned_cols=203  Identities=15%  Similarity=0.261  Sum_probs=163.1

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeE
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ  314 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  314 (504)
                      .+.++.++.||.+.+.+- .++..+.+..|.+.|.+-.|+|+|.-|++++.||.|++|.-..    ....++.....+|.
T Consensus        75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG----MLRStl~Q~~~~v~  149 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG----MLRSTVVQNEESIR  149 (737)
T ss_pred             cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc----hHHHHHhhcCceeE
Confidence            357788889999999874 5777788899999999999999999999999999999998543    33344445667899


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 010669          315 AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK  394 (504)
Q Consensus       315 ~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~  394 (504)
                      |++|.|+.+.++.+- .+.+.|=-+.....+....     .|.+-|.++.|++..+++++|++|-..+|||- .|..+..
T Consensus       150 c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-----AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~  222 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-----AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFT  222 (737)
T ss_pred             EEEECCCCCceEEec-CCeEEEeecccccceeEEe-----ccCcEEEEeecCccccceeecCCceeEEeecc-cCccccc
Confidence            999999887666653 3456665665554454554     77889999999999999999999999999996 5677777


Q ss_pred             eeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          395 FDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       395 ~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      -..|..+|++++|+|+ ..++.++.+.++            +..+ ..+.|..++|++||..+++|+..
T Consensus       223 S~~~ey~ITSva~npd-~~~~v~S~nt~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~  277 (737)
T KOG1524|consen  223 SAAEEYAITSVAFNPE-KDYLLWSYNTAR------------FSSP-RVGSIFNLSWSADGTQATCGTST  277 (737)
T ss_pred             CChhccceeeeeeccc-cceeeeeeeeee------------ecCC-CccceEEEEEcCCCceeeccccC
Confidence            7889999999999999 666777665555            2221 24679999999999999988877

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3.7e-16  Score=134.28  Aligned_cols=222  Identities=11%  Similarity=0.142  Sum_probs=159.5

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC-------CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 010669          267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG-------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL  339 (504)
Q Consensus       267 ~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~  339 (504)
                      .|..-+|+|.+++|+.|+.+|+|.+..+....       ....+...++|.++|+.++|+  ..+|++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            46667889999999999999999999876421       113445568999999999998  55677766 499999877


Q ss_pred             CCCeEE------EEeecC--CCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCC
Q 010669          340 SSGICL------TQVSDA--GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG  411 (504)
Q Consensus       340 ~~~~~~------~~~~~~--~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g  411 (504)
                      +.....      ......  .....-..|+++...|..+-++.++.|+.++.||+.+|+...++++|...|.++.--...
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~  168 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN  168 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence            543221      001000  000112358899999977666666799999999999999999999999999999985555


Q ss_pred             cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCC------CeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEcc
Q 010669          412 YYLATAAHDG-VKLWDLRKLKNFRSFESSDSET------PTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFP  483 (504)
Q Consensus       412 ~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~------~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~  483 (504)
                      ..+++|++|| +++||+++++++..+...++..      .-+-.+..-+..+|++|+.- +.+|.+.+  .+-.++..++
T Consensus       169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrs--se~t~vfpip  246 (325)
T KOG0649|consen  169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRS--SESTCVFPIP  246 (325)
T ss_pred             cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccC--CCceEEEecc
Confidence            6788999999 9999999999988887644321      11124555677899998877 99999943  2334444444


Q ss_pred             CCCCCCceeEEEEee
Q 010669          484 DLSGTGAASFLFLFV  498 (504)
Q Consensus       484 ~h~~~~~v~~l~~~~  498 (504)
                      +|     |..+.|..
T Consensus       247 a~-----v~~v~F~~  256 (325)
T KOG0649|consen  247 AR-----VHLVDFVD  256 (325)
T ss_pred             cc-----eeEeeeec
Confidence            43     55555543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.75  E-value=4.7e-17  Score=141.38  Aligned_cols=245  Identities=13%  Similarity=0.188  Sum_probs=185.0

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      +.|.+.|+++.|..+++ |.+|..-|.|++|++.+......+. .|...|+.+.-.|+ ..+.+-+.|+.+.+|++....
T Consensus        11 Rp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~   88 (323)
T KOG0322|consen   11 RPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA   88 (323)
T ss_pred             ccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc
Confidence            47888999999987665 8899999999999999988888887 67778888888876 568888999999999865410


Q ss_pred             CcceeE-----------------------------------------------Ee----ccCCcCeEEEEEcc-CCC--E
Q 010669          299 NYDCKH-----------------------------------------------TL----KDHTAEVQAVTVHA-TNK--Y  324 (504)
Q Consensus       299 ~~~~~~-----------------------------------------------~~----~~h~~~v~~l~~~p-~~~--~  324 (504)
                       +..++                                               ..    .+..+.+.+..+.. ++.  +
T Consensus        89 -~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~l  167 (323)
T KOG0322|consen   89 -FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFL  167 (323)
T ss_pred             -eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEE
Confidence             00000                                               00    01223455555432 233  5


Q ss_pred             EEEEeCCCeEEEEECCCCeEEEEeecC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC--ce--eeee
Q 010669          325 FVTASLDNTWCFYDLSSGICLTQVSDA-----GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ--AN--VAKF  395 (504)
Q Consensus       325 l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~--~~--~~~~  395 (504)
                      ++.|-.+|.+.+||+.++..+..+...     ....|..++.++.|.+.-..=++|+.+..+..|++...  ..  -...
T Consensus       168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~  247 (323)
T KOG0322|consen  168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI  247 (323)
T ss_pred             EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence            667788999999999998544443311     12357789999999986555667788888899988643  21  1122


Q ss_pred             eCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          396 DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       396 ~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      .-.+-.|..+..-||++.+++++.|+ |+||..+++.++..+..|  ...|.+++|+|+...+|+++.|  |.+|++
T Consensus       248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            22345688999999999999999998 999999999999999887  5899999999999999999999  999986

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=2.9e-16  Score=140.14  Aligned_cols=201  Identities=16%  Similarity=0.192  Sum_probs=163.8

Q ss_pred             CccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC-CCC
Q 010669          264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL-SSG  342 (504)
Q Consensus       264 h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~-~~~  342 (504)
                      ...+|+|.+|++|+..++.+-....|.||.....+.++..+++..|...|++++|+|..+.|++|+.|..-++|.. ..+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            4578999999999999999999999999999887768999999999999999999999999999999999999998 444


Q ss_pred             eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee----eeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669          343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV----AKFDGHVGAVTAISFSENGYYLATAA  418 (504)
Q Consensus       343 ~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~----~~~~~~~~~i~~l~~s~~g~~l~s~~  418 (504)
                      +-...+.   ...++...+++.|+|.++.|++|+....|.||-+.....-    +.-+.+.+.|+++.|+||+-+|++|+
T Consensus        89 ~Wkptlv---LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   89 TWKPTLV---LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             eecccee---EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence            4333332   1245678999999999999999999999999987654322    22245678899999999999999999


Q ss_pred             CCc-EEEEEcC-----C-------------CcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          419 HDG-VKLWDLR-----K-------------LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       419 ~d~-v~vwd~~-----~-------------~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      .|+ .+||..-     .             |..+..+.  ...+.+..+.|+|+|..|+-.+.|  +.+=|.
T Consensus       166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA  235 (361)
T ss_pred             cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence            998 8888642     0             11222222  226789999999999999999988  766665

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.74  E-value=9.5e-17  Score=152.03  Aligned_cols=248  Identities=17%  Similarity=0.199  Sum_probs=174.9

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEE-cCCCCceEEEcccCccceeEEEE-e-------eCCCEEEEEeCCCcEEEE
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLF-DRPSGQIVTTLSGHSKKVTSVKF-V-------TEGDLFLTGSADKTVRVW  292 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vw-d~~~~~~~~~~~~h~~~v~~l~~-s-------~~~~~l~s~s~dg~i~iw  292 (504)
                      |...|.|+.|+.+...+.+++++ .+.+| |+.+. ....+.-...-|....+ -       .....|+.++.||.+.+.
T Consensus        13 ~~e~vc~v~w~~~eei~~~~dDh-~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSDDH-QIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             cceeEEeecccccceEEEeccCc-eEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            44456789999877777766544 55555 44332 22222211111111111 0       123468889999999998


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      +-..    +....+..|.+.+.+-.|+|+|.-+++++.||.|++|.- +|.....+.     ....+|.|++|.|+.+-+
T Consensus        91 ~k~~----rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~-----Q~~~~v~c~~W~p~S~~v  160 (737)
T KOG1524|consen   91 NKSA----RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV-----QNEESIRCARWAPNSNSI  160 (737)
T ss_pred             cccc----hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHh-----hcCceeEEEEECCCCCce
Confidence            7543    556677899999999999999999999999999999984 343333332     223579999999987766


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669          373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       373 ~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      +.+ ..+.+.|=.+.....+..++.|.+-|.++.|++...++++|++|- .++||-. |..+..-..  +..+|++++|.
T Consensus       161 l~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~--~ey~ITSva~n  236 (737)
T KOG1524|consen  161 VFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA--EEYAITSVAFN  236 (737)
T ss_pred             EEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh--hccceeeeeec
Confidence            554 346777877777777888999999999999999999999999997 9999975 444444433  37899999999


Q ss_pred             CCCCEEEEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCccc
Q 010669          452 HSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       452 ~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~  503 (504)
                      |+ ..++.++.+ .+                |.. ...+.|..+++++||..+
T Consensus       237 pd-~~~~v~S~nt~R----------------~~~-p~~GSifnlsWS~DGTQ~  271 (737)
T KOG1524|consen  237 PE-KDYLLWSYNTAR----------------FSS-PRVGSIFNLSWSADGTQA  271 (737)
T ss_pred             cc-cceeeeeeeeee----------------ecC-CCccceEEEEEcCCCcee
Confidence            99 556666655 44                211 136778888888888654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=5e-17  Score=154.32  Aligned_cols=221  Identities=21%  Similarity=0.319  Sum_probs=166.8

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEc-ccCccceeEEEEee--CCCEEEEEeCCCcEEEEeC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~--~~~~l~s~s~dg~i~iwd~  294 (504)
                      ...+|.+-|.|+.|+.+|.+|++|+.|-.+.|||....+++..+ .+|...|.++.|-|  +.+.+++|..|..|+++|+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl  124 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL  124 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence            46789999999999999999999999999999999888887776 58999999999998  5568999999999999998


Q ss_pred             CCCC-------CcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeec-----CCCCCCCCCeE
Q 010669          295 SEDG-------NYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSD-----AGTDGRPEGYT  361 (504)
Q Consensus       295 ~~~~-------~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~v~  361 (504)
                      ....       ......-+..|...|..|+..|++ +.|.+++.||+|+-+|++....-..-..     ......--...
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk  204 (758)
T KOG1310|consen  125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK  204 (758)
T ss_pred             ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence            7421       123445566899999999999988 7899999999999999986321110000     00001123467


Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEEcCCC--------c----------eeeeee-CCC-----------CCeEEEEEcCC
Q 010669          362 SAAFHP-DGLILGTGTSEALVKIWDVKSQ--------A----------NVAKFD-GHV-----------GAVTAISFSEN  410 (504)
Q Consensus       362 ~~~~~p-dg~~l~~g~~dg~I~iwd~~~~--------~----------~~~~~~-~~~-----------~~i~~l~~s~~  410 (504)
                      |+.++| +..+|++|+.|-..++||.|..        .          ++..|. +|.           ..++.+.|+||
T Consensus       205 ~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpN  284 (758)
T KOG1310|consen  205 CLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPN  284 (758)
T ss_pred             eeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCC
Confidence            999999 6689999999999999995321        1          122221 221           12567899999


Q ss_pred             CcEEEEEeCCc-EEEEEcCCCcceeeeec
Q 010669          411 GYYLATAAHDG-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       411 g~~l~s~~~d~-v~vwd~~~~~~~~~~~~  438 (504)
                      |.-|++.-.+. |++||+..++....+..
T Consensus       285 GtElLvs~~gEhVYlfdvn~~~~~~~y~~  313 (758)
T KOG1310|consen  285 GTELLVSWGGEHVYLFDVNEDKSPTPYFL  313 (758)
T ss_pred             CcEEEEeeCCeEEEEEeecCCCCceeecC
Confidence            98777665554 99999998876655543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=4.1e-17  Score=155.71  Aligned_cols=219  Identities=20%  Similarity=0.283  Sum_probs=163.7

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----------ceEEEcccCccceeEEEEeeCCCEEEEEeCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK  287 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg  287 (504)
                      -+++|.++|.|+++.+++..+++||.||+|+.|++...          .....+.||++.|+.+++|+....|++++.||
T Consensus       339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg  418 (577)
T KOG0642|consen  339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG  418 (577)
T ss_pred             EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCc
Confidence            35789999999999999999999999999999965421          23456789999999999999888999999999


Q ss_pred             cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCC--CCCCCeEEEE
Q 010669          288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTD--GRPEGYTSAA  364 (504)
Q Consensus       288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~  364 (504)
                      +++.|+......  +........+.-.++.+-... .+.++...-+.--++|++.......+......  .....+.-+.
T Consensus       419 Tvr~w~~~~~~~--~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV  496 (577)
T KOG0642|consen  419 TVRLWEPTEESP--CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV  496 (577)
T ss_pred             eEEeeccCCcCc--cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence            999999876432  111111122334555554332 23333333334444555555444444322111  1124578899


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec
Q 010669          365 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       365 ~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~  438 (504)
                      ++|.+.+.+++..|+.|+++|..+++.+.....|...++++++.|+|-+|++++.|+ +++|.+....++.....
T Consensus       497 s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~  571 (577)
T KOG0642|consen  497 SHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA  571 (577)
T ss_pred             ecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence            999999999999999999999999999999999999999999999999999999999 99999876666554443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=6.7e-17  Score=149.44  Aligned_cols=194  Identities=22%  Similarity=0.349  Sum_probs=153.9

Q ss_pred             eEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 010669          269 TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV  348 (504)
Q Consensus       269 ~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~  348 (504)
                      .+++|+.+|..+++|+.||++|||++...   ..+.....|...|.++.|+|||++|++.+.| ...||+.+++..+...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            78999999999999999999999997664   5556667888999999999999999999999 9999999999766665


Q ss_pred             ecCCCCCCCCCeEEEEECCCC-----CEEEEEeCCCcEEEEEcCCCce-----eeeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669          349 SDAGTDGRPEGYTSAAFHPDG-----LILGTGTSEALVKIWDVKSQAN-----VAKFDGHVGAVTAISFSENGYYLATAA  418 (504)
Q Consensus       349 ~~~~~~~~~~~v~~~~~~pdg-----~~l~~g~~dg~I~iwd~~~~~~-----~~~~~~~~~~i~~l~~s~~g~~l~s~~  418 (504)
                      ..   ...+..+..+.|+.|+     .+++.-..-+.|+.||+.....     ..+...-...|++++.+++|++++.|+
T Consensus       224 t~---~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT  300 (398)
T KOG0771|consen  224 TP---FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT  300 (398)
T ss_pred             CC---cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence            42   2445567788898877     3444445567788887754322     111111234799999999999999999


Q ss_pred             CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEee
Q 010669          419 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA  470 (504)
Q Consensus       419 ~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~  470 (504)
                      .+| |-|++..+.+.++.++. .|...|+.+.|+|+.+++++.+.+  ..|..+.
T Consensus       301 ~dGsVai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  301 MDGSVAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             cCCcEEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            999 99999999887776554 346799999999999999988777  7777763

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=3.8e-14  Score=129.18  Aligned_cols=190  Identities=14%  Similarity=0.280  Sum_probs=149.1

Q ss_pred             eEEEEeccCCCEEEEEeCC--CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669          226 IVSLDIHYSKDVIATGGVD--TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  303 (504)
                      |.-+-|+  ..++|..+.+  ..+++++.+.+..+..+. ....|.+|.++  .+.|+++-.+ .|.|||+++.   +.+
T Consensus        49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~M---klL  119 (391)
T KOG2110|consen   49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDM---KLL  119 (391)
T ss_pred             EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccc---eee
Confidence            4444455  5566655544  348999988887777766 45679999984  4567776665 4999999886   444


Q ss_pred             EEec---cCCcCeEEEEEccCCCEEEEEe--CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          304 HTLK---DHTAEVQAVTVHATNKYFVTAS--LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       304 ~~~~---~h~~~v~~l~~~p~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                      +++.   .+...+.++.+++.+.+++.-+  ..|.|.+||..+-+.+..+.     .|.+.+.|++|+++|.+||+++..
T Consensus       120 hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-----aH~~~lAalafs~~G~llATASeK  194 (391)
T KOG2110|consen  120 HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-----AHKGPLAALAFSPDGTLLATASEK  194 (391)
T ss_pred             hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-----ecCCceeEEEECCCCCEEEEeccC
Confidence            4443   4556688888887778888643  46899999999998888886     788999999999999999999999


Q ss_pred             Cc-EEEEEcCCCceeeeeeCC--CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC
Q 010669          379 AL-VKIWDVKSQANVAKFDGH--VGAVTAISFSENGYYLATAAHDG-VKLWDLRK  429 (504)
Q Consensus       379 g~-I~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~  429 (504)
                      |+ ||||.+.+|+.+.+|+.-  ...|.+++|+|++.+|++.+..+ |.+|.+.+
T Consensus       195 GTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  195 GTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             ceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            96 699999999999999742  24688999999999999888777 99998864

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.8e-15  Score=135.07  Aligned_cols=230  Identities=19%  Similarity=0.262  Sum_probs=162.6

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ..+.-++|++.-..++++..|-.|++|+-.. +....++ .....|+|++|-|.+ ..|+.|+.. -|.+|......+..
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence            3577889999777889999999999999765 5545554 234679999999954 457777665 58999765432111


Q ss_pred             -----------eeEEeccCCcCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC
Q 010669          302 -----------CKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG  369 (504)
Q Consensus       302 -----------~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg  369 (504)
                                 .+....+| .+|+++.|++||..+++++. |..|.|||.+++..+....     .....++-+.|+|||
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-----~glgg~slLkwSPdg  250 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-----KGLGGFSLLKWSPDG  250 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-----cCCCceeeEEEcCCC
Confidence                       11222345 67999999999999999886 5689999999987765542     123568899999999


Q ss_pred             CEEEEEeCCCcEEEEEcCC-CceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCc----c-----------e
Q 010669          370 LILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLK----N-----------F  433 (504)
Q Consensus       370 ~~l~~g~~dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~----~-----------~  433 (504)
                      .+|++++-|+..++|+... .....-.- ..+.|...+|+|+|.+|+....+.-++|.+.-..    .           +
T Consensus       251 d~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lli  329 (445)
T KOG2139|consen  251 DVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLI  329 (445)
T ss_pred             CEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeee
Confidence            9999999999999996543 33332222 3458999999999998887776654445432110    0           0


Q ss_pred             eeeec---C----CCCCCeeEEEECCCCCEEEEEeC
Q 010669          434 RSFES---S----DSETPTNSVDFDHSGSYLAVASA  462 (504)
Q Consensus       434 ~~~~~---~----~~~~~v~~i~~~~~g~~l~~~~~  462 (504)
                      ..+..   .    -..+++.+++|+|.|.||++.-.
T Consensus       330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             ccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence            00000   0    01457889999999999998743

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.71  E-value=4.2e-16  Score=143.22  Aligned_cols=194  Identities=18%  Similarity=0.308  Sum_probs=152.0

Q ss_pred             ccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCC------CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEE
Q 010669          265 SKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDG------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY  337 (504)
Q Consensus       265 ~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iw  337 (504)
                      ..+|..+.|.++.. .++||+.|..|++|-+....      .......+..|...|+++.|+|+|+.+++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            35788999988665 89999999999999876532      233455677899999999999999999999999999999


Q ss_pred             ECC--------C-----Ce-EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeE
Q 010669          338 DLS--------S-----GI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVT  403 (504)
Q Consensus       338 d~~--------~-----~~-~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~  403 (504)
                      -..        +     .+ .+....   ..+|...+..++|+|+++++++|+.|..+++||+..|+....+..|...+.
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~---lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq  169 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKV---LRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ  169 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEE---ecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence            765        2     11 111111   236788999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee---------------------cCCCCCCeeEEEECCCCCEEEEEe
Q 010669          404 AISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE---------------------SSDSETPTNSVDFDHSGSYLAVAS  461 (504)
Q Consensus       404 ~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~---------------------~~~~~~~v~~i~~~~~g~~l~~~~  461 (504)
                      .++|.|-++++++-+.|. .+.+++...+.+....                     ..........++|+|+|..|++..
T Consensus       170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence            999999999999988886 6666654332221111                     000123456789999999998764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=7.5e-16  Score=154.90  Aligned_cols=214  Identities=16%  Similarity=0.139  Sum_probs=150.6

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCC---CcEEEEcCCCCce--EEEcccCccceeEEEEeeCCCEEEEEe-CCCcEEEE-
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVW-  292 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s-~dg~i~iw-  292 (504)
                      ..|...+.+..|+|||+.|+.++.+   ..|++||+.+++.  +..+.+|   ...++|+|||+.|+.++ .+|.+.|| 
T Consensus       200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~  276 (429)
T PRK01742        200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYV  276 (429)
T ss_pred             ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEE
Confidence            3466789999999999999887643   4699999988753  3444444   34689999999887764 68877666 


Q ss_pred             -eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCe-EEEEeecCCCCCCCCCeEEEEECCCC
Q 010669          293 -QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDG  369 (504)
Q Consensus       293 -d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~pdg  369 (504)
                       |+.++    ....+..+...+....|+|+|+.|+.++ .+|...+|++.... ....+.      +..  .+..|+|||
T Consensus       277 ~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~------~~~--~~~~~SpDG  344 (429)
T PRK01742        277 MGANGG----TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG------GRG--YSAQISADG  344 (429)
T ss_pred             EECCCC----CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec------CCC--CCccCCCCC
Confidence             44442    2344556777788999999999777655 57888888765322 122221      111  357899999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEc--CCCcceeeeecCCCCCCee
Q 010669          370 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL--RKLKNFRSFESSDSETPTN  446 (504)
Q Consensus       370 ~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~--~~~~~~~~~~~~~~~~~v~  446 (504)
                      +.|++.+.++ +.+||+.+++.......+  ....+.|+|||.+|+.++.++ +.+|++  .+++..+.+..+  .+.+.
T Consensus       345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~--~g~~~  419 (429)
T PRK01742        345 KTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS--DGQVK  419 (429)
T ss_pred             CEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC--CCCCC
Confidence            9998887765 556999888654322222  335678999999999998876 777765  356677777654  46688


Q ss_pred             EEEECCC
Q 010669          447 SVDFDHS  453 (504)
Q Consensus       447 ~i~~~~~  453 (504)
                      ..+|+|-
T Consensus       420 ~p~wsp~  426 (429)
T PRK01742        420 FPAWSPY  426 (429)
T ss_pred             CcccCCC
Confidence            8999884

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.71  E-value=1.9e-15  Score=151.35  Aligned_cols=252  Identities=18%  Similarity=0.167  Sum_probs=172.3

Q ss_pred             CCcEEEEcCCCC-ceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCC--ccee-EEeccCCcCeEEEEE
Q 010669          244 DTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN--YDCK-HTLKDHTAEVQAVTV  318 (504)
Q Consensus       244 dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~--~~~~-~~~~~h~~~v~~l~~  318 (504)
                      ++.+.||++.+. ..-..+. ....|+++.|+| +..+++.|..+|+|.+||+...+.  ...+ .....|..+|+.+.|
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            347999999876 3333333 567899999999 677889999999999999987643  1111 122368899999999


Q ss_pred             ccCC--CEEEEEeCCCeEEEEECCCCeEEEEeecC-------CCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCC
Q 010669          319 HATN--KYFVTASLDNTWCFYDLSSGICLTQVSDA-------GTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKS  388 (504)
Q Consensus       319 ~p~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~  388 (504)
                      ..+.  .-|++++.||.|..|+++.-.........       ........+++++|.+ +-..|++|+.+|.|.--+-..
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            7643  45999999999999988754432111100       0112335689999999 778899999999988744322


Q ss_pred             Cc--------eeeeeeCCCCCeEEEEEcCCCc-EEEEEeCCcEEEEEcC-CCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669          389 QA--------NVAKFDGHVGAVTAISFSENGY-YLATAAHDGVKLWDLR-KLKNFRSFESSDSETPTNSVDFDHSGSYLA  458 (504)
Q Consensus       389 ~~--------~~~~~~~~~~~i~~l~~s~~g~-~l~s~~~d~v~vwd~~-~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~  458 (504)
                      .+        ....+..|.++|+.+.++|=+. .+.++++.+|+||... ...++..+...  ...+++++|||...-++
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~--~~~v~~vaWSptrpavF  457 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS--PDYVTDVAWSPTRPAVF  457 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc--cceeeeeEEcCcCceEE
Confidence            21        2334556889999999999654 4445554459999987 55566555544  45699999999886555


Q ss_pred             EEeC-c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          459 VASA-D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       459 ~~~~-d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +... +  +.+||+..  ..-..+.+..-+  ....+.+.+++.|++
T Consensus       458 ~~~d~~G~l~iWDLl~--~~~~Pv~s~~~~--~~~l~~~~~s~~g~~  500 (555)
T KOG1587|consen  458 ATVDGDGNLDIWDLLQ--DDEEPVLSQKVC--SPALTRVRWSPNGKL  500 (555)
T ss_pred             EEEcCCCceehhhhhc--cccCCccccccc--ccccceeecCCCCcE
Confidence            5444 4  99999955  334445554443  445555666665654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.70  E-value=8.9e-16  Score=138.20  Aligned_cols=249  Identities=22%  Similarity=0.396  Sum_probs=177.2

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc-----eEEEcccCc------------cceeEEEEeeCCC--EEEEE
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-----IVTTLSGHS------------KKVTSVKFVTEGD--LFLTG  283 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~------------~~v~~l~~s~~~~--~l~s~  283 (504)
                      .+-|.++.|...|++|++|..+|.|.+|......     ....++.|.            ..|+.+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4568899999999999999999999999654322     334444454            4688999998665  57777


Q ss_pred             eCCCcEEEEeCCCCCCc--------------------------------ceeEEe-ccCCcCeEEEEEccCCCEEEEEeC
Q 010669          284 SADKTVRVWQGSEDGNY--------------------------------DCKHTL-KDHTAEVQAVTVHATNKYFVTASL  330 (504)
Q Consensus       284 s~dg~i~iwd~~~~~~~--------------------------------~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~  330 (504)
                      +.|.+|++|.+...+..                                .+.+.+ ..|.--|++|.++.|+..++++ .
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence            89999999986542210                                111112 2577789999999998888876 5


Q ss_pred             CCeEEEEECCCCeEEEEeecC---CCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCce------eee------
Q 010669          331 DNTWCFYDLSSGICLTQVSDA---GTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQAN------VAK------  394 (504)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~------~~~------  394 (504)
                      |=.|.+|+++-......+...   ....-...|++..||| ..+.|+-.++.|+|++.|+|....      +..      
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            678999998754333333221   1111224588999999 567888889999999999985321      111      


Q ss_pred             ----eeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEc-CCCcceeeeecCCC----------C---CCeeEEEECCCCCE
Q 010669          395 ----FDGHVGAVTAISFSENGYYLATAAHDGVKLWDL-RKLKNFRSFESSDS----------E---TPTNSVDFDHSGSY  456 (504)
Q Consensus       395 ----~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~-~~~~~~~~~~~~~~----------~---~~v~~i~~~~~g~~  456 (504)
                          |..--..|..+.|+++|+|+++-..-.|++||+ ...+++.++..|..          .   ..-..++|+.++.+
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~  343 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY  343 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence                111224689999999999999877777999999 45667777766532          1   12346889999999


Q ss_pred             EEEEeCc--EEEEEeecc
Q 010669          457 LAVASAD--IRVYQVASV  472 (504)
Q Consensus       457 l~~~~~d--i~vw~~~~~  472 (504)
                      +++|+..  .++|+...+
T Consensus       344 v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  344 VMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             EecccccceEEEecCCCC
Confidence            9999988  999996443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=7.5e-16  Score=138.65  Aligned_cols=186  Identities=18%  Similarity=0.306  Sum_probs=145.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCC
Q 010669          278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG  355 (504)
Q Consensus       278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  355 (504)
                      ..++++...|.|++||..++   +.+..++++...++.+.|..  ....+.+|+.||+|++||++.......+...+.  
T Consensus        41 ~~vav~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~--  115 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ--  115 (376)
T ss_pred             eeEEEEecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC--
Confidence            46888889999999999886   66778888888899999976  467899999999999999998877666653222  


Q ss_pred             CCCCeEEEEECCCCCEEEEEe----CCCcEEEEEcCCCce-eeee-eCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEc
Q 010669          356 RPEGYTSAAFHPDGLILGTGT----SEALVKIWDVKSQAN-VAKF-DGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDL  427 (504)
Q Consensus       356 ~~~~v~~~~~~pdg~~l~~g~----~dg~I~iwd~~~~~~-~~~~-~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~  427 (504)
                      ...+..|++....++++++|+    .+-.|.+||+|..+. +..+ ..|...|+++.|+| +..+|++|+.|| |.+||+
T Consensus       116 ~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  116 SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            125778888888899999986    367899999998766 5544 56999999999999 568999999999 999999


Q ss_pred             CCCcc----eeeeecCCCCCCeeEEEECCCC-CEEEEEeC-c-EEEEEeec
Q 010669          428 RKLKN----FRSFESSDSETPTNSVDFDHSG-SYLAVASA-D-IRVYQVAS  471 (504)
Q Consensus       428 ~~~~~----~~~~~~~~~~~~v~~i~~~~~g-~~l~~~~~-d-i~vw~~~~  471 (504)
                      .....    +..+.   +...|..+.|..++ +.+.+-+. . ..+|++..
T Consensus       196 ~~d~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~  243 (376)
T KOG1188|consen  196 KKDNEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED  243 (376)
T ss_pred             CCCcchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence            86532    22222   25679999999887 23444433 3 99999854

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=2e-14  Score=128.56  Aligned_cols=235  Identities=17%  Similarity=0.311  Sum_probs=168.8

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccc--eeEEEEeeCCCEEE-EEeCC------CcEEEEeC
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK--VTSVKFVTEGDLFL-TGSAD------KTVRVWQG  294 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~l~~s~~~~~l~-s~s~d------g~i~iwd~  294 (504)
                      ....+++|+.|...+++|..+| .+||+.+--+....-..+.+.  +..+-|  ..++|+ +||.+      +.|.|||=
T Consensus         6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence            3456699999999999998777 899987653332222222222  223333  334433 44433      47999993


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECC-CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                      ...   .++..+. ...+|.++.+.+  +.|++. ..+.|++|... +.+.+..+...   ..+.+..+++-+.+..+||
T Consensus        83 ~k~---~~i~el~-f~~~I~~V~l~r--~riVvv-l~~~I~VytF~~n~k~l~~~et~---~NPkGlC~~~~~~~k~~La  152 (346)
T KOG2111|consen   83 LKE---RCIIELS-FNSEIKAVKLRR--DRIVVV-LENKIYVYTFPDNPKLLHVIETR---SNPKGLCSLCPTSNKSLLA  152 (346)
T ss_pred             ccC---cEEEEEE-eccceeeEEEcC--CeEEEE-ecCeEEEEEcCCChhheeeeecc---cCCCceEeecCCCCceEEE
Confidence            332   5666653 568899999975  445544 35789999987 44555555422   2234455555555556666


Q ss_pred             E-EeCCCcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669          374 T-GTSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSETPTNSV  448 (504)
Q Consensus       374 ~-g~~dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~~~~~~~~~~~~~~v~~i  448 (504)
                      . |..-|.|+|-|+...+.  ...+..|.+.|.|++.+-+|..+|+++..|  |+|||..++..+..+........|.++
T Consensus       153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i  232 (346)
T KOG2111|consen  153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI  232 (346)
T ss_pred             cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence            5 44569999999977654  467788999999999999999999999998  999999999999988766556789999


Q ss_pred             EECCCCCEEEEEeCc--EEEEEeec
Q 010669          449 DFDHSGSYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       449 ~~~~~g~~l~~~~~d--i~vw~~~~  471 (504)
                      +|+|++.+|+++|+.  ++||.+..
T Consensus       233 aFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  233 AFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EeCCCccEEEEEcCCCeEEEEEeec
Confidence            999999999999987  99998844

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=4e-16  Score=146.46  Aligned_cols=269  Identities=20%  Similarity=0.296  Sum_probs=199.3

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEc-ccCccceeEEEEee--CCCEEEEEeCCCcEEEEeCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~--~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ...|.+-|..|.|+..|..|++|+.|..|.+||+..+.....+ .+|...|....|.|  +..-+++++.||.|++=.+.
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~  217 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL  217 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence            5678899999999999999999999999999999988776666 48999999999988  34569999999999998877


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCC---CCeEEEEECC-CCC
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP---EGYTSAAFHP-DGL  370 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~v~~~~~~p-dg~  370 (504)
                      ..+.......+..|.++|.-++.-|+. .-|.+++.|+.+.-+|++.+.....+...  ..+.   -....++.+| +..
T Consensus       218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr--~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR--EADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee--ccCCccceeeeeEecCCCCcc
Confidence            655444456677899999999999865 47899999999999999987655444321  1222   2678899999 455


Q ss_pred             EEEEEeCCCcEEEEEcCCCc------eeeeeeCC------CCCeEEEEEcCCCcEEEEEeCC-cEEEEEcCC--C-----
Q 010669          371 ILGTGTSEALVKIWDVKSQA------NVAKFDGH------VGAVTAISFSENGYYLATAAHD-GVKLWDLRK--L-----  430 (504)
Q Consensus       371 ~l~~g~~dg~I~iwd~~~~~------~~~~~~~~------~~~i~~l~~s~~g~~l~s~~~d-~v~vwd~~~--~-----  430 (504)
                      .+++|+.|..+++||.+.-.      .+..|..|      .-.|++++|+.++.-|.++-.| .|++|.-..  +     
T Consensus       296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~  375 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP  375 (559)
T ss_pred             ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence            89999999999999987532      23333322      3479999999776555555555 499995332  2     


Q ss_pred             -----ccee-eeecCCCCCCeeEEEE-CCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEE
Q 010669          431 -----KNFR-SFESSDSETPTNSVDF-DHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLF  495 (504)
Q Consensus       431 -----~~~~-~~~~~~~~~~v~~i~~-~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~  495 (504)
                           ..++ .+++|.....|..+-| -|...|+++|+.-  |.||+-    ++.+.|.-+.+-  ...|.||.
T Consensus       376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K----~t~eii~~MegD--r~VVNCLE  443 (559)
T KOG1334|consen  376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK----KTGEIIRFMEGD--RHVVNCLE  443 (559)
T ss_pred             CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec----chhHHHHHhhcc--cceEeccC
Confidence                 1122 3677766667888866 5677888888765  888985    556666555553  23555544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.68  E-value=2e-14  Score=128.80  Aligned_cols=256  Identities=16%  Similarity=0.218  Sum_probs=177.5

Q ss_pred             CeEEEEeccCCCEE-EEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCE-EEEEeCCCcEEEEeCCCCCCcce
Q 010669          225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       225 ~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      .|.-+.|..|..++ .....++.|.+|++...+-...+.....++.+++|||||+. |.+...|-.|.||.+.+.    .
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~----~  125 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ----K  125 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc----e
Confidence            46678888887754 45577889999999988888888888889999999999964 556678889999999874    2


Q ss_pred             eEEeccCCcCeEEEEEccCCCEEEEEeCC------------------------------------CeEEEEECCCCeEEE
Q 010669          303 KHTLKDHTAEVQAVTVHATNKYFVTASLD------------------------------------NTWCFYDLSSGICLT  346 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~d------------------------------------g~i~iwd~~~~~~~~  346 (504)
                      ..-+.-....+..++|+|+|++.+.+++-                                    ..+.+||---...+.
T Consensus       126 ~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~  205 (447)
T KOG4497|consen  126 GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY  205 (447)
T ss_pred             eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence            22333334557899999999988777531                                    234444432222222


Q ss_pred             EeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee--------------------------------
Q 010669          347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK--------------------------------  394 (504)
Q Consensus       347 ~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~--------------------------------  394 (504)
                      .+.      ..-++..++|+|.+++|++|+.|+.+||.+--+.++...                                
T Consensus       206 aYe------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf  279 (447)
T KOG4497|consen  206 AYE------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF  279 (447)
T ss_pred             eee------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence            221      124688999999999999999999998865322111100                                


Q ss_pred             ----------------------------ee------CCCCCeEEEEEcCCCcEEEEEeCC--c-EEEEEcCCCcceeeee
Q 010669          395 ----------------------------FD------GHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       395 ----------------------------~~------~~~~~i~~l~~s~~g~~l~s~~~d--~-v~vwd~~~~~~~~~~~  437 (504)
                                                  ++      .....+.-++|++|..++++-.+.  + +-+||+++.+....+.
T Consensus       280 ~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi  359 (447)
T KOG4497|consen  280 TPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI  359 (447)
T ss_pred             CCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh
Confidence                                        00      011246678999999999998876  4 9999999877655544


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      .   ..+|....|+|....|+.+...  +.+|..     .|......++.  .-.|..+.+..+|
T Consensus       360 Q---k~piraf~WdP~~prL~vctg~srLY~W~p-----sg~~~V~vP~~--GF~i~~l~W~~~g  414 (447)
T KOG4497|consen  360 Q---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAP-----SGPRVVGVPKK--GFNIQKLQWLQPG  414 (447)
T ss_pred             h---ccceeEEEeCCCCceEEEEcCCceEEEEcC-----CCceEEecCCC--CceeeeEEecCCC
Confidence            3   4689999999999888877666  666653     44443333332  3456666666555

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=4.2e-14  Score=141.94  Aligned_cols=231  Identities=11%  Similarity=0.098  Sum_probs=155.4

Q ss_pred             CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe---CCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC
Q 010669          245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS---ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT  321 (504)
Q Consensus       245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~  321 (504)
                      ..|.+||...... ..+..+...+.+.+|+|||+.|+..+   .+..|.+|++.++. ...+..+   .+.+....|+||
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~---~~~~~~~~~SPD  253 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASF---PRHNGAPAFSPD  253 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEccCC---CCCcCCeEECCC
Confidence            4688999875443 33444667899999999999887654   34578999987642 2222223   333556899999


Q ss_pred             CCEEEEE-eCCC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC-Cc--EEEEEcCCCceeeee
Q 010669          322 NKYFVTA-SLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-AL--VKIWDVKSQANVAKF  395 (504)
Q Consensus       322 ~~~l~s~-s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d-g~--I~iwd~~~~~~~~~~  395 (504)
                      |+.|+.. +.+|  .|++||+.++.......      +...+....|+|||+.|+..+.+ |.  |.++|+.++.. ..+
T Consensus       254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~l  326 (429)
T PRK03629        254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTD------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRI  326 (429)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEEEccC------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEe
Confidence            9988765 4455  58899999886543322      22356789999999988776654 44  45556665543 333


Q ss_pred             eCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-----EEE
Q 010669          396 DGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRV  466 (504)
Q Consensus       396 ~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-----i~v  466 (504)
                      ..+........|+|||++|+..+.+   . |.+||+.++.. ..+...   .......|+|||++|+.++.+     +.+
T Consensus       327 t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~  402 (429)
T PRK03629        327 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNL  402 (429)
T ss_pred             ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            3344456678999999998876543   2 88999987754 333321   223467899999999998876     344


Q ss_pred             EEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          467 YQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       467 w~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      +++     ++.....+.+|  .+.+...+|+|
T Consensus       403 ~~~-----~G~~~~~l~~~--~~~~~~p~Wsp  427 (429)
T PRK03629        403 VST-----DGRFKARLPAT--DGQVKFPAWSP  427 (429)
T ss_pred             EEC-----CCCCeEECccC--CCCcCCcccCC
Confidence            443     45666777777  66777777765

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=1.1e-14  Score=133.46  Aligned_cols=261  Identities=18%  Similarity=0.216  Sum_probs=188.4

Q ss_pred             CCeEEEEeccCCC--EEEEEeCCCcEEEEcCCCCceEEE------cccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          224 PGIVSLDIHYSKD--VIATGGVDTNAVLFDRPSGQIVTT------LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       224 ~~I~~~~~s~~~~--~l~sg~~dg~i~vwd~~~~~~~~~------~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ..|.+++|.-+++  .+...+.+..+..+......+...      .....++|..++..  ...|++|-.+|.+.+|...
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence            3567777776554  555555666777777666554433      23455667777653  3468888999999999987


Q ss_pred             CCCC-cceeEEeccCCcCeEEEEEccCCC-EEEEEeCC--CeEEEEECCCCeEEEEeecCCCC----CCCCCeEEEEECC
Q 010669          296 EDGN-YDCKHTLKDHTAEVQAVTVHATNK-YFVTASLD--NTWCFYDLSSGICLTQVSDAGTD----GRPEGYTSAAFHP  367 (504)
Q Consensus       296 ~~~~-~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~~p  367 (504)
                      .+.. ......+..+ ..+..+.-++... ++++|+..  ..+.+||++..+.+..-.....+    .-+-.++.+.|-+
T Consensus       134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~  212 (412)
T KOG3881|consen  134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE  212 (412)
T ss_pred             CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence            5321 1223333333 4566777776555 45558888  78999999998665544322110    1123567889998


Q ss_pred             C--CCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceee-eecCCCC
Q 010669          368 D--GLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS-FESSDSE  442 (504)
Q Consensus       368 d--g~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~-~~~~~~~  442 (504)
                      .  ...|++++.-+.+++||.+.+ +++..|.-...+++++...|.|+++++|...+ +..||+++++.... +...  .
T Consensus       213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--t  290 (412)
T KOG3881|consen  213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--T  290 (412)
T ss_pred             CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc--c
Confidence            7  889999999999999999876 57888887788999999999999999999988 99999999887766 5443  6


Q ss_pred             CCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEE
Q 010669          443 TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFL  496 (504)
Q Consensus       443 ~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~  496 (504)
                      +.++++..+|.+++++++|-|  +||||+    ++.+.+....-   ...++++-+
T Consensus       291 Gsirsih~hp~~~~las~GLDRyvRIhD~----ktrkll~kvYv---Ks~lt~il~  339 (412)
T KOG3881|consen  291 GSIRSIHCHPTHPVLASCGLDRYVRIHDI----KTRKLLHKVYV---KSRLTFILL  339 (412)
T ss_pred             CCcceEEEcCCCceEEeeccceeEEEeec----ccchhhhhhhh---hccccEEEe
Confidence            889999999999999999999  999998    55555544433   344555554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=1.5e-14  Score=149.46  Aligned_cols=247  Identities=16%  Similarity=0.183  Sum_probs=174.3

Q ss_pred             cCCCCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCCC-------ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669          220 KTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV  291 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~i  291 (504)
                      ..|++.|..++.++.. .++++||.||+|++|+...-       +...++..-...+.++.+.+.++.++.++.||.|++
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred             hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence            3467778888877654 89999999999999997531       223344445677899999999999999999999999


Q ss_pred             EeCCCC--CCc--ceeEEeccC-CcCeEEE-EEcc-CCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEE
Q 010669          292 WQGSED--GNY--DCKHTLKDH-TAEVQAV-TVHA-TNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA  363 (504)
Q Consensus       292 wd~~~~--~~~--~~~~~~~~h-~~~v~~l-~~~p-~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  363 (504)
                      .+++..  ...  .+......+ .+.+.++ +|.. .+. .++.+..-+.|..||++.......++.   ....+.|+++
T Consensus      1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~---~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN---QLRHGLVTSI 1201 (1431)
T ss_pred             EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc---CccccceeEE
Confidence            998762  111  111222222 2333333 3322 233 788888899999999998766655542   2344689999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCceeeeee-CCCCCeEEEEEcCC---CcEEEEEeC--Cc-EEEEEcCCCcceeee
Q 010669          364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSEN---GYYLATAAH--DG-VKLWDLRKLKNFRSF  436 (504)
Q Consensus       364 ~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~---g~~l~s~~~--d~-v~vwd~~~~~~~~~~  436 (504)
                      +.+|.+++++.|+..|.+.+||+|=+.++..+. ++..+|+.+..+|-   ....++++.  .+ |.+|++.++.+...+
T Consensus      1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             EecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence            999999999999999999999999888887775 35578888888762   355666555  35 999999988765555


Q ss_pred             ecCC-----------------CCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          437 ESSD-----------------SETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       437 ~~~~-----------------~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      -...                 .........+..-+.++.+|+.|  |+.||.
T Consensus      1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence            4320                 01112234444556788888888  999997

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.5e-15  Score=144.41  Aligned_cols=212  Identities=21%  Similarity=0.367  Sum_probs=151.4

Q ss_pred             EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe-ccCCcCeEEEEEcc--CCCEEEEEeCCCeE
Q 010669          258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL-KDHTAEVQAVTVHA--TNKYFVTASLDNTW  334 (504)
Q Consensus       258 ~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p--~~~~l~s~s~dg~i  334 (504)
                      ...+.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-.-   +.++.+ .+|...|.++.|-|  ++..+++|..|..|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhc---ceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            3568899999999999999999999999999999998754   444444 48999999999998  45689999999999


Q ss_pred             EEEECCCCeEEEEe-----ecCCCCCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCce----------eeeeeCC
Q 010669          335 CFYDLSSGICLTQV-----SDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQAN----------VAKFDGH  398 (504)
Q Consensus       335 ~iwd~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~pdg-~~l~~g~~dg~I~iwd~~~~~~----------~~~~~~~  398 (504)
                      ++||+...+.-..-     ...--..|...|..++..|++ +.|.++++||+|+-||+|....          +..+...
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            99999852211000     000012456678889999988 8999999999999999987421          1111222


Q ss_pred             CCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCc------------------ceeeeecCCC-------C---CCeeEE
Q 010669          399 VGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLK------------------NFRSFESSDS-------E---TPTNSV  448 (504)
Q Consensus       399 ~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~------------------~~~~~~~~~~-------~---~~v~~i  448 (504)
                      .-...|+.++|. .++|++|+.|- .++||.|...                  ++..+.....       .   ..++-+
T Consensus       200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV  279 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence            235778999994 67899999988 9999954211                  1222211100       0   125678


Q ss_pred             EECCCCCEEEE-EeCc-EEEEEeecc
Q 010669          449 DFDHSGSYLAV-ASAD-IRVYQVASV  472 (504)
Q Consensus       449 ~~~~~g~~l~~-~~~d-i~vw~~~~~  472 (504)
                      .|+|+|.-|++ -+.+ |.+|+++..
T Consensus       280 tfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             EECCCCcEEEEeeCCeEEEEEeecCC
Confidence            89999965554 4555 999999543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.66  E-value=1.9e-15  Score=143.45  Aligned_cols=171  Identities=19%  Similarity=0.289  Sum_probs=131.1

Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCCceEEEcc----cCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCC----------
Q 010669          233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSED----------  297 (504)
Q Consensus       233 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~----------  297 (504)
                      +.+--++.|-..|.|.+.|....+..+.+.    -....|+|+.|-| +...++.+-.+|.+.+||....          
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            445567778888999998876532222121    1346799999999 4456777888999999974321          


Q ss_pred             ----CCc-----------ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669          298 ----GNY-----------DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       298 ----~~~-----------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  362 (504)
                          ..+           .++..+.--.+.|..++|+|||++|++.+.||.++|||..+.+.+..++     ..-....|
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-----SYFGGLLC  337 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-----SYFGGLLC  337 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-----hhccceEE
Confidence                000           0111111223578899999999999999999999999999877665554     33467999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEc
Q 010669          363 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS  408 (504)
Q Consensus       363 ~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s  408 (504)
                      ++|+|||++|++|++|..|.||.+...+.+..-.+|.+.|+.|+|.
T Consensus       338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            9999999999999999999999999999999999999999999998

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.65  E-value=7.8e-17  Score=117.44  Aligned_cols=52  Identities=37%  Similarity=0.677  Sum_probs=43.7

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~   53 (504)
                      |.|+|||++|.+||++| +|++|||..|++||++ +++||+|+++|+.++|+|-
T Consensus         5 f~CpIt~~lM~dPVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn   57 (73)
T PF04564_consen    5 FLCPITGELMRDPVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN   57 (73)
T ss_dssp             GB-TTTSSB-SSEEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred             cCCcCcCcHhhCceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence            57999999999999997 8999999999999999 6789999999999999886

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=3.7e-14  Score=135.86  Aligned_cols=259  Identities=15%  Similarity=0.216  Sum_probs=184.7

Q ss_pred             CCCCeEEEEeccCCCEE-EEEeCCCcEEEEcCCCCceEEEcccCc--cceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          222 SKPGIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHS--KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      +...-+.|..+|||+|+ ++|.....|++||+.+-.+  .|..|.  ..|.-.-.+.|-..++.-..|.+|-+...-.  
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--  125 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--  125 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcC--
Confidence            34556789999999964 6777889999999976543  333333  3344444454555566667777776653221  


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                         ....+. -...-.++++|.-.--|++++....|+-++++.|..+..+..     ....++++..++-..+|++|+.+
T Consensus       126 ---~hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-----~~~~lN~v~in~~hgLla~Gt~~  196 (703)
T KOG2321|consen  126 ---RHYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-----DSGELNVVSINEEHGLLACGTED  196 (703)
T ss_pred             ---eeeeee-cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-----ccccceeeeecCccceEEecccC
Confidence               111111 112335667765444455556667799999999988877752     23679999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeee------CCCC-----CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCee
Q 010669          379 ALVKIWDVKSQANVAKFD------GHVG-----AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN  446 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~------~~~~-----~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~  446 (504)
                      |.|.+||.|....+..+.      .|.+     .|+++.|+.+|-.+++|+..| |.|||+|..+++..- .|....+|.
T Consensus       197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~  275 (703)
T KOG2321|consen  197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIK  275 (703)
T ss_pred             ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCcccee
Confidence            999999999877665553      2333     499999999999999999999 999999998876543 444567899


Q ss_pred             EEEECCC--CCEEEEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          447 SVDFDHS--GSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       447 ~i~~~~~--g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      .+.|.+.  ++.|++.... ++||+-    .+++....+..   ...+..++++|++-
T Consensus       276 ~l~~~~~~~q~~v~S~Dk~~~kiWd~----~~Gk~~asiEp---t~~lND~C~~p~sG  326 (703)
T KOG2321|consen  276 KLDWQDTDQQNKVVSMDKRILKIWDE----CTGKPMASIEP---TSDLNDFCFVPGSG  326 (703)
T ss_pred             eecccccCCCceEEecchHHhhhccc----ccCCceeeccc---cCCcCceeeecCCc
Confidence            9999776  4566666665 999996    66777777655   45688888888763

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=1.4e-14  Score=137.63  Aligned_cols=222  Identities=15%  Similarity=0.223  Sum_probs=151.5

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCce----EEEcccCccceeEEEEe-----eCCCEEEEEeCCCcEEEEeCCC
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI----VTTLSGHSKKVTSVKFV-----TEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~l~~s-----~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      +....++-.|++|+-.- ...+++|+...+..    +....-.....+|-.|.     +.+--++.|-.-|.|.+.|...
T Consensus       126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~  204 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN  204 (636)
T ss_pred             eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence            44455555667666543 23588888764321    11111111223444442     3455688888889999998765


Q ss_pred             CCCcceeEEe--ccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCC--------------CeEEEEeecCCC------
Q 010669          297 DGNYDCKHTL--KDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSS--------------GICLTQVSDAGT------  353 (504)
Q Consensus       297 ~~~~~~~~~~--~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~--------------~~~~~~~~~~~~------  353 (504)
                      . ....+...  .-....|+++.|-|.+ ..|+.+-.+|.+++||..-              +...........      
T Consensus       205 ~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv  283 (636)
T KOG2394|consen  205 F-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV  283 (636)
T ss_pred             h-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence            2 11111111  1134689999999854 4677777899999997631              111111110000      


Q ss_pred             ---CCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC
Q 010669          354 ---DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK  429 (504)
Q Consensus       354 ---~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~  429 (504)
                         ......|..++|+|||++||+.+.||.+||||..+.+.+..++..-+...|++|||||+||++|++|. |.||.+..
T Consensus       284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e  363 (636)
T KOG2394|consen  284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE  363 (636)
T ss_pred             ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence               01134688999999999999999999999999999888888877778999999999999999999999 99999999


Q ss_pred             CcceeeeecCCCCCCeeEEEEC
Q 010669          430 LKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       430 ~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      .+.+..-.+|  ..+|..++|+
T Consensus       364 rRVVARGqGH--kSWVs~VaFD  383 (636)
T KOG2394|consen  364 RRVVARGQGH--KSWVSVVAFD  383 (636)
T ss_pred             ceEEEecccc--ccceeeEeec
Confidence            8888766655  7899999998

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.64  E-value=1.8e-14  Score=139.28  Aligned_cols=207  Identities=19%  Similarity=0.308  Sum_probs=160.8

Q ss_pred             eEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCcc---eeEEeccCCcCeEEEEEccCCCEEEEEeCCC
Q 010669          257 IVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYD---CKHTLKDHTAEVQAVTVHATNKYFVTASLDN  332 (504)
Q Consensus       257 ~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg  332 (504)
                      .+..+.+|...|+.+.|+| +..+|++|+.|..|+||.+..+....   ....+.+..-.|.++.|||...-|+..+..|
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g  150 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG  150 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence            4566789999999999999 55689999999999999988532211   1122333445789999999887777777889


Q ss_pred             eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeCCCC-CeEEEEEcCC
Q 010669          333 TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVG-AVTAISFSEN  410 (504)
Q Consensus       333 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~-~~~~~~~~~~~~-~i~~l~~s~~  410 (504)
                      ++++||+.+++....+.     +|...|.++.|+.||.++++++.|..|+|||.|. ++++....+|.+ .=..+.|.-+
T Consensus       151 ~v~i~D~stqk~~~el~-----~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn  225 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELS-----GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGN  225 (1012)
T ss_pred             eEEEEEcccCceeeccc-----CCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccc
Confidence            99999999998887765     7888999999999999999999999999999986 577888888865 3345788766


Q ss_pred             CcEEEEEeCC----c-EEEEEcCCCc-ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669          411 GYYLATAAHD----G-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV  469 (504)
Q Consensus       411 g~~l~s~~~d----~-v~vwd~~~~~-~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~  469 (504)
                      -..|++.+-+    . |++||.++.. .++++.... ...|.---|+||.++|+-+|..   +..+.+
T Consensus       226 ~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~-stGvLiPl~DpDt~llfLaGKG~~~l~~lE~  292 (1012)
T KOG1445|consen  226 WERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDS-STGVLIPLYDPDTRLLFLAGKGTNKLFMLEM  292 (1012)
T ss_pred             hhhhhhcccchhhheeeeeeeccccCCcceeEEeec-ccceEeeeecCCCceEEEecCCcceEEEEEe
Confidence            5577776655    2 9999999754 455555432 4567777899999988877765   555555

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.63  E-value=2.1e-12  Score=126.02  Aligned_cols=263  Identities=13%  Similarity=0.202  Sum_probs=172.3

Q ss_pred             CeEEEEeccCCCEEEEEeC----CCcEEEEcCCCC--c--eEEEcccCccceeEEEEeeCCCEEEEEe-CCCcEEEEeCC
Q 010669          225 GIVSLDIHYSKDVIATGGV----DTNAVLFDRPSG--Q--IVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGS  295 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~----dg~i~vwd~~~~--~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s-~dg~i~iwd~~  295 (504)
                      ....++++|++++|.+...    +|.|..|++...  +  .+............++++|++++|+++. .+|+|.++++.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            3456888999999888866    578999987653  2  3333333344567799999999988887 48999999998


Q ss_pred             CCCCcceeEEec-----------cCCcCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCe--EEE--EeecCCCCCCCCC
Q 010669          296 EDGNYDCKHTLK-----------DHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGI--CLT--QVSDAGTDGRPEG  359 (504)
Q Consensus       296 ~~~~~~~~~~~~-----------~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~--~~~--~~~~~~~~~~~~~  359 (504)
                      ..+.........           .......++.|+|+++++++... ...|.+|++....  ...  .+..    .....
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~----~~G~G  193 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV----PPGSG  193 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC----STTSS
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc----ccCCC
Confidence            754332221111           12245789999999998888754 3479999997655  222  2221    22356


Q ss_pred             eEEEEECCCCCEEEEEe-CCCcEEEEEcC--CCc--eeeeeeC----C--CCCeEEEEEcCCCcEEEEEeCCc--EEEEE
Q 010669          360 YTSAAFHPDGLILGTGT-SEALVKIWDVK--SQA--NVAKFDG----H--VGAVTAISFSENGYYLATAAHDG--VKLWD  426 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~-~dg~I~iwd~~--~~~--~~~~~~~----~--~~~i~~l~~s~~g~~l~s~~~d~--v~vwd  426 (504)
                      ...+.|+|+|+++++.+ .++.|.+|++.  .+.  .+..+..    .  ......|.++|||++|+++..+.  |.+|+
T Consensus       194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~  273 (345)
T PF10282_consen  194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD  273 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred             CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence            88999999999876655 57889999987  332  2222221    1  12578899999999999887663  99999


Q ss_pred             cCC--Cc--ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEE
Q 010669          427 LRK--LK--NFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFL  496 (504)
Q Consensus       427 ~~~--~~--~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~  496 (504)
                      +..  ++  .+..+...  ....+.+.++|+|++|++++.+   |.+|+++..+...........   .....||.|
T Consensus       274 ~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~---~~~p~ci~f  345 (345)
T PF10282_consen  274 LDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVP---IPSPVCIVF  345 (345)
T ss_dssp             ECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEE---SSSEEEEEE
T ss_pred             EecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccccc---CCCCEEEeC
Confidence            942  32  23333332  3458999999999999999865   999998654444444443211   335566654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.63  E-value=5.4e-14  Score=145.49  Aligned_cols=220  Identities=22%  Similarity=0.289  Sum_probs=164.2

Q ss_pred             EcCCCCceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCCC----CCcceeEEeccCCcCeEEEEEccCCCE
Q 010669          250 FDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSED----GNYDCKHTLKDHTAEVQAVTVHATNKY  324 (504)
Q Consensus       250 wd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~~p~~~~  324 (504)
                      |+.+ |..+..+..|...|..++.++. +.++++||.||+|++|+...-    +..+...++..-...+.++.+.+.++.
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            6654 7889999999999999998874 489999999999999997642    233444555545678999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeEEE----EeecCCCCCCCCCeEEEEECC-CCC-EEEEEeCCCcEEEEEcCCCceeeeee--
Q 010669          325 FVTASLDNTWCFYDLSSGICLT----QVSDAGTDGRPEGYTSAAFHP-DGL-ILGTGTSEALVKIWDVKSQANVAKFD--  396 (504)
Q Consensus       325 l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~~p-dg~-~l~~g~~dg~I~iwd~~~~~~~~~~~--  396 (504)
                      +++++.||.|.+.+++..+...    .............+..-+|.. ++. .++.+...+.|..||+++.....+++  
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            9999999999999987621111    111111112222344444444 334 78888899999999999876655543  


Q ss_pred             CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC---CEEEEEeC---c-EEEEE
Q 010669          397 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG---SYLAVASA---D-IRVYQ  468 (504)
Q Consensus       397 ~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g---~~l~~~~~---d-i~vw~  468 (504)
                      ...|.|++++.+|.+.+++.|+..| +.+||+|-+.++..+..+. ..++..+..+|-.   .+.++++.   + +.+|+
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcc-cCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            3457999999999999999999999 9999999988888887665 4788888877643   46666554   2 99999


Q ss_pred             eec
Q 010669          469 VAS  471 (504)
Q Consensus       469 ~~~  471 (504)
                      +..
T Consensus      1272 ~~~ 1274 (1431)
T KOG1240|consen 1272 MET 1274 (1431)
T ss_pred             ccc
Confidence            944

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.7e-13  Score=137.60  Aligned_cols=215  Identities=11%  Similarity=0.065  Sum_probs=145.5

Q ss_pred             CCCCeEEEEeccCCCEEEEEe---CCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEE-eCCC--cEEEEeCC
Q 010669          222 SKPGIVSLDIHYSKDVIATGG---VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADK--TVRVWQGS  295 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-s~dg--~i~iwd~~  295 (504)
                      +...+.+.+|+|||+.|+..+   .+..+++|++.+++... +....+.+....|+|||+.|+.. +.+|  .|.+||+.
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~  275 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  275 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            456789999999999887654   34579999998875432 22233335578999999987754 4455  48889987


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC-C--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-N--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      ++   . ...+..+...+....|+|+|+.|+.++.+ +  .|.++|+.++... .+..     .........|+|||+++
T Consensus       276 tg---~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-----~~~~~~~~~~SpDG~~I  345 (429)
T PRK03629        276 SG---Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-----EGSQNQDADVSSDGKFM  345 (429)
T ss_pred             CC---C-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-----CCCCccCEEECCCCCEE
Confidence            64   2 23344444567889999999988777654 4  4555577766543 2221     11235678999999998


Q ss_pred             EEEeCC---CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc----EEEEEcCCCcceeeeecCCCCCCe
Q 010669          373 GTGTSE---ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPT  445 (504)
Q Consensus       373 ~~g~~d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~----v~vwd~~~~~~~~~~~~~~~~~~v  445 (504)
                      +..+.+   ..|.+||+.++... .+... .......|+|||.+|+.++.++    +.++++. +.....+..+  ...+
T Consensus       346 a~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~--~~~~  420 (429)
T PRK03629        346 VMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT--DGQV  420 (429)
T ss_pred             EEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccC--CCCc
Confidence            876543   35888999877643 33221 2234678999999999888763    6777874 5555556543  4567


Q ss_pred             eEEEECC
Q 010669          446 NSVDFDH  452 (504)
Q Consensus       446 ~~i~~~~  452 (504)
                      ...+|+|
T Consensus       421 ~~p~Wsp  427 (429)
T PRK03629        421 KFPAWSP  427 (429)
T ss_pred             CCcccCC
Confidence            8888887

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2.5e-13  Score=136.60  Aligned_cols=263  Identities=15%  Similarity=0.202  Sum_probs=192.1

Q ss_pred             EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE----EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC-CCCcc
Q 010669          227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-DGNYD  301 (504)
Q Consensus       227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~----~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~  301 (504)
                      .++.+++.|.+....-. ..+.+|+...+....    .-..|.-.+++.++||+++++++|..||.|.+|.--. .+.-.
T Consensus       164 ~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~  242 (792)
T KOG1963|consen  164 KSIVDNNSGEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE  242 (792)
T ss_pred             ccEEEcCCceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence            46777888887666654 468888877654211    1124777799999999999999999999999996433 12223


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      ....+.-|...|.++.|+++|.+|++|+..|.+.+|.+.+++. .-+.     .-.++|..+.++||+.+.+....|+.|
T Consensus       243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP-----RLgs~I~~i~vS~ds~~~sl~~~DNqI  316 (792)
T KOG1963|consen  243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP-----RLGSPILHIVVSPDSDLYSLVLEDNQI  316 (792)
T ss_pred             cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-cccc-----ccCCeeEEEEEcCCCCeEEEEecCceE
Confidence            3455667889999999999999999999999999999999872 2222     234689999999999999999999999


Q ss_pred             EEEEcCCCceeeeeeC-----------CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC---C-----
Q 010669          382 KIWDVKSQANVAKFDG-----------HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD---S-----  441 (504)
Q Consensus       382 ~iwd~~~~~~~~~~~~-----------~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~---~-----  441 (504)
                      .+....+.....++.+           ..+-.+.++++|.-..++-.+..+ |.+||+.+...+..+....   +     
T Consensus       317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n  396 (792)
T KOG1963|consen  317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN  396 (792)
T ss_pred             EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence            9998765543333322           234567889999666677777777 9999998877666554321   1     


Q ss_pred             -CCCeeEEEECCCCCEEEEEeC--------c----EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669          442 -ETPTNSVDFDHSGSYLAVASA--------D----IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       442 -~~~v~~i~~~~~g~~l~~~~~--------d----i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~  497 (504)
                       .-.++.++.+-.|+++++.-.        |    +++|.++...++|.+...+..- |...+....|+
T Consensus       397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~P-H~~~~vat~~~  464 (792)
T KOG1963|consen  397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNP-HGNAFVATIFL  464 (792)
T ss_pred             eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecC-CCceeEEEEEe
Confidence             124677888888999998731        1    8999999988999987766532 23334443333

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.2e-13  Score=139.23  Aligned_cols=233  Identities=14%  Similarity=0.068  Sum_probs=153.1

Q ss_pred             CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC
Q 010669          245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT  321 (504)
Q Consensus       245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~  321 (504)
                      ..|.+||... .....+..+...+.+..|+|||+.|+.++.+   ..|.+||+.++.   . ..+..+.+...+..|+|+
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---~-~~l~~~~g~~~~~~~SpD  258 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---R-ELVASFRGINGAPSFSPD  258 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---E-EEeccCCCCccCceECCC
Confidence            4688999854 4445566677789999999999988877643   469999997642   1 223334445567899999


Q ss_pred             CCEEE-EEeCCC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CCc--EEEEEcCCCceeeee
Q 010669          322 NKYFV-TASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EAL--VKIWDVKSQANVAKF  395 (504)
Q Consensus       322 ~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg~--I~iwd~~~~~~~~~~  395 (504)
                      |+.++ +.+.+|  .|++||+.++.... +.     .+.......+|+|||+.|+.++. +|.  |+++|+.+++.. .+
T Consensus       259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-----~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~l  331 (433)
T PRK04922        259 GRRLALTLSRDGNPEIYVMDLGSRQLTR-LT-----NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RL  331 (433)
T ss_pred             CCEEEEEEeCCCCceEEEEECCCCCeEE-Cc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee
Confidence            99775 445555  59999999886533 32     22234567899999998887664 444  666777666533 22


Q ss_pred             eCCCCCeEEEEEcCCCcEEEEEeCC-c---EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEE
Q 010669          396 DGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQ  468 (504)
Q Consensus       396 ~~~~~~i~~l~~s~~g~~l~s~~~d-~---v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~  468 (504)
                      ..+.......+|+|+|++|+..+.+ +   |.+||+.+++.. .+..   ........|+|+|++++..+.+   ..||-
T Consensus       332 t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~  407 (433)
T PRK04922        332 TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAA  407 (433)
T ss_pred             ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            2233345578999999998876533 2   899999877643 3322   1234567899999998877664   44554


Q ss_pred             eeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          469 VASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       469 ~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      ++.   .+.....+..+  .+.+...+++|
T Consensus       408 ~~~---~g~~~~~l~~~--~g~~~~p~wsp  432 (433)
T PRK04922        408 VST---DGRVRQRLVSA--DGEVREPAWSP  432 (433)
T ss_pred             EEC---CCCceEEcccC--CCCCCCCccCC
Confidence            422   33445555544  45566666554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=6.5e-14  Score=128.15  Aligned_cols=247  Identities=14%  Similarity=0.201  Sum_probs=178.7

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc--CccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG--HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      -..|.+.|.|++|......+++|+.+|+|...|+++.+.+..+..  ..+.|..+..+|..+.|++.+.+|.|.+||...
T Consensus       101 ~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd  180 (609)
T KOG4227|consen  101 EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD  180 (609)
T ss_pred             cCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence            345778999999999999999999999999999999888776652  235899999999999999999999999999987


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeec--CCCCCCCCCeEEEEECCCCCEEE
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSD--AGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                      ..+.....-..........+.|+|.. .+|++.+..+.+.+||++..........  .++.........+.|+|+|+.|+
T Consensus       181 ~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m  260 (609)
T KOG4227|consen  181 RQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM  260 (609)
T ss_pred             CCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh
Confidence            54322222233445567889999954 5788888999999999986543211110  01111122346789999999988


Q ss_pred             EEeCCCcEEEEEcCCCce-eeeeeCCC-------CCeEEEEEcCCCcEEEEEeCC-cEEEEEcCCCc-------------
Q 010669          374 TGTSEALVKIWDVKSQAN-VAKFDGHV-------GAVTAISFSENGYYLATAAHD-GVKLWDLRKLK-------------  431 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~-~~~~~~~~-------~~i~~l~~s~~g~~l~s~~~d-~v~vwd~~~~~-------------  431 (504)
                      +--....-.+||+-+..+ +..+. |+       ..+.+++|..+ +.+++|+++ +|++|.+....             
T Consensus       261 siRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~  338 (609)
T KOG4227|consen  261 SIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEE  338 (609)
T ss_pred             hhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchh
Confidence            876666677889877443 44443 22       25667888744 458888888 59999875311             


Q ss_pred             ----------ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          432 ----------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       432 ----------~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                                .+..+.+|  ..-++.+.|+|...+|++.|-.  ++||.-
T Consensus       339 ~~~~~~~i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  339 EMPSEIFIEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             hCchhheecceeEEEecc--cccccceeecCCcceEeccchhhheecccc
Confidence                      11223333  5678899999998888887766  999964

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.62  E-value=1.2e-14  Score=126.51  Aligned_cols=230  Identities=15%  Similarity=0.178  Sum_probs=166.4

Q ss_pred             EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec-cCCcCeEEEEEccCCCEEEEEeCCCeEEE
Q 010669          258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCF  336 (504)
Q Consensus       258 ~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~i  336 (504)
                      ...+.+|.+.|+++.|..++. |++|..-|.|++|++.+.   .....+. .|...|+.+..-|+ ..+.+-+.|+.+.+
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~---r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE---RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL   81 (323)
T ss_pred             eeEeccccchheehhhccchh-hhcccccceEEEEEeecC---ccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence            445668999999999987665 899999999999999885   3444445 56678888888876 67888899999999


Q ss_pred             EECCCCeEEEEe--------------ecCC----------------------------------CCCCCCCeEEEEECC-
Q 010669          337 YDLSSGICLTQV--------------SDAG----------------------------------TDGRPEGYTSAAFHP-  367 (504)
Q Consensus       337 wd~~~~~~~~~~--------------~~~~----------------------------------~~~~~~~v~~~~~~p-  367 (504)
                      |++.-+..+...              ....                                  ..+..+.+.|..+.- 
T Consensus        82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~  161 (323)
T KOG0322|consen   82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA  161 (323)
T ss_pred             EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence            998753222110              0000                                  001123345555333 


Q ss_pred             CC--CEEEEEeCCCcEEEEEcCCCceee----------eeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC--cc
Q 010669          368 DG--LILGTGTSEALVKIWDVKSQANVA----------KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KN  432 (504)
Q Consensus       368 dg--~~l~~g~~dg~I~iwd~~~~~~~~----------~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~--~~  432 (504)
                      ++  -++++|.++|.+.+||+.++..+.          ....|..+|.++.|.+.-..=++|+.+. +..|++...  ..
T Consensus       162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl  241 (323)
T KOG0322|consen  162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL  241 (323)
T ss_pred             ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence            23  356788999999999999874433          3345889999999987544445566554 888887643  22


Q ss_pred             e--eeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          433 F--RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       433 ~--~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      .  ..+...  +-.+..+.+-||++++|++|.|  ||||.+    ++.+.+..+.-|  .+.|.+++|+|+.
T Consensus       242 q~~~e~~lk--npGv~gvrIRpD~KIlATAGWD~RiRVysw----rtl~pLAVLkyH--sagvn~vAfspd~  305 (323)
T KOG0322|consen  242 QIRKEITLK--NPGVSGVRIRPDGKILATAGWDHRIRVYSW----RTLNPLAVLKYH--SAGVNAVAFSPDC  305 (323)
T ss_pred             cccceEEec--CCCccceEEccCCcEEeecccCCcEEEEEe----ccCCchhhhhhh--hcceeEEEeCCCC
Confidence            1  112221  4568889999999999999999  999999    889999999999  7899999999984

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.7e-13  Score=137.74  Aligned_cols=234  Identities=16%  Similarity=0.125  Sum_probs=149.8

Q ss_pred             CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC
Q 010669          245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT  321 (504)
Q Consensus       245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~  321 (504)
                      ..|.++|.. +.....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.++.   . ..+....+.+....|+|+
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---~-~~l~~~~g~~~~~~~SPD  250 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---R-RVVANFKGSNSAPAWSPD  250 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---E-EEeecCCCCccceEECCC
Confidence            467788874 44445555677889999999999988877643   359999998752   2 223333455678999999


Q ss_pred             CCEEE-EEeCCCeEEEE--ECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEc--CCCceeeee
Q 010669          322 NKYFV-TASLDNTWCFY--DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EALVKIWDV--KSQANVAKF  395 (504)
Q Consensus       322 ~~~l~-s~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg~I~iwd~--~~~~~~~~~  395 (504)
                      |+.|+ +.+.+|...+|  |+.++. ...+.     .+........|+|||+.|+..+. +|...||.+  ..+.. ..+
T Consensus       251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-----~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~l  323 (427)
T PRK02889        251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLT-----QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRV  323 (427)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCC-cEECC-----CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEE
Confidence            99876 46777776655  454443 33332     22234566789999998876554 466666655  34432 222


Q ss_pred             eCCCCCeEEEEEcCCCcEEEEEeCC-c---EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEE
Q 010669          396 DGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQ  468 (504)
Q Consensus       396 ~~~~~~i~~l~~s~~g~~l~s~~~d-~---v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~  468 (504)
                      ..+........|+|||++|+..+.+ +   |.+||+.+++.. .+...   .......|+|+|++|+.++.+   -.+|-
T Consensus       324 t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~  399 (427)
T PRK02889        324 TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT---TRDESPSFAPNGRYILYATQQGGRSVLAA  399 (427)
T ss_pred             ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC---CCccCceECCCCCEEEEEEecCCCEEEEE
Confidence            2222334567899999999876644 2   999999877643 23221   234678999999999988765   34454


Q ss_pred             eeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          469 VASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       469 ~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      ++.   .+.....+..+  .+.+...+++|-
T Consensus       400 ~~~---~g~~~~~l~~~--~g~~~~p~wsp~  425 (427)
T PRK02889        400 VSS---DGRIKQRLSVQ--GGDVREPSWGPF  425 (427)
T ss_pred             EEC---CCCceEEeecC--CCCCCCCccCCC
Confidence            422   34445555544  456666666653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=5.3e-13  Score=134.73  Aligned_cols=202  Identities=14%  Similarity=0.125  Sum_probs=142.0

Q ss_pred             CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC---CCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC
Q 010669          245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT  321 (504)
Q Consensus       245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~  321 (504)
                      ..|.++|.. +.....+..|...+.+..|+|||+.|+..+.   +..|.+||+.++.    ...+..+.+.+....|+|+
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~----~~~l~~~~g~~~~~~~SPD  256 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ----RELVGNFPGMTFAPRFSPD  256 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc----EEEeecCCCcccCcEECCC
Confidence            478889975 4445566678889999999999998887653   4689999997742    2334455667788999999


Q ss_pred             CCEEE-EEeCCCe--EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeeee
Q 010669          322 NKYFV-TASLDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKF  395 (504)
Q Consensus       322 ~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg--~I~iwd~~~~~~~~~~  395 (504)
                      |+.|+ +.+.++.  |++||+.++.... +.     .+........|+|||+.|+..+. +|  .|++||+..+.. ..+
T Consensus       257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-----~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~l  329 (435)
T PRK05137        257 GRKVVMSLSQGGNTDIYTMDLRSGTTTR-LT-----DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRI  329 (435)
T ss_pred             CCEEEEEEecCCCceEEEEECCCCceEE-cc-----CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEe
Confidence            98775 5555554  7788998876533 32     22334567899999998887664 33  688888866544 333


Q ss_pred             eCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669          396 DGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA  462 (504)
Q Consensus       396 ~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~  462 (504)
                      ..+.+.+....|+|+|.+|+..+.+   . |.+||+..+. ...+..   ...+..+.|+|||+.|+..+.
T Consensus       330 t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        330 SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEc
Confidence            3344556778999999999877543   2 8888975543 333322   224677899999999887654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=1.7e-13  Score=137.75  Aligned_cols=219  Identities=15%  Similarity=0.131  Sum_probs=146.8

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCC---CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEEeCCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSE  296 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~~~  296 (504)
                      .+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+.+..|+|||+.|+ +.+.+|...||.++.
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  271 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA  271 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence            456778999999999988877643   459999998886543 333345567899999998776 567788877776543


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CCeEEEEE--CCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYD--LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                      .+  .....+..+........|+|||+.|+..+. +|...+|.  +.++....... .   +  ......+|+|||++++
T Consensus       272 ~~--~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~-~---g--~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        272 DG--SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF-T---G--SYNTSPRISPDGKLLA  343 (427)
T ss_pred             CC--CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec-C---C--CCcCceEECCCCCEEE
Confidence            22  223445555555677899999998876654 45556664  44544322221 1   1  2234578999999998


Q ss_pred             EEeCCC---cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc----EEEEEcCCCcceeeeecCCCCCCee
Q 010669          374 TGTSEA---LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPTN  446 (504)
Q Consensus       374 ~g~~dg---~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~----v~vwd~~~~~~~~~~~~~~~~~~v~  446 (504)
                      ..+.++   .|.+||+.+++......  ........|+|||++|+.++.++    +.+.++ ++.....+..+  .+.+.
T Consensus       344 ~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~--~g~~~  418 (427)
T PRK02889        344 YISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ--GGDVR  418 (427)
T ss_pred             EEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecC--CCCCC
Confidence            776554   69999998876443222  22346789999999988877552    666666 35555555433  45677


Q ss_pred             EEEECCC
Q 010669          447 SVDFDHS  453 (504)
Q Consensus       447 ~i~~~~~  453 (504)
                      ..+|+|-
T Consensus       419 ~p~wsp~  425 (427)
T PRK02889        419 EPSWGPF  425 (427)
T ss_pred             CCccCCC
Confidence            7788874

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.61  E-value=6.5e-15  Score=131.93  Aligned_cols=229  Identities=18%  Similarity=0.248  Sum_probs=163.2

Q ss_pred             EEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCCcceeEEe
Q 010669          228 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDCKHTL  306 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~  306 (504)
                      -++|||+|+++|+.+.- .+.|-|..+-+..+.+. .-..|.-+.|..|..+++ ....|+.|.+|++...   .-...+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew~ckI   87 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EWYCKI   87 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecc---eeEEEe
Confidence            46799999999999865 77788877666544443 245688899998777644 5577889999999874   334455


Q ss_pred             ccCCcCeEEEEEccCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 010669          307 KDHTAEVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD  385 (504)
Q Consensus       307 ~~h~~~v~~l~~~p~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd  385 (504)
                      .....++.+++|+|+|+.| .+...|-.|.+|.+.+.+......      ....+..++|+|||++.+..+.-.....++
T Consensus        88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~  161 (447)
T KOG4497|consen   88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQ  161 (447)
T ss_pred             ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc------cccCceeEEECCCCceeeeeecccHHHHHH
Confidence            6667889999999999655 556668899999999876654332      123568899999999998887643322222


Q ss_pred             c---CCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669          386 V---KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA  462 (504)
Q Consensus       386 ~---~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~  462 (504)
                      +   +....+..|+...-..+.+.|+|||..|++        ||---.-.+..+..   ...+..++|+|.+++|++|+.
T Consensus       162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV--------wd~~Leykv~aYe~---~lG~k~v~wsP~~qflavGsy  230 (447)
T KOG4497|consen  162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV--------WDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAVGSY  230 (447)
T ss_pred             HHhhHHHHHHHhcCCCcccccCceECCCCcEEEE--------ecchhhheeeeeee---ccceeEEEeccccceEEeecc
Confidence            2   233455666666667899999999988765        44221111112222   357889999999999999999


Q ss_pred             c--EEEEEeeccCccceeEEEc
Q 010669          463 D--IRVYQVASVKADWNCIKTF  482 (504)
Q Consensus       463 d--i~vw~~~~~~~~~~~i~~~  482 (504)
                      |  ++|-+-    -+|+.+..|
T Consensus       231 D~~lrvlnh----~tWk~f~ef  248 (447)
T KOG4497|consen  231 DQMLRVLNH----FTWKPFGEF  248 (447)
T ss_pred             chhhhhhce----eeeeehhhh
Confidence            9  887764    567766655

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.61  E-value=1e-15  Score=142.86  Aligned_cols=224  Identities=16%  Similarity=0.233  Sum_probs=175.4

Q ss_pred             EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe
Q 010669          227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL  306 (504)
Q Consensus       227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  306 (504)
                      ..+.|-.+..++|++ ....++|||- .|..+..++.|. .|..+.|.|.--+|++++..|.++.-|+.++   +.+..+
T Consensus       174 ~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G---klVa~~  247 (545)
T KOG1272|consen  174 RDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTG---KLVASI  247 (545)
T ss_pred             hhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechh---hhhHHH
Confidence            333343444555655 4568999995 477788888664 5999999998888999999999999999987   666677


Q ss_pred             ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc
Q 010669          307 KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDV  386 (504)
Q Consensus       307 ~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~  386 (504)
                      ....+.+..++-+|-+..+-+|...|+|.+|.......+..+.     .|.++|.+++++++|.++++.+.|..++|||+
T Consensus       248 ~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL-----cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl  322 (545)
T KOG1272|consen  248 RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL-----CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL  322 (545)
T ss_pred             HccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-----hcCCCcceEEECCCCcEEeecccccceeEeee
Confidence            7777889999999999999999999999999999888777665     67889999999999999999999999999999


Q ss_pred             CCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEE-cCC--CcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          387 KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWD-LRK--LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       387 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd-~~~--~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      |+...+.++.. ..+...++||..| +|+.+-.+.|.+|. .-+  +..-..+-.|.....|..+.|.|-...|-+|...
T Consensus       323 R~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~  400 (545)
T KOG1272|consen  323 RNFYQLHTYRT-PHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAG  400 (545)
T ss_pred             ccccccceeec-CCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccC
Confidence            99887777664 4577889998655 45555555599994 333  2233334445556789999999987777766544

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.60  E-value=8.9e-16  Score=152.46  Aligned_cols=227  Identities=19%  Similarity=0.334  Sum_probs=170.0

Q ss_pred             ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEE
Q 010669          256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC  335 (504)
Q Consensus       256 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~  335 (504)
                      +.++.+.+|..+|.|+.|...|.++++|+.|..++||.+++.   .+...+.||.+.|+.++.+.++.+++++|.|..|+
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR  257 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence            345566799999999999999999999999999999998876   88899999999999999998888999999999999


Q ss_pred             EEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce--------------eeee------
Q 010669          336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--------------VAKF------  395 (504)
Q Consensus       336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~--------------~~~~------  395 (504)
                      +|-+..+..+..+.     +|.+.|++++|+|-.    +.+.||++++||.+-.-.              +..+      
T Consensus       258 vWrl~~~~pvsvLr-----ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~  328 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLR-----GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNG  328 (1113)
T ss_pred             EEecCCCchHHHHh-----ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccc
Confidence            99999999888876     888999999999953    678899999999871100              0000      


Q ss_pred             ---e-C------CCCCeEEEEEcCCCcEEEEEe-----------CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669          396 ---D-G------HVGAVTAISFSENGYYLATAA-----------HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       396 ---~-~------~~~~i~~l~~s~~g~~l~s~~-----------~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~  453 (504)
                         . +      ....+-+++|..++..+++++           .+- +.+|++.++...+....+  ...+..+.++|-
T Consensus       329 ~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh--sd~~yvLd~Hpf  406 (1113)
T KOG0644|consen  329 DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH--SDEVYVLDVHPF  406 (1113)
T ss_pred             cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc--ccceeeeeecCC
Confidence               0 0      001223334444444444433           233 678888888877777666  567888999996


Q ss_pred             CCEE-EEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          454 GSYL-AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       454 g~~l-~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ...+ .+++.|  ..|||+    -.+..++.+..  +.+.+..-.|+++|+.
T Consensus       407 n~ri~msag~dgst~iwdi----~eg~pik~y~~--gh~kl~d~kFSqdgts  452 (1113)
T KOG0644|consen  407 NPRIAMSAGYDGSTIIWDI----WEGIPIKHYFI--GHGKLVDGKFSQDGTS  452 (1113)
T ss_pred             CcHhhhhccCCCceEeeec----ccCCcceeeec--ccceeeccccCCCCce
Confidence            6544 466777  999998    33444444432  1467777888888753

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2.5e-13  Score=136.95  Aligned_cols=216  Identities=15%  Similarity=0.093  Sum_probs=147.4

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCC---CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCC--cEEEEeC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADK--TVRVWQG  294 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg--~i~iwd~  294 (504)
                      .+...+.+..|+|||+.|+..+.+   ..|++||+.+++... +..+.+...+..|+|+|+.|+ +.+.+|  .|.+||+
T Consensus       201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~  279 (433)
T PRK04922        201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL  279 (433)
T ss_pred             cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence            345678999999999988887643   469999998776533 333444556789999998765 555555  5889998


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CCe--EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI  371 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~  371 (504)
                      .++    ....+..+.......+|+|+|++|+.++. +|.  |+++|+.+++...... .   +  ......+|+|||++
T Consensus       280 ~~g----~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~---g--~~~~~~~~SpDG~~  349 (433)
T PRK04922        280 GSR----QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-Q---G--NYNARASVSPDGKK  349 (433)
T ss_pred             CCC----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec-C---C--CCccCEEECCCCCE
Confidence            774    23344555555678899999998887764 444  7777777765433221 1   1  23446899999999


Q ss_pred             EEEEeCCC---cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCC
Q 010669          372 LGTGTSEA---LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETP  444 (504)
Q Consensus       372 l~~g~~dg---~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~  444 (504)
                      ++..+.++   .|.+||+.+++.. .+. +........|+|||++|+..+.+   + |.++|+.. .....+..+  .+.
T Consensus       350 Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~--~g~  424 (433)
T PRK04922        350 IAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSA--DGE  424 (433)
T ss_pred             EEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccC--CCC
Confidence            98765443   6999999877654 332 22244567999999988777654   3 88888854 444444433  345


Q ss_pred             eeEEEECC
Q 010669          445 TNSVDFDH  452 (504)
Q Consensus       445 v~~i~~~~  452 (504)
                      +...+|+|
T Consensus       425 ~~~p~wsp  432 (433)
T PRK04922        425 VREPAWSP  432 (433)
T ss_pred             CCCCccCC
Confidence            66777876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.59  E-value=2.3e-13  Score=120.66  Aligned_cols=153  Identities=22%  Similarity=0.415  Sum_probs=110.0

Q ss_pred             EEEEEccCCCEEEEEeC----------CCeEEEEECCCC-eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE--eCCCc
Q 010669          314 QAVTVHATNKYFVTASL----------DNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG--TSEAL  380 (504)
Q Consensus       314 ~~l~~~p~~~~l~s~s~----------dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g--~~dg~  380 (504)
                      ..+.|+|+|++|+.-..          -|...+|.++.. .....+..    ....+|.+++|+|+|+.|++.  ..++.
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l----~~~~~I~~~~WsP~g~~favi~g~~~~~   84 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL----KKEGPIHDVAWSPNGNEFAVIYGSMPAK   84 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec----cCCCceEEEEECcCCCEEEEEEccCCcc
Confidence            46788999987765433          123455555322 22333321    223469999999999987654  46779


Q ss_pred             EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669          381 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY  456 (504)
Q Consensus       381 I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~  456 (504)
                      |.+||++ ++.+..+.  ...++.+.|+|+|++|++++.+   | |.+||.++.+.+.....    ..+..++|+|+|++
T Consensus        85 v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~----~~~t~~~WsPdGr~  157 (194)
T PF08662_consen   85 VTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH----SDATDVEWSPDGRY  157 (194)
T ss_pred             cEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc----CcEEEEEEcCCCCE
Confidence            9999996 66676664  4678899999999999998744   5 99999998887766643    35789999999999


Q ss_pred             EEEEeC------c--EEEEEeeccCccceeEEEc
Q 010669          457 LAVASA------D--IRVYQVASVKADWNCIKTF  482 (504)
Q Consensus       457 l~~~~~------d--i~vw~~~~~~~~~~~i~~~  482 (504)
                      +++++.      |  ++||++     .++.+...
T Consensus       158 ~~ta~t~~r~~~dng~~Iw~~-----~G~~l~~~  186 (194)
T PF08662_consen  158 LATATTSPRLRVDNGFKIWSF-----QGRLLYKK  186 (194)
T ss_pred             EEEEEeccceeccccEEEEEe-----cCeEeEec
Confidence            998864      3  899998     35555543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=2.6e-12  Score=115.08  Aligned_cols=175  Identities=14%  Similarity=0.279  Sum_probs=130.7

Q ss_pred             CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec--cCCcCeEEEEEccCC
Q 010669          245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK--DHTAEVQAVTVHATN  322 (504)
Q Consensus       245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~  322 (504)
                      ..|.|||-....++.++. ...+|.++.+.++  .+++.- .+.|.||...++-  +.++.+.  .....+.+++-+.+.
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~--k~l~~~et~~NPkGlC~~~~~~~k  148 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP--KLLHVIETRSNPKGLCSLCPTSNK  148 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh--hheeeeecccCCCceEeecCCCCc
Confidence            469999966677777776 5678999999654  455544 4689999987532  3333332  222335555444344


Q ss_pred             CEEEE-EeCCCeEEEEECCCCeE--EEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEEcCCCceeeeeeC-
Q 010669          323 KYFVT-ASLDNTWCFYDLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL-VKIWDVKSQANVAKFDG-  397 (504)
Q Consensus       323 ~~l~s-~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~-I~iwd~~~~~~~~~~~~-  397 (504)
                      .+|+. |-.-|.|.|-|+...+.  ...+.     .|...|.|++++-+|.++|+++..|+ |||||..+|..+.+++. 
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-----AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG  223 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPNAPSIIN-----AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG  223 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcCCceEEE-----cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence            45544 34468999999987655  23333     78899999999999999999999997 79999999999999863 


Q ss_pred             -CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC
Q 010669          398 -HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL  430 (504)
Q Consensus       398 -~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~  430 (504)
                       ....|.+++||||+.+|+++++.| |.||.++..
T Consensus       224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence             345899999999999999999998 999998753

>smart00504 Ubox Modified RING finger domain

Probab=99.58  E-value=2e-15  Score=107.81  Aligned_cols=52  Identities=46%  Similarity=0.793  Sum_probs=49.8

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      ++|+||++++++||++| +||+|||++|++|++++++||+|+++++.+||++.
T Consensus         2 ~~Cpi~~~~~~~Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~   53 (63)
T smart00504        2 FLCPISLEVMKDPVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPN   53 (63)
T ss_pred             cCCcCCCCcCCCCEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeC
Confidence            57999999999999996 89999999999999999999999999999999987

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.58  E-value=2.1e-11  Score=111.81  Aligned_cols=271  Identities=13%  Similarity=0.206  Sum_probs=182.9

Q ss_pred             CCCCeEEEEeccCCCEEEEEeC---CCcEEEEcCCC--Cce--EEEcccCccceeEEEEeeCCCEEEEEeC-CCcEEEEe
Q 010669          222 SKPGIVSLDIHYSKDVIATGGV---DTNAVLFDRPS--GQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQ  293 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~---dg~i~vwd~~~--~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg~i~iwd  293 (504)
                      +.+..+-++|+|+++.|.++-.   +|.|..|.+..  |.+  +........+-..++++++|++++++.. .|.|.++-
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence            3455778999999998888754   46777776653  443  2222222334488999999999988874 57899999


Q ss_pred             CCCCCCcceeEEeccCCcC----------eEEEEEccCCCEEEEEeCC-CeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669          294 GSEDGNYDCKHTLKDHTAE----------VQAVTVHATNKYFVTASLD-NTWCFYDLSSGICLTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~----------v~~l~~~p~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  362 (504)
                      +...+..........|.+.          +....+.|+++++++.+.. -.|.+|++..|......... . ........
T Consensus       118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v-~~G~GPRH  195 (346)
T COG2706         118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-V-KPGAGPRH  195 (346)
T ss_pred             cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-c-CCCCCcce
Confidence            9776554444334456655          8899999999999988652 36999999977654332211 1 22356789


Q ss_pred             EEECCCCCEEEEEe-CCCcEEEEEcCCC-ceeeeeeC---------CCCCeEEEEEcCCCcEEEEEeCC--cEEEEEcCC
Q 010669          363 AAFHPDGLILGTGT-SEALVKIWDVKSQ-ANVAKFDG---------HVGAVTAISFSENGYYLATAAHD--GVKLWDLRK  429 (504)
Q Consensus       363 ~~~~pdg~~l~~g~-~dg~I~iwd~~~~-~~~~~~~~---------~~~~i~~l~~s~~g~~l~s~~~d--~v~vwd~~~  429 (504)
                      +.|||++++..+.+ -+++|.+|..... ..+..+..         -......|..++||++|.++...  .|.+|.+..
T Consensus       196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            99999999887765 4899999998763 22222221         12356789999999999998765  388888764


Q ss_pred             Ccc-eeeeec-CCCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669          430 LKN-FRSFES-SDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       430 ~~~-~~~~~~-~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~  497 (504)
                      ... +..... .......+.+.|+++|++|++++.+   +.+|..+..+.....+.+...   .....|+.|.
T Consensus       276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~---~p~Pvcv~f~  345 (346)
T COG2706         276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAV---VPEPVCVKFL  345 (346)
T ss_pred             CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccC---CCCcEEEEEc
Confidence            322 222221 2224457899999999999999877   999998664333333333211   3455666664

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=7.4e-13  Score=133.66  Aligned_cols=217  Identities=10%  Similarity=0.066  Sum_probs=149.0

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeC---CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCc--EEEEe
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGV---DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKT--VRVWQ  293 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~--i~iwd  293 (504)
                      ..|...+.+.+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+....|+|||+.|+ +.+.+|.  |.+||
T Consensus       198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  276 (435)
T PRK05137        198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD  276 (435)
T ss_pred             ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence            346678999999999998887653   468999999887653 4445666778899999998765 5566665  66668


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~  370 (504)
                      +.++    ....+..+........|+|+|+.|+..+. +|  .|++||+.++.......      ....+....|+|||+
T Consensus       277 ~~~~----~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~------~~~~~~~~~~SpdG~  346 (435)
T PRK05137        277 LRSG----TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF------GGGRYSTPVWSPRGD  346 (435)
T ss_pred             CCCC----ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec------CCCcccCeEECCCCC
Confidence            7663    23445556666778999999998887764 33  68888987765433321      123456688999999


Q ss_pred             EEEEEeCC---CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC------c-EEEEEcCCCcceeeeecCC
Q 010669          371 ILGTGTSE---ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD------G-VKLWDLRKLKNFRSFESSD  440 (504)
Q Consensus       371 ~l~~g~~d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d------~-v~vwd~~~~~~~~~~~~~~  440 (504)
                      .|+....+   ..|.+||+..+. ...+. ....+....|+|||++|+..+.+      . +.++|+..+.. ..+..  
T Consensus       347 ~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~--  421 (435)
T PRK05137        347 LIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT--  421 (435)
T ss_pred             EEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC--
Confidence            99876643   368888875543 23332 22356788999999988765432      3 77788865443 34432  


Q ss_pred             CCCCeeEEEECCC
Q 010669          441 SETPTNSVDFDHS  453 (504)
Q Consensus       441 ~~~~v~~i~~~~~  453 (504)
                       ...+...+|+|-
T Consensus       422 -~~~~~~p~Wsp~  433 (435)
T PRK05137        422 -PGDASDPAWSPL  433 (435)
T ss_pred             -CCCccCcccCCC
Confidence             234667778763

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.58  E-value=4.1e-13  Score=119.06  Aligned_cols=155  Identities=18%  Similarity=0.241  Sum_probs=112.0

Q ss_pred             EEEEeccCCCEEEEEeC----------CCcEEEEcCCC-CceEEEccc-CccceeEEEEeeCCCEEEE--EeCCCcEEEE
Q 010669          227 VSLDIHYSKDVIATGGV----------DTNAVLFDRPS-GQIVTTLSG-HSKKVTSVKFVTEGDLFLT--GSADKTVRVW  292 (504)
Q Consensus       227 ~~~~~s~~~~~l~sg~~----------dg~i~vwd~~~-~~~~~~~~~-h~~~v~~l~~s~~~~~l~s--~s~dg~i~iw  292 (504)
                      ..+.|+++|++|++-..          -|...+|.+.. +..+..+.- ..++|.+++|+|+|+.|++  |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999987665432          12344554422 233344432 3457999999999997654  4467899999


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC---CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG  369 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg  369 (504)
                      |++.    ..+..+  +...+..+.|+|+|+++++++.+   |.+.+||+++.+.+....      | ..++.++|+|||
T Consensus        89 d~~~----~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~------~-~~~t~~~WsPdG  155 (194)
T PF08662_consen   89 DVKG----KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE------H-SDATDVEWSPDG  155 (194)
T ss_pred             cCcc----cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc------c-CcEEEEEEcCCC
Confidence            9963    555555  35678899999999999998754   679999999888876653      2 347899999999


Q ss_pred             CEEEEEeC------CCcEEEEEcCCCceeeee
Q 010669          370 LILGTGTS------EALVKIWDVKSQANVAKF  395 (504)
Q Consensus       370 ~~l~~g~~------dg~I~iwd~~~~~~~~~~  395 (504)
                      ++|+++..      |+.++||+. .|+.+...
T Consensus       156 r~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  156 RYLATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             CEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence            99999874      678999998 46655543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=8.3e-14  Score=142.02  Aligned_cols=203  Identities=19%  Similarity=0.281  Sum_probs=152.5

Q ss_pred             EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      .-++|.....+|+++|.-..|+|||......+..+. +....|+++.-+. .|+.++.|..||.|++||.+....-..+.
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred             eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence            456788766677777778899999998877777665 3445577775543 57899999999999999988754434566


Q ss_pred             EeccCCcC--eEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          305 TLKDHTAE--VQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       305 ~~~~h~~~--v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      ..+.|+..  |..+.+.+.|- .+++|+.||.|++||++.......+.....-...+..+++..|++..++|+|+. +.|
T Consensus      1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred             eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence            77788887  99999998665 599999999999999998522221111100011124899999999999999998 999


Q ss_pred             EEEEcCCCceeeeeeC-------CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc
Q 010669          382 KIWDVKSQANVAKFDG-------HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK  431 (504)
Q Consensus       382 ~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~  431 (504)
                      +||++. |+.+..++.       ..+.+.|++|+|...++++|+.|. |.||...+..
T Consensus      1328 kIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1328 KIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             EEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            999984 444433332       235789999999999999999998 9999876643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.56  E-value=9.1e-12  Score=121.51  Aligned_cols=258  Identities=14%  Similarity=0.150  Sum_probs=166.3

Q ss_pred             CEE-EEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeE
Q 010669          236 DVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ  314 (504)
Q Consensus       236 ~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  314 (504)
                      +++ ++-..+|.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.   +.+.++... ....
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~---~~v~~i~~G-~~~~   81 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG---KVVATIKVG-GNPR   81 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS---SEEEEEE-S-SEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc---cEEEEEecC-CCcc
Confidence            444 45567899999999999999999865444455789999999999999999999999886   566666543 4468


Q ss_pred             EEEEccCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCCC--CCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCc
Q 010669          315 AVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTD--GRPEGYTSAAFHPDGLILGTGTS-EALVKIWDVKSQA  390 (504)
Q Consensus       315 ~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~pdg~~l~~g~~-dg~I~iwd~~~~~  390 (504)
                      +++++++|++++++. .++.+.++|.++.+.+..+...+..  .....+..+..+|....+++.-. .+.|.+.|....+
T Consensus        82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~  161 (369)
T PF02239_consen   82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK  161 (369)
T ss_dssp             EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred             eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence            899999999988775 5899999999999998887632111  13456778888888886665544 5889888987765


Q ss_pred             eee-eeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCC---------------------------
Q 010669          391 NVA-KFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSD---------------------------  440 (504)
Q Consensus       391 ~~~-~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~---------------------------  440 (504)
                      .+. .............|+|+++|++++... . |-++|..+++.+..+....                           
T Consensus       162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~  241 (369)
T PF02239_consen  162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF  241 (369)
T ss_dssp             CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred             ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence            432 222234567889999999988776543 3 8888877654433221100                           


Q ss_pred             ------------C-------------CCCeeEEEECCCCCEEEEE---eCc---EEEEEeeccCccceeEEEccCCCCCC
Q 010669          441 ------------S-------------ETPTNSVDFDHSGSYLAVA---SAD---IRVYQVASVKADWNCIKTFPDLSGTG  489 (504)
Q Consensus       441 ------------~-------------~~~v~~i~~~~~g~~l~~~---~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~  489 (504)
                                  +             .+.-..+..+|+++++.+.   +.+   |.|+|.    ++.+.+.++.... ..
T Consensus       242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~----~tl~~~~~i~~~~-~~  316 (369)
T PF02239_consen  242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDK----KTLKVVKTITPGP-GK  316 (369)
T ss_dssp             EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEEC----CGTEEEE-HHHHH-T-
T ss_pred             ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEEC----cCcceeEEEeccC-CC
Confidence                        0             0111456679999999998   444   999998    6677778775431 22


Q ss_pred             ceeEEEEeecCcc
Q 010669          490 AASFLFLFVLGQT  502 (504)
Q Consensus       490 ~v~~l~~~~~g~~  502 (504)
                      .+..+.|.++|..
T Consensus       317 ~~~h~ef~~dG~~  329 (369)
T PF02239_consen  317 RVVHMEFNPDGKE  329 (369)
T ss_dssp             -EEEEEE-TTSSE
T ss_pred             cEeccEECCCCCE
Confidence            4889999999864

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.56  E-value=6.9e-12  Score=122.38  Aligned_cols=245  Identities=18%  Similarity=0.206  Sum_probs=162.4

Q ss_pred             EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe-CCCcEEEEeCCCCCCcceeEE
Q 010669          227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~  305 (504)
                      ..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...++++++||+++++++ .++.+.++|..+.   +.+..
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl---e~v~~  115 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL---EPVKT  115 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT-----EEEE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccc---cceee
Confidence            457799999999999999999999999999999998544 468899999999988765 6899999998875   45554


Q ss_pred             ecc-------CCcCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE-e
Q 010669          306 LKD-------HTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-T  376 (504)
Q Consensus       306 ~~~-------h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g-~  376 (504)
                      +..       ....+.++..+|....++..-. .+.|.+.|....+.......    ..........|+|++++++++ .
T Consensus       116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i----~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI----KVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE----E--TTEEEEEE-TTSSEEEEEEG
T ss_pred             cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee----cccccccccccCcccceeeeccc
Confidence            432       2346788888888886665555 48888889876543322111    112357789999999987665 4


Q ss_pred             CCCcEEEEEcCCCceeeeee-------------CC-----------------------------------------CCCe
Q 010669          377 SEALVKIWDVKSQANVAKFD-------------GH-----------------------------------------VGAV  402 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~-------------~~-----------------------------------------~~~i  402 (504)
                      .++.|-++|.++++.+..+.             .|                                         .+.-
T Consensus       192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g  271 (369)
T PF02239_consen  192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG  271 (369)
T ss_dssp             GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred             ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence            56678888887765433211             00                                         0111


Q ss_pred             EEEEEcCCCcEEEEE---eCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc----EEEEEeeccC
Q 010669          403 TAISFSENGYYLATA---AHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVASVK  473 (504)
Q Consensus       403 ~~l~~s~~g~~l~s~---~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d----i~vw~~~~~~  473 (504)
                      ..+.-+|++.++.+.   +.+ . |.++|.++.+.+..+.... ...+..+.|+++|.++..+..+    |.|||-    
T Consensus       272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~----  346 (369)
T PF02239_consen  272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA----  346 (369)
T ss_dssp             --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEET----
T ss_pred             ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEEC----
Confidence            345669999999998   444 4 9999999988777765421 2358899999999988776544    999997    


Q ss_pred             ccceeEEEccC
Q 010669          474 ADWNCIKTFPD  484 (504)
Q Consensus       474 ~~~~~i~~~~~  484 (504)
                      ++++.++.++.
T Consensus       347 ~Tl~~~~~i~~  357 (369)
T PF02239_consen  347 KTLKEKKRIPV  357 (369)
T ss_dssp             TTTEEEEEEE-
T ss_pred             CCcEEEEEEEe
Confidence            88999888863

...

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.8e-12  Score=119.48  Aligned_cols=242  Identities=15%  Similarity=0.142  Sum_probs=145.4

Q ss_pred             cccCCCCCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCC-CEEEEEeCCCcEEEEeCC
Q 010669          218 LHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd~~  295 (504)
                      +...|...|..++|||..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-|. ++++.|..+|.|.|||++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            4556677899999999887 7888999999999999999999999888 789999998754 578888899999999998


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEcc------CCCEEEEEeCCCeEEEEECCCC--eEEEEeecCCCCCCCCCeEEEEECC
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHA------TNKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHP  367 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p------~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p  367 (504)
                      ..........-.-...+|..++.-+      .|.+++..+.+  ...|.+.-.  .......    .+..+...++++++
T Consensus       267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle----le~pG~cismqy~~  340 (463)
T KOG1645|consen  267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE----LEPPGICISMQYHG  340 (463)
T ss_pred             CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc----cCCCcceeeeeecC
Confidence            7543222111111223455444322      34444444332  345554321  1111111    12234566777777


Q ss_pred             CCCEE-EEEeCCC------cEE-EEEcCCCceeeeee-CC-CCC-----eE-EEEEcCCCcEEEEEeCC-c-EEEEEcCC
Q 010669          368 DGLIL-GTGTSEA------LVK-IWDVKSQANVAKFD-GH-VGA-----VT-AISFSENGYYLATAAHD-G-VKLWDLRK  429 (504)
Q Consensus       368 dg~~l-~~g~~dg------~I~-iwd~~~~~~~~~~~-~~-~~~-----i~-~l~~s~~g~~l~s~~~d-~-v~vwd~~~  429 (504)
                      ..+.+ ++.-.+.      .|- --|-+.|.++..-+ ++ .+.     -+ .+.-.++.++++.-+++ . +.+||..+
T Consensus       341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s  420 (463)
T KOG1645|consen  341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS  420 (463)
T ss_pred             ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence            44443 3332211      011 11222333322111 11 000     01 11123345566555555 3 99999999


Q ss_pred             CcceeeeecCCCCCCeeEEEECC--CCCEEEEEeCc-EEEEEe
Q 010669          430 LKNFRSFESSDSETPTNSVDFDH--SGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       430 ~~~~~~~~~~~~~~~v~~i~~~~--~g~~l~~~~~d-i~vw~~  469 (504)
                      +..++++...   .+|..++...  .+.||++-.++ ++||..
T Consensus       421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LTd~~v~Iyk~  460 (463)
T KOG1645|consen  421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLTDDRVHIYKN  460 (463)
T ss_pred             hheeeecccC---cceeecceeecCCcchhhheecceEEEEec
Confidence            9999988774   5777776544  34688888888 999875

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.53  E-value=6.3e-12  Score=126.79  Aligned_cols=204  Identities=14%  Similarity=0.143  Sum_probs=138.7

Q ss_pred             CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc
Q 010669          244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA  320 (504)
Q Consensus       244 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p  320 (504)
                      ...|.++|..... ...+..+...+....|+|+|++|+.++.+   ..|.+||+.++.   . ..+..+.+.+.++.|+|
T Consensus       169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---~-~~~~~~~~~~~~~~~sp  243 (417)
T TIGR02800       169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---R-EKVASFPGMNGAPAFSP  243 (417)
T ss_pred             cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---E-EEeecCCCCccceEECC
Confidence            3457788875433 44455566778999999999998877644   479999998742   2 22334555677899999


Q ss_pred             CCCEEEE-EeCCC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeee
Q 010669          321 TNKYFVT-ASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAK  394 (504)
Q Consensus       321 ~~~~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg--~I~iwd~~~~~~~~~  394 (504)
                      +|+.|+. .+.++  .|++||+.++......      .+........|+|||+.|+..+. ++  .|+++|+.+++. ..
T Consensus       244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~  316 (417)
T TIGR02800       244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RR  316 (417)
T ss_pred             CCCEEEEEECCCCCccEEEEECCCCCEEECC------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EE
Confidence            9987764 44444  5889999887543322      12223456789999998876654 33  588888876653 33


Q ss_pred             eeCCCCCeEEEEEcCCCcEEEEEeCC----cEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          395 FDGHVGAVTAISFSENGYYLATAAHD----GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       395 ~~~~~~~i~~l~~s~~g~~l~s~~~d----~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      +..+...+..+.|+|+|.+|+.++.+    .|.+||+.++.. ..+...   .......|+|+|++|+..+.+
T Consensus       317 l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~---~~~~~p~~spdg~~l~~~~~~  385 (417)
T TIGR02800       317 LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT---GLDESPSFAPNGRMILYATTR  385 (417)
T ss_pred             eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC---CCCCCceECCCCCEEEEEEeC
Confidence            44345567788999999998887765    288999887543 223221   223456899999999887765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=1.3e-12  Score=120.15  Aligned_cols=215  Identities=15%  Similarity=0.200  Sum_probs=161.1

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc----eEEEcccCccceeEEEEeeCC-CEEEEEeCC--CcEEEEeCCC
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ----IVTTLSGHSKKVTSVKFVTEG-DLFLTGSAD--KTVRVWQGSE  296 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~d--g~i~iwd~~~  296 (504)
                      .+|..+...  ...|++|-.+|.+.+|..+.+.    .+..+..+ ..+..+.-++.. ..+++||..  ..+.|||+..
T Consensus       106 ~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~  182 (412)
T KOG3881|consen  106 KSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ  182 (412)
T ss_pred             ccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence            345444433  3467777889999999987442    23333333 346666666643 456668888  8899999986


Q ss_pred             CCCcceeEEeccC-----------CcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeEE-EEeecCCCCCCCCCeEE
Q 010669          297 DGNYDCKHTLKDH-----------TAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICL-TQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       297 ~~~~~~~~~~~~h-----------~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~  362 (504)
                      .   .  ..+.+.           .-.++++.|-+.  ...|++++.-+.+++||.+.++.. ..+.     ....++++
T Consensus       183 ~---~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-----~~E~~is~  252 (412)
T KOG3881|consen  183 S---K--QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-----FLENPISS  252 (412)
T ss_pred             c---e--eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-----cccCccee
Confidence            4   2  222211           123567888887  789999999999999999976543 3332     23568999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCceeee-eeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC
Q 010669          363 AAFHPDGLILGTGTSEALVKIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD  440 (504)
Q Consensus       363 ~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~  440 (504)
                      +...|+|+++++|...|.+..||++.++.... +++..+.|++|..+|++.+|++++-|. |+|+|+.+.+.+.....  
T Consensus       253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv--  330 (412)
T KOG3881|consen  253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV--  330 (412)
T ss_pred             eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh--
Confidence            99999999999999999999999999988776 888999999999999999999999998 99999999777665544  


Q ss_pred             CCCCeeEEEECCCC
Q 010669          441 SETPTNSVDFDHSG  454 (504)
Q Consensus       441 ~~~~v~~i~~~~~g  454 (504)
                       ...++++.+.++-
T Consensus       331 -Ks~lt~il~~~~~  343 (412)
T KOG3881|consen  331 -KSRLTFILLRDDV  343 (412)
T ss_pred             -hccccEEEecCCc
Confidence             3567777776543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.6e-12  Score=118.29  Aligned_cols=198  Identities=20%  Similarity=0.313  Sum_probs=141.4

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec-cCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCe
Q 010669          266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGI  343 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~  343 (504)
                      ..+..++|++.-..++++..|-.|++||-..    .+...++ .....|++++|-|.+ ..|++|+. +.|.+|.....-
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss----t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl  173 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS----TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL  173 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC----CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence            3467889988666788999999999998765    2333333 234679999999965 45666665 558999775321


Q ss_pred             EEEE----ee-----cCCCCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcE
Q 010669          344 CLTQ----VS-----DAGTDGRPEGYTSAAFHPDGLILGTGTS-EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYY  413 (504)
Q Consensus       344 ~~~~----~~-----~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~  413 (504)
                      ....    ..     .....+| ..|+++.|.+||..+++++. |..|.|||..++..+.-..-..+.++-+.|||||.+
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~  252 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV  252 (445)
T ss_pred             ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence            1111    00     0012234 68999999999999998874 678999999988766544334568999999999999


Q ss_pred             EEEEeCCc-EEEEEcCC-CcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeecc
Q 010669          414 LATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASV  472 (504)
Q Consensus       414 l~s~~~d~-v~vwd~~~-~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~  472 (504)
                      |++++-|+ .++|.... ....+-...   .+.|...+|+|+|++|...... -++|.+...
T Consensus       253 lfaAt~davfrlw~e~q~wt~erw~lg---sgrvqtacWspcGsfLLf~~sgsp~lysl~f~  311 (445)
T KOG2139|consen  253 LFAATCDAVFRLWQENQSWTKERWILG---SGRVQTACWSPCGSFLLFACSGSPRLYSLTFD  311 (445)
T ss_pred             EEEecccceeeeehhcccceecceecc---CCceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence            99999998 99995543 333333323   4589999999999988776665 778877543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.51  E-value=1.6e-10  Score=112.93  Aligned_cols=262  Identities=14%  Similarity=0.238  Sum_probs=172.6

Q ss_pred             EEEEeCC----CcEEEEcC--CCCce--EEEcccCccceeEEEEeeCCCEEEEEeC----CCcEEEEeCCCC-CCcceeE
Q 010669          238 IATGGVD----TNAVLFDR--PSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSA----DKTVRVWQGSED-GNYDCKH  304 (504)
Q Consensus       238 l~sg~~d----g~i~vwd~--~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~----dg~i~iwd~~~~-~~~~~~~  304 (504)
                      +++|+..    +.|++|++  .++++  +..+. -......++++|++++|+++..    +|.|..|++... +.+..+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            4455555    67888877  44443  22222 3344677899999999998876    579999998875 4445555


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeC-CCeEEEEECCC-CeEEEEee---c--CCC---CCCCCCeEEEEECCCCCEEEE
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSS-GICLTQVS---D--AGT---DGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~-~~~~~~~~---~--~~~---~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      ...........++++|++++++++.. +|.|.++++.. +.......   .  .+.   ........++.|+|||+++++
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            55434455678999999999998875 88999999987 43332211   0  000   112345789999999998877


Q ss_pred             Ee-CCCcEEEEEcCCCc--e--eeeee-CCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcC--CCc--ceeeeecC---
Q 010669          375 GT-SEALVKIWDVKSQA--N--VAKFD-GHVGAVTAISFSENGYYLATAAHD-G-VKLWDLR--KLK--NFRSFESS---  439 (504)
Q Consensus       375 g~-~dg~I~iwd~~~~~--~--~~~~~-~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~--~~~--~~~~~~~~---  439 (504)
                      .. ....|++|++....  .  ...+. ........+.|+|+|+++++..+. + |.+|++.  ++.  .+..+...   
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~  240 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG  240 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence            64 34589999997654  2  12222 234578899999999999888776 3 9999888  332  22333221   


Q ss_pred             -CCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          440 -DSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       440 -~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                       ........+.++|||++|+++...   |.+|+++......+.+..+...  ......+.+.|+|+.
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~  305 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRY  305 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSE
T ss_pred             ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCE
Confidence             112257889999999999988654   9999996554556666666542  345788999999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=3.1e-11  Score=122.02  Aligned_cols=232  Identities=15%  Similarity=0.072  Sum_probs=146.8

Q ss_pred             cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC
Q 010669          246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN  322 (504)
Q Consensus       246 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  322 (504)
                      .|.++|...+. ...+..+...+....|+|||+.|+..+.+   ..|.+||+.++.    ...+....+.+....|+|+|
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~----~~~l~~~~g~~~~~~~SpDG  254 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR----REQITNFEGLNGAPAWSPDG  254 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC----EEEccCCCCCcCCeEECCCC
Confidence            47777876544 34455567789999999999988776543   368889997742    12233333445678999999


Q ss_pred             CEEEE-EeCCC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeeeee
Q 010669          323 KYFVT-ASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKFD  396 (504)
Q Consensus       323 ~~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg--~I~iwd~~~~~~~~~~~  396 (504)
                      +.|+. .+.+|  .|++||+.++.... +.     .+........|+|||+.++..+. +|  .|+++|+.+++... +.
T Consensus       255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt-----~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt  327 (430)
T PRK00178        255 SKLAFVLSKDGNPEIYVMDLASRQLSR-VT-----NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VT  327 (430)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeEE-cc-----cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee
Confidence            98774 44455  68888999876543 32     22234566789999997776553 33  57777887766432 22


Q ss_pred             CCCCCeEEEEEcCCCcEEEEEeCC-c---EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669          397 GHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV  469 (504)
Q Consensus       397 ~~~~~i~~l~~s~~g~~l~s~~~d-~---v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~  469 (504)
                      ..........|+|+|.+|+..+.+ +   |.+||+.++.. ..+...   .......|+|+|+.++..+.+   .++|-+
T Consensus       328 ~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~  403 (430)
T PRK00178        328 FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLV  403 (430)
T ss_pred             cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCC---CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence            112234467899999998877643 2   88999987754 333221   122356899999999887654   444444


Q ss_pred             eccCccceeEEEccCCCCCCceeEEEEee
Q 010669          470 ASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       470 ~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      ..   .+.....+..+  .+.+...+++|
T Consensus       404 ~~---~g~~~~~l~~~--~g~~~~p~ws~  427 (430)
T PRK00178        404 SI---NGRVRLPLPTA--QGEVREPSWSP  427 (430)
T ss_pred             EC---CCCceEECcCC--CCCcCCCccCC
Confidence            22   23344445443  44555555554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.47  E-value=7.9e-12  Score=120.95  Aligned_cols=187  Identities=19%  Similarity=0.292  Sum_probs=150.9

Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCCceEEEccc---CccceeEEEEe--------------------eCCCEEEEEeCCCcE
Q 010669          233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLSG---HSKKVTSVKFV--------------------TEGDLFLTGSADKTV  289 (504)
Q Consensus       233 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~l~~s--------------------~~~~~l~s~s~dg~i  289 (504)
                      |...++|....||.+++|+...++....|..   -.+..++..|.                    .+-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567899999999999999998887666642   23444555553                    123367788889999


Q ss_pred             EEEeCCCCCCcceeEEe--ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC
Q 010669          290 RVWQGSEDGNYDCKHTL--KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP  367 (504)
Q Consensus       290 ~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  367 (504)
                      .+|++..+   +....+  ..|.+.|.++.++.+-..|.+++.|+.+..|+...++.+....     .....+.+++++|
T Consensus        83 ~~ys~~~g---~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-----~~~~~~~sl~is~  154 (541)
T KOG4547|consen   83 LLYSVAGG---EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-----EQKPLVSSLCISP  154 (541)
T ss_pred             EEEEecCC---eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-----cCCCccceEEEcC
Confidence            99998875   344444  4799999999999888999999999999999999998888776     3345789999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCC-----CcEEEEEeCC--cEEEEEcCC
Q 010669          368 DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN-----GYYLATAAHD--GVKLWDLRK  429 (504)
Q Consensus       368 dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-----g~~l~s~~~d--~v~vwd~~~  429 (504)
                      ||.++++++  +.|++||+.+++.+..|.+|.++|++++|-.+     |.+++++..-  ++.+|-+..
T Consensus       155 D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999875  68999999999999999999999999999887     7777776543  388887654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.9e-11  Score=122.18  Aligned_cols=217  Identities=12%  Similarity=0.067  Sum_probs=142.9

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCC---CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCC--cEEEEeC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADK--TVRVWQG  294 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg--~i~iwd~  294 (504)
                      .+...+....|+|||+.|+..+.+   ..|++|++.+++... +....+.+....|+|||+.|+ +.+.+|  .|.+||+
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~  274 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL  274 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence            345678999999999988776543   368999998876533 333344456789999999776 455555  5778888


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI  371 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~  371 (504)
                      .++    ....+..+........|+|+|+.|+..+. +|  .|+++|+.+++.......    +  .......|+|||+.
T Consensus       275 ~~~----~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~----~--~~~~~~~~Spdg~~  344 (430)
T PRK00178        275 ASR----QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV----G--NYNARPRLSADGKT  344 (430)
T ss_pred             CCC----CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC----C--CCccceEECCCCCE
Confidence            764    22334455555677899999998776654 33  577888887764332211    1  12345789999999


Q ss_pred             EEEEeCC-C--cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCC
Q 010669          372 LGTGTSE-A--LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETP  444 (504)
Q Consensus       372 l~~g~~d-g--~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~  444 (504)
                      ++..+.+ +  .|.+||+.+++... +. +........|+|||++++..+.+   . +.++++.. .....+...  .+.
T Consensus       345 i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~--~g~  419 (430)
T PRK00178        345 LVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTA--QGE  419 (430)
T ss_pred             EEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCC--CCC
Confidence            8877643 3  58889998775432 22 11222356899999998877654   2 77778753 333344432  345


Q ss_pred             eeEEEECCC
Q 010669          445 TNSVDFDHS  453 (504)
Q Consensus       445 v~~i~~~~~  453 (504)
                      +...+|+|-
T Consensus       420 ~~~p~ws~~  428 (430)
T PRK00178        420 VREPSWSPY  428 (430)
T ss_pred             cCCCccCCC
Confidence            667778763

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=5.1e-11  Score=120.23  Aligned_cols=232  Identities=13%  Similarity=0.047  Sum_probs=144.2

Q ss_pred             cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC-CC--cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC
Q 010669          246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN  322 (504)
Q Consensus       246 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  322 (504)
                      .+.++|...... +.+..+...+.+..|+|||+.|+..+. ++  .|.+||+.++. ...+..+   .+......|+|+|
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-~~~lt~~---~g~~~~~~wSPDG  273 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-REKVTSF---PGINGAPRFSPDG  273 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-eEEecCC---CCCcCCeeECCCC
Confidence            566777654433 445556778899999999998876653 33  58888887642 1222222   2334578999999


Q ss_pred             CEEEE-EeCCCe--EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeeeee
Q 010669          323 KYFVT-ASLDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKFD  396 (504)
Q Consensus       323 ~~l~s-~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg--~I~iwd~~~~~~~~~~~  396 (504)
                      +.|+. .+.+|.  |++||+.+++... +.     .+.......+|+|||+.|+..+. +|  .|+++|+.+++... +.
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt-----~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt  346 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKALTR-IT-----RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT  346 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCCeEE-Cc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee
Confidence            97765 455664  8888988776433 22     12234567899999998776553 33  46777877765432 22


Q ss_pred             CCCCCeEEEEEcCCCcEEEEEeCC-c---EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669          397 GHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV  469 (504)
Q Consensus       397 ~~~~~i~~l~~s~~g~~l~s~~~d-~---v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~  469 (504)
                      .........+|+|||++|+..+.+ +   |.++|+.++... .+...   .......|+|+|++|+..+.+   ..+|-+
T Consensus       347 ~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~  422 (448)
T PRK04792        347 FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAV  422 (448)
T ss_pred             cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence            122233457899999988776553 2   666788776542 22221   112245799999998876654   334443


Q ss_pred             eccCccceeEEEccCCCCCCceeEEEEee
Q 010669          470 ASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       470 ~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      +   .++.....+..+  .+.+...+|+|
T Consensus       423 ~---~~G~~~~~l~~~--~g~~~~p~Wsp  446 (448)
T PRK04792        423 S---IDGRFKARLPAG--QGEVKSPAWSP  446 (448)
T ss_pred             E---CCCCceEECcCC--CCCcCCCccCC
Confidence            2   245555666554  45566666665

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.46  E-value=2e-11  Score=123.10  Aligned_cols=213  Identities=15%  Similarity=0.118  Sum_probs=141.4

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCC---CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCC--cEEEEeCC
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADK--TVRVWQGS  295 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg--~i~iwd~~  295 (504)
                      +...+.+.+|+|||++|+.+..+   ..|++||+.+++... +..+.+.+.+++|+|+|+.|+ +.+.++  .|.+||+.
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~  266 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD  266 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence            44568899999999998887644   479999998876533 333555677899999998765 444444  58888887


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC-C--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-N--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      ++    ....+..+........|+|+|+.|+.++.. +  .|+++|+.+++... +.     .+........|+|+|+++
T Consensus       267 ~~----~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~-----~~~~~~~~~~~spdg~~i  336 (417)
T TIGR02800       267 GK----QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT-----FRGGYNASPSWSPDGDLI  336 (417)
T ss_pred             CC----CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee-----cCCCCccCeEECCCCCEE
Confidence            64    223344454555677899999988776543 3  58888888776433 22     122346678999999999


Q ss_pred             EEEeCCC---cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc----EEEEEcCCCcceeeeecCCCCCCe
Q 010669          373 GTGTSEA---LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPT  445 (504)
Q Consensus       373 ~~g~~dg---~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~----v~vwd~~~~~~~~~~~~~~~~~~v  445 (504)
                      +.++.++   .|.+||+.++... .+... .......|+|+|.+|+..+.++    +++.+.. +.....+..+  .+.+
T Consensus       337 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~--~g~~  411 (417)
T TIGR02800       337 AFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLG--NGDV  411 (417)
T ss_pred             EEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCC--CCCc
Confidence            9888776   7899998875432 22222 2345568999999888876652    5565543 4444444332  2344


Q ss_pred             eEEEE
Q 010669          446 NSVDF  450 (504)
Q Consensus       446 ~~i~~  450 (504)
                      ..+.|
T Consensus       412 ~~~~w  416 (417)
T TIGR02800       412 REPAW  416 (417)
T ss_pred             CCCCC
Confidence            44444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=6.8e-12  Score=123.30  Aligned_cols=261  Identities=13%  Similarity=0.132  Sum_probs=186.0

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc---------------eEEEcccCccceeEEEEeeCCCEEEEEeCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ---------------IVTTLSGHSKKVTSVKFVTEGDLFLTGSADK  287 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~---------------~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg  287 (504)
                      .....|+.|+.+..++++||.||.++|..+.+..               .-+++.||++.|.-+.|+.+.+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            4467899999999999999999999999775421               1346779999999999999888899999999


Q ss_pred             cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC
Q 010669          288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP  367 (504)
Q Consensus       288 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  367 (504)
                      .|.||-+-.+ .|-....-....+.|.+++|+.+|..|...-.||.|.+=.++.++....-.    .+  .....+.|++
T Consensus        94 lIiVWmlykg-sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL----kg--~~l~hv~ws~  166 (1189)
T KOG2041|consen   94 LIIVWMLYKG-SWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL----KG--QLLAHVLWSE  166 (1189)
T ss_pred             eEEEEeeecc-cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc----ch--heccceeecc
Confidence            9999987664 222222223455779999999999999999999999988777654332211    11  2356789999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCC-------ceeee----eeCCCCCeEEEEEc--------CCCcEEEEEeCCc-EEEEEc
Q 010669          368 DGLILGTGTSEALVKIWDVKSQ-------ANVAK----FDGHVGAVTAISFS--------ENGYYLATAAHDG-VKLWDL  427 (504)
Q Consensus       368 dg~~l~~g~~dg~I~iwd~~~~-------~~~~~----~~~~~~~i~~l~~s--------~~g~~l~s~~~d~-v~vwd~  427 (504)
                      |...++.+-.+|.+.+||....       .+...    +......|-.+.|.        |+...|+.+-.+| +.+..-
T Consensus       167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~  246 (1189)
T KOG2041|consen  167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS  246 (1189)
T ss_pred             cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence            9999999999999999997532       11111    11122235666664        4677888888888 777655


Q ss_pred             CCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-----------EEEEEeeccCccceeEEEccCCCCCCceeEEEE
Q 010669          428 RKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----------IRVYQVASVKADWNCIKTFPDLSGTGAASFLFL  496 (504)
Q Consensus       428 ~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-----------i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~  496 (504)
                      .+......+..   .-.+..+.|+++|.+|+++|.+           |.+|.     .-+..+.++...  ...|+++++
T Consensus       247 eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-----p~G~i~gtlkvp--g~~It~lsW  316 (1189)
T KOG2041|consen  247 ENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-----PYGHIVGTLKVP--GSCITGLSW  316 (1189)
T ss_pred             cCCCCCeEEec---ccEeecceecCCCcEEEEccCcccccCccccceEEEec-----cchhheEEEecC--CceeeeeEE
Confidence            44444444443   3578899999999999999875           33333     345666666554  456777666


Q ss_pred             eecC
Q 010669          497 FVLG  500 (504)
Q Consensus       497 ~~~g  500 (504)
                      =..|
T Consensus       317 Eg~g  320 (1189)
T KOG2041|consen  317 EGTG  320 (1189)
T ss_pred             cCCc
Confidence            4443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.45  E-value=1.7e-11  Score=118.65  Aligned_cols=203  Identities=15%  Similarity=0.190  Sum_probs=159.3

Q ss_pred             eCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEc------c--------------CCCEEEEEeCCCeE
Q 010669          275 TEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH------A--------------TNKYFVTASLDNTW  334 (504)
Q Consensus       275 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~------p--------------~~~~l~s~s~dg~i  334 (504)
                      |-..+++....||.+++|+...+...........-.+...+..|.      |              +...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            345688999999999999988763222222222223444444441      1              23467888889999


Q ss_pred             EEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEE
Q 010669          335 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL  414 (504)
Q Consensus       335 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  414 (504)
                      .+|++..++....+.   ...|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+......+.+++.+|||..|
T Consensus        83 ~~ys~~~g~it~~~s---t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLS---TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EEEEecCCeEEEEEe---cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence            999999999888887   34788999999999999999999999999999999999999999888899999999999999


Q ss_pred             EEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCC-----CCEEEEEeC-c--EEEEEeeccCccceeEEEcc
Q 010669          415 ATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-----GSYLAVASA-D--IRVYQVASVKADWNCIKTFP  483 (504)
Q Consensus       415 ~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~-----g~~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~  483 (504)
                      ++++ ..|++||+.+.+.+..|.+|  .++|+++.|-.+     |.|+.++.. +  +.+|.+....+.......+.
T Consensus       160 ~~as-~~ik~~~~~~kevv~~ftgh--~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~  233 (541)
T KOG4547|consen  160 LTAS-RQIKVLDIETKEVVITFTGH--GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLT  233 (541)
T ss_pred             Eecc-ceEEEEEccCceEEEEecCC--CcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeec
Confidence            8875 34999999999999999887  789999999876     777776533 2  99998876555555555443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=3.9e-11  Score=121.08  Aligned_cols=215  Identities=13%  Similarity=0.085  Sum_probs=138.4

Q ss_pred             CCCCeEEEEeccCCCEEEEEeC-C--CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEE-EeCCCc--EEEEeCC
Q 010669          222 SKPGIVSLDIHYSKDVIATGGV-D--TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLT-GSADKT--VRVWQGS  295 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~-d--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~s~dg~--i~iwd~~  295 (504)
                      +...+.+..|+|||+.|+..+. +  ..|++||+.+++... +....+......|+|||+.|+. .+.+|.  |.+||+.
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            3557889999999998877653 2  258889998776432 2222333457899999997764 566665  6677776


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      ++    ....+..+........|+|+|+.|+..+. ++  .|.++|+.+++.......    +  ......+|+|||++|
T Consensus       295 tg----~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~----g--~~~~~~~~SpDG~~l  364 (448)
T PRK04792        295 TK----ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE----G--EQNLGGSITPDGRSM  364 (448)
T ss_pred             CC----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC----C--CCCcCeeECCCCCEE
Confidence            63    23344455556678899999998876654 33  577778877764432211    1  123456899999988


Q ss_pred             EEEeC-CC--cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c---EEEEEcCCCcceeeeecCCCCCCe
Q 010669          373 GTGTS-EA--LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPT  445 (504)
Q Consensus       373 ~~g~~-dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~---v~vwd~~~~~~~~~~~~~~~~~~v  445 (504)
                      +..+. ++  .|.++|+.+++... +... .......|+|||+.|+..+.+ +   +++++. ++.....+...  .+.+
T Consensus       365 ~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~--~g~~  439 (448)
T PRK04792        365 IMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG--QGEV  439 (448)
T ss_pred             EEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC--CCCc
Confidence            77654 34  45667887775432 2211 122345799999988776544 2   777786 45555555443  3456


Q ss_pred             eEEEECC
Q 010669          446 NSVDFDH  452 (504)
Q Consensus       446 ~~i~~~~  452 (504)
                      ...+|+|
T Consensus       440 ~~p~Wsp  446 (448)
T PRK04792        440 KSPAWSP  446 (448)
T ss_pred             CCCccCC
Confidence            7778877

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.8e-12  Score=122.27  Aligned_cols=235  Identities=18%  Similarity=0.226  Sum_probs=173.2

Q ss_pred             eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeE
Q 010669          257 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTW  334 (504)
Q Consensus       257 ~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i  334 (504)
                      +...+..|.+.|+.|.|...|..|++|+.|..|.+||+....  ....-..+|...|....|-|.  ...+++++.||.+
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccccccccccchhhhhccCCCCCcCceeccccCce
Confidence            345678899999999999999999999999999999998753  223334588888888888883  4689999999999


Q ss_pred             EEEECCCCeEEE-EeecCCCCCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeee---CCCC---CeEEEE
Q 010669          335 CFYDLSSGICLT-QVSDAGTDGRPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFD---GHVG---AVTAIS  406 (504)
Q Consensus       335 ~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~pd-g~~l~~g~~dg~I~iwd~~~~~~~~~~~---~~~~---~i~~l~  406 (504)
                      ++=.+....... ...   ...|.+.|.-++.-|+ ..-|.+++.|+.+.-+|++.+.+...+.   .+..   ....++
T Consensus       212 r~s~i~~t~~~e~t~r---l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  212 RVSEILETGYVENTKR---LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             eeeeeccccceeccee---cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence            987765433332 222   3367789999999994 4678899999999999999876544442   2333   567888


Q ss_pred             EcCC-CcEEEEEeCCc-EEEEEcCCCcce------eeeecC----CCCCCeeEEEECCCCCEEEEEeCc--EEEEEeecc
Q 010669          407 FSEN-GYYLATAAHDG-VKLWDLRKLKNF------RSFESS----DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV  472 (504)
Q Consensus       407 ~s~~-g~~l~s~~~d~-v~vwd~~~~~~~------~~~~~~----~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~  472 (504)
                      ..|. .+.+++|+.|. +++||.+.....      ..+..+    .....|++++|+.++.-|.++-+|  |++|.  +.
T Consensus       289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~--~~  366 (559)
T KOG1334|consen  289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN--KS  366 (559)
T ss_pred             cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec--cc
Confidence            9884 56899999998 999998864322      222211    224578999999887766666666  66663  33


Q ss_pred             Cccc----------eeEEE-ccCCCCCCceeEEEEee
Q 010669          473 KADW----------NCIKT-FPDLSGTGAASFLFLFV  498 (504)
Q Consensus       473 ~~~~----------~~i~~-~~~h~~~~~v~~l~~~~  498 (504)
                      .+.+          ..++. |+||.+...|-++.||-
T Consensus       367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG  403 (559)
T KOG1334|consen  367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG  403 (559)
T ss_pred             cccCCCCCCCcchhhccchhhcccccccccceeeecc
Confidence            3334          34444 89998888899998884

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=8.9e-11  Score=117.53  Aligned_cols=222  Identities=9%  Similarity=0.001  Sum_probs=135.8

Q ss_pred             CCCeEEEEeccCCCE---EEEEeCCC--cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC-CC----cEEEE
Q 010669          223 KPGIVSLDIHYSKDV---IATGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DK----TVRVW  292 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~---l~sg~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg----~i~iw  292 (504)
                      ...+.+-.|+|||+.   +++...+|  .|++.++.+++... +....+......|+|||+.|+..+. +|    .+.+|
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~  262 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF  262 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence            345667799999974   22444443  57777888775432 2223444566899999988776542 23    34446


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEe-CCCeEEEE--ECCC-CeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFY--DLSS-GICLTQVSDAGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iw--d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~pd  368 (504)
                      ++..+...........+.+......|+|||+.|+..+ .+|...+|  ++.. +.....+.     .....+....|+||
T Consensus       263 ~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-----~~~~~~~~p~wSPD  337 (428)
T PRK01029        263 SLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-----KKYRNSSCPAWSPD  337 (428)
T ss_pred             ecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-----cCCCCccceeECCC
Confidence            6654211122222222233456789999999877665 46654554  4432 22223332     12235678899999


Q ss_pred             CCEEEEEeCC---CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCC
Q 010669          369 GLILGTGTSE---ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDS  441 (504)
Q Consensus       369 g~~l~~g~~d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~  441 (504)
                      |+.|+..+.+   ..|.+||+.+++...... ....+....|+|||++|+..+.+   . |++||+..++.......   
T Consensus       338 G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~---  413 (428)
T PRK01029        338 GKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG---  413 (428)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC---
Confidence            9988876543   369999998876543322 33456789999999988754432   3 89999987765433322   


Q ss_pred             CCCeeEEEECCCC
Q 010669          442 ETPTNSVDFDHSG  454 (504)
Q Consensus       442 ~~~v~~i~~~~~g  454 (504)
                      .+.+...+|+|-.
T Consensus       414 ~g~~~~p~Ws~~~  426 (428)
T PRK01029        414 SGEKRFPSWGAFP  426 (428)
T ss_pred             CCcccCceecCCC
Confidence            3456678888753

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=1.2e-10  Score=112.22  Aligned_cols=228  Identities=16%  Similarity=0.259  Sum_probs=156.6

Q ss_pred             EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC--EEEE-----EeCCCcEEEEeCCCCCC
Q 010669          227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD--LFLT-----GSADKTVRVWQGSEDGN  299 (504)
Q Consensus       227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s-----~s~dg~i~iwd~~~~~~  299 (504)
                      ++..|+.|..+.+- -..+.+++|++.+.+.+.. +-|...|+.+.++|.+.  .+++     .|.-+.|+||.....+.
T Consensus       129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~  206 (566)
T KOG2315|consen  129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ  206 (566)
T ss_pred             cccccccchhhhhh-hhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence            67888887764332 2356799999876443222 23677899999998633  3332     35567899998764322


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCE-EEEE--eCC---------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKY-FVTA--SLD---------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP  367 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~-l~s~--s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  367 (504)
                      ...+..-.-....=..+.|++-|.- |+.+  .-|         .++++.+++.......+.      ..++|.++.|+|
T Consensus       207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~------k~GPVhdv~W~~  280 (566)
T KOG2315|consen  207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL------KEGPVHDVTWSP  280 (566)
T ss_pred             cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC------CCCCceEEEECC
Confidence            1111111111223356788887763 2222  223         368888888555544442      357899999999


Q ss_pred             CCCEEEE--EeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCC
Q 010669          368 DGLILGT--GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDS  441 (504)
Q Consensus       368 dg~~l~~--g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~  441 (504)
                      +|+-|++  |-.-..+.|||++ +.++..|  ..++-+++-|+|.|++++.++-+   | |-|||+.+.+++..+...  
T Consensus       281 s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--  355 (566)
T KOG2315|consen  281 SGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--  355 (566)
T ss_pred             CCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--
Confidence            9987765  4567789999985 4566555  35778899999999999988876   5 999999998888888764  


Q ss_pred             CCCeeEEEECCCCCEEEEEeCc--------EEEEEe
Q 010669          442 ETPTNSVDFDHSGSYLAVASAD--------IRVYQV  469 (504)
Q Consensus       442 ~~~v~~i~~~~~g~~l~~~~~d--------i~vw~~  469 (504)
                        ..+-+.|+|||.+++++...        ++||++
T Consensus       356 --~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  356 --NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             --CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence              45668999999999988653        999997

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=3.4e-11  Score=115.85  Aligned_cols=234  Identities=15%  Similarity=0.195  Sum_probs=162.8

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      |...-++.|-.-++.-..|.+|.+..- -|.... +. -...-.+++++. ... |+.++....|.=++++.+   ..+.
T Consensus        97 V~feiLsDD~SK~v~L~~DR~IefHak-~G~hy~-~R-IP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqG---rfL~  169 (703)
T KOG2321|consen   97 VDFEILSDDYSKSVFLQNDRTIEFHAK-YGRHYR-TR-IPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQG---RFLN  169 (703)
T ss_pred             eeEEEeccchhhheEeecCceeeehhh-cCeeee-ee-cCcCCccccccCCCcc-EEEeecCcceEEEEcccc---cccc
Confidence            444444444444444455666655432 122111 11 112234566653 344 444444456777888876   5566


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCCCC-----CCeEEEEECCCCCEEEEEeCC
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG-TDGRP-----EGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~-----~~v~~~~~~pdg~~l~~g~~d  378 (504)
                      .+....+.++++..++-..+|++|+.+|.|.+||.+....+..+.... ...+.     ..|+++.|+.+|-.+++|+.+
T Consensus       170 P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~  249 (703)
T KOG2321|consen  170 PFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST  249 (703)
T ss_pred             ccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC
Confidence            666667899999999999999999999999999999877666654221 11222     349999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeee-CCCCCeEEEEEcCC--CcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          379 ALVKIWDVKSQANVAKFD-GHVGAVTAISFSEN--GYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~--g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      |.|.|||+|+.+++..-. +...+|..+.|.+.  +..+++....-++|||-.+++....+..   ...++.+++-|++.
T Consensus       250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sG  326 (703)
T KOG2321|consen  250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSG  326 (703)
T ss_pred             CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCCc
Confidence            999999999998876543 23458999999876  4556655444499999999999888765   35699999999999


Q ss_pred             EEEEEeCc--EEEEEe
Q 010669          456 YLAVASAD--IRVYQV  469 (504)
Q Consensus       456 ~l~~~~~d--i~vw~~  469 (504)
                      +++++..+  +..|-+
T Consensus       327 m~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  327 MFFTANESSKMHTYYI  342 (703)
T ss_pred             eEEEecCCCcceeEEc
Confidence            99999887  444443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=3.3e-10  Score=113.43  Aligned_cols=213  Identities=10%  Similarity=0.076  Sum_probs=130.4

Q ss_pred             CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCE---EEEEeCCC--cEEEEeCCCCCCcceeEEeccCCcCeEEEEEc
Q 010669          245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL---FLTGSADK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH  319 (504)
Q Consensus       245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~---l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~  319 (504)
                      +.|.+.|...+.. +.+......+..-.|+|||+.   +++...+|  .|.+.++.++. ...+..   ..+......|+
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-~~~lt~---~~g~~~~p~wS  239 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-GKKILA---LQGNQLMPTFS  239 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC-ceEeec---CCCCccceEEC
Confidence            4677777764443 345445556677899999974   23444444  46666776642 222332   33445678999


Q ss_pred             cCCCEEEEEeC-CC----eEEEEECCCC--eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEE--EcCC-
Q 010669          320 ATNKYFVTASL-DN----TWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIW--DVKS-  388 (504)
Q Consensus       320 p~~~~l~s~s~-dg----~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iw--d~~~-  388 (504)
                      |||+.|+..+. +|    .+..|++..+  .....+..    .........+|+|||+.|+..+ .+|...+|  ++.. 
T Consensus       240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~----~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~  315 (428)
T PRK01029        240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN----EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE  315 (428)
T ss_pred             CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec----CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc
Confidence            99998887653 22    3445777653  11222221    1112345679999999777655 46655555  4432 


Q ss_pred             CceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-
Q 010669          389 QANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-  463 (504)
Q Consensus       389 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-  463 (504)
                      +.....+..+...+....|+|||++|+..+.+   . |.+||+.+++... +...  ...+....|+|||++|+..+.+ 
T Consensus       316 g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~--~~~~~~p~wSpDG~~L~f~~~~~  392 (428)
T PRK01029        316 GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTS--PENKESPSWAIDSLHLVYSAGNS  392 (428)
T ss_pred             ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCC--CCCccceEECCCCCEEEEEECCC
Confidence            23334444444567789999999988876543   2 9999998876543 3222  2356778999999988865432 


Q ss_pred             ----EEEEEe
Q 010669          464 ----IRVYQV  469 (504)
Q Consensus       464 ----i~vw~~  469 (504)
                          +.+|++
T Consensus       393 g~~~L~~vdl  402 (428)
T PRK01029        393 NESELYLISL  402 (428)
T ss_pred             CCceEEEEEC
Confidence                666666

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.38  E-value=5.2e-11  Score=105.73  Aligned_cols=223  Identities=13%  Similarity=0.132  Sum_probs=152.3

Q ss_pred             CCCcEEEEcCCCCceEE---EcccCccceeEEEEee---CCC-EEEEEeCCCcEEEEeCCCCCCcceeEEeccCC---cC
Q 010669          243 VDTNAVLFDRPSGQIVT---TLSGHSKKVTSVKFVT---EGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT---AE  312 (504)
Q Consensus       243 ~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~s~---~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~---~~  312 (504)
                      ..|.+.+|++...+...   .....+..+..+.|.-   +|. .++-+..+|.|.+|.............+....   ..
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            34678888887654433   1122345678888863   555 56677888999999766532111111121111   12


Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-c
Q 010669          313 VQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQ-A  390 (504)
Q Consensus       313 v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~-~  390 (504)
                      ..++.|++.+..++++..+|.+.+.+...........   -..|........|+. +.+++.+|+.||.+..||+|.. +
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~---wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQT---WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccc---ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence            4578899999999999999999866655544333111   236778888899987 5679999999999999999943 3


Q ss_pred             eeee-eeCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCC-CcceeeeecCCCCCCeeEEEECCCC--CEEEEEeCc-
Q 010669          391 NVAK-FDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSG--SYLAVASAD-  463 (504)
Q Consensus       391 ~~~~-~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~-~~~~~~~~~~~~~~~v~~i~~~~~g--~~l~~~~~d-  463 (504)
                      .+.. .+.|...|.+|.-+| .+.++++|+.|. |++||.|+ ++++..-..   .+.|+.+.++|.-  ..|+++-.+ 
T Consensus       201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~G  277 (339)
T KOG0280|consen  201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV---GGGVWRIKHHPEIFHRLLAACMHNG  277 (339)
T ss_pred             eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc---ccceEEEEecchhhhHHHHHHHhcC
Confidence            3333 455888999998887 688999999998 99999995 455544333   5789999999953  345555444 


Q ss_pred             EEEEEeec
Q 010669          464 IRVYQVAS  471 (504)
Q Consensus       464 i~vw~~~~  471 (504)
                      .+|-+.+.
T Consensus       278 ~ki~~~~~  285 (339)
T KOG0280|consen  278 AKILDSSD  285 (339)
T ss_pred             ceEEEecc
Confidence            66666644

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.36  E-value=2.1e-11  Score=125.01  Aligned_cols=194  Identities=19%  Similarity=0.295  Sum_probs=155.3

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccce----eEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKV----TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v----~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      |....+.-+...++.+..+..+.+||...+.....+.......    .-+.++++.-++++|+.-+.|.+|+.....  .
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn--~  167 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN--K  167 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC--C
Confidence            4445566677788888889999999998877766665333221    112234555689999999999999988542  2


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      . ..+.+|.+.|.++.|+-+|.+++++|.|.++++|++++.+.....    .-+|...+..++|+|+  .+++++.|-+.
T Consensus       168 p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~----~fgHsaRvw~~~~~~n--~i~t~gedctc  240 (967)
T KOG0974|consen  168 P-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT----GFGHSARVWACCFLPN--RIITVGEDCTC  240 (967)
T ss_pred             c-ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc----cccccceeEEEEeccc--eeEEeccceEE
Confidence            2 257899999999999999999999999999999999998766522    2388999999999998  89999999999


Q ss_pred             EEEEcCCCceeeeeeCCCC-CeEEEEEcCCCcEEEEEeCCc-EEEEEcCC
Q 010669          382 KIWDVKSQANVAKFDGHVG-AVTAISFSENGYYLATAAHDG-VKLWDLRK  429 (504)
Q Consensus       382 ~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~  429 (504)
                      ++|+. ++..+..+.+|.+ .|..++..++...+++++.|+ +++||+..
T Consensus       241 rvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  241 RVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            99976 4555668887764 799999999999999999998 99999753

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.35  E-value=6.4e-12  Score=134.63  Aligned_cols=200  Identities=21%  Similarity=0.346  Sum_probs=163.2

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      +.+-..|.++.-+|...+.++|+.||.|++|....++.+..+. ..+..|+.+.|+.+|+.+..+..||.+.+|.+..  
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--
Confidence            3445678888889999999999999999999998888777664 3348899999999999999999999999998763  


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEe---CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTAS---LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                        +.....+.|+....++.|-.  ..+++++   .++.+.+||..-......+.    ..|..+++++++-|...+|++|
T Consensus      2283 --k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~----~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2283 --KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH----TCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred             --cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee----eecCCCceEEEEcCcceEEEec
Confidence              66677788998888888864  5666664   47789999975432222221    2788899999999999999999


Q ss_pred             eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC
Q 010669          376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS  439 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~  439 (504)
                      +.+|.|++||++..+.++.+..         +. ...++++|+..| ++||++.....++++...
T Consensus      2355 gr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred             CCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence            9999999999999888877764         44 567888998888 999999988777777653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=2.1e-11  Score=108.90  Aligned_cols=245  Identities=20%  Similarity=0.347  Sum_probs=166.3

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc-----eEEEcccCc------------cceeEEEEeeCCC--EEEEE
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-----IVTTLSGHS------------KKVTSVKFVTEGD--LFLTG  283 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~------------~~v~~l~~s~~~~--~l~s~  283 (504)
                      ...|+++.|...|.||++|...|.|.+|......     ....+++|.            ..|..+.|..++.  .++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4579999999999999999999999999765432     233456654            3588899976443  56777


Q ss_pred             eCCCcEEEEeCCCC-------------------CCc--------------------ceeEEe-ccCCcCeEEEEEccCCC
Q 010669          284 SADKTVRVWQGSED-------------------GNY--------------------DCKHTL-KDHTAEVQAVTVHATNK  323 (504)
Q Consensus       284 s~dg~i~iwd~~~~-------------------~~~--------------------~~~~~~-~~h~~~v~~l~~~p~~~  323 (504)
                      +.|.+|++|.+...                   +..                    .+.+.. ..|.--|.++.|+.+..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            88999999975432                   000                    000111 35777788999998777


Q ss_pred             EEEEEeCCCeEEEEECCCCeEEEEeec---CCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCce------ee
Q 010669          324 YFVTASLDNTWCFYDLSSGICLTQVSD---AGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQAN------VA  393 (504)
Q Consensus       324 ~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~------~~  393 (504)
                      .++++ .|=.|.+|+++-......+..   .....-...|++..||| ..+.+.-.+..|.|++-|+|....      +.
T Consensus       186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            77765 567899999875433333221   11111124578999999 456777788899999999985321      11


Q ss_pred             e----------eeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCc-ceeeeecCCC----------CCC---eeEEE
Q 010669          394 K----------FDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLK-NFRSFESSDS----------ETP---TNSVD  449 (504)
Q Consensus       394 ~----------~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~-~~~~~~~~~~----------~~~---v~~i~  449 (504)
                      .          |.+-...|..+.|+++|+++++-+.-.|++||.+..+ ++.++..+..          ...   -..+.
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeis  344 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEIS  344 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence            1          1122357889999999999998877779999998654 5666644321          112   24578


Q ss_pred             ECCCCCEEEEEeCc--EEEEE
Q 010669          450 FDHSGSYLAVASAD--IRVYQ  468 (504)
Q Consensus       450 ~~~~g~~l~~~~~d--i~vw~  468 (504)
                      |+.+...+.+|+..  .-+|-
T Consensus       345 fSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         345 FSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             ecCCcccccccccccceeeec
Confidence            88888888888766  55554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.35  E-value=7.2e-09  Score=99.04  Aligned_cols=227  Identities=13%  Similarity=0.152  Sum_probs=157.6

Q ss_pred             CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC----------CCcEEEEeCCCCCCcceeEEeccC-----
Q 010669          245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA----------DKTVRVWQGSEDGNYDCKHTLKDH-----  309 (504)
Q Consensus       245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~h-----  309 (504)
                      +.|.+.|..+++.+.++.....+- .+ ++||++.|+++..          +..|.+||..+.   +.+..+...     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~---~~~~~i~~p~~p~~  101 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH---LPIADIELPEGPRF  101 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC---cEEeEEccCCCchh
Confidence            899999999999988887544333 34 8999998777665          789999999886   555554421     


Q ss_pred             --CcCeEEEEEccCCCEEEEEe-C-CCeEEEEECCCCeEEEEeecCCC----------------CCCC----------CC
Q 010669          310 --TAEVQAVTVHATNKYFVTAS-L-DNTWCFYDLSSGICLTQVSDAGT----------------DGRP----------EG  359 (504)
Q Consensus       310 --~~~v~~l~~~p~~~~l~s~s-~-dg~i~iwd~~~~~~~~~~~~~~~----------------~~~~----------~~  359 (504)
                        ...-..++++|+|+++++.. . +..|.++|+.+++.+..+.....                ++..          ..
T Consensus       102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~  181 (352)
T TIGR02658       102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK  181 (352)
T ss_pred             hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE
Confidence              12234788999999998776 3 68999999998877765542110                0000          00


Q ss_pred             eEEE--------------EECC-CCCEEEEEeCCCcEEEEEcCCC-----ceeeeeeC-------CCCCeEEEEEcCCCc
Q 010669          360 YTSA--------------AFHP-DGLILGTGTSEALVKIWDVKSQ-----ANVAKFDG-------HVGAVTAISFSENGY  412 (504)
Q Consensus       360 v~~~--------------~~~p-dg~~l~~g~~dg~I~iwd~~~~-----~~~~~~~~-------~~~~i~~l~~s~~g~  412 (504)
                      ....              .|.+ +|.++++... |.|.+.|+...     ..+..+..       ..+.+.-++++++|.
T Consensus       182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~  260 (352)
T TIGR02658       182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD  260 (352)
T ss_pred             EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence            1111              1233 7887777766 99999996433     22322211       233445599999998


Q ss_pred             EEEEEe----------CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC-EEEEEeC--c-EEEEEeeccCccce
Q 010669          413 YLATAA----------HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA--D-IRVYQVASVKADWN  477 (504)
Q Consensus       413 ~l~s~~----------~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~~~--d-i~vw~~~~~~~~~~  477 (504)
                      .+++..          ..+ |.++|..+++.+..+..   ...+..++++|||+ +|++...  + +.++|.    .+.+
T Consensus       261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~----~t~k  333 (352)
T TIGR02658       261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDA----ETGK  333 (352)
T ss_pred             EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEEC----cCCe
Confidence            888743          113 99999999999998876   35899999999999 7776553  2 999998    7788


Q ss_pred             eEEEccC
Q 010669          478 CIKTFPD  484 (504)
Q Consensus       478 ~i~~~~~  484 (504)
                      .++++..
T Consensus       334 ~i~~i~~  340 (352)
T TIGR02658       334 ELSSVNQ  340 (352)
T ss_pred             EEeeecc
Confidence            8888743

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.34  E-value=1.2e-10  Score=103.38  Aligned_cols=232  Identities=17%  Similarity=0.164  Sum_probs=163.3

Q ss_pred             CCCCeEEEEecc---CCC-EEEEEeCCCcEEEEcCCCCceEEEcccCc------cceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669          222 SKPGIVSLDIHY---SKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHS------KKVTSVKFVTEGDLFLTGSADKTVRV  291 (504)
Q Consensus       222 ~~~~I~~~~~s~---~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~------~~v~~l~~s~~~~~l~s~s~dg~i~i  291 (504)
                      -.+.+..+.|..   +|. .++-+-.+|.|.+|..........+.+-.      ....++.|++.+..++++..+|.+.+
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~  147 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG  147 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence            345666777764   455 56677788999999765444333333221      12457788888888999999999986


Q ss_pred             EeCCCCCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCCCCCCeEEEEECC-C
Q 010669          292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHP-D  368 (504)
Q Consensus       292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p-d  368 (504)
                      -+... ...+..+..+.|.-+++...|+. +.+.+++|+.|+.+..||++..+ .+..-    ...|..+|.++.-+| .
T Consensus       148 v~~t~-~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n----~kvH~~GV~SI~ss~~~  222 (339)
T KOG0280|consen  148 VYETE-MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN----SKVHTSGVVSIYSSPPK  222 (339)
T ss_pred             Eecce-eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec----ceeeecceEEEecCCCC
Confidence            55443 33345557889999999999976 44689999999999999999433 22221    236778899999888 7


Q ss_pred             CCEEEEEeCCCcEEEEEcCC-CceeeeeeCCCCCeEEEEEcCC--CcEEEEEeCCcEEEEEcCCCcce-----eeeecCC
Q 010669          369 GLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSEN--GYYLATAAHDGVKLWDLRKLKNF-----RSFESSD  440 (504)
Q Consensus       369 g~~l~~g~~dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~--g~~l~s~~~d~v~vwd~~~~~~~-----~~~~~~~  440 (504)
                      +.++++|+.|-.|++||.|+ ++++..-. -.+.|..+.++|.  +..|+++-.+|.+|-+.......     ...+.  
T Consensus       223 ~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~--  299 (339)
T KOG0280|consen  223 PTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKI--  299 (339)
T ss_pred             CceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccc--
Confidence            88999999999999999995 56665544 3478999999994  45667777777888887654322     12222  


Q ss_pred             CCCCeeEEEECCCCCEEEEEe
Q 010669          441 SETPTNSVDFDHSGSYLAVAS  461 (504)
Q Consensus       441 ~~~~v~~i~~~~~g~~l~~~~  461 (504)
                      +.+-+..-.|+....+|++++
T Consensus       300 hdSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  300 HDSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             ccceeeccccccccceeeeee
Confidence            244556666765567788865

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.34  E-value=3.4e-10  Score=99.39  Aligned_cols=236  Identities=17%  Similarity=0.140  Sum_probs=160.7

Q ss_pred             EEEecc-----CCCEEEEEeCCCcEEEEcCCCCce-EEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCCc
Q 010669          228 SLDIHY-----SKDVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNY  300 (504)
Q Consensus       228 ~~~~s~-----~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~  300 (504)
                      .+.|-|     ...+|+.||.-|...+|...+.+. ......|...|+-+.=..+ ..-+..++.|.++++.+++.+...
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~  151 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK  151 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence            355655     234899999999999999886544 3333444443332211112 224777889999999998775321


Q ss_pred             ceeEEeccCCc--CeEEEEEccCCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          301 DCKHTLKDHTA--EVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       301 ~~~~~~~~h~~--~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                      .     ..|..  .+.++.++++++++++.+....|..|.+.... .+..+...   .....-.+..|+.....+|++..
T Consensus       152 ~-----~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a---~t~D~gF~~S~s~~~~~FAv~~Q  223 (344)
T KOG4532|consen  152 F-----AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA---PTSDHGFYNSFSENDLQFAVVFQ  223 (344)
T ss_pred             c-----eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec---ccCCCceeeeeccCcceEEEEec
Confidence            1     12333  37889999999999999999999999886532 22222211   23345678899999999999999


Q ss_pred             CCcEEEEEcCCCceeee-----eeCCCCCeEEEEEcCCCc--EEEEEeCCc-EEEEEcCCCcceeeeecCCC------CC
Q 010669          378 EALVKIWDVKSQANVAK-----FDGHVGAVTAISFSENGY--YLATAAHDG-VKLWDLRKLKNFRSFESSDS------ET  443 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~-----~~~~~~~i~~l~~s~~g~--~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~------~~  443 (504)
                      ||++.|||+|.......     -..|.+++..+.|++.|.  +|+..-.-+ +.+.|+|+++..+.+...+.      ..
T Consensus       224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq  303 (344)
T KOG4532|consen  224 DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQ  303 (344)
T ss_pred             CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccc
Confidence            99999999987543222     234889999999998653  233322224 99999999887666654322      13


Q ss_pred             CeeEEEECCCCCEEEEEeCc-EEEEEeec
Q 010669          444 PTNSVDFDHSGSYLAVASAD-IRVYQVAS  471 (504)
Q Consensus       444 ~v~~i~~~~~g~~l~~~~~d-i~vw~~~~  471 (504)
                      .+..-.|+.++.-+.+.+++ +.=|++.+
T Consensus       304 ~ifgt~f~~~n~s~~v~~e~~~ae~ni~s  332 (344)
T KOG4532|consen  304 HIFGTNFNNENESNDVKNELQGAEYNILS  332 (344)
T ss_pred             ccccccccCCCcccccccchhhheeeccc
Confidence            47777888888887777777 77677633

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=3.6e-10  Score=108.52  Aligned_cols=258  Identities=16%  Similarity=0.191  Sum_probs=180.0

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC-----------CCcEEEEeC
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-----------DKTVRVWQG  294 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-----------dg~i~iwd~  294 (504)
                      -+-+.|||.|.||++--.-| |.+|--.+-..++.+. |.+ |.-+.|||+.++|+|=+.           ...++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            35689999999999988776 8899765555555555 554 889999999999998653           257999999


Q ss_pred             CCCCCcceeEEecc---CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669          295 SEDGNYDCKHTLKD---HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI  371 (504)
Q Consensus       295 ~~~~~~~~~~~~~~---h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~  371 (504)
                      .++   ...+.+..   ....-.-+.|+.|+++++.-.. ..|.||+..+...+-.-.     -....|....|+|.+++
T Consensus       290 ~tG---~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-----lki~gIr~FswsP~~~l  360 (698)
T KOG2314|consen  290 ATG---LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-----LKISGIRDFSWSPTSNL  360 (698)
T ss_pred             ccc---chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-----cCCccccCcccCCCcce
Confidence            997   33343332   2222345689999999998776 568899876643322111     22357899999999988


Q ss_pred             EEEEeC-----CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeC-------C----cEEEEEcCCCcc-ee
Q 010669          372 LGTGTS-----EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-------D----GVKLWDLRKLKN-FR  434 (504)
Q Consensus       372 l~~g~~-----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~-------d----~v~vwd~~~~~~-~~  434 (504)
                      ||-=+.     -..+.+-.+.+++.+++-.-|+-.=..+-|-.+|.+|+.--+       .    ++.|+.++.... +.
T Consensus       361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve  440 (698)
T KOG2314|consen  361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE  440 (698)
T ss_pred             EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence            886432     134666777777666665545433345677788988876421       1    266777775442 33


Q ss_pred             eeecCCCCCCeeEEEECCCCCEEEEEeCc-----EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          435 SFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       435 ~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-----i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .+..   ...|...+|.|.|+.+++.+.+     +.+|.+....+.++++..|+..    ..+.+.++|.|+-
T Consensus       441 ~vel---ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~----~~N~vfwsPkG~f  506 (698)
T KOG2314|consen  441 VVEL---KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK----FANTVFWSPKGRF  506 (698)
T ss_pred             eeec---chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc----ccceEEEcCCCcE
Confidence            3333   4678999999999877765543     9999998767788999988653    5678889998873

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=8e-13  Score=132.51  Aligned_cols=223  Identities=19%  Similarity=0.296  Sum_probs=170.6

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC--cEEEEeCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--TVRVWQGS  295 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg--~i~iwd~~  295 (504)
                      .++.|....+|++|+-+.+.|++|+..|.|++|++.+|.....+.+|..+|+.+.-+.+|..+++.+.-.  -..+|++.
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            4556778999999999999999999999999999999999999999999999999998999777655433  46799987


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      ..  ....+++.    .-.++.|+.....-+.|+......+||++++....++... ..+....-++..|+|+..+++  
T Consensus      1176 s~--~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~-~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1176 ST--GGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD-TVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred             cc--cCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc-chhhhhhccccccCCCcceEe--
Confidence            53  24455553    3467888766555566666677899999999877664322 113333447899999888776  


Q ss_pred             eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                       .||  .+||+|..+.++.|......+ .=.|+|+|..++..+    .|||+|+.+.++.....    .-..+.|+..|.
T Consensus      1247 -ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF~lLh~VP~L----dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTFKLLHSVPSL----DQCAVTFNSTGD 1314 (1516)
T ss_pred             -eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHHHHHhcCccc----cceEEEeccCcc
Confidence             466  469999998888887554332 335999999888876    58999999988877654    346788999998


Q ss_pred             EEEEEe
Q 010669          456 YLAVAS  461 (504)
Q Consensus       456 ~l~~~~  461 (504)
                      .++..-
T Consensus      1315 VmYa~~ 1320 (1516)
T KOG1832|consen 1315 VMYAML 1320 (1516)
T ss_pred             chhhhh
Confidence            887654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=1e-11  Score=118.78  Aligned_cols=275  Identities=13%  Similarity=0.127  Sum_probs=179.6

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC-------CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEE
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR  290 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~  290 (504)
                      -+.+|...|.+++--.+.+-+++++.|++|++|.++.       ..+..+++.|..+|.++.|..+.++++++  ||-|.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH  807 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH  807 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence            3567888888887666788899999999999998753       24667889999999999999888777654  88999


Q ss_pred             EEeCCCCCCcceeEEeccCCcCeEEEEEcc--CCCEEE-EEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC
Q 010669          291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFV-TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP  367 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  367 (504)
                      +||.--+........-..| +.+..+..-+  +...++ .++...+|+++|.+.+.....++.....+....+.+++.-+
T Consensus       808 lWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            9997654211111111112 2333333333  333443 34778899999999988877776544445567789999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEE-EEcCCCcceeeeecCCCCCCe
Q 010669          368 DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL-WDLRKLKNFRSFESSDSETPT  445 (504)
Q Consensus       368 dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~v-wd~~~~~~~~~~~~~~~~~~v  445 (504)
                      .|+.++++-.+|+|.+.|.|+|+.+..+.........++ .|....|+....|. +.+ |-...+......+.+  ..+.
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp--pepa  963 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP--PEPA  963 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC--Ccch
Confidence            999999999999999999999999988876655554454 34556677666665 766 876655444333322  1111


Q ss_pred             eEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          446 NSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       446 ~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      .-  ...-|.-|+++...  +.||.-.........+..++...-.+..|++...|.+
T Consensus       964 hf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN 1018 (1034)
T KOG4190|consen  964 HF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLN 1018 (1034)
T ss_pred             hh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecccc
Confidence            11  11234455555444  6777421111222333333333235667777777654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.32  E-value=5.2e-09  Score=96.30  Aligned_cols=256  Identities=14%  Similarity=0.168  Sum_probs=167.8

Q ss_pred             CCcEEEEcCCCC--ce-EEEcccCccceeEEEEeeCCCEEEEEeC---CCcEEEEeCCCC-CCcceeEEeccCCcCeEEE
Q 010669          244 DTNAVLFDRPSG--QI-VTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSED-GNYDCKHTLKDHTAEVQAV  316 (504)
Q Consensus       244 dg~i~vwd~~~~--~~-~~~~~~h~~~v~~l~~s~~~~~l~s~s~---dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l  316 (504)
                      +.-|++|++.+.  +. ...+-.+.+.++-++|+|+++.|.++..   +|.|..|.++.. +.+..+........+-+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            456999988732  22 1122346677899999999998888865   477888877753 3333333322223344889


Q ss_pred             EEccCCCEEEEEeC-CCeEEEEECCC-CeEE---EEeecCCCCCC----CCCeEEEEECCCCCEEEEEeC-CCcEEEEEc
Q 010669          317 TVHATNKYFVTASL-DNTWCFYDLSS-GICL---TQVSDAGTDGR----PEGYTSAAFHPDGLILGTGTS-EALVKIWDV  386 (504)
Q Consensus       317 ~~~p~~~~l~s~s~-dg~i~iwd~~~-~~~~---~~~~~~~~~~~----~~~v~~~~~~pdg~~l~~g~~-dg~I~iwd~  386 (504)
                      +++++|++++++.. .|.|.++-++. |...   ..+...+...|    ...+.+..+.|+++++++..- -..|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999999998875 57899998865 3222   12221111111    122788999999999888753 347999999


Q ss_pred             CCCceeeee---eCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCC-c---ceeeeecC----CCCCCeeEEEECCC
Q 010669          387 KSQANVAKF---DGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKL-K---NFRSFESS----DSETPTNSVDFDHS  453 (504)
Q Consensus       387 ~~~~~~~~~---~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~-~---~~~~~~~~----~~~~~v~~i~~~~~  453 (504)
                      ..++....-   .........|.|+|+|++....++= + |.+|..... .   .++.+...    ....+...|.+++|
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d  254 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD  254 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence            877542211   1234567899999999998887764 4 999988763 2   22222211    12456778999999


Q ss_pred             CCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          454 GSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       454 g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      |+||+++...   |.+|.++........+...+.+  .-.-..+.|.+.|.
T Consensus       255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te--g~~PR~F~i~~~g~  303 (346)
T COG2706         255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE--GQFPRDFNINPSGR  303 (346)
T ss_pred             CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC--CcCCccceeCCCCC
Confidence            9999998543   9999987655555555555554  22356677766664

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=9.2e-10  Score=106.10  Aligned_cols=250  Identities=17%  Similarity=0.203  Sum_probs=158.0

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEE-----eC-----CCcEEEEeC
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-----SA-----DKTVRVWQG  294 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-----s~-----dg~i~iwd~  294 (504)
                      ++...+++++|++++.+. +..+.|++..++..+.+....  .+.++.|+|.|++|.+-     ..     .-.+++|++
T Consensus        36 ~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v  112 (566)
T KOG2315|consen   36 PCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV  112 (566)
T ss_pred             cceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence            367788999999888765 668999998888655444433  78999999999988753     12     235779998


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC--CEE
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--LIL  372 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg--~~l  372 (504)
                      .++   .....+......-++..|++|..+.+- -..+.+++|++.+.+.....      -|...++.+.++|.+  ..+
T Consensus       113 et~---~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~k------l~~~~i~~f~lSpgp~~~~v  182 (566)
T KOG2315|consen  113 ETG---VQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHK------LSVSGITMLSLSPGPEPPFV  182 (566)
T ss_pred             ccc---eehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccceeee------eeccceeeEEecCCCCCceE
Confidence            873   222222222222267888877654322 12356777777653322211      122334444444431  112


Q ss_pred             EE-----EeCCCcE---------------------------------------------------------EEEEcCCCc
Q 010669          373 GT-----GTSEALV---------------------------------------------------------KIWDVKSQA  390 (504)
Q Consensus       373 ~~-----g~~dg~I---------------------------------------------------------~iwd~~~~~  390 (504)
                      |+     ++.-+.|                                                         +++++....
T Consensus       183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s  262 (566)
T KOG2315|consen  183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES  262 (566)
T ss_pred             EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence            21     1222233                                                         344433112


Q ss_pred             eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC--c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc----
Q 010669          391 NVAKFDGHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----  463 (504)
Q Consensus       391 ~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d--~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d----  463 (504)
                      ....+. ..++|.++.|+++|+-++++-.-  . +.|||++ +..+..+.    .++-+++-|+|.|++++.+|-+    
T Consensus       263 ~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G  336 (566)
T KOG2315|consen  263 VSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPG  336 (566)
T ss_pred             EEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEEEEeecCCCCC
Confidence            222222 36899999999999877766433  3 9999987 44544443    4677889999999999988765    


Q ss_pred             -EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          464 -IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       464 -i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                       +.|||+    .+.+++..+..-    .-+-++|+|+|+
T Consensus       337 ~mEvwDv----~n~K~i~~~~a~----~tt~~eW~PdGe  367 (566)
T KOG2315|consen  337 DMEVWDV----PNRKLIAKFKAA----NTTVFEWSPDGE  367 (566)
T ss_pred             ceEEEec----cchhhccccccC----CceEEEEcCCCc
Confidence             999999    668888888653    457789999996

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=99.28  E-value=2.6e-12  Score=87.31  Aligned_cols=42  Identities=43%  Similarity=0.724  Sum_probs=33.4

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC--CCCCCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG--KCPVTG   42 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~   42 (504)
                      +.|+||+.++++||.+.++||+|||+.|++||+.++  +||++|
T Consensus        12 ~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   12 LKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             cCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            579999999999999999999999999999996555  499987

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=1e-11  Score=118.68  Aligned_cols=200  Identities=24%  Similarity=0.385  Sum_probs=145.3

Q ss_pred             EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC----CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCe
Q 010669          258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG----NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT  333 (504)
Q Consensus       258 ~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~  333 (504)
                      +..+.||...|..++-..+.+-+++++.|++|++|.++..+    ...|..+++.|..+|.++.|-.+.++++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            45677999999988777778889999999999999987543    234778889999999999999888888765  899


Q ss_pred             EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCceeeeee-----CCCCCeEEEEE
Q 010669          334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEALVKIWDVKSQANVAKFD-----GHVGAVTAISF  407 (504)
Q Consensus       334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g-~~dg~I~iwd~~~~~~~~~~~-----~~~~~i~~l~~  407 (504)
                      |++||.--+..+..+......+....|.|+.- -+..++..| +...+|+++|.|...-...++     +.++.+.+++.
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            99999988877765553322222223333321 144555555 678899999999887655554     34567899999


Q ss_pred             cCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          408 SENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       408 s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      .+.|++|+++-.+| |.+.|.|+|+.+..+....  .....++ .|+.+.|+....|
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpme--cdllqla-apsdq~L~~sald  938 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPME--CDLLQLA-APSDQALAQSALD  938 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCCceeccCCccc--chhhhhc-CchhHHHHhhccc
Confidence            99999999998888 9999999999887775432  1222222 3455555554444

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.25  E-value=1.4e-09  Score=98.74  Aligned_cols=199  Identities=16%  Similarity=0.313  Sum_probs=144.5

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCC----CCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP----SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd  293 (504)
                      ++..-..+++++.+.++...|++|-.+|++.-+.+.    ....++.+..|...|..+.|+....++++.+.|..+. |.
T Consensus        63 I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~h  141 (404)
T KOG1409|consen   63 IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WH  141 (404)
T ss_pred             hhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EE
Confidence            344456789999999999999999999999988653    3455677778999999999998888999999997764 53


Q ss_pred             C-CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC--eEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669          294 G-SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       294 ~-~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~pdg~  370 (504)
                      . +.+.... -..+.   ...+++.+.-  .+.+.|...|.|.+-.+...  ..+..+.     +|...+.+++|.+...
T Consensus       142 c~e~~~~lg-~Y~~~---~~~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~-----~h~~~~~~l~Wd~~~~  210 (404)
T KOG1409|consen  142 CTESGNRLG-GYNFE---TPASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFN-----GHTGEVTCLKWDPGQR  210 (404)
T ss_pred             eeccCCccc-ceEee---ccCCCCceee--EEEEecccccceEEEEEeecCCceEEEEc-----CcccceEEEEEcCCCc
Confidence            3 2221100 01110   1111111211  15566666676666554433  3333333     7888999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCc-eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC
Q 010669          371 ILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR  428 (504)
Q Consensus       371 ~l~~g~~dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~  428 (504)
                      +|++|..|..+.+||+.-.+ ....+.+|...|..+...+--+.|++++.|+ |.+||+.
T Consensus       211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            99999999999999996554 3456678999999998888888999999998 9999975

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.25  E-value=2.5e-10  Score=103.55  Aligned_cols=217  Identities=14%  Similarity=0.277  Sum_probs=148.1

Q ss_pred             ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC--CcceeEEeccCC------------cCeEEEEEccCCC--EEEEE
Q 010669          265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--NYDCKHTLKDHT------------AEVQAVTVHATNK--YFVTA  328 (504)
Q Consensus       265 ~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~~p~~~--~l~s~  328 (504)
                      ..-|.++.|...|.+|++|..+|.|.++.-....  .+.....++.|.            ..|..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4568999999999999999999999999654322  222344444453            3588899988664  78888


Q ss_pred             eCCCeEEEEECCCCeEEE--------------------Eee-----------cCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          329 SLDNTWCFYDLSSGICLT--------------------QVS-----------DAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       329 s~dg~i~iwd~~~~~~~~--------------------~~~-----------~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                      +.|.+|++|.+.......                    .+.           ..-...|...|+++.++.|+..++++ .
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence            899999999886432211                    000           00124677789999999999988886 5


Q ss_pred             CCcEEEEEcCCCce---eeeeeCCC-----CCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcc----eeeeecCC---
Q 010669          378 EALVKIWDVKSQAN---VAKFDGHV-----GAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN----FRSFESSD---  440 (504)
Q Consensus       378 dg~I~iwd~~~~~~---~~~~~~~~-----~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~----~~~~~~~~---  440 (504)
                      |=.|-+|++.-...   +..++++.     .-|++..|+|. ..+++-++..| |++-|+|....    .+.+..+.   
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            67899999864322   33334443     36889999994 45555555556 99999994321    11111111   


Q ss_pred             -------CCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCC
Q 010669          441 -------SETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       441 -------~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                             .-..|..+.|+++|+|+++-..- +++||++.   ..+.+.+++.|
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nm---e~~pv~t~~vh  313 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNM---EAKPVETYPVH  313 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccc---cCCcceEEeeh
Confidence                   02367889999999999998877 99999954   34455555555

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.25  E-value=2.9e-10  Score=116.88  Aligned_cols=181  Identities=11%  Similarity=0.185  Sum_probs=140.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcC-----eEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 010669          276 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE-----VQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD  350 (504)
Q Consensus       276 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~-----v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  350 (504)
                      +...++.++.++.+.+||....   .....+ .+...     ..-+-++++.-++++|+.-+.|.+|+....+....   
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~---~~~~~i-~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~---  170 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNS---SVLSKI-QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR---  170 (967)
T ss_pred             hcceEEEEEcCceEEEEecccC---ceehhc-CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcce---
Confidence            4556888888889999998764   222222 22222     12233455666899999999999999873332222   


Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee-eeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC
Q 010669          351 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA-KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR  428 (504)
Q Consensus       351 ~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~  428 (504)
                        ..+|.+.+..+.|+-||.++++.++|.++|+|++.+.+... ..-+|...|..++|.|+  .+++++.|- .++|+..
T Consensus       171 --l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  171 --LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             --ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence              33899999999999999999999999999999999987665 56679999999999998  899999997 9999765


Q ss_pred             CCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       429 ~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                       +..+..+..|. ...++.++.++....+++++.|  +++|++
T Consensus       247 -~~~l~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  247 -GTQLEVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             -cceehhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence             34444666553 5679999999999999999999  999997

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.24  E-value=4.5e-10  Score=101.91  Aligned_cols=244  Identities=18%  Similarity=0.260  Sum_probs=178.5

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEc-CCCCceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFD-RPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd-~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ..+|.+.|++...-|..+-+++.+.|.+++||- .+.++.-..+. ....+++++.+.++...|+.|-.+|++.-+.+..
T Consensus        20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~se   99 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSE   99 (404)
T ss_pred             hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhh
Confidence            456777888888888888899999999999994 44555544443 3457789999999999999999999999887654


Q ss_pred             C-CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          297 D-GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       297 ~-~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      . ......+....|...|..+.|+-....+++.+.|..+.-.-.+.+..+..+...      ..-+++.+.-.  +...|
T Consensus       100 dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~------~~~t~~~~d~~--~~fvG  171 (404)
T KOG1409|consen  100 DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE------TPASALQFDAL--YAFVG  171 (404)
T ss_pred             hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee------ccCCCCceeeE--EEEec
Confidence            3 112344555689999999999988999999999988776555555444333210      01111222111  55666


Q ss_pred             eCCCcEEEEEc--CCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          376 TSEALVKIWDV--KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       376 ~~dg~I~iwd~--~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      ...|.|..-.+  ..-.++.++.+|.+.+++++|.+....|++|..|. |.+||+--.+... +....+...|..+..-+
T Consensus       172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~-~el~gh~~kV~~l~~~~  250 (404)
T KOG1409|consen  172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA-YELQGHNDKVQALSYAQ  250 (404)
T ss_pred             ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee-eeeccchhhhhhhhhhh
Confidence            66776665544  34467889999999999999999999999999998 9999997554332 33333467788888777


Q ss_pred             CCCEEEEEeCc--EEEEEeec
Q 010669          453 SGSYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~~~~  471 (504)
                      --+.+++++.|  |-+|+++.
T Consensus       251 ~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  251 HTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hheeeeeccCCCeEEEEeccc
Confidence            78888999888  99999843

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.23  E-value=2.1e-08  Score=110.68  Aligned_cols=239  Identities=11%  Similarity=0.179  Sum_probs=154.3

Q ss_pred             EEEEeccC-CCEEEEEeCCCcEEEEcCCCCceEEEccc--C------------ccceeEEEEeeCCCEEEEEe-CCCcEE
Q 010669          227 VSLDIHYS-KDVIATGGVDTNAVLFDRPSGQIVTTLSG--H------------SKKVTSVKFVTEGDLFLTGS-ADKTVR  290 (504)
Q Consensus       227 ~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h------------~~~v~~l~~s~~~~~l~s~s-~dg~i~  290 (504)
                      ..++++++ ++++++-+.++.|.+||.. +..+..+.+  .            -.....+++.++++.|+++. .++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35678764 6677777788899999975 444433322  1            12357899998887665554 457899


Q ss_pred             EEeCCCCCCcceeEEeccC-----------------CcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q 010669          291 VWQGSEDGNYDCKHTLKDH-----------------TAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAG  352 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~~h-----------------~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  352 (504)
                      ++|..++    .+.++.+-                 -..-.+++++| ++..+++.+.++.|++||..++.... +...+
T Consensus       650 ~id~~~~----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G  724 (1057)
T PLN02919        650 EIDFVNE----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDG  724 (1057)
T ss_pred             EEecCCC----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCC
Confidence            9998663    23322110                 01236789999 56666777788999999998875432 21110


Q ss_pred             C----C------CCCCCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCceeeee-------------eCC--------CC
Q 010669          353 T----D------GRPEGYTSAAFHPDGL-ILGTGTSEALVKIWDVKSQANVAKF-------------DGH--------VG  400 (504)
Q Consensus       353 ~----~------~~~~~v~~~~~~pdg~-~l~~g~~dg~I~iwd~~~~~~~~~~-------------~~~--------~~  400 (504)
                      .    .      ..-.....++++|+|. ++++-+.++.|++||+.++......             -..        -.
T Consensus       725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~  804 (1057)
T PLN02919        725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ  804 (1057)
T ss_pred             ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence            0    0      0113456799999988 5555566799999999876432111             000        11


Q ss_pred             CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC-----------CCCCCeeEEEECCCCCEEEEEeCc--EEE
Q 010669          401 AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS-----------DSETPTNSVDFDHSGSYLAVASAD--IRV  466 (504)
Q Consensus       401 ~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~-----------~~~~~v~~i~~~~~g~~l~~~~~d--i~v  466 (504)
                      ....++|+++|.++++-+.++ |++||..++.........           ..-.....++++++|+++++-+.+  |++
T Consensus       805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv  884 (1057)
T PLN02919        805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY  884 (1057)
T ss_pred             CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence            346899999998777777776 999999876544222110           011256789999999977776655  999


Q ss_pred             EEeec
Q 010669          467 YQVAS  471 (504)
Q Consensus       467 w~~~~  471 (504)
                      |++..
T Consensus       885 id~~~  889 (1057)
T PLN02919        885 LDLNK  889 (1057)
T ss_pred             EECCC
Confidence            99844

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.23  E-value=7e-09  Score=98.05  Aligned_cols=213  Identities=18%  Similarity=0.196  Sum_probs=154.4

Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCCceEEEcc-c--------Ccccee---EEE-Eee-CCCEEEEEeCCCcEEEEeCCCCC
Q 010669          233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLS-G--------HSKKVT---SVK-FVT-EGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       233 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~--------h~~~v~---~l~-~s~-~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      .||+.++- +..|.|++||..+..... +. +        ....+.   -+. |++ +|++++..|. |...|.+...+ 
T Consensus       276 sDGkrIvF-q~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~-  351 (668)
T COG4946         276 SDGKRIVF-QNAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG-  351 (668)
T ss_pred             CCCcEEEE-ecCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC-
Confidence            46665554 356789999987654322 21 1        001111   111 333 6888887776 67777766543 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC-eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                        -.+ . -+|.+.|.-..+..+++-++.|..|| .+-++|.++++......      .-+.|.++..+++|+.++++..
T Consensus       352 --~~i-q-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~------~lg~I~av~vs~dGK~~vvaNd  421 (668)
T COG4946         352 --YSI-Q-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK------DLGNIEAVKVSPDGKKVVVAND  421 (668)
T ss_pred             --eeE-E-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC------CccceEEEEEcCCCcEEEEEcC
Confidence              222 2 36778899888888888999999999 89999999987655443      2356999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-----EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-----VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-----v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      ...|.++|+.+++....-+...+-|+...|+|+++++|-+--+|     |+++|+..++....-..   ...=.+-+|+|
T Consensus       422 r~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaFD~  498 (668)
T COG4946         422 RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAFDP  498 (668)
T ss_pred             ceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---cccccCcccCC
Confidence            99999999999987666566678899999999999999886653     89999998776554332   23345678999


Q ss_pred             CCCEEEEEeC
Q 010669          453 SGSYLAVASA  462 (504)
Q Consensus       453 ~g~~l~~~~~  462 (504)
                      +|++|..-+.
T Consensus       499 d~ryLYfLs~  508 (668)
T COG4946         499 DGRYLYFLSA  508 (668)
T ss_pred             CCcEEEEEec
Confidence            9999886654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.19  E-value=1e-08  Score=97.87  Aligned_cols=259  Identities=15%  Similarity=0.159  Sum_probs=175.8

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCC---------------cEEEEcCCCCceEEEcccCccc--ee-EEEEeeCCCEEEEE
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDT---------------NAVLFDRPSGQIVTTLSGHSKK--VT-SVKFVTEGDLFLTG  283 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg---------------~i~vwd~~~~~~~~~~~~h~~~--v~-~l~~s~~~~~l~s~  283 (504)
                      ..+.|..+.|+|.+++|.+-+..+               .+.+||..+|.++..+.+...+  .+ -+.|+-+.++++-.
T Consensus        70 ~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv  149 (561)
T COG5354          70 RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV  149 (561)
T ss_pred             ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence            346789999999999999976543               4999999999999999876665  55 67888888876544


Q ss_pred             eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCC--EEEE-----EeCCCeEEEEECCCCeEEEEeecCCCCCC
Q 010669          284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK--YFVT-----ASLDNTWCFYDLSSGICLTQVSDAGTDGR  356 (504)
Q Consensus       284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~l~s-----~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  356 (504)
                      . ...+.|+++...-.......++  ...|....|+|.++  .|+.     .+.++.+++|.+..+..+......     
T Consensus       150 v-~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-----  221 (561)
T COG5354         150 V-GSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-----  221 (561)
T ss_pred             c-cCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-----
Confidence            2 3469999972211111222222  35688889999644  3343     356788999999877665544321     


Q ss_pred             CCCeEEEEECCCCCEEEEEe-----------CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEe--CCc-E
Q 010669          357 PEGYTSAAFHPDGLILGTGT-----------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA--HDG-V  422 (504)
Q Consensus       357 ~~~v~~~~~~pdg~~l~~g~-----------~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~--~d~-v  422 (504)
                      ...-..+.|++.|.++++--           ....++|++++... +.....-.++|...+|.|.+..+++.+  ... +
T Consensus       222 k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~  300 (561)
T COG5354         222 KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASV  300 (561)
T ss_pred             eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccce
Confidence            12235688999888776521           12457888886433 222224578999999999887776665  334 9


Q ss_pred             EEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-----EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669          423 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       423 ~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-----i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~  497 (504)
                      .++|++.. ....+  +  ...-+.+.|+|.+++++.++-+     +-+|+.   .....++..+.+.    .-+-++|+
T Consensus       301 s~~~lr~N-l~~~~--P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~---~~rf~~~~~~~~~----n~s~~~ws  368 (561)
T COG5354         301 SVFDLRGN-LRFYF--P--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP---AGRFKVAGAFNGL----NTSYCDWS  368 (561)
T ss_pred             eecccccc-eEEec--C--CcccccccccCcccEEEEecCCccccceEEecc---CCceEEEEEeecC----CceEeecc
Confidence            99999865 32222  2  3455678899999999998766     888986   3456666677653    34556778


Q ss_pred             ecCc
Q 010669          498 VLGQ  501 (504)
Q Consensus       498 ~~g~  501 (504)
                      |+||
T Consensus       369 pd~q  372 (561)
T COG5354         369 PDGQ  372 (561)
T ss_pred             CCce
Confidence            8876

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=4.5e-09  Score=101.14  Aligned_cols=244  Identities=13%  Similarity=0.245  Sum_probs=148.0

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeC-----------CCcEEEEcCCCCceEEEcccC--ccce-eEEEEeeCCCEEEEE
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGV-----------DTNAVLFDRPSGQIVTTLSGH--SKKV-TSVKFVTEGDLFLTG  283 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~-----------dg~i~vwd~~~~~~~~~~~~h--~~~v-~~l~~s~~~~~l~s~  283 (504)
                      +++.....|.-++|||..+||+|-+.           ...+.|||+.+|...+.+...  ...+ .-..||.|+++++--
T Consensus       244 ~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm  323 (698)
T KOG2314|consen  244 IQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM  323 (698)
T ss_pred             HHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEe
Confidence            44445578999999999999999753           246899999999988877642  2223 346899999998876


Q ss_pred             eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC----------------CCe---EEEEECCC---
Q 010669          284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL----------------DNT---WCFYDLSS---  341 (504)
Q Consensus       284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~----------------dg~---i~iwd~~~---  341 (504)
                      ..| +|.||+...-   ..+..-.-.-..|....|+|.++.|+--+.                ...   ..++++..   
T Consensus       324 ~~~-sisIyEtpsf---~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckL  399 (698)
T KOG2314|consen  324 TGN-SISIYETPSF---MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKL  399 (698)
T ss_pred             ccc-eEEEEecCce---eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEE
Confidence            664 6888875431   111110112234555666665554432210                011   11222111   


Q ss_pred             -----CeEEE---------------------EeecCC----CCCCCCCeEEEEECCCCCEEEEEeC---CCcEEEEEcCC
Q 010669          342 -----GICLT---------------------QVSDAG----TDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWDVKS  388 (504)
Q Consensus       342 -----~~~~~---------------------~~~~~~----~~~~~~~v~~~~~~pdg~~l~~g~~---dg~I~iwd~~~  388 (504)
                           |..+.                     .+....    .-.-...|...+|-|.|+.+++-+.   ..++.+|-+.+
T Consensus       400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence                 11000                     000000    0012345778999999988876543   35788998873


Q ss_pred             -C---ceeeeeeCCCCCeEEEEEcCCCcEEEEEeC---Cc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEE
Q 010669          389 -Q---ANVAKFDGHVGAVTAISFSENGYYLATAAH---DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA  460 (504)
Q Consensus       389 -~---~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~---d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~  460 (504)
                       .   +.+..+..  ...+.+.|+|.|++++.+.-   .| +.++|+....... ..... ....+.+.|+|.|+|++++
T Consensus       480 ~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~-~~~~e-h~~at~veWDPtGRYvvT~  555 (698)
T KOG2314|consen  480 NIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKD-TASPE-HFAATEVEWDPTGRYVVTS  555 (698)
T ss_pred             CCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhh-ccCcc-ccccccceECCCCCEEEEe
Confidence             2   23444432  45788999999999988754   35 9999987432222 11122 2457789999999999998


Q ss_pred             eCc--------EEEEEe
Q 010669          461 SAD--------IRVYQV  469 (504)
Q Consensus       461 ~~d--------i~vw~~  469 (504)
                      +.-        -++|++
T Consensus       556 ss~wrhk~d~GYri~tf  572 (698)
T KOG2314|consen  556 SSSWRHKVDNGYRIFTF  572 (698)
T ss_pred             eehhhhccccceEEEEe
Confidence            754        566665

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.1e-09  Score=102.88  Aligned_cols=251  Identities=15%  Similarity=0.157  Sum_probs=176.8

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC---CceEEEcccCccceeEEEEeeCCCEEEEEeC-CCcEEEEeCCCC
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS---GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSED  297 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg~i~iwd~~~~  297 (504)
                      |++.|+.+... -.+++.+++.||.++.|.-..   -+.+..+..|.+.|.+++.+-++.++.|.+. |..++++|+.+-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            56667766544 468999999999999997543   2445566788999999999999999999777 999999998764


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCC-C-EEE-EEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATN-K-YFV-TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~-~-~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      ..... ..+..-.+.+..+ .++.. . .++ +.-.+|.+.++|-....+...+.   ..-|..+|.++.+.+-+..+.+
T Consensus        87 Dminm-iKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f---kklH~sPV~~i~y~qa~Ds~vS  161 (558)
T KOG0882|consen   87 DMINM-IKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF---KKLHFSPVKKIRYNQAGDSAVS  161 (558)
T ss_pred             chhhh-cccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcccee---cccccCceEEEEeeccccceee
Confidence            21111 1111122222222 22211 1 333 33457899999987665433333   2367789999999999999999


Q ss_pred             EeCCCcEEEEEcCC------Ccee---------eeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec
Q 010669          375 GTSEALVKIWDVKS------QANV---------AKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       375 g~~dg~I~iwd~~~------~~~~---------~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~  438 (504)
                      ....|.|..|....      .+..         ..+.......+++.|+|+|..+.+-+.|. |+++++++++.++.+..
T Consensus       162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence            99999999998762      1111         11222345788999999999999999887 99999999887665532


Q ss_pred             CCC-------------------------------CCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEc
Q 010669          439 SDS-------------------------------ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTF  482 (504)
Q Consensus       439 ~~~-------------------------------~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~  482 (504)
                      ...                               ...-+.+.|+.+|++|+.|+-- |+|.++    .+..+.+.+
T Consensus       242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~----~tn~v~ri~  313 (558)
T KOG0882|consen  242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINL----DTNTVVRIL  313 (558)
T ss_pred             cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEe----ecCeEEEEe
Confidence            110                               1134568899999999999887 999999    556666666

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.15  E-value=2.1e-10  Score=123.42  Aligned_cols=196  Identities=20%  Similarity=0.343  Sum_probs=148.9

Q ss_pred             cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 010669          263 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG  342 (504)
Q Consensus       263 ~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~  342 (504)
                      .+-..|.++.-+|...+.++|+.||.|++|....+....+.++. +. ..|+.+.|+..|+.+..+..||.+.+|.+. .
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            35566788888888889999999999999998776433333332 33 889999999999999999999999999987 2


Q ss_pred             eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe---CCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669          343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAA  418 (504)
Q Consensus       343 ~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~---~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~  418 (504)
                      +......     .|....+.+.|-.  ..+++++   .++.+.+||.--. .....-..|.+.++++++.|....|++|+
T Consensus      2283 k~~~s~q-----chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2283 KPYTSWQ-----CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred             cceeccc-----cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence            2222222     5566677777765  4555543   5688999997432 22222267999999999999999999999


Q ss_pred             CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccC
Q 010669          419 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       419 ~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      .+| |++||++..+..+.+..           ++ ...++++|+..  ++||++    .....+.+|+.
T Consensus      2356 r~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~----s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRL----SEFGLLHTFPS 2408 (2439)
T ss_pred             CcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEc----cccchhhcCch
Confidence            999 99999998887777754           45 56788888776  999999    55677777754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.14  E-value=5.5e-09  Score=91.91  Aligned_cols=193  Identities=9%  Similarity=0.025  Sum_probs=137.5

Q ss_pred             EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEE
Q 010669          237 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAV  316 (504)
Q Consensus       237 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l  316 (504)
                      -+..++.|.++++.++..+.....+.-..-.+.++.++++++++++.+....|..|.+...+.+..........+.-.+.
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~  209 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN  209 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence            34556677777777765443222221111237899999999999999999999999998865544333444445556788


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC--CEEEEEeCCCcEEEEEcCCCceeee
Q 010669          317 TVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--LILGTGTSEALVKIWDVKSQANVAK  394 (504)
Q Consensus       317 ~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg--~~l~~g~~dg~I~iwd~~~~~~~~~  394 (504)
                      .|+.....||+++.||++.|||++...............|.+.+..+.|++.|  .+|+..-.-+.+.+.|+|+++....
T Consensus       210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence            89999999999999999999999986555444433344688999999999855  3555555567899999999875544


Q ss_pred             ee-------CCCC-CeEEEEEcCCCcEEEEEeCCcEEEEEcCC
Q 010669          395 FD-------GHVG-AVTAISFSENGYYLATAAHDGVKLWDLRK  429 (504)
Q Consensus       395 ~~-------~~~~-~i~~l~~s~~g~~l~s~~~d~v~vwd~~~  429 (504)
                      +.       .|.. .|..-.|+.++.-+.+.+++.+.-|++.+
T Consensus       290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~s  332 (344)
T KOG4532|consen  290 IVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILS  332 (344)
T ss_pred             EecCccccccccccccccccccCCCcccccccchhhheeeccc
Confidence            32       2333 37888888888777777777666676654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.12  E-value=6.5e-08  Score=104.86  Aligned_cols=265  Identities=11%  Similarity=0.153  Sum_probs=168.1

Q ss_pred             CCeEEEEeccCCCEE--EEEeCCC--cEEEEcCCCC---ceEEEcc-----cCccceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669          224 PGIVSLDIHYSKDVI--ATGGVDT--NAVLFDRPSG---QIVTTLS-----GHSKKVTSVKFVTEGDLFLTGSADKTVRV  291 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l--~sg~~dg--~i~vwd~~~~---~~~~~~~-----~h~~~v~~l~~s~~~~~l~s~s~dg~i~i  291 (504)
                      ..+...+|.+..+.+  +++....  .|.+......   +.+..+.     ...+.|.++.|.++...++.+..+|.|.+
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~  101 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL  101 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence            356777777766533  3333322  2333332222   2334443     24567999999999999999999999999


Q ss_pred             E----eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEE----------------------
Q 010669          292 W----QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL----------------------  345 (504)
Q Consensus       292 w----d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~----------------------  345 (504)
                      .    +.... ..+.+.   .-...|.+++|+||+..++..+.++++.+.+-. ...+                      
T Consensus       102 ~~~~~~~~~~-~~E~VG---~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGk  176 (928)
T PF04762_consen  102 VREDPDPDED-EIEIVG---SVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGK  176 (928)
T ss_pred             EEccCCCCCc-eeEEEE---EEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCc
Confidence            9    55442 223333   335679999999999999999999988775421 1111                      


Q ss_pred             --EEeecCCCC-------------------CCCCCeEEEEECCCCCEEEEEeC---C---CcEEEEEcCCCceeeeeeCC
Q 010669          346 --TQVSDAGTD-------------------GRPEGYTSAAFHPDGLILGTGTS---E---ALVKIWDVKSQANVAKFDGH  398 (504)
Q Consensus       346 --~~~~~~~~~-------------------~~~~~v~~~~~~pdg~~l~~g~~---d---g~I~iwd~~~~~~~~~~~~~  398 (504)
                        .++.+...+                   .....-..++|-.||.+||+.+-   .   ..|+||+- .|....+-..-
T Consensus       177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v  255 (928)
T PF04762_consen  177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPV  255 (928)
T ss_pred             ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccC
Confidence              011000000                   02235568899999999999874   2   47999995 46554444433


Q ss_pred             CCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecC--CCCCCeeEEEECCCCCEEEEEeCc-EEEEEeec
Q 010669          399 VGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESS--DSETPTNSVDFDHSGSYLAVASAD-IRVYQVAS  471 (504)
Q Consensus       399 ~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~--~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~  471 (504)
                      .+--.+++|.|.|.++|+....   . |.+|.- +|-....|...  .....|..+.|++|+..||+.-.| |.+|-...
T Consensus       256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~N  334 (928)
T PF04762_consen  256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSN  334 (928)
T ss_pred             CCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeC
Confidence            4445678999999999988652   2 788874 34333334432  235679999999999999999888 99998733


Q ss_pred             cCccceeEEEccCCCCCCceeEEEEee
Q 010669          472 VKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       472 ~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                        ..|-.-+.+.-. ....+..+.|.|
T Consensus       335 --YHWYLKqei~~~-~~~~~~~~~Wdp  358 (928)
T PF04762_consen  335 --YHWYLKQEIRFS-SSESVNFVKWDP  358 (928)
T ss_pred             --CEEEEEEEEEcc-CCCCCCceEECC
Confidence              456665555432 122333355554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=3e-08  Score=98.83  Aligned_cols=190  Identities=10%  Similarity=0.031  Sum_probs=123.2

Q ss_pred             CeEEEEeccCCCE-EEEEeC---CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEE-EeCC--CcEEEEeCCCC
Q 010669          225 GIVSLDIHYSKDV-IATGGV---DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLT-GSAD--KTVRVWQGSED  297 (504)
Q Consensus       225 ~I~~~~~s~~~~~-l~sg~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~s~d--g~i~iwd~~~~  297 (504)
                      .+..-.|+|||+. ++..+.   +..|+++|+.+++...... ..+......|+|||+.++. .+.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6778999999984 554433   3569999998886544333 4455667889999986653 4434  45777777653


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                         . ...+..+........|+|||+.|+..+. .+  .|.++|+.++........    +.    ....|+|||+.++.
T Consensus       268 ---~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----g~----~~~~~SPDG~~Ia~  335 (419)
T PRK04043        268 ---T-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----GK----NNSSVSTYKNYIVY  335 (419)
T ss_pred             ---c-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC----CC----cCceECCCCCEEEE
Confidence               2 2333333333445689999997776664 33  688889988766443321    11    12489999998877


Q ss_pred             EeCC---------CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCC
Q 010669          375 GTSE---------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRK  429 (504)
Q Consensus       375 g~~d---------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~  429 (504)
                      ....         ..|.+.|+.++... .+... .......|+|||+.|+..+..   . +.+.++..
T Consensus       336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        336 SSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             EEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            6543         36888898777543 33322 233458899999988776544   2 67777754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.12  E-value=1.7e-07  Score=89.68  Aligned_cols=205  Identities=14%  Similarity=0.173  Sum_probs=137.6

Q ss_pred             eccCCCEEEEEeC----------CCcEEEEcCCCCceEEEcccCcc-------ceeEEEEeeCCCEEEEEe-C-CCcEEE
Q 010669          231 IHYSKDVIATGGV----------DTNAVLFDRPSGQIVTTLSGHSK-------KVTSVKFVTEGDLFLTGS-A-DKTVRV  291 (504)
Q Consensus       231 ~s~~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~s~~~~~l~s~s-~-dg~i~i  291 (504)
                      ++|||+.|+++..          +..|.+||..+.+.+..+.....       ....++++|||++|+... . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999997766654          78999999999999988874222       234788999999988776 3 688999


Q ss_pred             EeCCCCCCcc------eeEEecc-------C--C-------------cCeEEE--------------EEcc-CCCEEEEE
Q 010669          292 WQGSEDGNYD------CKHTLKD-------H--T-------------AEVQAV--------------TVHA-TNKYFVTA  328 (504)
Q Consensus       292 wd~~~~~~~~------~~~~~~~-------h--~-------------~~v~~l--------------~~~p-~~~~l~s~  328 (504)
                      .|+.+.....      |...+..       |  .             ..+...              .|.+ +|.+++..
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence            9977642110      0000000       0  0             001111              1223 66666665


Q ss_pred             eCCCeEEEEECCCCe-----EEEEeecC--CCCCCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEEcCCCce
Q 010669          329 SLDNTWCFYDLSSGI-----CLTQVSDA--GTDGRPEGYTSAAFHPDGLILGTGT----------SEALVKIWDVKSQAN  391 (504)
Q Consensus       329 s~dg~i~iwd~~~~~-----~~~~~~~~--~~~~~~~~v~~~~~~pdg~~l~~g~----------~dg~I~iwd~~~~~~  391 (504)
                      .. |.|.+.|+....     ....+...  ...-....+.-++++++++.+++..          ..+.|.++|..+++.
T Consensus       213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv  291 (352)
T TIGR02658       213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR  291 (352)
T ss_pred             cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence            55 999999964432     22222111  0112344556699999999888742          225799999999999


Q ss_pred             eeeeeCCCCCeEEEEEcCCCc-EEEEEeC-Cc-EEEEEcCCCcceeeee
Q 010669          392 VAKFDGHVGAVTAISFSENGY-YLATAAH-DG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~g~-~l~s~~~-d~-v~vwd~~~~~~~~~~~  437 (504)
                      +..+.. ...+..++|+|||+ +|++.+. ++ |.++|..+++.+.++.
T Consensus       292 i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       292 LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            988873 34789999999999 7777764 45 9999999999988883

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.11  E-value=1.6e-08  Score=96.69  Aligned_cols=233  Identities=14%  Similarity=0.157  Sum_probs=157.3

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC---------------
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK---------------  287 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg---------------  287 (504)
                      .-++..++|||.|.+|++....| |.+|.-.....+..+. | ..|..+.|+|.+++|.+-+..+               
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n  108 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN  108 (561)
T ss_pred             CcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence            34688899999999999887665 8899877766555555 3 3489999999999999875443               


Q ss_pred             cEEEEeCCCCCCcceeEEeccCCcC--eE-EEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEE
Q 010669          288 TVRVWQGSEDGNYDCKHTLKDHTAE--VQ-AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA  364 (504)
Q Consensus       288 ~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  364 (504)
                      .+.+||+.++   ..+..+.....+  .+ -+.|+-+.++++-. -...++|+++ ++.... ...  ..-....+....
T Consensus       109 ~~~vwd~~sg---~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~-~p~--~~lr~~gi~dFs  180 (561)
T COG5354         109 NVFVWDIASG---MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEE-HPF--KNLRPVGILDFS  180 (561)
T ss_pred             ceeEEeccCc---eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCcccc-Cch--hhccccceeeEE
Confidence            4999999886   566666555444  44 67888888876654 3457899997 333221 110  111235788999


Q ss_pred             ECCCC--CEEEE-----EeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEe------------CCcEEEE
Q 010669          365 FHPDG--LILGT-----GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA------------HDGVKLW  425 (504)
Q Consensus       365 ~~pdg--~~l~~-----g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~------------~d~v~vw  425 (504)
                      |+|.|  ..|+.     ++..+.+++|.+..++.+.+-.-....=..+.|.+.|.+|+.-.            +.+++++
T Consensus       181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~  260 (561)
T COG5354         181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL  260 (561)
T ss_pred             ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence            99953  34443     45678999999987665544322222334688888888776531            1238888


Q ss_pred             EcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEe-Cc---EEEEEe
Q 010669          426 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS-AD---IRVYQV  469 (504)
Q Consensus       426 d~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~-~d---i~vw~~  469 (504)
                      +++...+....   +..++|..++|.|.++.+++.+ ..   +.++++
T Consensus       261 ~~~e~~i~V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         261 RITERSIPVEK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL  305 (561)
T ss_pred             eecccccceec---cccccceeeeecccCCceeEEecccccceeeccc
Confidence            88743332222   2267999999999887777665 33   777876

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.11  E-value=5e-07  Score=83.98  Aligned_cols=218  Identities=15%  Similarity=0.157  Sum_probs=144.6

Q ss_pred             EEEecc-CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEe-eCCCEEEEEeCCCcEEEEeCCCCCCcceeEE
Q 010669          228 SLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV-TEGDLFLTGSADKTVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       228 ~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  305 (504)
                      ++.|.+ ++.++++--..+.|+.|+..++.... +....  ...+++. +++ .|+.+..+ .+.++|..++ ....+..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g-~~~~~~~   77 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTG-KVTVLAD   77 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTT-EEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCC-cEEEEee
Confidence            567887 67777777788999999998776533 22122  6777887 565 45555554 4566688774 2233333


Q ss_pred             ec--c-CCcCeEEEEEccCCCEEEEEeCC--------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE-
Q 010669          306 LK--D-HTAEVQAVTVHATNKYFVTASLD--------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-  373 (504)
Q Consensus       306 ~~--~-h~~~v~~l~~~p~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~-  373 (504)
                      ..  . .....+.+++.|+|++.++....        |.|..++.. ++.......      -...+.++|+|+++.|+ 
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~------~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG------LGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE------ESSEEEEEEETTSSEEEE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC------cccccceEECCcchheee
Confidence            31  1 34568899999999987776643        568888887 554433321      23578999999998765 


Q ss_pred             EEeCCCcEEEEEcCCCce-------eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCe
Q 010669          374 TGTSEALVKIWDVKSQAN-------VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPT  445 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~-------~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v  445 (504)
                      +-+..+.|..|++.....       ...+....+..-.+++..+|++.++....+ |.++|.. ++.+..+...  ...+
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--~~~~  227 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP--VPRP  227 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--SSSE
T ss_pred             cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--CCCE
Confidence            556778899999864321       112222223478899999998877766666 9999987 8888888876  3489


Q ss_pred             eEEEE-CCCCCEEEEEe
Q 010669          446 NSVDF-DHSGSYLAVAS  461 (504)
Q Consensus       446 ~~i~~-~~~g~~l~~~~  461 (504)
                      ++++| -++.+.|++.+
T Consensus       228 t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  228 TNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEESTTSSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEe
Confidence            99999 46767666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.10  E-value=1.8e-09  Score=100.18  Aligned_cols=215  Identities=13%  Similarity=0.168  Sum_probs=135.4

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCc----eEEEcccCccceeEEEEeeCCCEEEE---EeCCCcEEEEeCCCCC
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ----IVTTLSGHSKKVTSVKFVTEGDLFLT---GSADKTVRVWQGSEDG  298 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s---~s~dg~i~iwd~~~~~  298 (504)
                      ...+..+++++++|++..+....++++....    ++..+. -...-+++.|..+......   ++....+.+|....  
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence            3455677888899988888887777655432    222222 1223345555554444443   34455566666554  


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                        .+...+-+|-+.+.+++|+||+++|+++..|..|++-.......+..+.    -||...|..++.-++. .|++|+.|
T Consensus       142 --~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc----lGH~eFVS~isl~~~~-~LlS~sGD  214 (390)
T KOG3914|consen  142 --GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC----LGHKEFVSTISLTDNY-LLLSGSGD  214 (390)
T ss_pred             --cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc----cccHhheeeeeeccCc-eeeecCCC
Confidence              2333455899999999999999999999999999997766554444442    3788899999998754 48999999


Q ss_pred             CcEEEEEcCCCceeeeeeCCC--CCeE----------EEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCe
Q 010669          379 ALVKIWDVKSQANVAKFDGHV--GAVT----------AISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPT  445 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~--~~i~----------~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v  445 (504)
                      ++|++||+++++.+..+.-..  .+|.          .+.|......++..+++. |.++.....+....+...  ...+
T Consensus       215 ~tlr~Wd~~sgk~L~t~dl~s~~~~i~~lap~~f~~~~i~i~e~~~~~~~~~~~~p~~if~~~a~~~~~v~l~~--~~qv  292 (390)
T KOG3914|consen  215 KTLRLWDITSGKLLDTCDLSSLVIPILPLAPPKFIPTIIAIFESSRLVWLLCDGTPVVIFGAEALPTSLVPLVS--EVQV  292 (390)
T ss_pred             CcEEEEecccCCcccccchhHhhhhccccCchhhhhhHHHHHHhhhhhheecCCCeEEEEeecCCCceeEEEEe--cccc
Confidence            999999999999887664211  1111          122222223333334343 777776655443333222  3346


Q ss_pred             eEEEECC
Q 010669          446 NSVDFDH  452 (504)
Q Consensus       446 ~~i~~~~  452 (504)
                      +++++-.
T Consensus       293 ~d~a~~e  299 (390)
T KOG3914|consen  293 WDLALLE  299 (390)
T ss_pred             eeeeeee
Confidence            6776644

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.08  E-value=8.5e-10  Score=109.28  Aligned_cols=259  Identities=15%  Similarity=0.226  Sum_probs=172.3

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC-ceEEEcccCc--cceeEEEEeeCCC---EEEEEeCCCcEEEEeCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-QIVTTLSGHS--KKVTSVKFVTEGD---LFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~--~~v~~l~~s~~~~---~l~s~s~dg~i~iwd~~~  296 (504)
                      ..++.++.++|.|+-++.++.-| +.+.|+... ...+-+. |.  -.|-.+.|++...   ++++.+.- .-.+|++..
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~  100 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAK  100 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcc-hhhhhhhhc
Confidence            45788999999999999998887 556676543 3322222 32  3467788887433   45555544 456898876


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEE
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGT  374 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~  374 (504)
                      .........+.+|+..|+++.|+|.. ..+++++.|-.+..||+++.........    .....-+.++|+. +++.+| 
T Consensus       101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~----~w~s~asqVkwnyk~p~vla-  175 (1081)
T KOG0309|consen  101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS----SWRSAASQVKWNYKDPNVLA-  175 (1081)
T ss_pred             CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee----cccccCceeeecccCcchhh-
Confidence            54445556677999999999999865 5889999999999999998654433221    2234567899998 555554 


Q ss_pred             EeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669          375 GTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       375 g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      .+..+.|++||++.| .++..+++|...|+.+.|+.- -..+.+++.|+ |+.||..+........... +.+++.-.+-
T Consensus       176 sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~  254 (1081)
T KOG0309|consen  176 SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYL  254 (1081)
T ss_pred             hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCcceecccc
Confidence            456678999999876 578889999999999999763 23566777777 9999998765433222221 4667777777


Q ss_pred             CCCC--EEE-EEeCc-EEEEEeeccC------ccceeEEEccCCCCCCcee
Q 010669          452 HSGS--YLA-VASAD-IRVYQVASVK------ADWNCIKTFPDLSGTGAAS  492 (504)
Q Consensus       452 ~~g~--~l~-~~~~d-i~vw~~~~~~------~~~~~i~~~~~h~~~~~v~  492 (504)
                      |-|.  ++. ..|.+ +.+++.....      ...+.+.+|.||  .+.|.
T Consensus       255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH--~D~V~  303 (1081)
T KOG0309|consen  255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH--DDVVL  303 (1081)
T ss_pred             ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc--chHHH
Confidence            7543  222 11222 4444332211      234678899998  55543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=7e-09  Score=104.23  Aligned_cols=184  Identities=16%  Similarity=0.213  Sum_probs=135.0

Q ss_pred             ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE
Q 010669          265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC  344 (504)
Q Consensus       265 ~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~  344 (504)
                      ...+.|++++  +++|+-|..+|.|++++....    . .+...|+..      ..+|.++++||.||+|.|..+-+.+.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence            3557777774  678999999999999987652    2 333455443      55899999999999999999988877


Q ss_pred             EEEeecCCCCCCCCCeEEEEECCC-----CCEEEEEeCCCcEEEEEcCCC--ceeeeeeCCCCCeEEEEEcCCCcEEEEE
Q 010669          345 LTQVSDAGTDGRPEGYTSAAFHPD-----GLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSENGYYLATA  417 (504)
Q Consensus       345 ~~~~~~~~~~~~~~~v~~~~~~pd-----g~~l~~g~~dg~I~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~g~~l~s~  417 (504)
                      ...+.      ...++.+++++|+     .+.+++|+..| +.++.-+-.  +.-..+....|+|.++.|  .|.++|-+
T Consensus       106 ~~~~d------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWa  176 (846)
T KOG2066|consen  106 ITQYD------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWA  176 (846)
T ss_pred             ceeEe------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEe
Confidence            66654      2367999999997     56899999988 777653211  111134456789999999  78999999


Q ss_pred             eCCcEEEEEcCCCcceeeeecCCC----CCCeeEEEECCCCCEEEEEeCcEEEEEee
Q 010669          418 AHDGVKLWDLRKLKNFRSFESSDS----ETPTNSVDFDHSGSYLAVASADIRVYQVA  470 (504)
Q Consensus       418 ~~d~v~vwd~~~~~~~~~~~~~~~----~~~v~~i~~~~~g~~l~~~~~di~vw~~~  470 (504)
                      ++.||+|||+.+.+.+..+..+..    ......+.|.++.+.++.-+..|+|..+.
T Consensus       177 nd~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  177 NDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK  233 (846)
T ss_pred             cCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence            999999999998887766655421    22345688887765555444449999885

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.06  E-value=2.1e-07  Score=100.97  Aligned_cols=236  Identities=14%  Similarity=0.221  Sum_probs=158.1

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEE----cCCCC--ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLF----DRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vw----d~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ..+.|.++.|-++...++.+..+|.|.++    +..+.  +.+..+   ...|.+++||||+..|+....+|++.+.+-.
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~  150 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRD  150 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence            35679999999999999999999999999    54433  334443   4679999999999999999989988876411


Q ss_pred             C------------CCC-------------------cce--------------eEEeccCCcCeEEEEEccCCCEEEEEeC
Q 010669          296 E------------DGN-------------------YDC--------------KHTLKDHTAEVQAVTVHATNKYFVTASL  330 (504)
Q Consensus       296 ~------------~~~-------------------~~~--------------~~~~~~h~~~v~~l~~~p~~~~l~s~s~  330 (504)
                      -            .+.                   .+.              ...+. +.+.-..|+|-.||.+|++.+.
T Consensus       151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~  229 (928)
T PF04762_consen  151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSV  229 (928)
T ss_pred             ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEE
Confidence            0            000                   000              00111 3335567899999999999875


Q ss_pred             ---C---CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeeeee----C
Q 010669          331 ---D---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWDVKSQANVAKFD----G  397 (504)
Q Consensus       331 ---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~---dg~I~iwd~~~~~~~~~~~----~  397 (504)
                         .   ..+++|+-+ |.....-.     .-.+--.+++|-|.|+++|+...   ...|.+|. |+|-.-..|.    .
T Consensus       230 ~~~~~~~R~iRVy~Re-G~L~stSE-----~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~  302 (928)
T PF04762_consen  230 EPETGSRRVIRVYSRE-GELQSTSE-----PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDP  302 (928)
T ss_pred             EcCCCceeEEEEECCC-ceEEeccc-----cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCC
Confidence               3   479999976 54433332     11223457899999999998764   34566666 4554333332    3


Q ss_pred             CCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCccee--eeecCCCCCCeeEEEECCCC-CEEEEEeC-c-EEEEEe
Q 010669          398 HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR--SFESSDSETPTNSVDFDHSG-SYLAVASA-D-IRVYQV  469 (504)
Q Consensus       398 ~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~--~~~~~~~~~~v~~i~~~~~g-~~l~~~~~-d-i~vw~~  469 (504)
                      ....|..+.|++|+..|+....+.|.+|-..+..-..  .+.... ...+..+.|+|.. ..|.+.+. + +..+++
T Consensus       303 ~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  303 EEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            4568999999999999999888889999988765322  233222 2345559999954 33555554 3 544443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.06  E-value=6.7e-08  Score=106.69  Aligned_cols=202  Identities=14%  Similarity=0.164  Sum_probs=134.1

Q ss_pred             eEEEEeccCCCEEEEEe-CCCcEEEEcCCCCceEEEcccC-----------------ccceeEEEEee-CCCEEEEEeCC
Q 010669          226 IVSLDIHYSKDVIATGG-VDTNAVLFDRPSGQIVTTLSGH-----------------SKKVTSVKFVT-EGDLFLTGSAD  286 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~h-----------------~~~v~~l~~s~-~~~~l~s~s~d  286 (504)
                      -..++++++++.|+++. .++.|+++|..++. +.++.+-                 -...+.++|+| ++.++++.+.+
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            46788888887655544 45678989987654 3333210                 11246899999 56667777788


Q ss_pred             CcEEEEeCCCCCCcceeEEecc---------C------CcCeEEEEEccCCCEE-EEEeCCCeEEEEECCCCeEEEEeec
Q 010669          287 KTVRVWQGSEDGNYDCKHTLKD---------H------TAEVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSD  350 (504)
Q Consensus       287 g~i~iwd~~~~~~~~~~~~~~~---------h------~~~v~~l~~~p~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~  350 (504)
                      +.|++||..++.    +..+.+         +      -.....|+++|+++.| ++-+.++.|++||+.++........
T Consensus       705 ~~I~v~d~~~g~----v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg  780 (1057)
T PLN02919        705 HQIWEYNISDGV----TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG  780 (1057)
T ss_pred             CeEEEEECCCCe----EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            999999987631    111111         1      1235679999999854 4555678999999987653221100


Q ss_pred             C----------C-CC-----CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee-------------CCCCC
Q 010669          351 A----------G-TD-----GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-------------GHVGA  401 (504)
Q Consensus       351 ~----------~-~~-----~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~-------------~~~~~  401 (504)
                      .          + ..     ..-.....++++++|+++++-..++.|++||..++.......             +.-..
T Consensus       781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~  860 (1057)
T PLN02919        781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE  860 (1057)
T ss_pred             ccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence            0          0 00     011234689999999999999999999999998765443221             11125


Q ss_pred             eEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc
Q 010669          402 VTAISFSENGYYLATAAHDG-VKLWDLRKLKN  432 (504)
Q Consensus       402 i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~  432 (504)
                      ...|+++++|+++++-+.++ |++||+.+++.
T Consensus       861 P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        861 PAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            77899999999877777777 99999988764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.05  E-value=5.6e-07  Score=83.16  Aligned_cols=232  Identities=17%  Similarity=0.242  Sum_probs=163.6

Q ss_pred             EEEEecc-CCCEEEEEeCCCc-EEEEcCCCCceEEEcccCccce--eEEEEeeCCCEEEEEe-----CCCcEEEEeCCCC
Q 010669          227 VSLDIHY-SKDVIATGGVDTN-AVLFDRPSGQIVTTLSGHSKKV--TSVKFVTEGDLFLTGS-----ADKTVRVWQGSED  297 (504)
Q Consensus       227 ~~~~~s~-~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~s~s-----~dg~i~iwd~~~~  297 (504)
                      ..++.+| .+..++.+-.-|+ ..+||..+++....+....+.-  -.-.|++||++|++.-     ..|.|-|||... 
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-   86 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-   86 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-
Confidence            4678888 4567777777665 6789999998887765433322  2468999999999863     458999999983 


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEe------------------CCCeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS------------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEG  359 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  359 (504)
                       .+..+..+..|.-.-..+.+.|+|+.|+++-                  .+..+.+.|..+|+.+.+.... ...|...
T Consensus        87 -~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp-~~~~~lS  164 (305)
T PF07433_consen   87 -GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP-PDLHQLS  164 (305)
T ss_pred             -CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC-ccccccc
Confidence             3577778887777778899999998877762                  1335666778888877775532 1346678


Q ss_pred             eEEEEECCCCCEEEEEeCCCc-------EEEEEcCCCceeeeee-------CCCCCeEEEEEcCCCcEEEEEeCCc--EE
Q 010669          360 YTSAAFHPDGLILGTGTSEAL-------VKIWDVKSQANVAKFD-------GHVGAVTAISFSENGYYLATAAHDG--VK  423 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~~dg~-------I~iwd~~~~~~~~~~~-------~~~~~i~~l~~s~~g~~l~s~~~d~--v~  423 (504)
                      +..+++.++|..++..-..|.       |-+++.  +..+..+.       ...+.+-+|+++++|.++++.+-.+  +.
T Consensus       165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~  242 (305)
T PF07433_consen  165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA  242 (305)
T ss_pred             eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence            999999999987777654442       334432  33222222       2346899999999999888877764  99


Q ss_pred             EEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669          424 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQV  469 (504)
Q Consensus       424 vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~  469 (504)
                      +||..++..+......    .+..++-.+++ ++++.+.. .++.+
T Consensus       243 ~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG~G-~~~~~  282 (305)
T PF07433_consen  243 VWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSGQG-QLIRL  282 (305)
T ss_pred             EEECCCCCEeeccccC----ceeeeeecCCc-eEEeCCCc-cEEEc
Confidence            9999999988777654    46778777777 66655544 34444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.05  E-value=4.5e-09  Score=97.63  Aligned_cols=163  Identities=18%  Similarity=0.252  Sum_probs=110.5

Q ss_pred             eeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC-cceeEEeccCCcCeEEEEEccCCCEEEEEeC---CCeEEEEECCCCe
Q 010669          268 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASL---DNTWCFYDLSSGI  343 (504)
Q Consensus       268 v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~---dg~i~iwd~~~~~  343 (504)
                      ...+..++.+++++.+..+....+++...... .++..... -...-+++.|..+......+..   ...+.+|....+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            34445566777777777777766666655322 22222221 2223344455444454444444   4455555555444


Q ss_pred             EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee-eCCCCCeEEEEEcCCCcEEEEEeCCc-
Q 010669          344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDG-  421 (504)
Q Consensus       344 ~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~s~~~d~-  421 (504)
                      +...+      +|-+.++.++|+||+++++++..|..|+|-.....-.+..| -||...|..++.-++ +.|++|+.|+ 
T Consensus       144 ~~~~l------GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t  216 (390)
T KOG3914|consen  144 CEPIL------GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT  216 (390)
T ss_pred             cchhh------hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc
Confidence            33333      78889999999999999999999999999877666556555 479999999999855 5588888887 


Q ss_pred             EEEEEcCCCcceeeeec
Q 010669          422 VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       422 v~vwd~~~~~~~~~~~~  438 (504)
                      |++||+++++.+.++..
T Consensus       217 lr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  217 LRLWDITSGKLLDTCDL  233 (390)
T ss_pred             EEEEecccCCcccccch
Confidence            99999999998876654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=5e-07  Score=90.12  Aligned_cols=206  Identities=11%  Similarity=0.037  Sum_probs=124.9

Q ss_pred             CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCE-EEEEeC---CCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc
Q 010669          245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSA---DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA  320 (504)
Q Consensus       245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p  320 (504)
                      ..|.+-|..... .+.+... +.+..-.|+|||+. ++..+.   +..|.++|+.++.   . ..+....+......|+|
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~---~-~~lt~~~g~~~~~~~SP  242 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK---K-EKIASSQGMLVVSDVSK  242 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc---E-EEEecCCCcEEeeEECC
Confidence            345555554332 2333323 36788999999984 554443   3468888887642   2 22223445566788999


Q ss_pred             CCCEEEEE-eCC--CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeee
Q 010669          321 TNKYFVTA-SLD--NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAK  394 (504)
Q Consensus       321 ~~~~l~s~-s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg--~I~iwd~~~~~~~~~  394 (504)
                      ||+.++.. +.+  ..|.++|+.++.... +..     +........|+|||+.|+..+. .|  .|.++|+.+++....
T Consensus       243 DG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~-----~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl  316 (419)
T PRK04043        243 DGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITN-----YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV  316 (419)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCCCcEEE-ccc-----CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence            99876644 333  468888988876433 321     1112334579999987776653 33  688888877765332


Q ss_pred             eeCCCCCeEEEEEcCCCcEEEEEeCC---------c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-
Q 010669          395 FDGHVGAVTAISFSENGYYLATAAHD---------G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-  463 (504)
Q Consensus       395 ~~~~~~~i~~l~~s~~g~~l~s~~~d---------~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-  463 (504)
                      ...  +. ....|+|+|.+|+..+..         . |.+.|+.++.. ..+...   .......|+|||+.|+..+.. 
T Consensus       317 t~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~---~~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        317 VFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN---GVNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             ccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC---CCcCCeEECCCCCEEEEEEccC
Confidence            221  11 124899999988776532         3 78888877654 333322   123358899999988877654 


Q ss_pred             --EEEEEe
Q 010669          464 --IRVYQV  469 (504)
Q Consensus       464 --i~vw~~  469 (504)
                        -.+|-+
T Consensus       390 ~~~~L~~~  397 (419)
T PRK04043        390 NQSALGII  397 (419)
T ss_pred             CcEEEEEE
Confidence              344444

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.98  E-value=8.5e-09  Score=92.49  Aligned_cols=217  Identities=18%  Similarity=0.318  Sum_probs=144.0

Q ss_pred             ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC--CcceeEEeccCC------------cCeEEEEEccCC--CEEEEE
Q 010669          265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--NYDCKHTLKDHT------------AEVQAVTVHATN--KYFVTA  328 (504)
Q Consensus       265 ~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~~p~~--~~l~s~  328 (504)
                      ...|+++.|...|.+|++|...|.|.+|.-....  .++....+++|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4569999999999999999999999999754421  122333455554            347788887544  478888


Q ss_pred             eCCCeEEEEECCCCeEEEE----------------------e--------------ec--CCCCCCCCCeEEEEECCCCC
Q 010669          329 SLDNTWCFYDLSSGICLTQ----------------------V--------------SD--AGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       329 s~dg~i~iwd~~~~~~~~~----------------------~--------------~~--~~~~~~~~~v~~~~~~pdg~  370 (504)
                      +.|.+|++|.+........                      +              ..  .....|...+.++.|+.|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            8999999998854311000                      0              00  01135666788999999988


Q ss_pred             EEEEEeCCCcEEEEEcCCCc---eeeeeeCCC-----CCeEEEEEcCC--CcEEEEEeCCcEEEEEcCCCcc------ee
Q 010669          371 ILGTGTSEALVKIWDVKSQA---NVAKFDGHV-----GAVTAISFSEN--GYYLATAAHDGVKLWDLRKLKN------FR  434 (504)
Q Consensus       371 ~l~~g~~dg~I~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~--g~~l~s~~~d~v~vwd~~~~~~------~~  434 (504)
                      .++++ .|=.|.+|++.-..   .+..+++|.     .-|++..|+|.  ..++.+.+.+.|++-|+|....      +.
T Consensus       186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            88775 56789999986433   233445554     36889999994  3344444444499999984321      11


Q ss_pred             --eeecCC------CCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCC
Q 010669          435 --SFESSD------SETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       435 --~~~~~~------~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                        .+....      ....|..+.|+++|+|+++-+.- ++|||++.   ...++++++-|
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm---~k~pikTi~~h  321 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNM---AKNPIKTIPMH  321 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccc---ccCCceeechH
Confidence              111111      13467889999999999998887 99999954   34566666554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.97  E-value=2.6e-06  Score=79.20  Aligned_cols=211  Identities=14%  Similarity=0.102  Sum_probs=134.0

Q ss_pred             EEEEee-CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEc-cCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 010669          270 SVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH-ATNKYFVTASLDNTWCFYDLSSGICLTQ  347 (504)
Q Consensus       270 ~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~l~s~s~dg~i~iwd~~~~~~~~~  347 (504)
                      +..|.+ ++.++++--..+.|..|+..++    ....+... . ...+.+. ++ ..++.+..++ +.++|..+++....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----~~~~~~~~-~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----EVEVIDLP-G-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT----EEEEEESS-S-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC----eEEEEecC-C-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEE
Confidence            567887 6777777778899999998774    22222222 2 7778887 55 5555555544 55569999866554


Q ss_pred             eecCCCCCCCCCeEEEEECCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeC
Q 010669          348 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH  419 (504)
Q Consensus       348 ~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d--------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~  419 (504)
                      .............+.+++.|+|++.++....        |.|..++.. ++...... .-...+.|+|+|+++.|+.+..
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence            4431111144678899999999987776543        567777776 44333333 3456889999999998876655


Q ss_pred             C-c-EEEEEcCCCcc----eeee-ecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCc
Q 010669          420 D-G-VKLWDLRKLKN----FRSF-ESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGA  490 (504)
Q Consensus       420 d-~-v~vwd~~~~~~----~~~~-~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~  490 (504)
                      . + |..|++.....    ...+ .........-.++++.+|++.++....  |.+++     ..++.+..+..-  ...
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~-----p~G~~~~~i~~p--~~~  226 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD-----PDGKLLREIELP--VPR  226 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE-----TTSCEEEEEE-S--SSS
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC-----CCccEEEEEcCC--CCC
Confidence            4 4 88888863222    1222 222212347889999999877765444  66666     347777777653  458


Q ss_pred             eeEEEEe
Q 010669          491 ASFLFLF  497 (504)
Q Consensus       491 v~~l~~~  497 (504)
                      +++++|-
T Consensus       227 ~t~~~fg  233 (246)
T PF08450_consen  227 PTNCAFG  233 (246)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8999994

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=4.9e-10  Score=112.95  Aligned_cols=216  Identities=17%  Similarity=0.260  Sum_probs=160.4

Q ss_pred             ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC--e
Q 010669          256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN--T  333 (504)
Q Consensus       256 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg--~  333 (504)
                      +..+++..|+...+|++|+.+.+.|+.|+..|.|++|++.++   .......+|.+.|+-+.-+.+|..+++.+.-.  .
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG---~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG---SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc---cccccccccccccccccccCCcceeeeeccccCch
Confidence            445677788999999999999999999999999999999987   55566789999999999999998777765433  4


Q ss_pred             EEEEECCC-CeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee-eC---CCCCeEEEEEc
Q 010669          334 WCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-DG---HVGAVTAISFS  408 (504)
Q Consensus       334 i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~-~~---~~~~i~~l~~s  408 (504)
                      ..+|++.+ +.....+         ..-.++.|+.....-+.|+......+||+.++.++.++ .+   ....-++..|+
T Consensus      1169 saLW~~~s~~~~~Hsf---------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF---------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred             HHHhccccccCccccc---------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence            67899864 2223333         24568889887666667777778999999999877663 22   22234788999


Q ss_pred             CCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccceeEEEccCCCCC
Q 010669          409 ENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGT  488 (504)
Q Consensus       409 ~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~  488 (504)
                      |+..+++-   ||| +||+|....++.|...  . .-..-.|+|+|.-++..+   .|||+    ++++.+++.+..   
T Consensus      1240 P~D~LIln---dGv-LWDvR~~~aIh~FD~f--t-~~~~G~FHP~g~eVIINS---EIwD~----RTF~lLh~VP~L--- 1302 (1516)
T KOG1832|consen 1240 PCDTLILN---DGV-LWDVRIPEAIHRFDQF--T-DYGGGGFHPSGNEVIINS---EIWDM----RTFKLLHSVPSL--- 1302 (1516)
T ss_pred             CCcceEee---Cce-eeeeccHHHHhhhhhh--e-ecccccccCCCceEEeec---hhhhh----HHHHHHhcCccc---
Confidence            99887763   444 7999998777777543  1 222346999999998877   68998    778888777664   


Q ss_pred             CceeEEEEeecCc
Q 010669          489 GAASFLFLFVLGQ  501 (504)
Q Consensus       489 ~~v~~l~~~~~g~  501 (504)
                       .-..+.|...|-
T Consensus      1303 -dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1303 -DQCAVTFNSTGD 1314 (1516)
T ss_pred             -cceEEEeccCcc
Confidence             235556665554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.96  E-value=5.6e-07  Score=89.44  Aligned_cols=234  Identities=16%  Similarity=0.144  Sum_probs=140.9

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCe
Q 010669          234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV  313 (504)
Q Consensus       234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  313 (504)
                      ++..+++++.+|.++.+|..+|+.+...... +.+.+.... .+..++.++.+|.+..||..++   +.+-.+......+
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG---~~~W~~~~~~~~~  178 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATG---ERLWTYSRVTPAL  178 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCC---ceeeEEccCCCce
Confidence            4667788888999999999999887765532 222221111 3456777888999999999876   3333222211111


Q ss_pred             -----EEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCC--CCeEEEEECC--CCCEEEEEeCCCcEEEE
Q 010669          314 -----QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAAFHP--DGLILGTGTSEALVKIW  384 (504)
Q Consensus       314 -----~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p--dg~~l~~g~~dg~I~iw  384 (504)
                           .+...  .+..++.++.+|.+..+|.++|+...........+..  .....+.-+|  .+..+++++.+|.++.|
T Consensus       179 ~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~  256 (377)
T TIGR03300       179 TLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL  256 (377)
T ss_pred             eecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence                 01111  1346788888999999999999876544311010000  0000111112  34577778889999999


Q ss_pred             EcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       385 d~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      |..+++.+..... . .......  .+..++.++.++ |..+|..+++.+....... .....+...  .+..|++++.+
T Consensus       257 d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~  329 (377)
T TIGR03300       257 DLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV--VGGYLVVGDFE  329 (377)
T ss_pred             ECCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE--ECCEEEEEeCC
Confidence            9999987765542 1 1222222  456677777777 9999999988765542211 111222222  46688888777


Q ss_pred             --EEEEEeeccCccceeEEEccCC
Q 010669          464 --IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       464 --i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                        +.+++.    .+++.+.+++.+
T Consensus       330 G~l~~~d~----~tG~~~~~~~~~  349 (377)
T TIGR03300       330 GYLHWLSR----EDGSFVARLKTD  349 (377)
T ss_pred             CEEEEEEC----CCCCEEEEEEcC
Confidence              777775    567777777654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.96  E-value=1.3e-08  Score=89.31  Aligned_cols=196  Identities=16%  Similarity=0.272  Sum_probs=118.3

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCce------------EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI------------VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~------------~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd  293 (504)
                      |+.+.++. ...|+++..++.+..+....+.+            ...+..|.++-.+-..+-.++-+++++.||.+.+++
T Consensus        39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            55555553 34566666666666555433322            222222333222222233456799999999999998


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-----CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-----DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-  367 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-  367 (504)
                      .+..  +...+.+..-...-.+.++...++.+.++.-     -+..+.|+++..+....-.   . . ...|++++-|| 
T Consensus       118 ~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~---~-~-~~~v~~l~~hp~  190 (319)
T KOG4714|consen  118 TDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK---K-A-LDAVTALCSHPA  190 (319)
T ss_pred             chHH--HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc---c-c-cccchhhhCCcc
Confidence            7642  1222222211111122223334555544321     2345566665433222111   1 1 13499999999 


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCc-eeeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCC
Q 010669          368 DGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRK  429 (504)
Q Consensus       368 dg~~l~~g~~dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~  429 (504)
                      ..+++++|+.||.+-+||.|+.. +...++.|..+|..+-|+| ++..|+++++|| +..||-.+
T Consensus       191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            66788899999999999999874 4455678999999999999 688999999999 99999763

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.95  E-value=1.4e-07  Score=93.58  Aligned_cols=245  Identities=12%  Similarity=0.154  Sum_probs=169.4

Q ss_pred             eccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEc--ccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669          216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL--SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       216 ~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd  293 (504)
                      .+-..+|...|.-+.|+.+...|-+...+|.|.||-+-.|.-....  ....+.|.+++|..+|..++..-.||.|.|=.
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            3446789999999999999999999999999999998777543322  23456789999999999999999999998877


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe-------EEEEeecCCCCCCCCCeEEEEEC
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-------CLTQVSDAGTDGRPEGYTSAAFH  366 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~  366 (504)
                      ++....+.  ..+++  .....+.|++|.+.++.+-..|.+++||.+..-       +....... .......+..+.|.
T Consensus       144 vdGNRIwg--KeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~-~s~~~~kia~i~w~  218 (1189)
T KOG2041|consen  144 VDGNRIWG--KELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI-FSNFPTKIAEIEWN  218 (1189)
T ss_pred             eccceecc--hhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeee-ecCCCccccceeec
Confidence            76532111  11221  224478899999999988899999999976431       11111110 11122335555553


Q ss_pred             --------CCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---------c-EEEEEcC
Q 010669          367 --------PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---------G-VKLWDLR  428 (504)
Q Consensus       367 --------pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---------~-v~vwd~~  428 (504)
                              ||-..|+++..+|.+.|..-.+......+. ....+..+.|+++|..|+.++.+         + |.+|. .
T Consensus       219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p  296 (1189)
T KOG2041|consen  219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-P  296 (1189)
T ss_pred             cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-c
Confidence                    477889999999998886544433222333 22578899999999999998754         2 44444 3


Q ss_pred             CCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       429 ~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                      -|+.+.+++.+  ...|++++|-..|-.++.+-.. |.+=++
T Consensus       297 ~G~i~gtlkvp--g~~It~lsWEg~gLriA~AvdsfiyfanI  336 (1189)
T KOG2041|consen  297 YGHIVGTLKVP--GSCITGLSWEGTGLRIAIAVDSFIYFANI  336 (1189)
T ss_pred             chhheEEEecC--CceeeeeEEcCCceEEEEEecceEEEEee
Confidence            46777777776  5789999998877776666555 444333

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=2.5e-08  Score=100.41  Aligned_cols=186  Identities=17%  Similarity=0.211  Sum_probs=132.4

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      ...++|++++  +++++-|+.+|.|++++.. +.. .+...|...      ..+|.++++|+.||+|.|-.+-++   ..
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~---~~  105 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD---DE  105 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCC---cc
Confidence            3457788877  7899999999999999875 333 333345443      558999999999999999988775   33


Q ss_pred             eEEeccCCcCeEEEEEccC-----CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          303 KHTLKDHTAEVQAVTVHAT-----NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p~-----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                      ..++ ....++.+++++|+     .+.+++|+.-| +.++.-+-........   .....++|.++.|.  |+++|-++.
T Consensus       106 ~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~---l~~~eG~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  106 ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV---LSEGEGPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee---eecCccceEEEEec--CcEEEEecC
Confidence            3333 23578999999997     56899999988 7776533211111111   12345789999997  678888877


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCC------CeEEEEEcCCCcEEEEEeCCcEEEEEcCCC
Q 010669          378 EALVKIWDVKSQANVAKFDGHVG------AVTAISFSENGYYLATAAHDGVKLWDLRKL  430 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~------~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~  430 (504)
                      +| |+|||+..++.+..+.....      ....+.|.++ ..|+.|-.+.|+|..++++
T Consensus       179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~~~  235 (846)
T KOG2066|consen  179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIKKR  235 (846)
T ss_pred             CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEecc
Confidence            77 99999999888777654333      2345777754 4677788888999988843

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=1.4e-07  Score=94.43  Aligned_cols=233  Identities=14%  Similarity=0.078  Sum_probs=167.1

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCC------------CEEEEEeCCCcEEEE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG------------DLFLTGSADKTVRVW  292 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~------------~~l~s~s~dg~i~iw  292 (504)
                      .-.+++|+|.| ++|.|+. ..|.|-|..+-+.+..+..|...|+.+.|.|-.            -+|+++.-.|.|.+|
T Consensus        17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            35688999866 6666664 478899999999999999999999999998621            147778888999999


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEcc---CC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHA---TN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-  367 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p---~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-  367 (504)
                      |....   ..+..+..|.+++..++|-+   +. ..++.-....++.+|+..+|+......     .......|+.+.| 
T Consensus        95 d~~~~---s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-----ys~~iLs~f~~DPf  166 (1062)
T KOG1912|consen   95 DFVLA---SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-----YSHEILSCFRVDPF  166 (1062)
T ss_pred             Eehhh---hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-----cCCcceeeeeeCCC
Confidence            99875   45556778889999999976   33 466666777899999999998877664     2235678899999 


Q ss_pred             CCCEEEEEeCCCcEEEEEcCC-------CceeeeeeCCCC------------C-------------eEEEEEcCCC-cEE
Q 010669          368 DGLILGTGTSEALVKIWDVKS-------QANVAKFDGHVG------------A-------------VTAISFSENG-YYL  414 (504)
Q Consensus       368 dg~~l~~g~~dg~I~iwd~~~-------~~~~~~~~~~~~------------~-------------i~~l~~s~~g-~~l  414 (504)
                      |.+.+..-+..|.+.+-+.-.       ++..+.-..|..            .             .-.++|+|.- +.+
T Consensus       167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l  246 (1062)
T KOG1912|consen  167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL  246 (1062)
T ss_pred             CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence            778888878888887776522       122221112211            0             1124677753 344


Q ss_pred             EEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCC--CEEEEEeCc--EEEEEe
Q 010669          415 ATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG--SYLAVASAD--IRVYQV  469 (504)
Q Consensus       415 ~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g--~~l~~~~~d--i~vw~~  469 (504)
                      +..-..++.++|+.-..++..+...  .+.+.-+.|-|++  ..|++...|  +.+|--
T Consensus       247 fi~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  247 FITFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             EEEeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence            4444556999999988888888776  3455556666654  578888877  888864

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.93  E-value=6.6e-07  Score=82.69  Aligned_cols=220  Identities=16%  Similarity=0.124  Sum_probs=134.6

Q ss_pred             CCCcEEEEcCCCCceEEEcccCccceeEEE--EeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc
Q 010669          243 VDTNAVLFDRPSGQIVTTLSGHSKKVTSVK--FVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA  320 (504)
Q Consensus       243 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~--~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p  320 (504)
                      .+|+|..||..+|+.+....--. .+....  ..+++..+++++.++.|..||..++   +.+..+.. .+.+.... ..
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG---~~~W~~~~-~~~~~~~~-~~   74 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTG---KVLWRFDL-PGPISGAP-VV   74 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTS---EEEEEEEC-SSCGGSGE-EE
T ss_pred             CCCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCC---CEEEEeec-ccccccee-ee
Confidence            36899999999999888775311 122222  2335667888899999999999876   34433332 11111111 22


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC
Q 010669          321 TNKYFVTASLDNTWCFYDLSSGICLTQV-SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV  399 (504)
Q Consensus       321 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~  399 (504)
                      .+..+++++.++.+..+|..+|+..... ..... ... .........++..++++..+|.|..+|+++|+.+.......
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP-PAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC-TCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             cccccccccceeeeEecccCCcceeeeecccccc-ccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence            4667777778889999999999998874 32111 111 12222333347788888889999999999999987776533


Q ss_pred             CC----------eEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEE
Q 010669          400 GA----------VTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRV  466 (504)
Q Consensus       400 ~~----------i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~v  466 (504)
                      ..          +..-....++ .++.++.++ +..+|+.+++.+.... .   ..+.. ....++..|++++.+  +..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~---~~~~~-~~~~~~~~l~~~~~~~~l~~  226 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I---SGIYS-LPSVDGGTLYVTSSDGRLYA  226 (238)
T ss_dssp             T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S---S-ECE-CEECCCTEEEEEETTTEEEE
T ss_pred             CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C---CCccC-CceeeCCEEEEEeCCCEEEE
Confidence            22          1222222345 666666665 4444999998553222 1   12332 145678888888755  888


Q ss_pred             EEeeccCccc
Q 010669          467 YQVASVKADW  476 (504)
Q Consensus       467 w~~~~~~~~~  476 (504)
                      ||..+++..|
T Consensus       227 ~d~~tG~~~W  236 (238)
T PF13360_consen  227 LDLKTGKVVW  236 (238)
T ss_dssp             EETTTTEEEE
T ss_pred             EECCCCCEEe
Confidence            9984443333

...

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.92  E-value=3.5e-07  Score=86.84  Aligned_cols=172  Identities=16%  Similarity=0.167  Sum_probs=132.3

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC-cEEEEeCCCCCCcceeEEeccCCcC
Q 010669          234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK-TVRVWQGSEDGNYDCKHTLKDHTAE  312 (504)
Q Consensus       234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~h~~~  312 (504)
                      +|++++..| -|...+.+...+-.+.  -+|.+.|.-..+..+++-++.|..|| .+-|||..++    ....+...-+.
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~----e~kr~e~~lg~  403 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG----EVKRIEKDLGN  403 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc----eEEEeeCCccc
Confidence            578888877 4678887765554433  25677788888888888899999999 8999999874    44555666788


Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC----cEEEEEcCC
Q 010669          313 VQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA----LVKIWDVKS  388 (504)
Q Consensus       313 v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg----~I~iwd~~~  388 (504)
                      |.++..+++|++++.+.....+.+.|+++++....-.     ....-|+.+.|||+++++|-+-.+|    .|++||+..
T Consensus       404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-----S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-----SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-----cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            9999999999999999999999999999997654332     3346799999999999999987766    689999988


Q ss_pred             CceeeeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669          389 QANVAKFDGHVGAVTAISFSENGYYLATAA  418 (504)
Q Consensus       389 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~  418 (504)
                      ++...... ..+.=.+-+|.|+|++|.--+
T Consensus       479 ~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         479 GKIYDVTT-PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence            77544332 233334567888998876554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.92  E-value=4.4e-09  Score=95.66  Aligned_cols=161  Identities=16%  Similarity=0.238  Sum_probs=123.3

Q ss_pred             EEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC-----eEEEEeecCCCCC
Q 010669          281 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG-----ICLTQVSDAGTDG  355 (504)
Q Consensus       281 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~~  355 (504)
                      ++.+.+-.|-+-|+.++    ....|. ..+.|.++.|+..+++++.|+.+|.|..+|++.+     .+...+      -
T Consensus       228 fs~G~sqqv~L~nvetg----~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl------y  296 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETG----HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL------Y  296 (425)
T ss_pred             ecccccceeEEEEeecc----cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE------E
Confidence            55666777888888874    233343 5677999999999999999999999999999865     233333      4


Q ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCce---eeeeeCCCCCeEEE--EEcCCCcEEEEEeCCc-EEEEEcC
Q 010669          356 RPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQAN---VAKFDGHVGAVTAI--SFSENGYYLATAAHDG-VKLWDLR  428 (504)
Q Consensus       356 ~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~---~~~~~~~~~~i~~l--~~s~~g~~l~s~~~d~-v~vwd~~  428 (504)
                      |.+.|+++..-. ++.+|++.+.+|.|.+||+|.-++   +..+.||...-..+  -..+....++++++|. .+||.++
T Consensus       297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            667899998888 889999999999999999987766   88999986544333  3345566788888888 9999999


Q ss_pred             CCcceeeeecCCC--CCCeeEEEECC
Q 010669          429 KLKNFRSFESSDS--ETPTNSVDFDH  452 (504)
Q Consensus       429 ~~~~~~~~~~~~~--~~~v~~i~~~~  452 (504)
                      .+..+.+++....  ...+.+++|+.
T Consensus       377 ~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  377 SGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             cCceeeccCCCCccccccccceehhc
Confidence            9999888876532  23456666653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=5.9e-09  Score=94.86  Aligned_cols=147  Identities=14%  Similarity=0.198  Sum_probs=118.2

Q ss_pred             EEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-----ceeeeeeCCCC
Q 010669          326 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-----ANVAKFDGHVG  400 (504)
Q Consensus       326 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~-----~~~~~~~~~~~  400 (504)
                      ++.+.+..+-+-|+++|....-       ...+.|.++.|+..+++++.|+.+|.|..+|+|.+     .+...+. |.+
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf-------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~S  299 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSF-------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDS  299 (425)
T ss_pred             ecccccceeEEEEeeccccccc-------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCc
Confidence            5666777889999998753322       23457889999999999999999999999999865     3455555 888


Q ss_pred             CeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCcc---eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccC
Q 010669          401 AVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKN---FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK  473 (504)
Q Consensus       401 ~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~---~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~  473 (504)
                      .|+++..-. ++.+|.+.+.+| |++||+|..++   +..+.+|.....-.-+..++...+++++|.|  .+||.+    
T Consensus       300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl----  375 (425)
T KOG2695|consen  300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL----  375 (425)
T ss_pred             chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEec----
Confidence            999987766 778888888888 99999998777   8888888665556667778888899999999  999999    


Q ss_pred             ccceeEEEccC
Q 010669          474 ADWNCIKTFPD  484 (504)
Q Consensus       474 ~~~~~i~~~~~  484 (504)
                      +.+..+.+++-
T Consensus       376 ~~ghLl~tipf  386 (425)
T KOG2695|consen  376 DSGHLLCTIPF  386 (425)
T ss_pred             ccCceeeccCC
Confidence            77888877754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.90  E-value=1.7e-06  Score=77.71  Aligned_cols=202  Identities=15%  Similarity=0.229  Sum_probs=122.7

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc-------CccceeEEEEeeCC------CEEEEEeCCCc
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-------HSKKVTSVKFVTEG------DLFLTGSADKT  288 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-------h~~~v~~l~~s~~~------~~l~s~s~dg~  288 (504)
                      ..+.=.-++||||+.+||.+...|+|++||+... .+..+..       -..+|..+.|.+..      ..|++-..+|.
T Consensus        42 ~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~  120 (282)
T PF15492_consen   42 PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ  120 (282)
T ss_pred             CCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence            3444567999999999999999999999998753 3333332       23567777776421      24777788898


Q ss_pred             EEEEeCCC--CCCcceeEEec---cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEE
Q 010669          289 VRVWQGSE--DGNYDCKHTLK---DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA  363 (504)
Q Consensus       289 i~iwd~~~--~~~~~~~~~~~---~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  363 (504)
                      ++-|-+..  .+.++..+.+.   .+...|.++.++|..+.|++|+....      +.+.  ..       .....+++-
T Consensus       121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--s~-------a~~~GLtaW  185 (282)
T PF15492_consen  121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--SK-------ASSCGLTAW  185 (282)
T ss_pred             eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--cc-------ccccCceEE
Confidence            88887632  34455555544   24668999999999898888765322      0000  00       001122222


Q ss_pred             EECCCCCE--EEEEeCCCc------EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCccee
Q 010669          364 AFHPDGLI--LGTGTSEAL------VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR  434 (504)
Q Consensus       364 ~~~pdg~~--l~~g~~dg~------I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~  434 (504)
                      ..-.+..+  .++...|+.      -.+|.+-+.+...........|..|..||||..|++...+| |.+|++...+...
T Consensus       186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~  265 (282)
T PF15492_consen  186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR  265 (282)
T ss_pred             EEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence            21111110  011111111      12333222211111122456899999999999999999999 9999999988877


Q ss_pred             eeecC
Q 010669          435 SFESS  439 (504)
Q Consensus       435 ~~~~~  439 (504)
                      .+...
T Consensus       266 ~W~~~  270 (282)
T PF15492_consen  266 SWKQD  270 (282)
T ss_pred             ccchh
Confidence            77654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.87  E-value=5.6e-08  Score=99.02  Aligned_cols=181  Identities=21%  Similarity=0.308  Sum_probs=138.9

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCe
Q 010669          234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV  313 (504)
Q Consensus       234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  313 (504)
                      ++..++.|+-...+..+|+.+.+..+...-..+.|+-+..  +++++++|...|+|.+-|..+.   +.++++..|++.|
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~---~~iht~~aHs~si  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF---ETIHTFDAHSGSI  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC---ceeeeeeccccce
Confidence            4556777887888889999988877776655545666654  7889999999999999998775   8899999999999


Q ss_pred             EEEEEccCCCEEEEEeC---------CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEE
Q 010669          314 QAVTVHATNKYFVTASL---------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKI  383 (504)
Q Consensus       314 ~~l~~~p~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~i  383 (504)
                      .++..  .|+.|++||.         |..|++||++..+.+.-+..      .....-+.|+| -...+++.+..|...+
T Consensus       221 SDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~------~~~P~flrf~Psl~t~~~V~S~sGq~q~  292 (1118)
T KOG1275|consen  221 SDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF------PYGPQFLRFHPSLTTRLAVTSQSGQFQF  292 (1118)
T ss_pred             eeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc------ccCchhhhhcccccceEEEEecccceee
Confidence            88876  4899999975         55689999998766554431      12235678888 3457888889999999


Q ss_pred             EEc---CCCc-eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEc
Q 010669          384 WDV---KSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL  427 (504)
Q Consensus       384 wd~---~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~  427 (504)
                      -|.   .+.. .+..+......+..+.++++|..|+.|..+| |.+|--
T Consensus       293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            993   3331 2333333445699999999999999999999 999973

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=6.2e-07  Score=91.19  Aligned_cols=207  Identities=15%  Similarity=0.222  Sum_probs=141.6

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee-CCCEEEEEeCCCc-----EEEEeCCCC-
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKT-----VRVWQGSED-  297 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~-----i~iwd~~~~-  297 (504)
                      .|+|  |++.+..++.|+.+|.|.+++.. -+.+..++.+...|...-|.- +.++|++.+.|+.     ++||+++.. 
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            4444  56788899999999999888742 455577887777733333443 4467888776654     899998753 


Q ss_pred             -CC-ccee--EEecc-----CCcCeEEEEEccCCCEEEEEeCCCeEEEEECC--CCeEEEEeecCCCCCCCCCeEEEEEC
Q 010669          298 -GN-YDCK--HTLKD-----HTAEVQAVTVHATNKYFVTASLDNTWCFYDLS--SGICLTQVSDAGTDGRPEGYTSAAFH  366 (504)
Q Consensus       298 -~~-~~~~--~~~~~-----h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~  366 (504)
                       ++ ..+.  +.+..     ...++.+++.|.+-+.+++|-.+|.|..+.-+  ..+..+...   ......+|+.+++.
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~---~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY---SHRGKEPITGLALR  180 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee---eccCCCCceeeEEe
Confidence             12 3444  12222     34678999999999999999999999988422  111111111   11335789999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCce-eeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeee
Q 010669          367 PDGLILGTGTSEALVKIWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFE  437 (504)
Q Consensus       367 pdg~~l~~g~~dg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~  437 (504)
                      .++..++.......|.+|.+....+ ...+..|...++|.+|++....+++++...+.+||....+.-..+.
T Consensus       181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence            9998733333445799999974443 4447778889999999987666777777779999988655555555

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.86  E-value=9.5e-09  Score=102.04  Aligned_cols=205  Identities=20%  Similarity=0.254  Sum_probs=144.5

Q ss_pred             cccCCCCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCCC-ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          218 LHKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      +..+|...|+.+.|+|.. ..+++++.|-.+..||+.+. ..+..+..-...-..++|+-....+++.+..+.|++||.+
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r  188 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR  188 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence            457899999999999975 58999999999999998765 3344444444557889998744445555667789999999


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC--CCEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--GLIL  372 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd--g~~l  372 (504)
                      .++  .+...+++|...|+.+.|+. ....+.+++.||+|++||.+....-....    .....++.--.+.|-  |.++
T Consensus       189 ~gs--~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~----vtt~~piw~~r~~Pfg~g~~~  262 (1081)
T KOG0309|consen  189 KGS--TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT----VTTNFPIWRGRYLPFGEGYCI  262 (1081)
T ss_pred             CCC--cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee----ccccCcceeccccccCceeEe
Confidence            876  66778888999999999875 33578899999999999987643222211    122356666677773  3333


Q ss_pred             EEEeCCCcEEEEE---------cCC-CceeeeeeCCCCCeEEEEEcCC----------CcEEEEEeCCc-EEEEEcC
Q 010669          373 GTGTSEALVKIWD---------VKS-QANVAKFDGHVGAVTAISFSEN----------GYYLATAAHDG-VKLWDLR  428 (504)
Q Consensus       373 ~~g~~dg~I~iwd---------~~~-~~~~~~~~~~~~~i~~l~~s~~----------g~~l~s~~~d~-v~vwd~~  428 (504)
                      .-.-.+..+.+++         ..+ .++++.|.||...|....|-..          ...|++-+.|. +++|-+.
T Consensus       263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence            2222222444443         332 3678999999988877666432          34689999997 9999765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=3.7e-07  Score=92.75  Aligned_cols=193  Identities=16%  Similarity=0.181  Sum_probs=129.1

Q ss_pred             EEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcC-eEEEEEccCCCEEEEEeCCC-----eEEEEECCCC---
Q 010669          272 KFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE-VQAVTVHATNKYFVTASLDN-----TWCFYDLSSG---  342 (504)
Q Consensus       272 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~l~s~s~dg-----~i~iwd~~~~---  342 (504)
                      +|++.+..++.|+.+|.|.+++-.-    +..+.++.+... |..+....+.++|++.+.|+     .+++||++.-   
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~----~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF----QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc----eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            3577888999999999998886433    555667777666 44443333346888877765     4899998642   


Q ss_pred             ---eEEEEee--cCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEc---CC-CceeeeeeCCCCCeEEEEEcCCCcE
Q 010669          343 ---ICLTQVS--DAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDV---KS-QANVAKFDGHVGAVTAISFSENGYY  413 (504)
Q Consensus       343 ---~~~~~~~--~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~---~~-~~~~~~~~~~~~~i~~l~~s~~g~~  413 (504)
                         .++....  .........++.+++.|.+-+.+++|-.+|.|..+.=   |. +....-......+|+.+.|..++..
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS  185 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence               2331111  1112234678999999999999999999999998842   11 1111112224569999999998877


Q ss_pred             -EEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          414 -LATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       414 -l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                       +++++...|.+|.+.. +....-....++..+.|..|++...-+++++.. +.+|+.
T Consensus       186 ~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~s  242 (933)
T KOG2114|consen  186 VLFVATTEQVMLYSLSG-RTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDS  242 (933)
T ss_pred             eEEEEecceeEEEEecC-CCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcC
Confidence             6666666799999984 432222122336788899998866645555555 999997

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.84  E-value=4.4e-06  Score=75.07  Aligned_cols=233  Identities=15%  Similarity=0.192  Sum_probs=132.9

Q ss_pred             EEeccCCCEEEEEeCCCcEEEEcCCCC--ceEEEcc---cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669          229 LDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLS---GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       229 ~~~s~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~---~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  303 (504)
                      ++.+.+|++||.-- |..|.|=..++.  ..+.+.+   ...-.-..++||||+.+|+.+...|+|++||+...    .+
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~----~l   77 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS----EL   77 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc----ee
Confidence            56678899888764 566766554332  2223322   22233578999999999999999999999998753    22


Q ss_pred             EEec-------cCCcCeEEEEEccC------CCEEEEEeCCCeEEEEECCC-----CeEEEEeecCCCCCCCCCeEEEEE
Q 010669          304 HTLK-------DHTAEVQAVTVHAT------NKYFVTASLDNTWCFYDLSS-----GICLTQVSDAGTDGRPEGYTSAAF  365 (504)
Q Consensus       304 ~~~~-------~h~~~v~~l~~~p~------~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~~  365 (504)
                      ..+.       .-...|.++.|.+.      ...|++-..+|.++-|-+..     .+....+..  ...+...|.++.+
T Consensus        78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf--~~~yp~Gi~~~vy  155 (282)
T PF15492_consen   78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSF--SSHYPHGINSAVY  155 (282)
T ss_pred             EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEe--cccCCCceeEEEE
Confidence            2222       12356777777542      22567777888877766532     222223321  2244678999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCC-cE-EEEEeCCcE-------EEEEcCCCcceeee
Q 010669          366 HPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YY-LATAAHDGV-------KLWDLRKLKNFRSF  436 (504)
Q Consensus       366 ~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g-~~-l~s~~~d~v-------~vwd~~~~~~~~~~  436 (504)
                      +|..++|++|+....      ..+.    -......+++-..-.+. ++ .++..++.+       .+|.+-+.+... .
T Consensus       156 ~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~  224 (282)
T PF15492_consen  156 HPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS-R  224 (282)
T ss_pred             cCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee-c
Confidence            999888888765322      0000    00111222222222111 11 112222221       233333222111 1


Q ss_pred             ecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccC
Q 010669          437 ESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       437 ~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      .. .....|..|..+|||..||+...+  +.+|++    ...+....+..
T Consensus       225 ~~-~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i----PsL~~~~~W~~  269 (282)
T PF15492_consen  225 QG-QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI----PSLRLQRSWKQ  269 (282)
T ss_pred             cc-cCCCceEEEEECCCCCEEEEEEcCCeEEEEec----Ccchhhcccch
Confidence            11 125689999999999999999887  999999    44555544443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.83  E-value=2.8e-06  Score=84.42  Aligned_cols=220  Identities=17%  Similarity=0.134  Sum_probs=133.2

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeE
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ  314 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  314 (504)
                      ++.+++++.+|.|+.+|..+|+.+..+............  ++..++.++.+|.+..+|..++   +........ +.+.
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG---~~~W~~~~~-~~~~  138 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDG---KELWRAKLS-SEVL  138 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCC---cEeeeeccC-ceee
Confidence            678888889999999999999988766543322222222  5677888899999999998775   333322211 2222


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 010669          315 AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK  394 (504)
Q Consensus       315 ~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~  394 (504)
                      +.-.. .+..++.++.+|.+..||.++|+.+................+...  .+..++++..+|.+..+|.++++.+..
T Consensus       139 ~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~  215 (377)
T TIGR03300       139 SPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWE  215 (377)
T ss_pred             cCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeee
Confidence            11111 355777788899999999999988776643211000000011111  124677888899999999999987654


Q ss_pred             eeCCC--C--C------e-EEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669          395 FDGHV--G--A------V-TAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA  462 (504)
Q Consensus       395 ~~~~~--~--~------i-~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~  462 (504)
                      .....  +  .      + ....+  .+..++.++.++ ++.||..+++.+......    ......  ..+..+++++.
T Consensus       216 ~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~vyv~~~  287 (377)
T TIGR03300       216 QRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS----SYQGPA--VDDNRLYVTDA  287 (377)
T ss_pred             eccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC----CccCce--EeCCEEEEECC
Confidence            32110  0  0      0 11112  244666667676 999999998876655422    111222  24566666666


Q ss_pred             c--EEEEEeec
Q 010669          463 D--IRVYQVAS  471 (504)
Q Consensus       463 d--i~vw~~~~  471 (504)
                      +  +..+|...
T Consensus       288 ~G~l~~~d~~t  298 (377)
T TIGR03300       288 DGVVVALDRRS  298 (377)
T ss_pred             CCeEEEEECCC
Confidence            6  77777633

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=7.1e-08  Score=90.87  Aligned_cols=217  Identities=18%  Similarity=0.154  Sum_probs=153.0

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeC-CCcEEEEcCCCCceEEEcccCccceeEEEEe-eCC----CEEEEEeCCCcEEEE
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGV-DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV-TEG----DLFLTGSADKTVRVW  292 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-~~~----~~l~s~s~dg~i~iw  292 (504)
                      ...|-..|.+++.+.++.++++++. |..++++|+.+-..+..++-.. ....+.|. ..|    ..-++.-.+|.+.|+
T Consensus        49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~sg~i~Vv  127 (558)
T KOG0882|consen   49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-LPGFAEWVTSKGDKISLIAVSLFKSGKIFVV  127 (558)
T ss_pred             hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc-CCCceEEecCCCCeeeeEEeecccCCCcEEE
Confidence            4557778999999999999999887 9999999988765543332111 11122232 223    123334468899999


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC------CeEEEEeec----CCCCCCCCCeEE
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS------GICLTQVSD----AGTDGRPEGYTS  362 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~----~~~~~~~~~v~~  362 (504)
                      |-..+.. +....-.-|..+|..+.+++.++.+++....|.|..|....      .+....+..    .+.........+
T Consensus       128 D~~~d~~-q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts  206 (558)
T KOG0882|consen  128 DGFGDFC-QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS  206 (558)
T ss_pred             CCcCCcC-ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence            9765431 23333456999999999999999999999999999999873      111111110    001123456789


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC--------------------------------CC-CCeEEEEEcC
Q 010669          363 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG--------------------------------HV-GAVTAISFSE  409 (504)
Q Consensus       363 ~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~--------------------------------~~-~~i~~l~~s~  409 (504)
                      +.|+|+|..+.+-+.|..|+++++++++.++.+..                                |. ..-+.+.|..
T Consensus       207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde  286 (558)
T KOG0882|consen  207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE  286 (558)
T ss_pred             eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence            99999999999999999999999999876554321                                11 1345678999


Q ss_pred             CCcEEEEEeCCcEEEEEcCCCcceeeee
Q 010669          410 NGYYLATAAHDGVKLWDLRKLKNFRSFE  437 (504)
Q Consensus       410 ~g~~l~s~~~d~v~vwd~~~~~~~~~~~  437 (504)
                      .|++|+-|+-=||++.++.++.+.+.+.
T Consensus       287 s~~flly~t~~gikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  287 SGNFLLYGTILGIKVINLDTNTVVRILG  314 (558)
T ss_pred             CCCEEEeecceeEEEEEeecCeEEEEec
Confidence            9999999998899999999888776553

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.76  E-value=4.4e-08  Score=85.98  Aligned_cols=150  Identities=14%  Similarity=0.176  Sum_probs=96.3

Q ss_pred             ccCCCEEEEEeCCCcEEEEcCCCCc-eEEEcccCccceeEEEEeeCCCEEEEEeC-----CCcEEEEeCCCCCCcceeEE
Q 010669          232 HYSKDVIATGGVDTNAVLFDRPSGQ-IVTTLSGHSKKVTSVKFVTEGDLFLTGSA-----DKTVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       232 s~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~  305 (504)
                      +--++.+++++.||.+.+++.+.-. ....+..-...-.+.++...++++.++..     -+..+.|+++..+.+..  .
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~--~  175 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP--S  175 (319)
T ss_pred             cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccc--c
Confidence            3446789999999999999875411 11111111111222333345555554432     23455666554321111  1


Q ss_pred             eccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEE
Q 010669          306 LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKI  383 (504)
Q Consensus       306 ~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~i  383 (504)
                       ..-...|.+++-||.. +.+++|+.||.+.+||.+.......+    ...|+..+..+-||| ++..|+++++||.+.-
T Consensus       176 -~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~----l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~  250 (319)
T KOG4714|consen  176 -KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL----LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH  250 (319)
T ss_pred             -ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH----HHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence             1112349999999965 56777888999999999987544433    337888999999999 7889999999999999


Q ss_pred             EEcCC
Q 010669          384 WDVKS  388 (504)
Q Consensus       384 wd~~~  388 (504)
                      ||..+
T Consensus       251 wdas~  255 (319)
T KOG4714|consen  251 WDAST  255 (319)
T ss_pred             EcCCC
Confidence            99763

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.75  E-value=1e-08  Score=87.22  Aligned_cols=54  Identities=30%  Similarity=0.489  Sum_probs=48.7

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh----------------cCCCCCCCCCCCCCccccccC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD----------------YGKCPVTGEPLTMDDIVPIKT   55 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~p~~~~~~~~~~~~~~~~   55 (504)
                      +.|+|+.+..++||+++ +||+|++.||.+|+..                ..+||++..+++..+|+||-.
T Consensus        19 ~~CpICld~~~dPVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg   88 (193)
T PLN03208         19 FDCNICLDQVRDPVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG   88 (193)
T ss_pred             cCCccCCCcCCCcEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence            46999999999999996 9999999999999863                247999999999999999975

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.72  E-value=6.3e-06  Score=87.15  Aligned_cols=200  Identities=13%  Similarity=0.193  Sum_probs=134.5

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC----CCCC
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS----EDGN  299 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~----~~~~  299 (504)
                      ..|.++.|..+++-++.+...|.|.+-|..+.... ....-...|.+++|+||+..++..+.++++.+-+-.    ....
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            58999999999999999999999999988766432 222234679999999999999888888887765420    0000


Q ss_pred             ----------------cceeEEeccC---------------------CcCeEEEEEccCCCEEEEEe----CC-CeEEEE
Q 010669          300 ----------------YDCKHTLKDH---------------------TAEVQAVTVHATNKYFVTAS----LD-NTWCFY  337 (504)
Q Consensus       300 ----------------~~~~~~~~~h---------------------~~~v~~l~~~p~~~~l~s~s----~d-g~i~iw  337 (504)
                                      .+....+.+.                     .+.=+.|.|--||.+|++..    .+ ..|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                            0101112111                     11123588999999998842    23 789999


Q ss_pred             ECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe---CCCcEEEEEcCCC----ceeeeeeCCCCCeEEEEEcCC
Q 010669          338 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVKSQ----ANVAKFDGHVGAVTAISFSEN  410 (504)
Q Consensus       338 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~---~dg~I~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~  410 (504)
                      |-+ |..-..-.     .....-.+++|-|.|.++++-.   +|+.|.+|.- +|    .....+......|..++|+.+
T Consensus       228 drE-g~Lns~se-----~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  228 DRE-GALNSTSE-----PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             ccc-chhhcccC-----cccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCC
Confidence            977 43222111     2223457899999999998853   4567888874 33    222233333445999999999


Q ss_pred             CcEEEE---EeCCc-EEEEEcCCCc
Q 010669          411 GYYLAT---AAHDG-VKLWDLRKLK  431 (504)
Q Consensus       411 g~~l~s---~~~d~-v~vwd~~~~~  431 (504)
                      +..|++   ..... |++|-+.+..
T Consensus       301 sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  301 SDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CCceeeeecccccceEEEEEecCeE
Confidence            999998   44455 9999987754

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=8.8e-06  Score=76.12  Aligned_cols=236  Identities=9%  Similarity=0.051  Sum_probs=134.4

Q ss_pred             EEEEcCCCCceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC-CE
Q 010669          247 AVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KY  324 (504)
Q Consensus       247 i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~  324 (504)
                      +++.+..+.+....+.+|...|.+++|+|..+ ++..++.+..|+|.|+++.   .++..+..+ ..+++++|.-+. ++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~  250 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHV  250 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcce
Confidence            66666665555666778889999999999766 7889999999999999985   556666666 789999998765 57


Q ss_pred             EEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEEC------CCCCEEEEEeCCCcEEEEEcCCC----ceeee
Q 010669          325 FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH------PDGLILGTGTSEALVKIWDVKSQ----ANVAK  394 (504)
Q Consensus       325 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~------pdg~~l~~g~~dg~I~iwd~~~~----~~~~~  394 (504)
                      |..|...|.|.+||++..+........  .-...+|..++.-      +.|.+++....+  +..|.+.-.    .++..
T Consensus       251 IYaGl~nG~VlvyD~R~~~~~~~e~~a--~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle  326 (463)
T KOG1645|consen  251 IYAGLQNGMVLVYDMRQPEGPLMELVA--NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE  326 (463)
T ss_pred             eEEeccCceEEEEEccCCCchHhhhhh--hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc
Confidence            778888999999999876433221110  0111234443332      234444443332  445655321    12222


Q ss_pred             eeCCCCCeEEEEEcCCCc-EEEEEeCC----cEE----EEEcCCCcceeeeec----CC-CCCCeeEEEE-CCCCCEEEE
Q 010669          395 FDGHVGAVTAISFSENGY-YLATAAHD----GVK----LWDLRKLKNFRSFES----SD-SETPTNSVDF-DHSGSYLAV  459 (504)
Q Consensus       395 ~~~~~~~i~~l~~s~~g~-~l~s~~~d----~v~----vwd~~~~~~~~~~~~----~~-~~~~v~~i~~-~~~g~~l~~  459 (504)
                      +. ..+...++.+.+-.+ .|++.-.+    .++    --|.+.|..+..-..    .. ..-.-....+ .++.++++.
T Consensus       327 le-~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~  405 (463)
T KOG1645|consen  327 LE-PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV  405 (463)
T ss_pred             cC-CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence            22 234555566655333 34443331    011    112222222211110    00 0000111222 345577776


Q ss_pred             EeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          460 ASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       460 ~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      .+.+   +.+||.    .+++.++++.-   ..+|.++..+.
T Consensus       406 ~gd~tn~lil~D~----~s~evvQ~l~~---~epv~Dicp~~  440 (463)
T KOG1645|consen  406 VGDSTNELILQDP----HSFEVVQTLAL---SEPVLDICPND  440 (463)
T ss_pred             ecCCcceeEEecc----chhheeeeccc---Ccceeecceee
Confidence            6555   999998    77888888865   45666665554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.66  E-value=1.1e-05  Score=74.59  Aligned_cols=191  Identities=12%  Similarity=0.139  Sum_probs=120.1

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe-ccC---
Q 010669          234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL-KDH---  309 (504)
Q Consensus       234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~h---  309 (504)
                      ++..+++++.++.++.||..+|+.+..+.. .+.+.... ...+..++.++.++.+..+|..++   ...... ...   
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG---~~~W~~~~~~~~~  109 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTG---KVLWSIYLTSSPP  109 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTS---CEEEEEEE-SSCT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCc---ceeeeeccccccc
Confidence            567777778999999999999998877764 22222212 224556777778889999998876   333331 111   


Q ss_pred             CcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC------CeEEEEECCCCCEEEEEeCCCcEEE
Q 010669          310 TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE------GYTSAAFHPDGLILGTGTSEALVKI  383 (504)
Q Consensus       310 ~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------~v~~~~~~pdg~~l~~g~~dg~I~i  383 (504)
                      ............++.++.+..++.|..+|+++|+.+........ ....      .+..-....++ .++.++.+|.+.-
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~  187 (238)
T PF13360_consen  110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP-RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA  187 (238)
T ss_dssp             CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred             cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC-CCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence            11122233333488899999899999999999999887764211 1111      12233333345 6666677775444


Q ss_pred             EEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCccee
Q 010669          384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR  434 (504)
Q Consensus       384 wd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~  434 (504)
                      +|+.+++.+....  ...+..+ ...++..|+.++.++ |..||+++++...
T Consensus       188 ~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  188 VDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            4999998664333  2233332 345667777777666 9999999998654

...

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=6.7e-09  Score=90.29  Aligned_cols=51  Identities=35%  Similarity=0.540  Sum_probs=48.2

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCC-CCCCCCCCCCCccccc
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGK-CPVTGEPLTMDDIVPI   53 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~   53 (504)
                      .|.||.+++.+||++| ||.+|||.-|++|++.-|. ||+|+.+|+.++|||=
T Consensus       213 cgkIt~el~~~pvi~p-sgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN  264 (284)
T KOG4642|consen  213 CGKITLELMREPVITP-SGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPN  264 (284)
T ss_pred             hhhhhHHhhcCCccCc-cccchhHHHHHHHHHHhccCCchhcccCCHHhhccc
Confidence            4889999999999998 8999999999999999996 9999999999999874

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=4.3e-07  Score=91.13  Aligned_cols=246  Identities=14%  Similarity=0.148  Sum_probs=158.9

Q ss_pred             cCCCCCeEEEEecc-----------CC-------CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE
Q 010669          220 KTSKPGIVSLDIHY-----------SK-------DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL  281 (504)
Q Consensus       220 ~~~~~~I~~~~~s~-----------~~-------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  281 (504)
                      ..|.++.++....|           .|       .++|.|...|+|.|+|+.++.....+..|++.|.++.|..+.. |+
T Consensus       404 g~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lv  482 (1062)
T KOG1912|consen  404 GSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LV  482 (1062)
T ss_pred             CCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EE
Confidence            45777777776654           22       2688999999999999999999999999999999999975544 44


Q ss_pred             EEeC----------CCcEEEEeCCCCCCcceeEEe-ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEE----
Q 010669          282 TGSA----------DKTVRVWQGSEDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT----  346 (504)
Q Consensus       282 s~s~----------dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~----  346 (504)
                      +.+.          -+.+.+-|++++-. +..+.+ .....+|..+..+..+.|++..-.|.-+.+||+++..++.    
T Consensus       483 Sfsys~~n~~sg~vrN~l~vtdLrtGls-k~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~  561 (1062)
T KOG1912|consen  483 SFSYSHVNSASGGVRNDLVVTDLRTGLS-KRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL  561 (1062)
T ss_pred             EeeeccccccccceeeeEEEEEcccccc-cccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh
Confidence            3332          24566778887522 222222 2345789999999999999999999999999996532211    


Q ss_pred             ------EeecC--C--------C-------------CCCCCCeE---------------------------EEEECCCCC
Q 010669          347 ------QVSDA--G--------T-------------DGRPEGYT---------------------------SAAFHPDGL  370 (504)
Q Consensus       347 ------~~~~~--~--------~-------------~~~~~~v~---------------------------~~~~~pdg~  370 (504)
                            .+...  .        .             ......+.                           .++|  .+.
T Consensus       562 a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d  639 (1062)
T KOG1912|consen  562 ALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDD  639 (1062)
T ss_pred             cCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCC
Confidence                  11000  0        0             00000111                           1222  245


Q ss_pred             EEEEEeCCCcEEEEEcCCCceee--eeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669          371 ILGTGTSEALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSV  448 (504)
Q Consensus       371 ~l~~g~~dg~I~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i  448 (504)
                      .++.|..+|.+.+||+...+...  ....|........+-|....+++--.|.+-+||.+....+..+.+.+....+..+
T Consensus       640 ~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldv  719 (1062)
T KOG1912|consen  640 ILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDV  719 (1062)
T ss_pred             eeEeecccCceeEEecccccccCccCCCCchhhheecccCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEE
Confidence            79999999999999985443222  1222333344445556444566666788999999988888888655445556667


Q ss_pred             EECCCCCEEEEEeCcEEEEEe
Q 010669          449 DFDHSGSYLAVASADIRVYQV  469 (504)
Q Consensus       449 ~~~~~g~~l~~~~~di~vw~~  469 (504)
                      .|+.....++..++.+++-..
T Consensus       720 dlc~~~~~~l~~d~~~Rf~~m  740 (1062)
T KOG1912|consen  720 DLCEKSPLVLPNDNKERFRVM  740 (1062)
T ss_pred             EecccCceecCCCCceeEEec
Confidence            776665555544433665554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.63  E-value=9.4e-08  Score=60.53  Aligned_cols=39  Identities=38%  Similarity=0.844  Sum_probs=36.7

Q ss_pred             CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669          255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       255 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd  293 (504)
                      ++++.++.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.60  E-value=1.2e-05  Score=74.45  Aligned_cols=190  Identities=9%  Similarity=0.113  Sum_probs=125.3

Q ss_pred             EEeccCCCEEEEEe-----CCCcEEEEcCC-CCceEEEcccCccceeEEEEeeCCCEEEEEeC-----------------
Q 010669          229 LDIHYSKDVIATGG-----VDTNAVLFDRP-SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-----------------  285 (504)
Q Consensus       229 ~~~s~~~~~l~sg~-----~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-----------------  285 (504)
                      -.||+||++|++.-     ..|.|-|||.. +.+.+..+..|.-.-..+.+.|||+.|+++..                 
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            57999999999864     35889999998 66778888888877888999999987777631                 


Q ss_pred             -CCcEEEEeCCCCCCcceeEEe--ccCCcCeEEEEEccCCCEEEEEeCCCe-------EEEEECCCCeEEEEeecC--CC
Q 010669          286 -DKTVRVWQGSEDGNYDCKHTL--KDHTAEVQAVTVHATNKYFVTASLDNT-------WCFYDLSSGICLTQVSDA--GT  353 (504)
Q Consensus       286 -dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~~--~~  353 (504)
                       +-++.+.|..++. ......+  ..|.-.|..+++.++|..++..-..|.       +.+++....  ...+...  ..
T Consensus       136 M~psL~~ld~~sG~-ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~  212 (305)
T PF07433_consen  136 MQPSLVYLDARSGA-LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQW  212 (305)
T ss_pred             cCCceEEEecCCCc-eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHH
Confidence             2234444544431 1122224  346678999999988876666544332       444443322  2222110  00


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEE
Q 010669          354 DGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKL  424 (504)
Q Consensus       354 ~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~v  424 (504)
                      ..-...+-+++++++|.++++.+ ..|.+.+||..+++.+....-  ..+..++-.+++ ++++.+.+.+..
T Consensus       213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G~~~~  281 (305)
T PF07433_consen  213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQGQLIR  281 (305)
T ss_pred             HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCccEEE
Confidence            12235788999999998776655 567899999999988776543  356777777777 666665554433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.55  E-value=3.7e-06  Score=85.36  Aligned_cols=107  Identities=13%  Similarity=0.159  Sum_probs=82.6

Q ss_pred             EEeccCCCEEEEEe----CCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          229 LDIHYSKDVIATGG----VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       229 ~~~s~~~~~l~sg~----~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      ..|+|...++++++    ..|.|.|| .++|++-+... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.   ....
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e~ht   95 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---ETHT   95 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCc---eeee
Confidence            45888888877775    46788888 35566543332 1223677999998888999999999999987763   3333


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECC
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS  340 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~  340 (504)
                      ....|..+|..+.|+++|..++++..-|.+.+|...
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            345799999999999999999999999999999775

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.54  E-value=3.1e-07  Score=58.07  Aligned_cols=38  Identities=18%  Similarity=0.493  Sum_probs=36.2

Q ss_pred             ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEE
Q 010669          301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD  338 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd  338 (504)
                      +++.++.+|.+.|.+++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.50  E-value=2.7e-05  Score=76.41  Aligned_cols=260  Identities=16%  Similarity=0.164  Sum_probs=142.9

Q ss_pred             ccCCCEEEEE---------eCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669          232 HYSKDVIATG---------GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       232 s~~~~~l~sg---------~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      |||+++++..         +..+.+.+||+.+++....... ...+....|+|+|+.++... ++.|.+++..++.  ..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~--~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ--ET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE--EE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCC--eE
Confidence            5777776663         2346799999998765544333 67789999999999888775 4689999876641  11


Q ss_pred             eEEecc-------C---------CcCeEEEEEccCCCEEEEEeCCC-e--------------------------------
Q 010669          303 KHTLKD-------H---------TAEVQAVTVHATNKYFVTASLDN-T--------------------------------  333 (504)
Q Consensus       303 ~~~~~~-------h---------~~~v~~l~~~p~~~~l~s~s~dg-~--------------------------------  333 (504)
                      ..+..+       -         -+.-..+-|+||+++|+....|. .                                
T Consensus        77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np  156 (353)
T PF00930_consen   77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP  156 (353)
T ss_dssp             ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred             EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence            111111       0         11235688999999888764331 1                                


Q ss_pred             ---EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe--CC---CcEEEEEcCCCceeeeeeC-CCC---C
Q 010669          334 ---WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT--SE---ALVKIWDVKSQANVAKFDG-HVG---A  401 (504)
Q Consensus       334 ---i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~--~d---g~I~iwd~~~~~~~~~~~~-~~~---~  401 (504)
                         +.++|+.+++....-...........+..+.|.+++..|++.-  .+   ..+.++|..++.....+.. ..+   .
T Consensus       157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~  236 (353)
T PF00930_consen  157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV  236 (353)
T ss_dssp             EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred             ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence               2334444433221110000012234578899999988444332  22   2467778877654333321 222   2


Q ss_pred             eEEEEEc-CCC-cEEEEEeCCc---EEEEEcCCCcceeeeecCCCCCCee-EEEECCCCCEEEE-EeCc----EEEEEee
Q 010669          402 VTAISFS-ENG-YYLATAAHDG---VKLWDLRKLKNFRSFESSDSETPTN-SVDFDHSGSYLAV-ASAD----IRVYQVA  470 (504)
Q Consensus       402 i~~l~~s-~~g-~~l~s~~~d~---v~vwd~~~~~~~~~~~~~~~~~~v~-~i~~~~~g~~l~~-~~~d----i~vw~~~  470 (504)
                      -....|. +++ .+|.....+|   |.+++...+... .+...  ...|. -+.|+++++.|+. +..+    -.||.+.
T Consensus       237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G--~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~  313 (353)
T PF00930_consen  237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG--DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS  313 (353)
T ss_dssp             SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S--SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred             ecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC--ceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence            2345554 554 4444555555   788888766533 33322  45564 4788998876654 4432    7888875


Q ss_pred             ccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          471 SVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       471 ~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ..  ....+..+...  .+.-..+.|+|+|+.
T Consensus       314 ~~--~~~~~~~LT~~--~~~~~~~~~Spdg~y  341 (353)
T PF00930_consen  314 LD--SGGEPKCLTCE--DGDHYSASFSPDGKY  341 (353)
T ss_dssp             TT--ETTEEEESSTT--SSTTEEEEE-TTSSE
T ss_pred             eC--CCCCeEeccCC--CCCceEEEECCCCCE
Confidence            53  23444555443  222268999999874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.45  E-value=9.3e-05  Score=73.94  Aligned_cols=232  Identities=12%  Similarity=0.073  Sum_probs=133.1

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeE-EEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCe
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTS-VKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV  313 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  313 (504)
                      +..++.++.+|.++.+|..+|+.+....... .+.+ -..  .+..++.+..+|.+..+|..++   +.+-.+......+
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG---~~~W~~~~~~~~~  193 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDG---AVKWTVNLDVPSL  193 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCC---CEeeeecCCCCcc
Confidence            5567778889999999999999887766432 2222 111  2446777888899999999886   3333322111000


Q ss_pred             E-EEEEcc--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCC--CCeEEEEECC--CCCEEEEEeCCCcEEEEEc
Q 010669          314 Q-AVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAAFHP--DGLILGTGTSEALVKIWDV  386 (504)
Q Consensus       314 ~-~l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p--dg~~l~~g~~dg~I~iwd~  386 (504)
                      . ....+|  .+..++.++.+|.+..+|..+|+...........+..  .....+..+|  .+..+++++.+|.+..+|.
T Consensus       194 ~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~  273 (394)
T PRK11138        194 TLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL  273 (394)
T ss_pred             cccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence            0 000011  2345777888999999999998876554321110000  0011112233  3456667778999999999


Q ss_pred             CCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--
Q 010669          387 KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--  463 (504)
Q Consensus       387 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--  463 (504)
                      .+++.+-....  +....+..  .+..|+.++.++ +..+|..+++.+-...... .....+...  .+.+|++++.+  
T Consensus       274 ~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~  346 (394)
T PRK11138        274 RSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGY  346 (394)
T ss_pred             CCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccC-CCcccCCEE--ECCEEEEEeCCCE
Confidence            99987655431  11122222  455666667777 9999999887654433211 111122222  25667777777  


Q ss_pred             EEEEEeeccCccceeEEEcc
Q 010669          464 IRVYQVASVKADWNCIKTFP  483 (504)
Q Consensus       464 i~vw~~~~~~~~~~~i~~~~  483 (504)
                      +.+.|.    .+++.+..++
T Consensus       347 l~~ld~----~tG~~~~~~~  362 (394)
T PRK11138        347 LHWINR----EDGRFVAQQK  362 (394)
T ss_pred             EEEEEC----CCCCEEEEEE
Confidence            555565    4566665554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.44  E-value=2.7e-06  Score=87.12  Aligned_cols=149  Identities=20%  Similarity=0.307  Sum_probs=114.2

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC---------CCcEEEEeCC
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA---------DKTVRVWQGS  295 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~---------dg~i~iwd~~  295 (504)
                      +|+-++  .+++++++|...|+|.+-|..+.+.+.++..|++.|.++..  .|+.|++||.         |..|+|||++
T Consensus       179 ~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  179 GVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             ceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhh
Confidence            344444  35789999999999999999999999999999999988766  7899999975         4568999988


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEE---CCCCeE-EEEeecCCCCCCCCCeEEEEECCCCC
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYD---LSSGIC-LTQVSDAGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd---~~~~~~-~~~~~~~~~~~~~~~v~~~~~~pdg~  370 (504)
                      .-   +.+..+.-+.++ .-+.|+|. ...+++++..|...+-|   +.+... +..+.     .....+..++++++|.
T Consensus       255 mm---ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~-----p~~s~i~~fDiSsn~~  325 (1118)
T KOG1275|consen  255 MM---RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN-----PNGSGISAFDISSNGD  325 (1118)
T ss_pred             hh---hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEc-----cCCCcceeEEecCCCc
Confidence            75   333334334343 56788885 45788889999999998   443322 22221     2234599999999999


Q ss_pred             EEEEEeCCCcEEEEEc
Q 010669          371 ILGTGTSEALVKIWDV  386 (504)
Q Consensus       371 ~l~~g~~dg~I~iwd~  386 (504)
                      .++.|..+|.|.+|--
T Consensus       326 alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  326 ALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             eEEEecccCcEeeecC
Confidence            9999999999999973

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.40  E-value=8.3e-06  Score=81.63  Aligned_cols=210  Identities=11%  Similarity=0.123  Sum_probs=132.7

Q ss_pred             ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE
Q 010669          265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC  344 (504)
Q Consensus       265 ~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~  344 (504)
                      ...|.--++...+++++.|+.-|.+.+|+-..+.  .......+-.+.+..+..|++..+++.|+..|.|.++-+..+..
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchh--hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence            3345445566688999999999999999876542  22223333456677778899999999999999999998876433


Q ss_pred             EE-EeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC----ceeeeeeCCCCCeEEEEEcCCCcEEEEEeC
Q 010669          345 LT-QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ----ANVAKFDGHVGAVTAISFSENGYYLATAAH  419 (504)
Q Consensus       345 ~~-~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~  419 (504)
                      .. .+.......|...|++++|++++..+++|...|.|.+-.+.+.    .....+-...+.|..+... ++.+|++.. 
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl-  188 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL-  188 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh-
Confidence            22 1222223457889999999999999999999999998877662    1122222345677777665 444444443 


Q ss_pred             CcEEEEEcCCCcceeeeecCCCCC-CeeEEEECCC-----CCEEEEEeCcEEEEEeeccCccceeEEEc
Q 010669          420 DGVKLWDLRKLKNFRSFESSDSET-PTNSVDFDHS-----GSYLAVASADIRVYQVASVKADWNCIKTF  482 (504)
Q Consensus       420 d~v~vwd~~~~~~~~~~~~~~~~~-~v~~i~~~~~-----g~~l~~~~~di~vw~~~~~~~~~~~i~~~  482 (504)
                      -.-.++++...+. ..+......+ .-...+|-|.     ...|+++--..|+|..+-   .++.++++
T Consensus       189 ~r~~Lc~tE~eti-~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~---~G~V~~Th  253 (726)
T KOG3621|consen  189 TRCILCQTEAETI-TQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADF---AGEVIKTH  253 (726)
T ss_pred             hhhheeecchhHH-HHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeec---ceeEEEee
Confidence            3344566654432 2222211122 1234455543     345666666699998743   45555443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.40  E-value=8.7e-05  Score=78.88  Aligned_cols=207  Identities=13%  Similarity=0.180  Sum_probs=134.0

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC----CC
Q 010669          266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL----SS  341 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~----~~  341 (504)
                      +.|.++.|..+++.++.+..+|.|.+-|..+.    .......-...|.+++|+||+..++..+.++++.+-+-    -.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~----~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETL----ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccc----ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence            67999999999999999999999999988773    22222233567999999999999999988888776432    11


Q ss_pred             CeEE-------------------EEeecCCC----------------CCCCCCeEEEEECCCCCEEEEE-----eCCCcE
Q 010669          342 GICL-------------------TQVSDAGT----------------DGRPEGYTSAAFHPDGLILGTG-----TSEALV  381 (504)
Q Consensus       342 ~~~~-------------------~~~~~~~~----------------~~~~~~v~~~~~~pdg~~l~~g-----~~dg~I  381 (504)
                      .+.+                   ..+.....                ....+.=+.+.|--||.++++.     .....|
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI  224 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence            1111                   01110000                0011223468999999999983     233789


Q ss_pred             EEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeee--ecCCCCCCeeEEEECCCCC
Q 010669          382 KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSF--ESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       382 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~--~~~~~~~~v~~i~~~~~g~  455 (504)
                      +|||-. |..-..-....+.-.+++|-|.|.++++-..+   + |.+|.-.. -.-..+  ..+....++..++|+.++.
T Consensus       225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSD  302 (1265)
T ss_pred             EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC-ccccccccCCcccccchheeeecCCCC
Confidence            999975 43322222233445689999999999887433   4 88887443 222222  2222234589999999999


Q ss_pred             EEEE---EeCc--EEEEEeeccCccceeEE
Q 010669          456 YLAV---ASAD--IRVYQVASVKADWNCIK  480 (504)
Q Consensus       456 ~l~~---~~~d--i~vw~~~~~~~~~~~i~  480 (504)
                      .|++   ....  |++|-+..  ..|-.-+
T Consensus       303 iLAv~~~~~e~~~v~lwt~~N--yhWYLKq  330 (1265)
T KOG1920|consen  303 ILAVVTSNLENSLVQLWTTGN--YHWYLKQ  330 (1265)
T ss_pred             ceeeeecccccceEEEEEecC--eEEEEEE
Confidence            9998   3333  99998732  3454433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.37  E-value=0.00015  Score=66.29  Aligned_cols=199  Identities=11%  Similarity=0.168  Sum_probs=116.0

Q ss_pred             CCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccC-ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          224 PGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       224 ~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ..+..++|+|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.++++.......
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~  100 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL  100 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence            3599999999865 6667777888888886 47888776532 3557888888777777766678999999884432111


Q ss_pred             ee---EEec-----cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC---CeEEEEeec---CCCCCCCCCeEEEEECC
Q 010669          302 CK---HTLK-----DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS---GICLTQVSD---AGTDGRPEGYTSAAFHP  367 (504)
Q Consensus       302 ~~---~~~~-----~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~---~~~~~~~~~v~~~~~~p  367 (504)
                      ..   ..+.     .++..+-.++|.|.++.|+.+-......+|.+..   .........   .........+..++++|
T Consensus       101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p  180 (248)
T PF06977_consen  101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP  180 (248)
T ss_dssp             -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred             chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence            11   1111     3456689999999988888887776666666543   212111110   00112234578999999


Q ss_pred             -CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC---------CCeEEEEEcCCCcEEEEEeCCc-EEEE
Q 010669          368 -DGLILGTGTSEALVKIWDVKSQANVAKFDGHV---------GAVTAISFSENGYYLATAAHDG-VKLW  425 (504)
Q Consensus       368 -dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~g~~l~s~~~d~-v~vw  425 (504)
                       .|++++.+..+..|..+| .+|+.+..+.-..         ...-.|+|.++|.+.+++ +-+ .++|
T Consensus       181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence             677888888999999999 6777665543211         257889999999766554 555 5554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.35  E-value=9.1e-05  Score=72.89  Aligned_cols=240  Identities=16%  Similarity=0.190  Sum_probs=135.8

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce-------------------------------------------EEEc
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-------------------------------------------VTTL  261 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-------------------------------------------~~~~  261 (504)
                      .|+++.|+++..-|++|...|.|.||.....+.                                           ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            488999999988999999999999996432111                                           0111


Q ss_pred             ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEE--ecc------CCcCeEEEEEcc-----CC---CEE
Q 010669          262 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT--LKD------HTAEVQAVTVHA-----TN---KYF  325 (504)
Q Consensus       262 ~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~------h~~~v~~l~~~p-----~~---~~l  325 (504)
                      ....++|++++.| |=-+++.|..+|.+.|.|++..   ..+..  +..      ....|+++.|..     |+   -.+
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGP---avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGP---AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTT---EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCC---eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            2245789999987 4458999999999999999764   33322  222      234678888853     22   478


Q ss_pred             EEEeCCCeEEEEECC--C-CeEEEEeecCCCCCCCCCeEEEE-ECCC-C-------------------CEEEEEeCCCcE
Q 010669          326 VTASLDNTWCFYDLS--S-GICLTQVSDAGTDGRPEGYTSAA-FHPD-G-------------------LILGTGTSEALV  381 (504)
Q Consensus       326 ~s~s~dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~v~~~~-~~pd-g-------------------~~l~~g~~dg~I  381 (504)
                      ++|+..|.+.+|.+.  . +.....+... ...+...+..+. |+.+ |                   .-+++...+..+
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~-~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i  237 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGA-TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI  237 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEE-E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeec-cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence            899999999999874  1 2222222111 012233444333 3221 1                   123444456789


Q ss_pred             EEEEcCCCceeeeeeCCCCCeEEEEEc-----CCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCC--CCCeeEEEECCC
Q 010669          382 KIWDVKSQANVAKFDGHVGAVTAISFS-----ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS--ETPTNSVDFDHS  453 (504)
Q Consensus       382 ~iwd~~~~~~~~~~~~~~~~i~~l~~s-----~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~--~~~v~~i~~~~~  453 (504)
                      +++...+.+..+...........+.+-     ..+..|++-..+| |++|.+...+.+........  ...+....++++
T Consensus       238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~  317 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN  317 (395)
T ss_dssp             EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred             EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence            999998877665554222233344452     3577788888888 99999999998887776421  123556788999


Q ss_pred             CCEEEEEeCc-EEEEEe
Q 010669          454 GSYLAVASAD-IRVYQV  469 (504)
Q Consensus       454 g~~l~~~~~d-i~vw~~  469 (504)
                      |..++-.+.. +.++.+
T Consensus       318 Gdi~~~~gpsE~~l~sv  334 (395)
T PF08596_consen  318 GDIFYWTGPSEIQLFSV  334 (395)
T ss_dssp             S-EEEE-SSSEEEEEEE
T ss_pred             CCEEEEeCcccEEEEEE
Confidence            9999888776 555554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.35  E-value=4.8e-05  Score=76.36  Aligned_cols=118  Identities=16%  Similarity=0.192  Sum_probs=89.1

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE-cccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT-LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      ..|.--+++..+++++.|+.-|.+++|+...++.... ..+-.+.+..+..+++..+++.|+..|.|.++-+........
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            3444455667799999999999999999876654332 223445566677788888899999999999998776432222


Q ss_pred             eEEe---ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 010669          303 KHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS  341 (504)
Q Consensus       303 ~~~~---~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~  341 (504)
                      ...-   ..|...|++++|++++..+++|...|.|.+..+.+
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            2211   23678999999999999999999999999988876

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.34  E-value=1.8e-07  Score=91.97  Aligned_cols=198  Identities=13%  Similarity=0.217  Sum_probs=131.4

Q ss_pred             CCeEEEEeccCCC--EEEEEeCCCcEEEEcCCCCce--EEEcccCccceeEEEEee-CCCEEEEEe----CCCcEEEEeC
Q 010669          224 PGIVSLDIHYSKD--VIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVT-EGDLFLTGS----ADKTVRVWQG  294 (504)
Q Consensus       224 ~~I~~~~~s~~~~--~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~-~~~~l~s~s----~dg~i~iwd~  294 (504)
                      ..+.|+++..+.+  .+++|..+|.|.+-.+....-  .....+|....++++|++ |.+.|+.|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            4567888766544  789999999999987654321  334567888999999998 566677663    4678999999


Q ss_pred             CCCCC-cceeEEecc-CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCE
Q 010669          295 SEDGN-YDCKHTLKD-HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLI  371 (504)
Q Consensus       295 ~~~~~-~~~~~~~~~-h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~  371 (504)
                      .+.-. ....-.+.+ ......+++|..+.+.+++|.....++++|++.........      ....+..+...| .+++
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv------nTk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV------NTKYVQGITVDPFSPNY  210 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh------hhhhcccceecCCCCCc
Confidence            87411 111111222 33456688898888899999999999999998432211111      112466777888 6777


Q ss_pred             EEEEeCCCcEEEEE-cCCCc-eeeeeeCC----CCCeEEEEEcCCC-cEEEEEeCCc--EEEEEcC
Q 010669          372 LGTGTSEALVKIWD-VKSQA-NVAKFDGH----VGAVTAISFSENG-YYLATAAHDG--VKLWDLR  428 (504)
Q Consensus       372 l~~g~~dg~I~iwd-~~~~~-~~~~~~~~----~~~i~~l~~s~~g-~~l~s~~~d~--v~vwd~~  428 (504)
                      +++-. ||.|.+|| .++-+ ++..+...    ...+..++|+|.. ..+++...|.  |+++|+.
T Consensus       211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            76654 99999999 44432 23222211    2248999999943 3566666664  9999986

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=5.1e-07  Score=78.32  Aligned_cols=54  Identities=28%  Similarity=0.567  Sum_probs=49.2

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC--C-CCCCCCCCCCCccccccC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG--K-CPVTGEPLTMDDIVPIKT   55 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~p~~~~~~~~~~~~~~~~   55 (504)
                      |-|.|+-+..+|||||. |||.|+=-||-||++..+  + ||++.-.++.+.||||=.
T Consensus        48 FdCNICLd~akdPVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG  104 (230)
T KOG0823|consen   48 FDCNICLDLAKDPVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG  104 (230)
T ss_pred             eeeeeeccccCCCEEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence            34999999999999996 999999999999999664  3 899999999999999964

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.34  E-value=0.00028  Score=71.69  Aligned_cols=145  Identities=15%  Similarity=0.071  Sum_probs=95.0

Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe----------------------------------
Q 010669          331 DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT----------------------------------  376 (504)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~----------------------------------  376 (504)
                      .+.+.+.|.++.+...++...      .....++++|+|+++++.+                                  
T Consensus       214 ~~~vSvID~etmeV~~qV~Vd------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkd  287 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVD------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKA  287 (635)
T ss_pred             eEEEEEEECccceEEEEEEeC------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhC
Confidence            456777788877766665422      1345567777777776664                                  


Q ss_pred             ------CCCcEEEEEcCC----C-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcc-----------
Q 010669          377 ------SEALVKIWDVKS----Q-ANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKN-----------  432 (504)
Q Consensus       377 ------~dg~I~iwd~~~----~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~-----------  432 (504)
                            .++.|.++|.++    + +.+..+. -......+.++|||+++++++.- . |.|+|+.+.+.           
T Consensus       288 GK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~  366 (635)
T PRK02888        288 GKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA  366 (635)
T ss_pred             CCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence                  124577777776    2 3333333 34467789999999999888765 3 99999988663           


Q ss_pred             -eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeec------cCccceeEEEccCC
Q 010669          433 -FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS------VKADWNCIKTFPDL  485 (504)
Q Consensus       433 -~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~------~~~~~~~i~~~~~h  485 (504)
                       +.....   .......+|+++|+...+---|  +..|++..      +.+.+..+..++-|
T Consensus       367 vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~  425 (635)
T PRK02888        367 VVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVH  425 (635)
T ss_pred             EEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCC
Confidence             222222   3345678899999866666666  99999854      22335666666655

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.33  E-value=2.7e-05  Score=76.96  Aligned_cols=114  Identities=18%  Similarity=0.220  Sum_probs=81.2

Q ss_pred             eeEEEEee-CCCEEEEE----eCCCcE----EEEeCCCCCCcceeEEe-ccCCcCeEEEEEccCCCEEEEEeCCCeEEEE
Q 010669          268 VTSVKFVT-EGDLFLTG----SADKTV----RVWQGSEDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFY  337 (504)
Q Consensus       268 v~~l~~s~-~~~~l~s~----s~dg~i----~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iw  337 (504)
                      ..++.|+. ++..+.+.    +.+|.+    .+|+...+ ..+.+... -.....|.+.+++|+...++.|+.||.|.+|
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY  286 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence            46677765 33444443    334433    46666543 22333222 2567789999999999999999999999999


Q ss_pred             ECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 010669          338 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ  389 (504)
Q Consensus       338 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~  389 (504)
                      |...+.......       .-..+.++|||+|.++++|+..|.+.+||+.-+
T Consensus       287 D~~~~~t~~~ka-------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  287 DTTRGVTLLAKA-------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EcCCCeeeeeee-------cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            998774443321       245789999999999999999999999998543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.28  E-value=0.0028  Score=63.88  Aligned_cols=246  Identities=13%  Similarity=0.156  Sum_probs=133.5

Q ss_pred             eEEEEeccCCCEEEEE-eCCC----cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC-----------cE
Q 010669          226 IVSLDIHYSKDVIATG-GVDT----NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK-----------TV  289 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg-~~dg----~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg-----------~i  289 (504)
                      +....++|+|+++|.+ +..|    .++++|+.+|+.+...-.. .....+.|.++++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4467899999988765 3334    4999999999776532111 1123499999988766554333           37


Q ss_pred             EEEeCCCCCCcceeEEeccCCc-C-eEEEEEccCCCEEEEEeCC----CeEEEEECCCC----eEEEEeecCCCCCCCCC
Q 010669          290 RVWQGSEDGNYDCKHTLKDHTA-E-VQAVTVHATNKYFVTASLD----NTWCFYDLSSG----ICLTQVSDAGTDGRPEG  359 (504)
Q Consensus       290 ~iwd~~~~~~~~~~~~~~~h~~-~-v~~l~~~p~~~~l~s~s~d----g~i~iwd~~~~----~~~~~~~~~~~~~~~~~  359 (504)
                      ..|.+.+... .....+..... . ...+..++++++++..+..    ..+.+.|+..+    .....+..    .....
T Consensus       205 ~~~~~gt~~~-~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~  279 (414)
T PF02897_consen  205 YRHKLGTPQS-EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP----REDGV  279 (414)
T ss_dssp             EEEETTS-GG-G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE----SSSS-
T ss_pred             EEEECCCChH-hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC----CCCce
Confidence            7777766422 21233333332 2 6788889999987765432    35788888774    22222221    11122


Q ss_pred             eEEEEECCCCCEEEEEe---CCCcEEEEEcCCCce---eeeeeCCCC--CeEEEEEcCCCcEEEEEeCCc---EEEEEcC
Q 010669          360 YTSAAFHPDGLILGTGT---SEALVKIWDVKSQAN---VAKFDGHVG--AVTAISFSENGYYLATAAHDG---VKLWDLR  428 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~---~dg~I~iwd~~~~~~---~~~~~~~~~--~i~~l~~s~~g~~l~s~~~d~---v~vwd~~  428 (504)
                      ...+... .+.+++...   .++.|.-.++.....   ...+..+..  .+..+... .+.+++....++   |+++|+.
T Consensus       280 ~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  280 EYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECC
Confidence            2333333 444444332   346777778876652   224444544  45555553 334455555554   9999998


Q ss_pred             CCcceeeeecCCCCCCeeEEEECCCCCEEEEEeC--c--EEEEEeeccCccceeEE
Q 010669          429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA--D--IRVYQVASVKADWNCIK  480 (504)
Q Consensus       429 ~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~--d--i~vw~~~~~~~~~~~i~  480 (504)
                      .+.....+.... .+.|..+..+++++.+...-.  -  -.+|.++..+...+.++
T Consensus       358 ~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  358 DGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK  412 (414)
T ss_dssp             -TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred             CCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence            444455555543 345667776676665544332  2  67776655544444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.28  E-value=7.7e-05  Score=73.83  Aligned_cols=112  Identities=15%  Similarity=0.186  Sum_probs=78.1

Q ss_pred             EEEEEcc-CCCEEEEE----eCCCe----EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010669          314 QAVTVHA-TNKYFVTA----SLDNT----WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW  384 (504)
Q Consensus       314 ~~l~~~p-~~~~l~s~----s~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iw  384 (504)
                      .++.|+- ++..+.+.    +.+|.    ..+|++..++...... . .-.....+.|++++|+...++.|+.||.|.+|
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsv-t-sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSV-T-SIPLPSQVICCARSPSEDKLVLGCEDGSIILY  286 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEE-E-EEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence            4556654 33444443    23443    4567776554221111 0 11345689999999999999999999999999


Q ss_pred             EcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC
Q 010669          385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK  429 (504)
Q Consensus       385 d~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~  429 (504)
                      |...+...  +....-.++.++|+|+|.++++|++.| +.+||+.-
T Consensus       287 D~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  287 DTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            98766332  223445788999999999999999999 99999863

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.27  E-value=0.00024  Score=72.18  Aligned_cols=198  Identities=13%  Similarity=0.103  Sum_probs=118.2

Q ss_pred             CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC----cEEEEeCCCCCCcceeEEeccCCcCeEEEEEc
Q 010669          244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK----TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH  319 (504)
Q Consensus       244 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~  319 (504)
                      .+.+.+.|..+.+...++.-. +....+.++++|+++++.+.+.    ++..-+....   .....+.-  ..+  -.+.
T Consensus       214 ~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~---d~~vvfni--~~i--ea~v  285 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER---DWVVVFNI--ARI--EEAV  285 (635)
T ss_pred             eEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccC---ceEEEEch--HHH--HHhh
Confidence            455666777766666555432 2346678888999888776432    2222222111   11111100  000  0234


Q ss_pred             cCCCEEEEEeCCCeEEEEECCC-----CeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCce--
Q 010669          320 ATNKYFVTASLDNTWCFYDLSS-----GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQAN--  391 (504)
Q Consensus       320 p~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~~~--  391 (504)
                      ++|++...  .++.|.+.|..+     ...+..+..      ......+.++|||+++++++ .+.+|.|+|+.+.+.  
T Consensus       286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC------CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence            46776665  367899999998     344444432      24578899999999887765 488999999987553  


Q ss_pred             ----------eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC----------CcceeeeecCCCCCCeeEEE-
Q 010669          392 ----------VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK----------LKNFRSFESSDSETPTNSVD-  449 (504)
Q Consensus       392 ----------~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~----------~~~~~~~~~~~~~~~v~~i~-  449 (504)
                                +.+..- .......+|.++|+...+-.-|+ |..||+.+          ...+..+..+-   .+-.+. 
T Consensus       358 ~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y---~pgh~~~  433 (635)
T PRK02888        358 DGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHY---QPGHNHA  433 (635)
T ss_pred             hccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCC---ccceeee
Confidence                      222222 22345678999998888888887 99999876          23333344331   122222 


Q ss_pred             -----ECCCCCEEEEEe
Q 010669          450 -----FDHSGSYLAVAS  461 (504)
Q Consensus       450 -----~~~~g~~l~~~~  461 (504)
                           -.|+|+||++..
T Consensus       434 ~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        434 SMGETKEADGKWLVSLN  450 (635)
T ss_pred             cCCCcCCCCCCEEEEcc
Confidence                 267888888764

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.26  E-value=1.4e-06  Score=54.77  Aligned_cols=39  Identities=36%  Similarity=0.560  Sum_probs=32.8

Q ss_pred             cccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCC
Q 010669            3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVT   41 (504)
Q Consensus         3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   41 (504)
                      |+|..+.+.+||+...+||+|.+.+|++|++.+.+||+.
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            899999999996555699999999999999998789973

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.24  E-value=0.0014  Score=65.45  Aligned_cols=214  Identities=13%  Similarity=0.180  Sum_probs=112.7

Q ss_pred             cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc---ceeEEeccCCcCeEEEEEccCC
Q 010669          246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY---DCKHTLKDHTAEVQAVTVHATN  322 (504)
Q Consensus       246 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~l~~~p~~  322 (504)
                      .|.||+.. |+.+.++.-..+.|.++.|..+. .|+.-..||.+++||+.....+   .......-....+....+..+|
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            49999864 67777765444889999998754 5666779999999998642100   0011111111122222333344


Q ss_pred             CEEEEEeCCCeEEEEECCCCe-EEEEeec-CCCC--CCC-CCeE-EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 010669          323 KYFVTASLDNTWCFYDLSSGI-CLTQVSD-AGTD--GRP-EGYT-SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD  396 (504)
Q Consensus       323 ~~l~s~s~dg~i~iwd~~~~~-~~~~~~~-~~~~--~~~-~~v~-~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~  396 (504)
                        ++.-..++.+.+..-.... ....... ....  .+. .... ...++.+....+....++.+.+.+-...+.   +.
T Consensus       140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~  214 (410)
T PF04841_consen  140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID  214 (410)
T ss_pred             --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence              3333344554444322211 1111110 0000  000 0011 123444555555555555566444322211   22


Q ss_pred             CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEE
Q 010669          397 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQ  468 (504)
Q Consensus       397 ~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~  468 (504)
                       ..+++..+++||+|+++|.-..+| +.+.+..-.+.+..+.... ......+.|.-+...++.-...+.++.
T Consensus       215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~-~~~p~~~~WCG~dav~l~~~~~l~lvg  285 (410)
T PF04841_consen  215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS-KSPPKQMAWCGNDAVVLSWEDELLLVG  285 (410)
T ss_pred             -CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc-CCCCcEEEEECCCcEEEEeCCEEEEEC
Confidence             246899999999999999999888 8888765555555555432 356678888776655544422255443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.23  E-value=0.00032  Score=70.11  Aligned_cols=217  Identities=12%  Similarity=0.061  Sum_probs=124.7

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCcc----------cee-EEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK----------KVT-SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~----------~v~-~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  303 (504)
                      +..+++++.+|.+.-+|..+|+.+........          .+. .+..  .+..++.++.+|.+..+|..++.   ..
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~---~~  143 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGE---VA  143 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCC---Cc
Confidence            66778888899999999999988776542210          000 1111  35567788899999999998763   22


Q ss_pred             EEeccCCcCeEE-EEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCCc
Q 010669          304 HTLKDHTAEVQA-VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEAL  380 (504)
Q Consensus       304 ~~~~~h~~~v~~-l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg~  380 (504)
                      -..... +.+.+ ...  .+..++.++.+|.+.-+|..+|+.+..........   ... ..-+|  .+..++.++.+|.
T Consensus       144 W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~---~~~-~~~sP~v~~~~v~~~~~~g~  216 (394)
T PRK11138        144 WQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL---TLR-GESAPATAFGGAIVGGDNGR  216 (394)
T ss_pred             ccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc---ccc-CCCCCEEECCEEEEEcCCCE
Confidence            222211 12211 111  24567778889999999999999887765321100   000 00112  2335677788999


Q ss_pred             EEEEEcCCCceeeeeeCCC--C-----CeEEEEEcC--CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEE
Q 010669          381 VKIWDVKSQANVAKFDGHV--G-----AVTAISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF  450 (504)
Q Consensus       381 I~iwd~~~~~~~~~~~~~~--~-----~i~~l~~s~--~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~  450 (504)
                      +..+|..+++.+-.+....  +     ....+.-+|  .+..++.++.++ +..+|..+++.+.......    ...+..
T Consensus       217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~~  292 (394)
T PRK11138        217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFAV  292 (394)
T ss_pred             EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcEE
Confidence            9999999887665443110  0     011111122  234555666666 9999999988765543321    111222


Q ss_pred             CCCCCEEEEEeCc--EEEEEe
Q 010669          451 DHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       451 ~~~g~~l~~~~~d--i~vw~~  469 (504)
                        .+..+++++.+  +..++.
T Consensus       293 --~~~~vy~~~~~g~l~ald~  311 (394)
T PRK11138        293 --DGGRIYLVDQNDRVYALDT  311 (394)
T ss_pred             --ECCEEEEEcCCCeEEEEEC
Confidence              34455555555  555554

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=7.9e-07  Score=82.16  Aligned_cols=53  Identities=28%  Similarity=0.493  Sum_probs=51.0

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccccC
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKT   55 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~   55 (504)
                      .|+++..+.++||-++ +|.+||-..|..||..+|+.|+||++|+-.|||.++-
T Consensus        42 hC~lt~~Pfe~PvC~~-dg~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIkL~F   94 (518)
T KOG0883|consen   42 HCSLTMLPFEDPVCTV-DGTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIKLKF   94 (518)
T ss_pred             hceeccccccCccccc-CCcEEeeehhhHHHHHcCCCCCCCCccccccceeeee
Confidence            4999999999999995 8999999999999999999999999999999999985

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.22  E-value=0.002  Score=59.02  Aligned_cols=199  Identities=12%  Similarity=0.211  Sum_probs=110.6

Q ss_pred             EcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCCcceeEEeccC-CcCeEEEEEccCCCEEEEEeCCCeEEEE
Q 010669          260 TLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDH-TAEVQAVTVHATNKYFVTASLDNTWCFY  337 (504)
Q Consensus       260 ~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~l~s~s~dg~i~iw  337 (504)
                      .+.+-...+..++|.|+.+ ++++....+.|..++...    ..+..+.-. .+..-+|++..++.++++.-.++.+.++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G----~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG----KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC----CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence            4556666799999999755 666777788887777643    344444322 3567889998777777766668999999


Q ss_pred             ECCCCe------EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC---Cceeeee--------eCCCC
Q 010669          338 DLSSGI------CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS---QANVAKF--------DGHVG  400 (504)
Q Consensus       338 d~~~~~------~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~---~~~~~~~--------~~~~~  400 (504)
                      ++....      ....+.......++..+-.++|+|.++.|+++-...-..+|.++.   ...+...        .....
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence            884321      112222111223556799999999877777777777777777754   2222111        11334


Q ss_pred             CeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcceeeeecCCC-------CCCeeEEEECCCCCEEEEEeCc
Q 010669          401 AVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       401 ~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~-------~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      .+..+.++|. |.+++.+.... |..+| .+++.+..+.....       -...-.|+|+++|+..+++--+
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN  242 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN  242 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence            6889999996 45555555555 88899 66777666655421       1246789999999776665444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.20  E-value=0.0027  Score=59.94  Aligned_cols=229  Identities=19%  Similarity=0.201  Sum_probs=133.9

Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE--------
Q 010669          233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH--------  304 (504)
Q Consensus       233 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------  304 (504)
                      ..++.|+.|..+| +++++.........+. +...|..+...++-+.|++-+ |+.+.++++..-.......        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3578899999998 8999983332222222 233399999998777666554 4999999987532211000        


Q ss_pred             ---EeccCCcCeEEEE--EccCCCEEEEEeCCCeEEEEECCCC-----eEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          305 ---TLKDHTAEVQAVT--VHATNKYFVTASLDNTWCFYDLSSG-----ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       305 ---~~~~h~~~v~~l~--~~p~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                         ........+...+  -...+...+.+.....|.+|.....     +....+.      -+..+..++|.  ++.+++
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~------lp~~~~~i~~~--~~~i~v  153 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS------LPDPPSSIAFL--GNKICV  153 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE------cCCCcEEEEEe--CCEEEE
Confidence               0111223444444  1223444444555568888887653     2333433      23578899998  556777


Q ss_pred             EeCCCcEEEEEcCCCceeeeeeCC------------CCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCccee--eeecCC
Q 010669          375 GTSEALVKIWDVKSQANVAKFDGH------------VGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR--SFESSD  440 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~~~~~~~~------------~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~--~~~~~~  440 (504)
                      |..++ ..+.|+.++.....+...            ..++..+... ++.+|++...-++ +.|. .|+..+  .+.-  
T Consensus       154 ~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~~~~g~-fv~~-~G~~~r~~~i~W--  227 (275)
T PF00780_consen  154 GTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCYDNIGV-FVNK-NGEPSRKSTIQW--  227 (275)
T ss_pred             EeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEecceEE-EEcC-CCCcCcccEEEc--
Confidence            76554 778899876554333211            1234444444 4566654322222 2333 344333  2222  


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCC
Q 010669          441 SETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       441 ~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                       ...+.++++  ...||++.+.+ |.||++    .+++.++++...
T Consensus       228 -~~~p~~~~~--~~pyli~~~~~~iEV~~~----~~~~lvQ~i~~~  266 (275)
T PF00780_consen  228 -SSAPQSVAY--SSPYLIAFSSNSIEVRSL----ETGELVQTIPLP  266 (275)
T ss_pred             -CCchhEEEE--ECCEEEEECCCEEEEEEC----cCCcEEEEEECC
Confidence             235566666  45688888888 999999    778889988764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.17  E-value=0.00022  Score=71.17  Aligned_cols=143  Identities=15%  Similarity=0.129  Sum_probs=87.0

Q ss_pred             CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 010669          309 HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS  388 (504)
Q Consensus       309 h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~  388 (504)
                      .......+.++|+|+++++ +.||...++..........          +.-..++|.+.+. +|+-..++.|.|+.--.
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----------G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----------GSGLSFVWSSRNR-YAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----------EE-SEEEE-TSSE-EEEE-TTS-EEEEETTE
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc----------CceeEEEEecCcc-EEEEECCCeEEEEEcCc
Confidence            3345788999999999888 4577778887544433322          2346788998555 66766788899974323


Q ss_pred             CceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEE
Q 010669          389 QANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVY  467 (504)
Q Consensus       389 ~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw  467 (504)
                      ......+.. ...+..|-.   |.+|...+.+.|.+||..+++.++.+...    .|..+.|+++|.+++..+.+ +.|+
T Consensus        99 ~~~~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t~~~i~il  170 (443)
T PF04053_consen   99 NEVVKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVTKDSIYIL  170 (443)
T ss_dssp             E-TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S-SEEEE
T ss_pred             cccceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEeCCeEEEE
Confidence            333233432 123555543   88888887777999999999999999763    48999999999999999988 8888


Q ss_pred             Eeec
Q 010669          468 QVAS  471 (504)
Q Consensus       468 ~~~~  471 (504)
                      +++.
T Consensus       171 ~~~~  174 (443)
T PF04053_consen  171 KYNL  174 (443)
T ss_dssp             EE-H
T ss_pred             Eecc
Confidence            8743

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.0021  Score=63.72  Aligned_cols=220  Identities=15%  Similarity=0.126  Sum_probs=147.0

Q ss_pred             EEEEeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC---CCcEEEEeCCCCCCcce
Q 010669          227 VSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       227 ~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~  302 (504)
                      ..+++++.++ ..++...++.|.+.|..+........-.. ....++++++++.+..+..   ++++.+.|..+.   ..
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---~~  152 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---KV  152 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC---eE
Confidence            4677888877 55555566899999977777666554222 5678999999987776655   678888887765   34


Q ss_pred             eEEeccCCcCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC---
Q 010669          303 KHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE---  378 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d---  378 (504)
                      ......-..+ ..+++.|+|+.++.+. .++.|.+.|........ -..............+.+.|+|..+.+....   
T Consensus       153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~  230 (381)
T COG3391         153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS  230 (381)
T ss_pred             EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence            4443332234 8899999999766665 78899999977665553 1111011222345778999999966665443   


Q ss_pred             CcEEEEEcCCCceeeeeeCCCC-CeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCC-CCCeeEEEECC
Q 010669          379 ALVKIWDVKSQANVAKFDGHVG-AVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDS-ETPTNSVDFDH  452 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~-~~~v~~i~~~~  452 (504)
                      +.+...|..++.....-..-.. ....+.++|+|.++.+.... + +.+.|..+......+..... ...+..+++.+
T Consensus       231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~  308 (381)
T COG3391         231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP  308 (381)
T ss_pred             ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence            5899999988776654221111 56778999999998888555 4 99999988777666554321 22344555544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.16  E-value=0.00028  Score=74.32  Aligned_cols=145  Identities=14%  Similarity=0.167  Sum_probs=97.8

Q ss_pred             CCEEEEE-eCCCcEEEEeCCCCCCcceeEEeccCCcC-eEEEEEcc-----CCCEEEEEeCCCeEEEEECCCCe-EEEEe
Q 010669          277 GDLFLTG-SADKTVRVWQGSEDGNYDCKHTLKDHTAE-VQAVTVHA-----TNKYFVTASLDNTWCFYDLSSGI-CLTQV  348 (504)
Q Consensus       277 ~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~~p-----~~~~l~s~s~dg~i~iwd~~~~~-~~~~~  348 (504)
                      .++|+.. .....|.-.|+..+   +.+.....|... |..++-..     +....+.|-.+..+..||.+-.. .+..-
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~G---KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~  569 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERG---KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS  569 (794)
T ss_pred             cceEeecCCCCCceEEEecCCC---cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence            3344433 34577888888886   667777666543 55554321     13356677788899999998643 21111


Q ss_pred             ecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce-eeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEc
Q 010669          349 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDL  427 (504)
Q Consensus       349 ~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~  427 (504)
                      ... .-......+|++-+.+| +||+|+.+|.||+||- .++. ...+.+-..+|.+|..+.||+||++.+..-+.+++.
T Consensus       570 ~~k-~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  570 QSK-QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             ccc-ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            111 11334568888888887 5899999999999994 4433 334556678999999999999999888777777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.14  E-value=5.8e-05  Score=77.04  Aligned_cols=198  Identities=18%  Similarity=0.202  Sum_probs=130.5

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce---
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC---  302 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~---  302 (504)
                      +++++|+|..-+|+.|-.-|.+.+|...+.+.-.....|..+|..+.||++|..++++..-|.|.+|.....+..+.   
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~  141 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI  141 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence            67799999999999999999999999887777666778999999999999999999999999999998652211110   


Q ss_pred             ------------eEEec---------------cCCcCeE-EEEE-------------ccCCCEEEEEeCCCeEEEEECCC
Q 010669          303 ------------KHTLK---------------DHTAEVQ-AVTV-------------HATNKYFVTASLDNTWCFYDLSS  341 (504)
Q Consensus       303 ------------~~~~~---------------~h~~~v~-~l~~-------------~p~~~~l~s~s~dg~i~iwd~~~  341 (504)
                                  ...+.               +....+- -.-|             .|+|..|+.++.+|+|+..|-..
T Consensus       142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g  221 (1416)
T KOG3617|consen  142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNG  221 (1416)
T ss_pred             hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCC
Confidence                        00000               0000000 0001             34577888899999998887322


Q ss_pred             CeEEEEeec-------------------------------CC-------------CC-----------------------
Q 010669          342 GICLTQVSD-------------------------------AG-------------TD-----------------------  354 (504)
Q Consensus       342 ~~~~~~~~~-------------------------------~~-------------~~-----------------------  354 (504)
                      . +......                               .+             ..                       
T Consensus       222 ~-~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~  300 (1416)
T KOG3617|consen  222 R-QRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL  300 (1416)
T ss_pred             c-EEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh
Confidence            1 1111000                               00             00                       


Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-------ceeeeee---CCCCCeEEEEEcCCCcEEEEEeCCcEEE
Q 010669          355 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-------ANVAKFD---GHVGAVTAISFSENGYYLATAAHDGVKL  424 (504)
Q Consensus       355 ~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~-------~~~~~~~---~~~~~i~~l~~s~~g~~l~s~~~d~v~v  424 (504)
                      .....++|+++...+..+..|...|.+.+|--...       .....+.   ...+.|+.+.|.|--..++..+...|.+
T Consensus       301 e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~l  380 (1416)
T KOG3617|consen  301 ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVL  380 (1416)
T ss_pred             hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheee
Confidence            01245789999999999999999999999953221       1222332   2356899999998655555554444333

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.14  E-value=8.2e-07  Score=87.54  Aligned_cols=201  Identities=15%  Similarity=0.258  Sum_probs=131.2

Q ss_pred             ccceeEEEEeeCC--CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC-CCEEEEEe----CCCeEEEE
Q 010669          265 SKKVTSVKFVTEG--DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTAS----LDNTWCFY  337 (504)
Q Consensus       265 ~~~v~~l~~s~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s----~dg~i~iw  337 (504)
                      ...+.|+++.-+.  ..++.|..+|.|.+-....... .......+|....++++|++- .+.|+.|-    .|..+.||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-ccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            3446777765433  3688899999999988776422 122344578889999999984 45666653    25679999


Q ss_pred             ECCCCe--EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc-eeeeeeCCCCCeEEEEEcC-CCcE
Q 010669          338 DLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSE-NGYY  413 (504)
Q Consensus       338 d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~s~-~g~~  413 (504)
                      |+.++-  +.......+  +......+++|..+.+++.+|.....+.++|+|... ....+  ....+..+..+| .+.|
T Consensus       135 di~s~ltvPke~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY  210 (783)
T ss_pred             ecccccCCCcccccccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence            998872  221111110  123456689999999999999999999999998432 22222  233567788888 7888


Q ss_pred             EEEEeCCcEEEEE-cCCCcc-eeeeecCCC--CCCeeEEEECCCC-CEEEEEeCc---EEEEEee
Q 010669          414 LATAAHDGVKLWD-LRKLKN-FRSFESSDS--ETPTNSVDFDHSG-SYLAVASAD---IRVYQVA  470 (504)
Q Consensus       414 l~s~~~d~v~vwd-~~~~~~-~~~~~~~~~--~~~v~~i~~~~~g-~~l~~~~~d---i~vw~~~  470 (504)
                      +++..++-|.+|| .++.+. +..+.....  ...+..++|+|.. ..+++...|   |++|++.
T Consensus       211 ~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  211 FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            8887744499999 555433 222221111  2248899999965 355666666   7777763

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.13  E-value=0.00079  Score=59.90  Aligned_cols=104  Identities=12%  Similarity=0.063  Sum_probs=69.1

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeE-EEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcC
Q 010669          234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTS-VKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE  312 (504)
Q Consensus       234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~  312 (504)
                      -|++++.|...|.+++.+.++|.....+..-. .|.+ ....+++.++..|+.|++....|..+.   .++...+...+.
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~  137 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGT  137 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCce
Confidence            36789999999999999999997777665322 2322 233568899999999999999998875   566665543333


Q ss_pred             eEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 010669          313 VQAVTVHATNKYFVTASLDNTWCFYDLSS  341 (504)
Q Consensus       313 v~~l~~~p~~~~l~s~s~dg~i~iwd~~~  341 (504)
                      ..+-+..|-...|+.+...|.+.--....
T Consensus       138 f~sP~i~~g~~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  138 FVSPVIAPGDGSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             eccceecCCCceEEEEeccceEEEEccCC
Confidence            33444555334455555556554444443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.09  E-value=0.00043  Score=69.15  Aligned_cols=178  Identities=13%  Similarity=0.159  Sum_probs=96.7

Q ss_pred             CccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q 010669          264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI  343 (504)
Q Consensus       264 h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~  343 (504)
                      ..-....+.++|+|+++++ +.||...||.....   ....     .+.-....|.+ .+.+++-...+.|.++.--+..
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---cccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcCccc
Confidence            3345788999999998888 55678888873321   2211     24456788888 4456777778889996322222


Q ss_pred             EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEE
Q 010669          344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVK  423 (504)
Q Consensus       344 ~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~  423 (504)
                      ....+..      +..+..+-.   |.+|+..+.+ .|.+||+.+++.+..+...  +|..+.|+++|.+++..+.+.+.
T Consensus       101 ~~k~i~~------~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~  168 (443)
T PF04053_consen  101 VVKSIKL------PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIY  168 (443)
T ss_dssp             TT-----------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEE
T ss_pred             cceEEcC------CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEE
Confidence            2122221      112333332   8877777654 8999999999999998743  48999999999999999999888


Q ss_pred             EEEcCCC-----------cceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEE
Q 010669          424 LWDLRKL-----------KNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRV  466 (504)
Q Consensus       424 vwd~~~~-----------~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~v  466 (504)
                      +++....           ..+..+...  ...|.+.+|..+ -++++....++.
T Consensus       169 il~~~~~~~~~~~~~g~e~~f~~~~E~--~~~IkSg~W~~d-~fiYtT~~~lkY  219 (443)
T PF04053_consen  169 ILKYNLEAVAAIPEEGVEDAFELIHEI--SERIKSGCWVED-CFIYTTSNHLKY  219 (443)
T ss_dssp             EEEE-HHHHHHBTTTB-GGGEEEEEEE---S--SEEEEETT-EEEEE-TTEEEE
T ss_pred             EEEecchhcccccccCchhceEEEEEe--cceeEEEEEEcC-EEEEEcCCeEEE
Confidence            7775433           022222221  357889999876 334433332444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.013  Score=58.06  Aligned_cols=244  Identities=18%  Similarity=0.168  Sum_probs=152.8

Q ss_pred             eEEEEeccCCCEEEE-EeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCE-EEEEeCCCcEEEEeCCCCCCccee
Q 010669          226 IVSLDIHYSKDVIAT-GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       226 I~~~~~s~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~  303 (504)
                      ...+.+.+++..+.. -.....+.+.+................-..++.++.+.. .+....++.|.+.|....   ...
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~---~~~  109 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN---TVL  109 (381)
T ss_pred             CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccc---cee
Confidence            445667777753333 222224555554422222212211133456788887774 455555689999996654   333


Q ss_pred             EEeccCCcCeEEEEEccCCCEEEEEeC---CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCC
Q 010669          304 HTLKDHTAEVQAVTVHATNKYFVTASL---DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEA  379 (504)
Q Consensus       304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg  379 (504)
                      ..... ......++++|+++.+..+..   ++++.+.|-.+++.......    +. .+ ..++++|+|..+.+.. .++
T Consensus       110 ~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v----G~-~P-~~~a~~p~g~~vyv~~~~~~  182 (381)
T COG3391         110 GSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV----GN-TP-TGVAVDPDGNKVYVTNSDDN  182 (381)
T ss_pred             eEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec----CC-Cc-ceEEECCCCCeEEEEecCCC
Confidence            33321 125678999999987777665   68999999999988877542    11 22 8899999999666555 789


Q ss_pred             cEEEEEcCCCceee-e---eeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669          380 LVKIWDVKSQANVA-K---FDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       380 ~I~iwd~~~~~~~~-~---~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      .|.++|........ .   ...-......+.++++|.++.+....   + +...|..++............ ....+.++
T Consensus       183 ~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~  261 (381)
T COG3391         183 TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVD  261 (381)
T ss_pred             eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeEC
Confidence            99999976655442 1   01112345678999999866665443   4 888888887766552222112 56778999


Q ss_pred             CCCCEEEEEeCc---EEEEEeeccCccceeEEEccC
Q 010669          452 HSGSYLAVASAD---IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       452 ~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      |+|.++.+....   +.+.|.    ........+..
T Consensus       262 p~g~~~yv~~~~~~~V~vid~----~~~~v~~~~~~  293 (381)
T COG3391         262 PAGKAAYVANSQGGTVSVIDG----ATDRVVKTGPT  293 (381)
T ss_pred             CCCCEEEEEecCCCeEEEEeC----CCCceeeeecc
Confidence            999999888554   666665    44455554443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.06  E-value=0.011  Score=55.92  Aligned_cols=245  Identities=15%  Similarity=0.154  Sum_probs=142.4

Q ss_pred             EEEeccCCCEEEEEe----------CCCcEEEEcCCCCceEEEcccCcc-------ceeEEEEeeCCCEEEEEe--CCCc
Q 010669          228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGHSK-------KVTSVKFVTEGDLFLTGS--ADKT  288 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~s~~~~~l~s~s--~dg~  288 (504)
                      .+.++|+++.+++++          ..-.|.+||..+-.....+.-..+       ....++++.|+++++...  -...
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            466789999887653          344699999998877665432211       123456777888766553  3456


Q ss_pred             EEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECC-CCeEEEEeecCCCCCCCCCeEEEEECC
Q 010669          289 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFHP  367 (504)
Q Consensus       289 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p  367 (504)
                      |.|-|+...   +.+..+..  ..+..+--.+ +.-|.+-|.||.+....+. .|+................+..-++..
T Consensus       120 VtVVDl~~~---kvv~ei~~--PGC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~  193 (342)
T PF06433_consen  120 VTVVDLAAK---KVVGEIDT--PGCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR  193 (342)
T ss_dssp             EEEEETTTT---EEEEEEEG--TSEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred             EEEEECCCC---ceeeeecC--CCEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence            788888764   44444431  1223332222 3468888899999998887 455443322111112222233445555


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcee--eeeeC----------CCCCeEEEEEcCCCcEEEEEe--------CC-c--EEE
Q 010669          368 DGLILGTGTSEALVKIWDVKSQANV--AKFDG----------HVGAVTAISFSENGYYLATAA--------HD-G--VKL  424 (504)
Q Consensus       368 dg~~l~~g~~dg~I~iwd~~~~~~~--~~~~~----------~~~~i~~l~~s~~g~~l~s~~--------~d-~--v~v  424 (504)
                      .+..++.-+.+|.|+-.|+......  ..+.-          -.+.-.-+++++....|++.-        .+ +  |.+
T Consensus       194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv  273 (342)
T PF06433_consen  194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV  273 (342)
T ss_dssp             TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred             CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence            5555555678999999888665421  12210          112344477776544444321        12 2  899


Q ss_pred             EEcCCCcceeeeecCCCCCCeeEEEECCCCC-EEEEEeC-c--EEEEEeeccCccceeEEEccCC
Q 010669          425 WDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA-D--IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       425 wd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                      ||+.+.+.+..+...   .++.+|..+.+.+ +|++.+. +  +.+||.    .+++.+.++.+.
T Consensus       274 ~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~----~tGk~~~~~~~l  331 (342)
T PF06433_consen  274 YDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDA----ATGKLVRSIEQL  331 (342)
T ss_dssp             EETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEET----TT--EEEEE---
T ss_pred             EECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeC----cCCcEEeehhcc
Confidence            999999999999873   4688999998775 6655443 3  999998    778888888764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.04  E-value=0.0011  Score=65.41  Aligned_cols=229  Identities=17%  Similarity=0.154  Sum_probs=126.6

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC----------------------------------------cceeEEe
Q 010669          267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN----------------------------------------YDCKHTL  306 (504)
Q Consensus       267 ~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~----------------------------------------~~~~~~~  306 (504)
                      .|+.+.|.++..-|++|...|.|.||.+...+.                                        +.+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            478888888877888888889988886432211                                        1122223


Q ss_pred             ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC---CCCCCCCeEEEEECC-----CC---CEEEEE
Q 010669          307 KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG---TDGRPEGYTSAAFHP-----DG---LILGTG  375 (504)
Q Consensus       307 ~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p-----dg---~~l~~g  375 (504)
                      ....++|++++.+ +=-+++.|..+|.+.|.|++....+..-....   .......++++.|..     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            3456889999987 55699999999999999999888777643221   112345678888763     44   578999


Q ss_pred             eCCCcEEEEEcC--C-Ccee----eeeeCCCCCeEEEE-EcCC---------------------CcEEEEEeCCcEEEEE
Q 010669          376 TSEALVKIWDVK--S-QANV----AKFDGHVGAVTAIS-FSEN---------------------GYYLATAAHDGVKLWD  426 (504)
Q Consensus       376 ~~dg~I~iwd~~--~-~~~~----~~~~~~~~~i~~l~-~s~~---------------------g~~l~s~~~d~v~vwd  426 (504)
                      +..|.+.+|.+-  . +.-.    .....+.++|..|. |+.+                     ..++++++...++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            999999999874  1 2111    11123556666554 3211                     1266777777799999


Q ss_pred             cCCCcceeeeecCCCCCCeeEEEEC-----CCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCC--CCCceeEEEEe
Q 010669          427 LRKLKNFRSFESSDSETPTNSVDFD-----HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLS--GTGAASFLFLF  497 (504)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~v~~i~~~-----~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~--~~~~v~~l~~~  497 (504)
                      ..+.+........  ......+.+-     ..+..|++-..+  +++|.+    ...+.+..+.-..  +...+....|.
T Consensus       242 ~~~~k~~~K~~~~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL----P~Lkei~~~~l~~~~d~~~~~~ssis  315 (395)
T PF08596_consen  242 PPKSKGAHKSFDD--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL----PSLKEIKSVSLPPPLDSRRLSSSSIS  315 (395)
T ss_dssp             TT---EEEEE-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET----TT--EEEEEE-SS---HHHHTT-EE-
T ss_pred             CCCCcccceeecc--ccccceEEEEeecccCCceEEEEEECCCcEEEEEC----CCchHhhcccCCCccccccccccEEC
Confidence            9887766554421  1233344442     355666666666  999998    6666666665431  12234555566


Q ss_pred             ecCcc
Q 010669          498 VLGQT  502 (504)
Q Consensus       498 ~~g~~  502 (504)
                      .+|.+
T Consensus       316 ~~Gdi  320 (395)
T PF08596_consen  316 RNGDI  320 (395)
T ss_dssp             TTS-E
T ss_pred             CCCCE
Confidence            66653

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.00  E-value=0.0061  Score=62.59  Aligned_cols=231  Identities=13%  Similarity=0.164  Sum_probs=130.5

Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEcccCccc-----ee-EEEEeeCCCEEEEEe---------CCCcEEEEeCCCCCCc
Q 010669          236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK-----VT-SVKFVTEGDLFLTGS---------ADKTVRVWQGSEDGNY  300 (504)
Q Consensus       236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-----v~-~l~~s~~~~~l~s~s---------~dg~i~iwd~~~~~~~  300 (504)
                      ..++.++.+|.|+-+|..+|+.+..+......     +. ...+  .+..++.++         .+|.+..+|..++.  
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~--  186 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGK--  186 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCc--
Confidence            67778888999999999999988776533221     11 1112  224455553         36788888888763  


Q ss_pred             ceeEEeccC-C-------------------cCe-EEEEEccCCCEEEEEeCCC------------------eEEEEECCC
Q 010669          301 DCKHTLKDH-T-------------------AEV-QAVTVHATNKYFVTASLDN------------------TWCFYDLSS  341 (504)
Q Consensus       301 ~~~~~~~~h-~-------------------~~v-~~l~~~p~~~~l~s~s~dg------------------~i~iwd~~~  341 (504)
                       ..-.+... .                   ..| ....+.+.+..++.++.++                  .+.-+|..+
T Consensus       187 -~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t  265 (488)
T cd00216         187 -LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT  265 (488)
T ss_pred             -eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence             22222110 0                   011 1234444567778787665                  799999999


Q ss_pred             CeEEEEeecCCCC-----CCCCCeEEEEEC-CCCC---EEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCc
Q 010669          342 GICLTQVSDAGTD-----GRPEGYTSAAFH-PDGL---ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY  412 (504)
Q Consensus       342 ~~~~~~~~~~~~~-----~~~~~v~~~~~~-pdg~---~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~  412 (504)
                      |+..-.+......     ....++ -.... -+|.   .+++++.+|.+..+|.++++.+-.....   ...+..+| + 
T Consensus       266 G~~~W~~~~~~~~~~~~~~~s~p~-~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-  339 (488)
T cd00216         266 GKVKWFYQTTPHDLWDYDGPNQPS-LADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-  339 (488)
T ss_pred             CCEEEEeeCCCCCCcccccCCCCe-EEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-
Confidence            9988776532110     000011 01111 1343   6788889999999999999988765421   11233333 2 


Q ss_pred             EEEEE------------------eCCc-EEEEEcCCCcceeeeecCCCC------CCe--eEEEECCCCCEEEEEeCc--
Q 010669          413 YLATA------------------AHDG-VKLWDLRKLKNFRSFESSDSE------TPT--NSVDFDHSGSYLAVASAD--  463 (504)
Q Consensus       413 ~l~s~------------------~~d~-v~vwd~~~~~~~~~~~~~~~~------~~v--~~i~~~~~g~~l~~~~~d--  463 (504)
                      .++.+                  ..++ |.-.|+.+++.+-........      .+.  ..+.  ..+.+|++++.+  
T Consensus       340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~  417 (488)
T cd00216         340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGY  417 (488)
T ss_pred             eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCe
Confidence            22221                  1234 888888888877666543110      111  1122  256778888877  


Q ss_pred             EEEEEeeccCccceeEEEcc
Q 010669          464 IRVYQVASVKADWNCIKTFP  483 (504)
Q Consensus       464 i~vw~~~~~~~~~~~i~~~~  483 (504)
                      ++.+|.    ++++.+-+++
T Consensus       418 l~ald~----~tG~~lW~~~  433 (488)
T cd00216         418 FRAFDA----TTGKELWKFR  433 (488)
T ss_pred             EEEEEC----CCCceeeEEE
Confidence            666665    4455554443

The alignment model contains an 8-bladed beta-propeller.

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=5.2e-06  Score=72.01  Aligned_cols=56  Identities=27%  Similarity=0.422  Sum_probs=49.2

Q ss_pred             CccccCCCCCCC----ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccccCCC
Q 010669            1 MNCSISGEVPEE----PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGK   57 (504)
Q Consensus         1 ~~c~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~   57 (504)
                      ++|+++-....+    .|+.| ||+||.+.|.||+|..-+.||+||++|+..|||++|.+.
T Consensus       222 yiCpvtrd~LtNt~~ca~Lr~-sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~LqrGG  281 (303)
T KOG3039|consen  222 YICPVTRDTLTNTTPCAVLRP-SGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQRGG  281 (303)
T ss_pred             eecccchhhhcCccceEEecc-CCcEeeHHHHHHhccccccccCCCCcCcccceEeeeccc
Confidence            479988777555    47785 999999999999999999999999999999999998743

>TIGR00599 rad18 DNA repair protein rad18

Probab=97.96  E-value=5e-06  Score=80.20  Aligned_cols=49  Identities=20%  Similarity=0.386  Sum_probs=44.6

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCcc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDI   50 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~   50 (504)
                      +.|+||.+.+.+||+++ |||+||+.||..|+...+.||++++++....|
T Consensus        27 l~C~IC~d~~~~Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~L   75 (397)
T TIGR00599        27 LRCHICKDFFDVPVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQESKL   75 (397)
T ss_pred             cCCCcCchhhhCccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccccC
Confidence            57999999999999996 99999999999999998899999998875544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.96  E-value=0.00064  Score=67.68  Aligned_cols=186  Identities=14%  Similarity=0.122  Sum_probs=114.2

Q ss_pred             CCCeEEEEeccCCCEEEEE---eCC-CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEE--eCC
Q 010669          223 KPGIVSLDIHYSKDVIATG---GVD-TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVW--QGS  295 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg---~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iw--d~~  295 (504)
                      ...+..-+|+|++..++..   ... ..++++++.+++....+. ..+.-..-.|+|||+.|+ +...||...||  |+.
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            4567777899998865443   222 468999998876544443 223344568999998755 55567766555  554


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      ...    ...+..-.+.-..=.|+|+|++++-.+. .|  .|.++|.+.+........    .  ..-..-.|+|||+++
T Consensus       271 ~~~----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~----~--~~~~~p~~SpdG~~i  340 (425)
T COG0823         271 GKN----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS----G--GGNSNPVWSPDGDKI  340 (425)
T ss_pred             CCc----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc----C--CCCcCccCCCCCCEE
Confidence            432    2223333333346678999998877655 44  477778777655332221    1  112277899999998


Q ss_pred             EEEeCC-Cc--EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC
Q 010669          373 GTGTSE-AL--VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD  420 (504)
Q Consensus       373 ~~g~~d-g~--I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d  420 (504)
                      +..+.. |.  |.+.|+.++..+..+. +......-.|.+||..+...+..
T Consensus       341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         341 VFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             EEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence            887643 44  6667776665443333 33445566788898877665543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.95  E-value=0.011  Score=58.16  Aligned_cols=232  Identities=17%  Similarity=0.168  Sum_probs=125.3

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE-ccc-------C---------ccceeEEEEeeCCCEEEEEeC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT-LSG-------H---------SKKVTSVKFVTEGDLFLTGSA  285 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~-------h---------~~~v~~l~~s~~~~~l~s~s~  285 (504)
                      ...+....|||+|+.++... ++.|++++..++...+. ..+       -         -+.-..+.||||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            45678899999999998876 57899999877744332 122       0         112356889999998876643


Q ss_pred             C-Cc-----------------------------------EEEEeCCCCCCcceeEEe---ccCCcCeEEEEEccCCCEEE
Q 010669          286 D-KT-----------------------------------VRVWQGSEDGNYDCKHTL---KDHTAEVQAVTVHATNKYFV  326 (504)
Q Consensus       286 d-g~-----------------------------------i~iwd~~~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~  326 (504)
                      | ..                                   +.|+|+.++.. ..+...   ..-...+..+.|.++++.|+
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~-~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKT-TELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCC-CEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcE-EEeeeccccCCCccCcccceecCCCcEEE
Confidence            2 22                                   22333433211 011111   12234577888988888333


Q ss_pred             E--EeCCC---eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEEC-CCC-CEEEEEeCCCcEE--EEEcCCCceeeeeeC
Q 010669          327 T--ASLDN---TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH-PDG-LILGTGTSEALVK--IWDVKSQANVAKFDG  397 (504)
Q Consensus       327 s--~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-pdg-~~l~~g~~dg~I~--iwd~~~~~~~~~~~~  397 (504)
                      .  .+.+.   .+.++|..++......... ..+.-.......|. +++ .++.....+|.-+  +++...+. ...+..
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~  277 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTS  277 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eecccc
Confidence            3  33333   4667788776554444321 11222233455554 544 4555555777544  45554444 334443


Q ss_pred             CCCCeEE-EEEcCCCcEE-EEEeCC----c-EEEEEcCCCcceeeeecCCCCCCe-eEEEECCCCCEEEEEe
Q 010669          398 HVGAVTA-ISFSENGYYL-ATAAHD----G-VKLWDLRKLKNFRSFESSDSETPT-NSVDFDHSGSYLAVAS  461 (504)
Q Consensus       398 ~~~~i~~-l~~s~~g~~l-~s~~~d----~-v~vwd~~~~~~~~~~~~~~~~~~v-~~i~~~~~g~~l~~~~  461 (504)
                      ..-.|+. +.|++++..| +++..+    . |+.-++..+..+..+...   ... ..+.|+|+|++++...
T Consensus       278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~---~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE---DGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT---SSTTEEEEE-TTSSEEEEEE
T ss_pred             CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC---CCCceEEEECCCCCEEEEEE
Confidence            4456755 6778876554 455442    2 666666623334444433   222 5899999999988654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.93  E-value=0.0059  Score=58.00  Aligned_cols=221  Identities=13%  Similarity=0.124  Sum_probs=130.1

Q ss_pred             EeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec-
Q 010669          230 DIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-  307 (504)
Q Consensus       230 ~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-  307 (504)
                      .|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++.....+..|+++..  -+.+++.+.+.......... 
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence            3666666 5555566788888988766432 222 2233455554444545555533  35667765442211111111 


Q ss_pred             cC-CcCeEEEEEccCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          308 DH-TAEVQAVTVHATNKYFVTASL-----------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       308 ~h-~~~v~~l~~~p~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      +. ....+.+...|+|.+.++...           -|.++.+|. .+.....+.     .+-..-+.++||||++.|...
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-----~~~~~~NGla~SpDg~tly~a  180 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-----DDLTIPNGLAFSPDGKTLYVA  180 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-----CcEEecCceEECCCCCEEEEE
Confidence            11 134567888999887665443           133444443 344343332     222345789999999877776


Q ss_pred             eC-CCcEEEEEcCC--C----ce-eeeeeCCCCCeEEEEEcCCCcEEEEEeCC--cEEEEEcCCCcceeeeecCCCCCCe
Q 010669          376 TS-EALVKIWDVKS--Q----AN-VAKFDGHVGAVTAISFSENGYYLATAAHD--GVKLWDLRKLKNFRSFESSDSETPT  445 (504)
Q Consensus       376 ~~-dg~I~iwd~~~--~----~~-~~~~~~~~~~i~~l~~s~~g~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~~v  445 (504)
                      .. .+.|.-|++..  +    +. ...+..+.+..-.++...+|.+.+++..+  .|.+|+.. ++.+..+..+  ...+
T Consensus       181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--~~~~  257 (307)
T COG3386         181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--VKRP  257 (307)
T ss_pred             eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--CCCC
Confidence            55 47888887752  1    11 22223345677788888899888655555  39999988 8888888876  3567


Q ss_pred             eEEEEC-CCCCEEEEEeCc
Q 010669          446 NSVDFD-HSGSYLAVASAD  463 (504)
Q Consensus       446 ~~i~~~-~~g~~l~~~~~d  463 (504)
                      ++++|- ++.+.|++.+..
T Consensus       258 t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         258 TNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             ccceEeCCCcCEEEEEecC
Confidence            777774 345555554433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.90  E-value=0.00084  Score=66.83  Aligned_cols=195  Identities=12%  Similarity=0.125  Sum_probs=118.0

Q ss_pred             CceEEEcccCccceeEEEEeeCCCEEEEE---eCC-CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEE-e
Q 010669          255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTG---SAD-KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA-S  329 (504)
Q Consensus       255 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~---s~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~-s  329 (504)
                      +.....+......+..-+|+|++..++-.   ... ..+.++++.++.. ..+..+.++   -..-.|+|||+.|+.+ .
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-~~i~~~~g~---~~~P~fspDG~~l~f~~~  257 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-PVILNFNGN---NGAPAFSPDGSKLAFSSS  257 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-ceeeccCCc---cCCccCCCCCCEEEEEEC
Confidence            44444444445567777889888764433   222 3588999988643 233333333   4466899999876655 4


Q ss_pred             CCCe--EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeCCCCCeEE
Q 010669          330 LDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKFDGHVGAVTA  404 (504)
Q Consensus       330 ~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg--~I~iwd~~~~~~~~~~~~~~~~i~~  404 (504)
                      .||.  |.++|+.++.... +..     ....-..=.|+|||+.++..+. .|  .|.++|...+.. ..+....+.-..
T Consensus       258 rdg~~~iy~~dl~~~~~~~-Lt~-----~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~  330 (425)
T COG0823         258 RDGSPDIYLMDLDGKNLPR-LTN-----GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSN  330 (425)
T ss_pred             CCCCccEEEEcCCCCccee-ccc-----CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcC
Confidence            5664  7777888777443 321     1112235679999998877654 44  466666655443 333323233337


Q ss_pred             EEEcCCCcEEEEEeCC--c--EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          405 ISFSENGYYLATAAHD--G--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       405 l~~s~~g~~l~s~~~d--~--v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      -.|+|||.+|+..+..  .  |.+.|+.++...+.+..   ......-.|.++|..+...+..
T Consensus       331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEeccC
Confidence            7899999999887742  2  77777776654444433   2334456788888877766544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.84  E-value=0.0087  Score=56.84  Aligned_cols=211  Identities=11%  Similarity=0.064  Sum_probs=121.1

Q ss_pred             EEeeCCC-EEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 010669          272 KFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD  350 (504)
Q Consensus       272 ~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  350 (504)
                      .|.++.. ++.+--..+.|.-|+..++    ....+. +.+.+.++..-..+..|+++..  .+.+++.+++..+..+..
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g----~~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETG----KKRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcC----ceEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence            3445444 3444455677777877653    222222 2233444444334445555533  456677766655333332


Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEeC-----------CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeC
Q 010669          351 AGTDGRPEGYTSAAFHPDGLILGTGTS-----------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH  419 (504)
Q Consensus       351 ~~~~~~~~~v~~~~~~pdg~~l~~g~~-----------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~  419 (504)
                      ..........+.+...|+|.+.++...           -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+..
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence            222233356778899999987765433           133444443 45556556655666788999999998888876


Q ss_pred             C-c-EEEEEcCC--Ccc---eeeeecCCCCCCeeEEEECCCCCEEEEEeC---cEEEEEeeccCccceeEEEccCCCCCC
Q 010669          420 D-G-VKLWDLRK--LKN---FRSFESSDSETPTNSVDFDHSGSYLAVASA---DIRVYQVASVKADWNCIKTFPDLSGTG  489 (504)
Q Consensus       420 d-~-v~vwd~~~--~~~---~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~---di~vw~~~~~~~~~~~i~~~~~h~~~~  489 (504)
                      . + |.-|++..  +..   ...+......+..-.++.+.+|.+.+++..   .|.+|+-     .++.+..+...  ..
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p-----dG~l~~~i~lP--~~  255 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP-----DGKLLGEIKLP--VK  255 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC-----CCcEEEEEECC--CC
Confidence            5 3 77777652  211   111222112456677888899988854443   3777874     47777777654  34


Q ss_pred             ceeEEEEe
Q 010669          490 AASFLFLF  497 (504)
Q Consensus       490 ~v~~l~~~  497 (504)
                      .+++++|-
T Consensus       256 ~~t~~~Fg  263 (307)
T COG3386         256 RPTNPAFG  263 (307)
T ss_pred             CCccceEe
Confidence            56666554

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.76  E-value=0.0063  Score=63.31  Aligned_cols=237  Identities=14%  Similarity=0.228  Sum_probs=128.4

Q ss_pred             ccCCCEEEEEeCCC------cEEEEcCCCCceEEEccc-CccceeEEEEeeCCCEEEEEeCC------CcEEEEeCCCCC
Q 010669          232 HYSKDVIATGGVDT------NAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSAD------KTVRVWQGSEDG  298 (504)
Q Consensus       232 s~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~s~d------g~i~iwd~~~~~  298 (504)
                      +..+.+++.||.++      .+..||..++.....-.- ....-.+++.. ++.+.++||.|      .++-.||...+ 
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~-  359 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN-  359 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC-
Confidence            33466778888774      577888877643322211 22223344443 56788889988      35678888774 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCe-----EEEEECCCCeEEEEeecCCCCCCCCCeEEE-EECCCCCEE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT-----WCFYDLSSGICLTQVSDAGTDGRPEGYTSA-AFHPDGLIL  372 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~~pdg~~l  372 (504)
                      .|.....+...........+  +|...++|+.||.     +..||..+.+-...-.      ........ ...-+|.+.
T Consensus       360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~------m~~~r~~~gv~~~~g~iY  431 (571)
T KOG4441|consen  360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP------MLTRRSGHGVAVLGGKLY  431 (571)
T ss_pred             ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC------CCcceeeeEEEEECCEEE
Confidence            35444444332222222222  6888999999874     7778877664322211      00112222 222368888


Q ss_pred             EEEeCCC------cEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc------EEEEEcCCCcceeeeec
Q 010669          373 GTGTSEA------LVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHDG------VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       373 ~~g~~dg------~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~------v~vwd~~~~~~~~~~~~  438 (504)
                      ++|+.++      ++..||..+++  .+..+..-........+  ++.+.+.|+.++      |..||..+.+-...-..
T Consensus       432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m  509 (571)
T KOG4441|consen  432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM  509 (571)
T ss_pred             EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence            8888654      56788887653  22222222222222333  778888887664      78899887654332111


Q ss_pred             CCCCCCeeEEEECCCCCEEEEEeCc-------EEEEEeeccCccceeEEEccC
Q 010669          439 SDSETPTNSVDFDHSGSYLAVASAD-------IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       439 ~~~~~~v~~i~~~~~g~~l~~~~~d-------i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      ......+..+.+  ++...++|+.|       +..||-  ...+|........
T Consensus       510 ~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp--~~d~W~~~~~~~~  558 (571)
T KOG4441|consen  510 TSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP--ETDTWTEVTEPES  558 (571)
T ss_pred             ccccccccEEEE--CCEEEEEecccCccccceeEEcCC--CCCceeeCCCccc
Confidence            111122222222  45666667665       566654  3467887776433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.75  E-value=0.0016  Score=68.77  Aligned_cols=224  Identities=13%  Similarity=0.163  Sum_probs=131.1

Q ss_pred             CEEEEE-eCCCcEEEEcCCCCceEEEcccCccc-eeEEEEee-----CCCEEEEEeCCCcEEEEeCCCCCCcceeEE-e-
Q 010669          236 DVIATG-GVDTNAVLFDRPSGQIVTTLSGHSKK-VTSVKFVT-----EGDLFLTGSADKTVRVWQGSEDGNYDCKHT-L-  306 (504)
Q Consensus       236 ~~l~sg-~~dg~i~vwd~~~~~~~~~~~~h~~~-v~~l~~s~-----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~-  306 (504)
                      ++|+.. .....|+-.|++.|+.+..++.|... |..++=..     +....+.|-.++.+..||++-.++ .++.. . 
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k  572 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSK  572 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeecccc
Confidence            444433 35577999999999999999877654 55553221     133467788888999999987542 22211 1 


Q ss_pred             -ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 010669          307 -KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD  385 (504)
Q Consensus       307 -~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd  385 (504)
                       ........|++-..+| +||+|+.+|.|++||-- |+.-++.    ..+-..+|..++.+.||+++++.+. ..|.+++
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~----lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~  645 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTA----LPGLGDPIIGIDVTADGKWILATCK-TYLLLID  645 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhc----CCCCCCCeeEEEecCCCcEEEEeec-ceEEEEE
Confidence             1233456677666444 79999999999999943 3222222    2244579999999999999877654 5566776


Q ss_pred             cC--CCc----------------e---eeeeeC-C--------CC--CeEEEEEcC----CCcEEEEEeCCcEEEEEcCC
Q 010669          386 VK--SQA----------------N---VAKFDG-H--------VG--AVTAISFSE----NGYYLATAAHDGVKLWDLRK  429 (504)
Q Consensus       386 ~~--~~~----------------~---~~~~~~-~--------~~--~i~~l~~s~----~g~~l~s~~~d~v~vwd~~~  429 (504)
                      ..  .++                +   ...+.. |        ..  ..+...|+.    ....|++++..-+.+|++++
T Consensus       646 t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~k  725 (794)
T PF08553_consen  646 TLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKK  725 (794)
T ss_pred             EeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHH
Confidence            52  110                0   011111 1        11  223445542    23556665544499999874


Q ss_pred             Cc----ceeeeecCCCCCCee--EEEECCCCCEEEEEeCcEEEEEe
Q 010669          430 LK----NFRSFESSDSETPTN--SVDFDHSGSYLAVASADIRVYQV  469 (504)
Q Consensus       430 ~~----~~~~~~~~~~~~~v~--~i~~~~~g~~l~~~~~di~vw~~  469 (504)
                      -.    ....+...  ...|.  ...|..+.+++++--+||.+-..
T Consensus       726 V~~g~~~~Y~ikry--~~~V~~dnF~fg~d~~vival~~dV~m~~~  769 (794)
T PF08553_consen  726 VKRGKKDPYQIKRY--DENVVADNFKFGSDKNVIVALPNDVNMVKK  769 (794)
T ss_pred             HhCCCCCceEEEEc--CCceEEccceeCCCCcEEEEccchhhhhhh
Confidence            22    22223222  23343  35566666666666666555543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.68  E-value=0.028  Score=57.81  Aligned_cols=199  Identities=13%  Similarity=0.144  Sum_probs=117.2

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCcc------cee--EEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK------KVT--SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL  306 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~------~v~--~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  306 (504)
                      +..++.++.++.|+-+|..+|+.+..+.....      .+.  .+... ++..++.++.+|.|..+|..++   +.+-.+
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG---~~~W~~  136 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETG---KQVWKF  136 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCC---CEeeee
Confidence            45667777889999999999988776653322      010  11111 2267888889999999999886   333333


Q ss_pred             ccCCcC--eEEEEEcc--CCCEEEEEe---------CCCeEEEEECCCCeEEEEeecCCCCC--C--------------C
Q 010669          307 KDHTAE--VQAVTVHA--TNKYFVTAS---------LDNTWCFYDLSSGICLTQVSDAGTDG--R--------------P  357 (504)
Q Consensus       307 ~~h~~~--v~~l~~~p--~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~--~--------------~  357 (504)
                      ......  -..+.-+|  .+..++.++         .+|.+.-+|..+|+............  .              .
T Consensus       137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            221110  00111111  124455553         36889999999999887765321100  0              0


Q ss_pred             CCeEEEEECCCCCEEEEEeCCC------------------cEEEEEcCCCceeeeeeC--CCC----CeEEEEEc----C
Q 010669          358 EGYTSAAFHPDGLILGTGTSEA------------------LVKIWDVKSQANVAKFDG--HVG----AVTAISFS----E  409 (504)
Q Consensus       358 ~~v~~~~~~pdg~~l~~g~~dg------------------~I~iwd~~~~~~~~~~~~--~~~----~i~~l~~s----~  409 (504)
                      ..-...++.+.+..+++++.++                  .|.-+|..+++.+-.+..  |..    ......+.    -
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~  296 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK  296 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence            0011345555567777777665                  699999999998776642  210    00001111    1


Q ss_pred             CCc---EEEEEeCCc-EEEEEcCCCcceeeee
Q 010669          410 NGY---YLATAAHDG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       410 ~g~---~l~s~~~d~-v~vwd~~~~~~~~~~~  437 (504)
                      +|.   .++.++.++ +..+|.++++.+....
T Consensus       297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             CCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence            343   577777777 9999999999877654

The alignment model contains an 8-bladed beta-propeller.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00024  Score=70.64  Aligned_cols=94  Identities=19%  Similarity=0.179  Sum_probs=75.7

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCcccee-EEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVT-SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ...|.-+.|+|.-+++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||++|+.|-.||+|++.|+..+..  
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~--   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR--   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc--
Confidence            3468899999999999999999999999887 777888887777777 999999999999999999999999998642  


Q ss_pred             eeEEeccCCcCeEEEEEc
Q 010669          302 CKHTLKDHTAEVQAVTVH  319 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~  319 (504)
                      .......-...|.++.|.
T Consensus        97 l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWD  114 (665)
T ss_pred             eeccccccccchheeecc
Confidence            111112234556677675

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=97.64  E-value=9.9e-05  Score=49.30  Aligned_cols=44  Identities=32%  Similarity=0.577  Sum_probs=39.6

Q ss_pred             ccccCCCCCCCceEeCCCCee-eeHHHHHHHHHhcCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKNSGLL-FEKRLIERHILDYGKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~   46 (504)
                      .|.|..+.+.++++.| +||. |...++.++++...+||+.+++++
T Consensus         4 ~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    4 ECPICFENPRDVVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             B-TTTSSSBSSEEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             CCccCCccCCceEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            5999999999999997 9999 999999999998899999998865

...

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=3.6e-05  Score=74.76  Aligned_cols=54  Identities=28%  Similarity=0.485  Sum_probs=49.3

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhc-----CCCCCCCCCCCCCccccccC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY-----GKCPVTGEPLTMDDIVPIKT   55 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~~~   55 (504)
                      |.|+||.+.|.-|++|- |||+||=.||.+|+...     +.||+|+..+++-||.||--
T Consensus       187 ~~CPICL~~~~~p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~  245 (513)
T KOG2164|consen  187 MQCPICLEPPSVPVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI  245 (513)
T ss_pred             CcCCcccCCCCcccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence            57999999999999995 99999999999999865     57999999999999988854

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.63  E-value=0.022  Score=55.19  Aligned_cols=173  Identities=18%  Similarity=0.196  Sum_probs=105.5

Q ss_pred             cEEEEcCCCCceEEEccc-CccceeEEEEee---C----CCEEEEEeC----------CCcEEEEeCCCC----CCccee
Q 010669          246 NAVLFDRPSGQIVTTLSG-HSKKVTSVKFVT---E----GDLFLTGSA----------DKTVRVWQGSED----GNYDCK  303 (504)
Q Consensus       246 ~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~---~----~~~l~s~s~----------dg~i~iwd~~~~----~~~~~~  303 (504)
                      .|++.|..+.+.+.++.- ....+++++...   +    ..+|+.|..          .|.|.++++...    .....+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            578888877777666542 233455554432   1    456776642          288999999873    122333


Q ss_pred             EEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 010669          304 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK  382 (504)
Q Consensus       304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~  382 (504)
                      ... ...++|++++-. .+. ++.+ .++.|.+|++...+ ....-..    .....+.++...  ++++++|.....+.
T Consensus        83 ~~~-~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~----~~~~~i~sl~~~--~~~I~vgD~~~sv~  152 (321)
T PF03178_consen   83 HST-EVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFY----DSPFYITSLSVF--KNYILVGDAMKSVS  152 (321)
T ss_dssp             EEE-EESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-----BSSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred             EEE-eecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhhee----cceEEEEEEecc--ccEEEEEEcccCEE
Confidence            332 346889999876 444 4443 35799999998887 4433321    112245555554  56999999888888


Q ss_pred             EEEcCC-Cceeeeee--CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC
Q 010669          383 IWDVKS-QANVAKFD--GHVGAVTAISFSENGYYLATAAHDG-VKLWDLR  428 (504)
Q Consensus       383 iwd~~~-~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~  428 (504)
                      ++..+. +..+..+.  .....++++.|-+++..++.+..++ +.++...
T Consensus       153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            886543 22233322  2344688999986667888888888 8888775

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=97.61  E-value=6.7e-05  Score=47.72  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=28.6

Q ss_pred             cccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC
Q 010669            3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG   36 (504)
Q Consensus         3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   36 (504)
                      |+|..+++++||..+ .||+|.+++|++|.++.+
T Consensus         1 CpiC~~~~~~Pv~l~-CGH~FC~~Cl~~~~~~~~   33 (42)
T PF15227_consen    1 CPICLDLFKDPVSLP-CGHSFCRSCLERLWKEPS   33 (42)
T ss_dssp             ETTTTSB-SSEEE-S-SSSEEEHHHHHHHHCCSS
T ss_pred             CCccchhhCCccccC-CcCHHHHHHHHHHHHccC
Confidence            899999999999995 999999999999998663

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.59  E-value=8.1e-05  Score=47.31  Aligned_cols=31  Identities=26%  Similarity=0.396  Sum_probs=21.7

Q ss_pred             cccCCCCCCC----ceEeCCCCeeeeHHHHHHHHHhc
Q 010669            3 CSISGEVPEE----PVVSKNSGLLFEKRLIERHILDY   35 (504)
Q Consensus         3 c~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   35 (504)
                      |+|+-| +.+    |++-+ +||+|.|.+|++.++.+
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence            899999 777    99997 99999999999999965

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.57  E-value=0.041  Score=52.11  Aligned_cols=207  Identities=17%  Similarity=0.141  Sum_probs=123.4

Q ss_pred             EEEeccCCCEEEEEeC--CCcEEEEcCCCCceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          228 SLDIHYSKDVIATGGV--DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      .+.++.||+++++...  -..|.|.|+..++.+..+.-. + +..+  -| .++-+.+-+.||.+.-..+...+......
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEE--EecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence            3567888887766533  346888999988888777522 1 2222  23 23458888999999999888655432111


Q ss_pred             --EeccCCcCeE-EEEEccCCCEEEEEeCCCeEEEEECCCCeEEEE--eecCC-----CCCCCCCeEEEEECCCCCEEEE
Q 010669          305 --TLKDHTAEVQ-AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ--VSDAG-----TDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       305 --~~~~h~~~v~-~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~-----~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                        .|.....++. .-.+...+..++..+.+|.|+-.|+........  +....     ..-.++...-+++|+..+.|++
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence              1111122222 223344555666688999999999876653222  11100     1112344566888885554444


Q ss_pred             Ee---CCC-------cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCc-EEEEEe-CCc-EEEEEcCCCcceeeeecC
Q 010669          375 GT---SEA-------LVKIWDVKSQANVAKFDGHVGAVTAISFSENGY-YLATAA-HDG-VKLWDLRKLKNFRSFESS  439 (504)
Q Consensus       375 g~---~dg-------~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~~-~d~-v~vwd~~~~~~~~~~~~~  439 (504)
                      --   .+|       .|.+||+.+++.+.++.. ..++.+|..+.+.. +|++.+ .++ +.+||..+++.++++...
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            21   111       488899999999998873 24688999998765 665544 456 999999999999988764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.55  E-value=0.047  Score=54.59  Aligned_cols=175  Identities=13%  Similarity=0.102  Sum_probs=90.7

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce-------EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe-CC
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-------VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ-GS  295 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-------~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd-~~  295 (504)
                      +.|.++.|+.+.+++ +-..||.+++||+. |+.       +....-....+....+..+|-.+++  .++.+.+.+ ..
T Consensus        81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~  156 (410)
T PF04841_consen   81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNID  156 (410)
T ss_pred             CCEEEEEECCCCeEE-EEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCcc
Confidence            689999998865544 55689999999986 333       1111111122222333334533333  334443332 22


Q ss_pred             CCCCcceeEEecc-----CCc-CeEE-EEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669          296 EDGNYDCKHTLKD-----HTA-EVQA-VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       296 ~~~~~~~~~~~~~-----h~~-~v~~-l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd  368 (504)
                      ..........+..     |.. .... ..++.+....+....++.+.+.+-...+.   +      ...+++..+++||+
T Consensus       157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i------~~~~~i~~iavSpn  227 (410)
T PF04841_consen  157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I------DSDGPIIKIAVSPN  227 (410)
T ss_pred             ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c------cCCCCeEEEEECCC
Confidence            1100000001110     000 0000 22333444444444555555443222111   1      12357999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeeCC-CCCeEEEEEcCCC
Q 010669          369 GLILGTGTSEALVKIWDVKSQANVAKFDGH-VGAVTAISFSENG  411 (504)
Q Consensus       369 g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~g  411 (504)
                      |+++|.-..+|.+.+.+..-.+....+... ......+.|+-+.
T Consensus       228 g~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  228 GKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            999999999999999887655666666533 3456677776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.55  E-value=0.081  Score=50.04  Aligned_cols=262  Identities=9%  Similarity=0.084  Sum_probs=123.6

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc--C---ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG--H---SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h---~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+..|.|..+..-+++|. .|.|. -....|+.-.....  .   .-...++.|.. ...+++ +..| +.+...+.+
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~-~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~iv-G~~g-~ll~T~DgG   90 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGA-YGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIV-GEPG-LLLHTTDGG   90 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEET-TTEEE-EESSTTSS-EE-----S-----EEEEEEEET-TEEEEE-EETT-EEEEESSTT
T ss_pred             CCceEEEEEecCCEEEEEec-CCEEE-EECCCCccccccccCCCccceeeEEEEEecC-CceEEE-cCCc-eEEEecCCC
Confidence            45789999996566666654 55442 22233333222211  1   12356777753 334444 4444 334444455


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                      ..+..+..-..-.+....+....++..++ ++..|.|+. ..+.|+.-..+..    .....+..+.-++||.+++++..
T Consensus        91 ~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~  164 (302)
T PF14870_consen   91 KTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSR  164 (302)
T ss_dssp             SS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETT
T ss_pred             CCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECc
Confidence            55554432111223334444444443333 344455433 2334444333322    22356888999999999999877


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEc-CCCcceee--eecCCCCCCeeEEEECCC
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL-RKLKNFRS--FESSDSETPTNSVDFDHS  453 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~-~~~~~~~~--~~~~~~~~~v~~i~~~~~  453 (504)
                      .....-||--...-...-......|..|.|+|++.+.+.+ .++ |++=+. ........  .........+..++|.++
T Consensus       165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~  243 (302)
T PF14870_consen  165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP  243 (302)
T ss_dssp             SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred             ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence            6666778754321111112245689999999998876655 555 777662 22222111  111112345889999999


Q ss_pred             CCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          454 GSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       454 g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      +...++|+... +|.-..+.++|+.......-  .+.+..+.|...
T Consensus       244 ~~~wa~gg~G~-l~~S~DgGktW~~~~~~~~~--~~n~~~i~f~~~  286 (302)
T PF14870_consen  244 NEIWAVGGSGT-LLVSTDGGKTWQKDRVGENV--PSNLYRIVFVNP  286 (302)
T ss_dssp             S-EEEEESTT--EEEESSTTSS-EE-GGGTTS--SS---EEEEEET
T ss_pred             CCEEEEeCCcc-EEEeCCCCccceECccccCC--CCceEEEEEcCC
Confidence            88888777763 33334445788877765544  567888888765

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.0042  Score=60.88  Aligned_cols=146  Identities=13%  Similarity=0.157  Sum_probs=97.1

Q ss_pred             CCCE-EEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCC-------EEEEEeCCCeEEEEECCCCeE--E
Q 010669          276 EGDL-FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-------YFVTASLDNTWCFYDLSSGIC--L  345 (504)
Q Consensus       276 ~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-------~l~s~s~dg~i~iwd~~~~~~--~  345 (504)
                      +.++ |.++..-..++-.|++.+   +.+....-|.. |.-+.+.|+.+       .-+.|-.|..|.-||.+-...  +
T Consensus       344 dsnlil~~~~~~~~l~klDIE~G---KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERG---KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccc---eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence            4444 344555566777788776   56666666655 77777877653       234566688899999874322  1


Q ss_pred             EEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc-eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEE
Q 010669          346 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDGVKL  424 (504)
Q Consensus       346 ~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~v  424 (504)
                      ...... .-.......|++-..+| ++++|+.+|.|++||- .+. ...-+.+-..+|..|..+.+|.+|+..+..-+.+
T Consensus       420 ~~~q~k-qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlL  496 (644)
T KOG2395|consen  420 AVVQSK-QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLL  496 (644)
T ss_pred             eeeecc-ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEE
Confidence            111111 11223446677766666 6889999999999997 443 3345677788999999999999998887666666


Q ss_pred             EEcC
Q 010669          425 WDLR  428 (504)
Q Consensus       425 wd~~  428 (504)
                      .++.
T Consensus       497 i~t~  500 (644)
T KOG2395|consen  497 IDTL  500 (644)
T ss_pred             EEEe
Confidence            6654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00054  Score=68.22  Aligned_cols=93  Identities=22%  Similarity=0.225  Sum_probs=78.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeE-EEEEcCCCcEEEEEeCCc-EEEEEcCCCcceee
Q 010669          358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVT-AISFSENGYYLATAAHDG-VKLWDLRKLKNFRS  435 (504)
Q Consensus       358 ~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~-~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~  435 (504)
                      ..+.-+.|+|.-.++|.+..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.|+.|-.|| |++.|..++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            468889999999999999999999999887 777888886777777 999999999999999999 99999999988777


Q ss_pred             eecCCCCCCeeEEEECC
Q 010669          436 FESSDSETPTNSVDFDH  452 (504)
Q Consensus       436 ~~~~~~~~~v~~i~~~~  452 (504)
                      ..... ...|.++.|++
T Consensus       100 ~~~s~-e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSV-ETDISKGIWDR  115 (665)
T ss_pred             ccccc-ccchheeeccc
Confidence            43322 45778888863

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.53  E-value=0.016  Score=56.19  Aligned_cols=144  Identities=14%  Similarity=0.173  Sum_probs=90.5

Q ss_pred             CCEEEEEeC----------CCcEEEEcCCCC----ceEEEc--ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          235 KDVIATGGV----------DTNAVLFDRPSG----QIVTTL--SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       235 ~~~l~sg~~----------dg~i~vwd~~~~----~~~~~~--~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..++++|..          .|.|.+|++...    ..+..+  ....++|++++-. ++. |+.+. ++.|.+|++....
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence            457777753          288999998874    122222  2356889988765 444 44443 4789999998854


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                      .+.....+.. ...+.++...  +++++.|+....+.++..+. +..+..+..   +.....++++.|-++++.++++..
T Consensus       119 ~l~~~~~~~~-~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~~~i~~D~  192 (321)
T PF03178_consen  119 TLLKKAFYDS-PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR---DYQPRWVTAAEFLVDEDTIIVGDK  192 (321)
T ss_dssp             SEEEEEEE-B-SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE---ESS-BEEEEEEEE-SSSEEEEEET
T ss_pred             cchhhheecc-eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe---cCCCccEEEEEEecCCcEEEEEcC
Confidence            2233333322 2356666655  67999999888888775443 332333331   123456889999877779999999


Q ss_pred             CCcEEEEEcC
Q 010669          378 EALVKIWDVK  387 (504)
Q Consensus       378 dg~I~iwd~~  387 (504)
                      +|.|.++...
T Consensus       193 ~gnl~~l~~~  202 (321)
T PF03178_consen  193 DGNLFVLRYN  202 (321)
T ss_dssp             TSEEEEEEE-
T ss_pred             CCeEEEEEEC
Confidence            9999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.48  E-value=0.11  Score=50.16  Aligned_cols=221  Identities=14%  Similarity=0.055  Sum_probs=108.7

Q ss_pred             EeccCCCEEEEEe-CCC--cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe
Q 010669          230 DIHYSKDVIATGG-VDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL  306 (504)
Q Consensus       230 ~~s~~~~~l~sg~-~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  306 (504)
                      +|.++|+.|+.++ .||  .+++.|+.+++..+--.+.........++++++.++-...+..|+-.|+.+.. ...+.. 
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-~~~vy~-  119 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-ERVVYE-  119 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-EEEEEE-
Confidence            5678887555444 454  46677888887655444322333456677888877655556688888888752 123333 


Q ss_pred             ccCCcCeEEEEEc--cCCCEEEEEe----------------------CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669          307 KDHTAEVQAVTVH--ATNKYFVTAS----------------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       307 ~~h~~~v~~l~~~--p~~~~l~s~s----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  362 (504)
                       .....+-...|.  .++..++-.-                      -...|...|+.+|+....+..      ...+..
T Consensus       120 -~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~------~~wlgH  192 (386)
T PF14583_consen  120 -VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED------TDWLGH  192 (386)
T ss_dssp             ---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE------SS-EEE
T ss_pred             -CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec------CccccC
Confidence             334444344553  3455443321                      123466678888876666542      256788


Q ss_pred             EEECC-CCCEEEEEeCC---C-cEEEEEcCC-CceeeeeeCC--CCCeEEEEEcCCCcEEEEEeC-----Cc-EEEEEcC
Q 010669          363 AAFHP-DGLILGTGTSE---A-LVKIWDVKS-QANVAKFDGH--VGAVTAISFSENGYYLATAAH-----DG-VKLWDLR  428 (504)
Q Consensus       363 ~~~~p-dg~~l~~g~~d---g-~I~iwd~~~-~~~~~~~~~~--~~~i~~l~~s~~g~~l~s~~~-----d~-v~vwd~~  428 (504)
                      +.|+| |..+|+.|.+.   . .-|||-+++ +.....+..+  ...+..=-|.+||..|.--+.     +. |.-+|+.
T Consensus       193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~  272 (386)
T PF14583_consen  193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD  272 (386)
T ss_dssp             EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred             cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence            99999 66666666542   1 125565543 3333333222  224555679999986654321     23 7778888


Q ss_pred             CCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       429 ~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      ++.........    ....+--++||++++.=|.|
T Consensus       273 t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  273 TGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             T--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred             CCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence            87654333322    34456667899888754443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.46  E-value=0.013  Score=45.77  Aligned_cols=100  Identities=29%  Similarity=0.360  Sum_probs=67.8

Q ss_pred             eeEEEEee-CC---CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q 010669          268 VTSVKFVT-EG---DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI  343 (504)
Q Consensus       268 v~~l~~s~-~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~  343 (504)
                      |+++++.. ++   +.|++|+.|..|++|+-.     ..+..+.. .+.|.++.-... ..|+.+..+|+|-+|+-..  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--
Confidence            67777765 32   479999999999999744     45555543 466888877654 6799999999999998532  


Q ss_pred             EEEEeecCCCCCCCCCeEEEEECC---CC-CEEEEEeCCCcEE
Q 010669          344 CLTQVSDAGTDGRPEGYTSAAFHP---DG-LILGTGTSEALVK  382 (504)
Q Consensus       344 ~~~~~~~~~~~~~~~~v~~~~~~p---dg-~~l~~g~~dg~I~  382 (504)
                      .+..++      ....++++++..   || .-|++|-.+|.|-
T Consensus        73 RlWRiK------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 RLWRIK------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeec------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            233332      123356655544   33 3688888888774

>smart00320 WD40 WD40 repeats

Probab=97.45  E-value=0.00033  Score=42.88  Aligned_cols=39  Identities=38%  Similarity=0.790  Sum_probs=34.0

Q ss_pred             CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669          255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       255 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd  293 (504)
                      ++....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345566778889999999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.43  E-value=0.048  Score=50.01  Aligned_cols=194  Identities=9%  Similarity=0.114  Sum_probs=124.5

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc-CccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ...|.++.|+|+.+.|++....+.-.||=..+|+.++++.- .-...-.+.|..++.+.++--.++.+.++.+..+....
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            34599999999999998888888888887778999888752 12234567888788888877788888888776542211


Q ss_pred             eeE----Eec--cC-CcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC-----CCCCCCeEEEEECC-C
Q 010669          302 CKH----TLK--DH-TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT-----DGRPEGYTSAAFHP-D  368 (504)
Q Consensus       302 ~~~----~~~--~h-~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p-d  368 (504)
                      ...    .+.  .+ +...-.++|.|.+..|+.+=.-.-+.||.+..+...........     .-.-..+.++.|++ .
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~  244 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT  244 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence            111    111  22 55678999999999888888777777776653321111100000     00123477888987 6


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeeCCC---------CCeEEEEEcCCCcEEEEE
Q 010669          369 GLILGTGTSEALVKIWDVKSQANVAKFDGHV---------GAVTAISFSENGYYLATA  417 (504)
Q Consensus       369 g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~g~~l~s~  417 (504)
                      +.+++-+.+++.+.-.|.. |.++..+.-+.         ...-.|+..++|.+.+++
T Consensus       245 ~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS  301 (316)
T COG3204         245 NSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS  301 (316)
T ss_pred             CcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence            7788888888888888864 44333332111         134557777766644443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.43  E-value=0.1  Score=52.55  Aligned_cols=191  Identities=16%  Similarity=0.197  Sum_probs=104.1

Q ss_pred             eeEEEEeeCCCEEEEE-eCCC----cEEEEeCCCCCCcceeE-EeccCCcCeEEEEEccCCCEEEEEeCCC---------
Q 010669          268 VTSVKFVTEGDLFLTG-SADK----TVRVWQGSEDGNYDCKH-TLKDHTAEVQAVTVHATNKYFVTASLDN---------  332 (504)
Q Consensus       268 v~~l~~s~~~~~l~s~-s~dg----~i~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~s~s~dg---------  332 (504)
                      +....++|+|++++.+ +..|    +++++|+.++   ..+. .+..  .....+.|.++++.|+....+.         
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            4467889999987754 3334    5999999886   2222 2221  1123499999988776665433         


Q ss_pred             --eEEEEECCCCeEE--EEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC----CcEEEEEcCCC----ceeeeeeCCCC
Q 010669          333 --TWCFYDLSSGICL--TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE----ALVKIWDVKSQ----ANVAKFDGHVG  400 (504)
Q Consensus       333 --~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d----g~I~iwd~~~~----~~~~~~~~~~~  400 (504)
                        .|+.|.+.+...-  ..+...   ........+..++|+++++.....    ..+.+.|+..+    .....+.....
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~---~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~  277 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEP---DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED  277 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-T---TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred             CcEEEEEECCCChHhCeeEEeec---CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence              3788888776433  223211   111236788999999988764432    35788888764    22333332333


Q ss_pred             Ce-EEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcc--ee-eeecCCCCCCeeEEEECCCCCEEEEEeC-c----EEEE
Q 010669          401 AV-TAISFSENGYYLATAAHD---G-VKLWDLRKLKN--FR-SFESSDSETPTNSVDFDHSGSYLAVASA-D----IRVY  467 (504)
Q Consensus       401 ~i-~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~--~~-~~~~~~~~~~v~~i~~~~~g~~l~~~~~-d----i~vw  467 (504)
                      .+ ..+... ++.+++....+   + |...++.....  .. .+..+.....+..+.  ..+.+|+.... +    |++|
T Consensus       278 ~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~  354 (414)
T PF02897_consen  278 GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRVY  354 (414)
T ss_dssp             S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEEE
Confidence            33 344443 55555554443   3 66678777653  22 232221112344444  45556655443 3    8888


Q ss_pred             Ee
Q 010669          468 QV  469 (504)
Q Consensus       468 ~~  469 (504)
                      ++
T Consensus       355 ~~  356 (414)
T PF02897_consen  355 DL  356 (414)
T ss_dssp             ET
T ss_pred             EC
Confidence            87

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.42  E-value=0.074  Score=51.89  Aligned_cols=223  Identities=12%  Similarity=0.136  Sum_probs=101.0

Q ss_pred             CCCEEEEEe-CCCcEEEEcCCCC----ceEEEccc---Cc----cceeEEEEeeCCCEEEEEe--C----CCcEEEEeCC
Q 010669          234 SKDVIATGG-VDTNAVLFDRPSG----QIVTTLSG---HS----KKVTSVKFVTEGDLFLTGS--A----DKTVRVWQGS  295 (504)
Q Consensus       234 ~~~~l~sg~-~dg~i~vwd~~~~----~~~~~~~~---h~----~~v~~l~~s~~~~~l~s~s--~----dg~i~iwd~~  295 (504)
                      +.++|+..+ ..+.|+|+|+.+.    ++.+.+..   +.    .....+-.-|+|+.++++-  .    -|-+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345776666 7789999998742    44444432   11    1122233346888888753  2    2456677655


Q ss_pred             CCCCcceeEEecc---CCcCeEEEEEccCCCEEEEEeC--------------------CCeEEEEECCCCeEEEEeecCC
Q 010669          296 EDGNYDCKHTLKD---HTAEVQAVTVHATNKYFVTASL--------------------DNTWCFYDLSSGICLTQVSDAG  352 (504)
Q Consensus       296 ~~~~~~~~~~~~~---h~~~v~~l~~~p~~~~l~s~s~--------------------dg~i~iwd~~~~~~~~~~~~~~  352 (504)
                      +-   ........   ....-..+-|+|..+.++|+..                    ..++.+||+.+.+.++.+... 
T Consensus       166 tf---~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg-  241 (461)
T PF05694_consen  166 TF---EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG-  241 (461)
T ss_dssp             T-----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES--
T ss_pred             cc---cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC-
Confidence            42   33333322   1234567888998888888753                    357999999999999988742 


Q ss_pred             CCCCCCCeEEEEEC--CCCCEEEEEe-CCCcEEEE-EcCCCc----eeeeeeC-----------------CCCCeEEEEE
Q 010669          353 TDGRPEGYTSAAFH--PDGLILGTGT-SEALVKIW-DVKSQA----NVAKFDG-----------------HVGAVTAISF  407 (504)
Q Consensus       353 ~~~~~~~v~~~~~~--pdg~~l~~g~-~dg~I~iw-d~~~~~----~~~~~~~-----------------~~~~i~~l~~  407 (504)
                        ........+.|.  |+..+=++|+ -.++|..| ....++    .+..+..                 -..-|+.|..
T Consensus       242 --~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i  319 (461)
T PF05694_consen  242 --EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI  319 (461)
T ss_dssp             --TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred             --CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence              111234455554  4444433332 33444444 323331    2222211                 0245899999


Q ss_pred             cCCCcEEEEEeCC-c-EEEEEcCCCccee---eeecC--------------CCCCCeeEEEECCCCCEEEEEeC
Q 010669          408 SENGYYLATAAHD-G-VKLWDLRKLKNFR---SFESS--------------DSETPTNSVDFDHSGSYLAVASA  462 (504)
Q Consensus       408 s~~g~~l~s~~~d-~-v~vwd~~~~~~~~---~~~~~--------------~~~~~v~~i~~~~~g~~l~~~~~  462 (504)
                      |.|.++|..++-- | |+.||+......+   .+...              ...+...-+..|-||+.|++.++
T Consensus       320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            9999999888765 6 9999998643222   21111              11223467888999998887654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.41  E-value=0.039  Score=57.59  Aligned_cols=231  Identities=14%  Similarity=0.113  Sum_probs=118.0

Q ss_pred             CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe------CCCcEEEEeCCCCCCcceeEEeccCCcCeEEEE
Q 010669          244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS------ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT  317 (504)
Q Consensus       244 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~  317 (504)
                      +|.+.-.+-..-..+.-..+....+...+++|+|+.++...      .|..-.+|-...++...  ....+  .....-.
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~--~lt~g--~~~t~Ps  403 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV--QVLEG--HSLTRPS  403 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcce--eeecC--CCCCCce
Confidence            66665544222222222223334678899999999876554      24444444332222112  11223  2378889


Q ss_pred             EccCCCEEEEEeCCC-eEEEEECCCCeEEEEeecCCCC---CCCCCeEEEEECCCCCEEEEEeCCCcEEE---EEcCCCc
Q 010669          318 VHATNKYFVTASLDN-TWCFYDLSSGICLTQVSDAGTD---GRPEGYTSAAFHPDGLILGTGTSEALVKI---WDVKSQA  390 (504)
Q Consensus       318 ~~p~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~---~~~~~v~~~~~~pdg~~l~~g~~dg~I~i---wd~~~~~  390 (504)
                      |+|+|..+.+.+... .+++.+-.....+..+......   .....|..+.|+|||..++... +|.|.+   -....|.
T Consensus       404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~  482 (591)
T PRK13616        404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ  482 (591)
T ss_pred             ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence            999988777775432 2223322221122211110000   1134699999999999888765 477776   3333443


Q ss_pred             e-e---eeee-CCCCCeEEEEEcCCCcEEEEEeCCc---EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669          391 N-V---AKFD-GHVGAVTAISFSENGYYLATAAHDG---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA  462 (504)
Q Consensus       391 ~-~---~~~~-~~~~~i~~l~~s~~g~~l~s~~~d~---v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~  462 (504)
                      . +   ..+. +-...+.++.|..++.++ ++..++   +...++.... ...+........+..++=+++  -+++...
T Consensus       483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~  558 (591)
T PRK13616        483 YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTDA  558 (591)
T ss_pred             eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEcC
Confidence            1 1   1122 222346889999998865 444443   4444444222 122222212456677776663  3444444


Q ss_pred             cEEEEEee---ccCccceeEEEccC
Q 010669          463 DIRVYQVA---SVKADWNCIKTFPD  484 (504)
Q Consensus       463 di~vw~~~---~~~~~~~~i~~~~~  484 (504)
                      +. +|.+.   .....|+.+..+.+
T Consensus       559 ~g-~~~l~~~~~~~~~W~ev~~l~g  582 (591)
T PRK13616        559 RA-VLQLPNSDSGDQYWREVPGLMG  582 (591)
T ss_pred             Cc-eEEecCCCCCCCCceECccccC
Confidence            42 33332   22356887777655

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.40  E-value=0.04  Score=50.13  Aligned_cols=209  Identities=15%  Similarity=0.169  Sum_probs=126.0

Q ss_pred             EEEeccCCC-EEEEEeCCCc-EEEEcCCCCceEEEcccCccc--eeEEEEeeCCCEEEEEeCC-----CcEEEEeCCCCC
Q 010669          228 SLDIHYSKD-VIATGGVDTN-AVLFDRPSGQIVTTLSGHSKK--VTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDG  298 (504)
Q Consensus       228 ~~~~s~~~~-~l~sg~~dg~-i~vwd~~~~~~~~~~~~h~~~--v~~l~~s~~~~~l~s~s~d-----g~i~iwd~~~~~  298 (504)
                      .++|+|... -++.+-.-|+ ..++|....+...++...++.  --.-.|||||.+|+..-.|     |.|-|||...  
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~--  149 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE--  149 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc--
Confidence            566777543 4555555554 567888776655444322211  1223689999998876443     7899999874  


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeC------------------CCeEEEEECCCCeEEEEeecCCCCCCCCCe
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASL------------------DNTWCFYDLSSGICLTQVSDAGTDGRPEGY  360 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  360 (504)
                      .++.+..+..|.-.-..+.|.+||+.++.+..                  .-++.+.|..+|..+.+.... ..-+...+
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp-~~l~~lSi  228 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP-ASLRQLSI  228 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc-hhhhhcce
Confidence            35677778888878889999999999887632                  012333343444444333211 11234568


Q ss_pred             EEEEECCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeC-------CCCCeEEEEEcCCCcEEEEEeCCc--EEEEE
Q 010669          361 TSAAFHPDGLILGTGTSEAL-----VKIWDVKSQANVAKFDG-------HVGAVTAISFSENGYYLATAAHDG--VKLWD  426 (504)
Q Consensus       361 ~~~~~~pdg~~l~~g~~dg~-----I~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd  426 (504)
                      ..++..+||..++.+-..|.     -.+=-.+.++++.-+..       ....|-+|+.+.+..+++..+-.|  ..+||
T Consensus       229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d  308 (366)
T COG3490         229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD  308 (366)
T ss_pred             eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence            88888888887766544331     11111123333333321       234677888887666666655554  88999


Q ss_pred             cCCCcceeeeecC
Q 010669          427 LRKLKNFRSFESS  439 (504)
Q Consensus       427 ~~~~~~~~~~~~~  439 (504)
                      ..++..+..-...
T Consensus       309 a~tG~vv~~a~l~  321 (366)
T COG3490         309 AATGAVVSEAALP  321 (366)
T ss_pred             cCCCcEEeccccc
Confidence            9999877655443

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.40  E-value=3.7e-05  Score=70.07  Aligned_cols=49  Identities=20%  Similarity=0.306  Sum_probs=45.8

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccc
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIV   51 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~   51 (504)
                      .|.||.|-+..|+++| |||+|+--||.+||..+..||.|--+.++.+|.
T Consensus        25 RC~IC~eyf~ip~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr   73 (442)
T KOG0287|consen   25 RCGICFEYFNIPMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLR   73 (442)
T ss_pred             HHhHHHHHhcCceecc-ccchHHHHHHHHHhccCCCCCceecccchhhhh
Confidence            5999999999999999 999999999999999999999999888877764

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.40  E-value=0.00023  Score=46.04  Aligned_cols=39  Identities=28%  Similarity=0.460  Sum_probs=31.7

Q ss_pred             ccccCCCCC---CCceEeCCCCeeeeHHHHHHHHHhcCCCCCC
Q 010669            2 NCSISGEVP---EEPVVSKNSGLLFEKRLIERHILDYGKCPVT   41 (504)
Q Consensus         2 ~c~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   41 (504)
                      .|+|+.+.+   +.++..+ +||+|.+.+|.+|++.+++||+.
T Consensus         2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~C   43 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVC   43 (44)
T ss_dssp             CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTT
T ss_pred             CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCcc
Confidence            488888875   3455564 99999999999999999999986

...

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.37  E-value=0.00025  Score=45.96  Aligned_cols=44  Identities=30%  Similarity=0.555  Sum_probs=38.8

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPL   45 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~   45 (504)
                      .|+|..+.+.+|++.+..||.|.+.++.+|++. +.+||+.+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            389999999889888779999999999999998 67899988654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.32  E-value=0.27  Score=50.90  Aligned_cols=157  Identities=13%  Similarity=0.135  Sum_probs=91.3

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEccc--Ccc--ceeEEEEeeCCCEEEEEe------CCCcEEEEeCCCCCCcceeE
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSG--HSK--KVTSVKFVTEGDLFLTGS------ADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~--~v~~l~~s~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~  304 (504)
                      +..++.++.|+.+.-+|..+|+.+.....  +..  .+++--.--++ .++.+.      .+|.|..+|..++...-...
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            34677788899999999999998876542  111  12111111134 445443      26888888887763211111


Q ss_pred             Eecc---------------------------C-CcCeE-EEEEccCCCEEEEEeCC-----C-----------eEEEEEC
Q 010669          305 TLKD---------------------------H-TAEVQ-AVTVHATNKYFVTASLD-----N-----------TWCFYDL  339 (504)
Q Consensus       305 ~~~~---------------------------h-~~~v~-~l~~~p~~~~l~s~s~d-----g-----------~i~iwd~  339 (504)
                      ....                           + .+.++ .+.+.|...+++.+..+     +           .|.-.|+
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence            1110                           0 11222 34566666666665421     2           5777899


Q ss_pred             CCCeEEEEeecCCCCCCC----CCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCcee
Q 010669          340 SSGICLTQVSDAGTDGRP----EGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANV  392 (504)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~----~~v~~~~~~pdg~---~l~~g~~dg~I~iwd~~~~~~~  392 (504)
                      ++|+..-.+.....+...    ....-+.+..+|+   .++.++.+|.+++.|-++++.+
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            999988777632221111    1223334445776   7889999999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.31  E-value=0.12  Score=46.54  Aligned_cols=136  Identities=15%  Similarity=0.171  Sum_probs=89.8

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCe-
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV-  313 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-  313 (504)
                      ..+++.|+..+.+.--|..+|+.+..-. -...|-+-+.- -|++++.|...|.+.+.+..++.   ....+..- +.| 
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs---~~w~f~~~-~~vk   96 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS---QIWNFVIL-ETVK   96 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchh---heeeeeeh-hhhc
Confidence            4578889999999999999988765432 12334333332 57789999999999999999873   22222221 122 


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEE
Q 010669          314 QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVK  382 (504)
Q Consensus       314 ~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~  382 (504)
                      ......+++..+..|+.|+..+..|.++..++...+-.+     ....+-++.| ++.++++. ..|.+.
T Consensus        97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG-----~~f~sP~i~~g~~sly~a~-t~G~vl  160 (354)
T KOG4649|consen   97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG-----GTFVSPVIAPGDGSLYAAI-TAGAVL  160 (354)
T ss_pred             cceEEcCCCceEEEecCCCcEEEecccccceEEecccCC-----ceeccceecCCCceEEEEe-ccceEE
Confidence            223456789999999999999999999999888765321     2233345556 55544443 344443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.30  E-value=0.07  Score=50.31  Aligned_cols=152  Identities=17%  Similarity=0.173  Sum_probs=94.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeec----C
Q 010669          276 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD----A  351 (504)
Q Consensus       276 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~  351 (504)
                      .++.|+.|..+| +.+++.....  ......  +...|..+...|+-+.+++-+ |+.+.++++..-........    .
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~--~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPS--KPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCc--cceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence            577899999998 8999883322  222222  233499999998877777665 49999999876544331100    0


Q ss_pred             -----CCCCCCCCeEEEE--ECCCCCEEEEEeCCCcEEEEEcCCC-----ceeeeeeCCCCCeEEEEEcCCCcEEEEEeC
Q 010669          352 -----GTDGRPEGYTSAA--FHPDGLILGTGTSEALVKIWDVKSQ-----ANVAKFDGHVGAVTAISFSENGYYLATAAH  419 (504)
Q Consensus       352 -----~~~~~~~~v~~~~--~~pdg~~l~~g~~dg~I~iwd~~~~-----~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~  419 (504)
                           ........+..++  -...+...++......|.+|.....     +....+. -...+..++|.  +..++.|..
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~  156 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS  156 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence                 0001123344444  1223333334444558998888653     3445554 34688999997  667888888


Q ss_pred             CcEEEEEcCCCcceeee
Q 010669          420 DGVKLWDLRKLKNFRSF  436 (504)
Q Consensus       420 d~v~vwd~~~~~~~~~~  436 (504)
                      ++..+.|+.++.....+
T Consensus       157 ~~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  157 KGFYLIDLNTGSPSELL  173 (275)
T ss_pred             CceEEEecCCCCceEEe
Confidence            88999999976654433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=97.28  E-value=0.01  Score=61.81  Aligned_cols=187  Identities=9%  Similarity=0.104  Sum_probs=98.9

Q ss_pred             CCCEEEEEeCC------CcEEEEcCCCCceEEEcccCccce-eEEEEeeCCCEEEEEeCCC-----cEEEEeCCCCCCcc
Q 010669          234 SKDVIATGGVD------TNAVLFDRPSGQIVTTLSGHSKKV-TSVKFVTEGDLFLTGSADK-----TVRVWQGSEDGNYD  301 (504)
Q Consensus       234 ~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~h~~~v-~~l~~s~~~~~l~s~s~dg-----~i~iwd~~~~~~~~  301 (504)
                      ++.+++.||.+      ..+..||..+..- ..+..-..+- ......-+|.+.+.||.++     ++..||..++ .|.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~-~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD-KWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCC-eEE
Confidence            56777777753      2467788766543 2222111111 1111123677778888764     4788998763 344


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCC-----------------------eEEEEECCCCeEEEEeecCCCCCCCC
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDN-----------------------TWCFYDLSSGICLTQVSDAGTDGRPE  358 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~  358 (504)
                      ....+.........+.+  +|...+.|+.++                       .+..||.++.+-...-.   . ....
T Consensus       381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~---m-~~~r  454 (557)
T PHA02713        381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN---F-WTGT  454 (557)
T ss_pred             ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC---C-Cccc
Confidence            33333221111222222  677777787653                       47778887765432211   1 0111


Q ss_pred             CeEEEEECCCCCEEEEEeCC------CcEEEEEcCC-C--ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc---EEEEE
Q 010669          359 GYTSAAFHPDGLILGTGTSE------ALVKIWDVKS-Q--ANVAKFDGHVGAVTAISFSENGYYLATAAHDG---VKLWD  426 (504)
Q Consensus       359 ~v~~~~~~pdg~~l~~g~~d------g~I~iwd~~~-~--~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~---v~vwd  426 (504)
                      .-.+++ .-+|++.+.|+.+      ..+..||..+ .  ..+..+.........+.+  +|.+.++|+.++   +..||
T Consensus       455 ~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd  531 (557)
T PHA02713        455 IRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFN  531 (557)
T ss_pred             ccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcC
Confidence            111222 2257777888754      2467899876 3  333444333333334444  788888888776   77777


Q ss_pred             cCCCc
Q 010669          427 LRKLK  431 (504)
Q Consensus       427 ~~~~~  431 (504)
                      ..+.+
T Consensus       532 ~~~~~  536 (557)
T PHA02713        532 VYTYE  536 (557)
T ss_pred             ccccc
Confidence            76654

>PF04641 Rtf2: Rtf2 RING-finger

Probab=97.28  E-value=0.00028  Score=65.57  Aligned_cols=53  Identities=26%  Similarity=0.631  Sum_probs=43.9

Q ss_pred             CccccCCCCCCC--c--eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccccC
Q 010669            1 MNCSISGEVPEE--P--VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKT   55 (504)
Q Consensus         1 ~~c~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~   55 (504)
                      ++||||+..+..  +  ++- .|||||-.++|++.= ....||+||++.+.+|+|+|..
T Consensus       114 ~~CPvt~~~~~~~~~fv~l~-~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp  170 (260)
T PF04641_consen  114 FICPVTGKEFNGKHKFVYLR-PCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNP  170 (260)
T ss_pred             eECCCCCcccCCceeEEEEc-CCCCEeeHHHHHhhc-ccccccccCCccccCCEEEecC
Confidence            579999999843  2  444 499999999999983 4567999999999999999943

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=97.27  E-value=9.5e-05  Score=65.40  Aligned_cols=43  Identities=30%  Similarity=0.496  Sum_probs=39.2

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhc-C-CCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY-G-KCPVTGEP   44 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~p~~~~~   44 (504)
                      .|+||..+...||+|.+|||+|+|.-|+.++... + .||+-|-+
T Consensus       178 rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  178 RDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             cCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            6999999999999999999999999999999964 3 59998866

>PHA02713 hypothetical protein; Provisional

Probab=97.26  E-value=0.045  Score=57.12  Aligned_cols=218  Identities=9%  Similarity=0.102  Sum_probs=108.4

Q ss_pred             cEEEEcCCCCceEEEcccCccce--eEEEEeeCCCEEEEEeCC------CcEEEEeCCCCCCcceeEEeccCCcCeEEEE
Q 010669          246 NAVLFDRPSGQIVTTLSGHSKKV--TSVKFVTEGDLFLTGSAD------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT  317 (504)
Q Consensus       246 ~i~vwd~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~  317 (504)
                      .+..||..+++-.. +..-..+.  .+++. -++..++.||.+      ..+..||..+. .|.....+....... +++
T Consensus       273 ~v~~yd~~~~~W~~-l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~-~~~  348 (557)
T PHA02713        273 CILVYNINTMEYSV-ISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRCRF-SLA  348 (557)
T ss_pred             CEEEEeCCCCeEEE-CCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhhce-eEE
Confidence            46778877654322 21111111  12222 366777777754      34677887763 333322222111112 222


Q ss_pred             EccCCCEEEEEeCCC-----eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC-------------
Q 010669          318 VHATNKYFVTASLDN-----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-------------  379 (504)
Q Consensus       318 ~~p~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg-------------  379 (504)
                       .-+|+..+.||.++     .+..||..++.-.. ...  ..........+.  -+|.+.+.|+.++             
T Consensus       349 -~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~--mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~  422 (557)
T PHA02713        349 -VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPD--MPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSI  422 (557)
T ss_pred             -EECCEEEEECCcCCCCCCceEEEEECCCCeEEE-CCC--CCcccccccEEE--ECCEEEEEeCCCcccccccccccccc
Confidence             22677888888764     47889988764332 111  101111112222  2688888887653             


Q ss_pred             ----------cEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC------c-EEEEEcCC-Cc--ceeeee
Q 010669          380 ----------LVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHD------G-VKLWDLRK-LK--NFRSFE  437 (504)
Q Consensus       380 ----------~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d------~-v~vwd~~~-~~--~~~~~~  437 (504)
                                .+..||..+.+  .+..+.........+.+  +|.+.+.|+.+      . +..||..+ .+  .+..+.
T Consensus       423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~  500 (557)
T PHA02713        423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE  500 (557)
T ss_pred             cccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence                      47778876643  22222211111112223  67766767643      2 67899886 33  222222


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCc----EEEEEeeccCccceeEEE
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVASVKADWNCIKT  481 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~d----i~vw~~~~~~~~~~~i~~  481 (504)
                      ..  ......+.+  +|.+.++||.+    +..||..  +.+|+.+..
T Consensus       501 ~~--r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~--~~~W~~~~~  542 (557)
T PHA02713        501 SR--LSALHTILH--DNTIMMLHCYESYMLQDTFNVY--TYEWNHICH  542 (557)
T ss_pred             cc--cccceeEEE--CCEEEEEeeecceeehhhcCcc--cccccchhh
Confidence            21  222222333  67777778765    5666654  367887654

>smart00320 WD40 WD40 repeats

Probab=97.22  E-value=0.00099  Score=40.60  Aligned_cols=38  Identities=37%  Similarity=0.493  Sum_probs=33.4

Q ss_pred             ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEE
Q 010669          301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD  338 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd  338 (504)
                      .+...+..|...|.++.|++.+..+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566678889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.21  E-value=0.17  Score=46.38  Aligned_cols=187  Identities=11%  Similarity=0.068  Sum_probs=116.3

Q ss_pred             CeEEEEeccCCCEEEEEeCCC--cEEEEcCCCCceEEEcccCcc-ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          225 GIVSLDIHYSKDVIATGGVDT--NAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      -.-.+.|..+|.++-+.|.-|  .|+.+|+.+++......-... ---.++.. ++++..-.-.++...+||..+-   +
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl---~  121 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTL---K  121 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTT---E
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccc---e
Confidence            345677877888888887766  688999999987765542211 11223332 3444445567889999998764   5


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      .+.++. ..+.=+.++  .+++.|+.+.....++++|..+.+....+........-..++-+.|. +|.+.|=.-....|
T Consensus       122 ~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I  197 (264)
T PF05096_consen  122 KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI  197 (264)
T ss_dssp             EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence            566554 335567777  36777888777889999999887776665532111112345667776 67777777777788


Q ss_pred             EEEEcCCCceeeeeeC------------C---CCCeEEEEEcCCCcEEEEEeC
Q 010669          382 KIWDVKSQANVAKFDG------------H---VGAVTAISFSENGYYLATAAH  419 (504)
Q Consensus       382 ~iwd~~~~~~~~~~~~------------~---~~~i~~l~~s~~g~~l~s~~~  419 (504)
                      ...|..+|+.+..+.-            +   ..-.+.|+|.|.+..|...+.
T Consensus       198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            8899999987765521            1   245889999987655555443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.20  E-value=0.17  Score=46.33  Aligned_cols=202  Identities=15%  Similarity=0.130  Sum_probs=121.7

Q ss_pred             ceEEEcccCccc-eeEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC
Q 010669          256 QIVTTLSGHSKK-VTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN  332 (504)
Q Consensus       256 ~~~~~~~~h~~~-v~~l~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg  332 (504)
                      +.+.++...... .-.+.|..+|.++-+.+.-|  .|+.+|+.++.. .....+. ..-.--.++.. +++.+.-.=.++
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~-~~~~~l~-~~~FgEGit~~-~d~l~qLTWk~~  110 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKV-LQSVPLP-PRYFGEGITIL-GDKLYQLTWKEG  110 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSE-EEEEE-T-TT--EEEEEEE-TTEEEEEESSSS
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcE-EEEEECC-ccccceeEEEE-CCEEEEEEecCC
Confidence            445555533332 34677777888888887666  788999988631 1122222 12223344444 233344444688


Q ss_pred             eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCC-----CCCeEEEEE
Q 010669          333 TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH-----VGAVTAISF  407 (504)
Q Consensus       333 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~-----~~~i~~l~~  407 (504)
                      ...+||..+.+.+..+...      ..=..++  .||..|+.......|+++|..+.+....+...     -..++-+.|
T Consensus       111 ~~f~yd~~tl~~~~~~~y~------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~  182 (264)
T PF05096_consen  111 TGFVYDPNTLKKIGTFPYP------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY  182 (264)
T ss_dssp             EEEEEETTTTEEEEEEE-S------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE
T ss_pred             eEEEEccccceEEEEEecC------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE
Confidence            9999999999988888632      2334555  45667777777788999999887776665432     124666777


Q ss_pred             cCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC-------------CCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          408 SENGYYLATAAHDG-VKLWDLRKLKNFRSFESS-------------DSETPTNSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       408 s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~-------------~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                      - +|...|=.-... |...|..+|+....+...             ......+.|+|+|....+.+.|.. =++|.+
T Consensus       183 i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV  258 (264)
T PF05096_consen  183 I-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEV  258 (264)
T ss_dssp             E-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEE
T ss_pred             E-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEE
Confidence            5 676555554444 888898888877655321             013457899999999888888877 677766

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.19  E-value=0.00073  Score=42.90  Aligned_cols=38  Identities=29%  Similarity=0.516  Sum_probs=32.2

Q ss_pred             cccCCCCCCCceEeCCCCeeeeHHHHHHHHHhc--CCCCC
Q 010669            3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDY--GKCPV   40 (504)
Q Consensus         3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~   40 (504)
                      |+|..+.+.+|++....||.|.+.+|.+|++.+  -+||.
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~   40 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPL   40 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCc
Confidence            899999999999444699999999999999943  35775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.17  E-value=0.19  Score=46.22  Aligned_cols=197  Identities=13%  Similarity=0.206  Sum_probs=121.1

Q ss_pred             ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec--cCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 010669          262 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDL  339 (504)
Q Consensus       262 ~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~  339 (504)
                      .+-...+.++.|+|+.+.|++......-.||=-..+   ..+.++.  +. ...-.|.+..+|++.++--.++.+.++.+
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G---dlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG---DLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCC---ceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            445556999999999998888777766666643333   4555443  22 23456777777777777777888888877


Q ss_pred             CCCeEEEEe-----ecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee---eeeCC-------CCCeEE
Q 010669          340 SSGICLTQV-----SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA---KFDGH-------VGAVTA  404 (504)
Q Consensus       340 ~~~~~~~~~-----~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~---~~~~~-------~~~i~~  404 (504)
                      .........     ........+.+.-.++|+|....|+++-+..-+.||.+..+....   ....+       -..|++
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            665332222     111122226678899999988888888888888888775432111   11111       235778


Q ss_pred             EEEcCC-CcEEEEEeCCc-EEEEEcCCCcceeeeecCCC-------CCCeeEEEECCCCCEEEEEeCc
Q 010669          405 ISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       405 l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~-------~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      +.|++. +.+|+-+.+++ +.-.|... ..+..+.....       ....-.++.+++|..-+++-.+
T Consensus       238 l~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn  304 (316)
T COG3204         238 LEFNAITNSLLVLSDESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN  304 (316)
T ss_pred             ceecCCCCcEEEEecCCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence            889874 55666666666 66677653 33333332211       1234578888888766655444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.14  E-value=0.049  Score=49.62  Aligned_cols=145  Identities=14%  Similarity=0.183  Sum_probs=97.8

Q ss_pred             eEEEEEccCCC-EEEEEeCCCe-EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEE
Q 010669          313 VQAVTVHATNK-YFVTASLDNT-WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----ALVKIWD  385 (504)
Q Consensus       313 v~~l~~~p~~~-~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d-----g~I~iwd  385 (504)
                      ...|.|||... -++.+-.-|+ ..++|....+....+...   ......-.-.|||||.+|...-.|     |.|-|||
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~---~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd  146 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ---EGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD  146 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc---cCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence            44678888544 4555555554 568899888777666522   111223345799999999876433     7899999


Q ss_pred             cCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-------------------cEEEEEcCCCcceeeeecC--CCCC
Q 010669          386 VKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHD-------------------GVKLWDLRKLKNFRSFESS--DSET  443 (504)
Q Consensus       386 ~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-------------------~v~vwd~~~~~~~~~~~~~--~~~~  443 (504)
                      .+.+ +.+.++..|.-....+.|.+||+.|+.+..+                   .+.+.|-.++..+.+...+  .+..
T Consensus       147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l  226 (366)
T COG3490         147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL  226 (366)
T ss_pred             cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence            9864 5677888888888899999999999887531                   1334444455554444333  3345


Q ss_pred             CeeEEEECCCCCEEEEE
Q 010669          444 PTNSVDFDHSGSYLAVA  460 (504)
Q Consensus       444 ~v~~i~~~~~g~~l~~~  460 (504)
                      .+..++..+||..++.+
T Consensus       227 SiRHld~g~dgtvwfgc  243 (366)
T COG3490         227 SIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             ceeeeeeCCCCcEEEEE
Confidence            78888888888877755

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.14  E-value=0.033  Score=58.05  Aligned_cols=183  Identities=13%  Similarity=0.115  Sum_probs=101.7

Q ss_pred             CeEEEEeccCCCEEEEEe------CCC--cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC----------
Q 010669          225 GIVSLDIHYSKDVIATGG------VDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD----------  286 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~------~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d----------  286 (504)
                      .+.+.+++|+|+.++...      .|+  .|.+++.. +.......+.  ..+.-.|+|+|..+.+....          
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence            577889999999776654      243  45555542 3322222332  37888999998877666432          


Q ss_pred             --CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEE---EECCCCeEEEEeecC-C-CCCCCCC
Q 010669          287 --KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF---YDLSSGICLTQVSDA-G-TDGRPEG  359 (504)
Q Consensus       287 --g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~i---wd~~~~~~~~~~~~~-~-~~~~~~~  359 (504)
                        +.+.+.++..+   ....   ...+.|..+.|+|||..++... +|.|++   -....|.  ..+... . .......
T Consensus       428 ~~gql~~~~vd~g---e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~  498 (591)
T PRK13616        428 ATGQLARTPVDAS---AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDT  498 (591)
T ss_pred             CCceEEEEeccCc---hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCc
Confidence              22222233321   1111   2345799999999999888766 477777   4434443  111100 0 0011233


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeC--CCCCeEEEEEcCCCcEEEEEeCCcE
Q 010669          360 YTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDG--HVGAVTAISFSENGYYLATAAHDGV  422 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~~dg~I~iwd~~~-~~~~~~~~~--~~~~i~~l~~s~~g~~l~s~~~d~v  422 (504)
                      +..+.|..++.++ ++..++.-.+|.+.- |.....+..  ...++..|+-+++  .++....+++
T Consensus       499 ~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        499 AVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             cccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            5789999999855 555555445555432 222212222  2456777777753  4555566663

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.12  E-value=0.051  Score=42.45  Aligned_cols=100  Identities=18%  Similarity=0.215  Sum_probs=66.4

Q ss_pred             eEEEEecc---CC-CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          226 IVSLDIHY---SK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       226 I~~~~~s~---~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      |+++++..   +| +.|++|+.|..|++|+-  .+.+..+.. .+.|++++-... ..++.+..+|+|-+|+-..     
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-----   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-----   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc-----
Confidence            45555543   43 48999999999999975  466666663 456788776654 5688899999999997643     


Q ss_pred             eeEEeccCCcCeEEEEEcc-CC---CEEEEEeCCCeEE
Q 010669          302 CKHTLKDHTAEVQAVTVHA-TN---KYFVTASLDNTWC  335 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p-~~---~~l~s~s~dg~i~  335 (504)
                      ..-.++.. ..+.++.+.. ++   ..|++|-.+|.|-
T Consensus        73 RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 RLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            22233322 3356665543 32   3688887888764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.09  E-value=0.00096  Score=58.45  Aligned_cols=142  Identities=14%  Similarity=0.173  Sum_probs=78.1

Q ss_pred             EEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669          280 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG  359 (504)
Q Consensus       280 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  359 (504)
                      +...+.||.|+-+++..-. ..+... .-|...   ...-.-+..+++|+.+|.|++|..............   +....
T Consensus        33 l~~~sa~~~v~~~~~~k~k-~s~rse-~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s---~~e~i  104 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHK-ESCRSE-RFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS---GEESI  104 (238)
T ss_pred             hccccCCcccccchhhhhh-hhhhhh-hhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhc---ccccc
Confidence            4455677777777665321 011110 111111   111223567899999999999987632111111100   11112


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC-CCeEEEEEcCCCcEEEEE--eCCc-EEEEEcCC
Q 010669          360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-GAVTAISFSENGYYLATA--AHDG-VKLWDLRK  429 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~s~--~~d~-v~vwd~~~  429 (504)
                      ...+.--.++.+..+++.||.|+.|++.-++.+.....|. .++.....+..+.+++.+  +.+. ++.|++..
T Consensus       105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            2223333467789999999999999998888777666666 344444444445555555  4444 55665543

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.06  E-value=0.00025  Score=63.36  Aligned_cols=44  Identities=27%  Similarity=0.341  Sum_probs=40.8

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   46 (504)
                      .|-|+-+-...|++|+ |||+|+.-||..||.++..||++.++--
T Consensus        27 rC~IC~~~i~ip~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          27 RCRICDCRISIPCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             Hhhhhhheeecceecc-cccchhHHHHHHHhcCCCCCccccccHH
Confidence            4999999999999997 9999999999999999999999997644

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.00041  Score=60.52  Aligned_cols=31  Identities=32%  Similarity=0.611  Sum_probs=29.3

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHH
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHIL   33 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   33 (504)
                      .|++|-.+..+|||+| .||+|||.+|.+||-
T Consensus        45 cCsLtLqPc~dPvit~-~GylfdrEaILe~il   75 (303)
T KOG3039|consen   45 CCSLTLQPCRDPVITP-DGYLFDREAILEYIL   75 (303)
T ss_pred             eeeeecccccCCccCC-CCeeeeHHHHHHHHH
Confidence            4999999999999997 699999999999996

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.99  E-value=0.022  Score=60.73  Aligned_cols=101  Identities=25%  Similarity=0.342  Sum_probs=71.9

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCC-ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcC
Q 010669          234 SKDVIATGGVDTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE  312 (504)
Q Consensus       234 ~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~  312 (504)
                      .+-.++.|+..|.+-..|.... .....-..-.++|++++|+.+|..++.|-.+|.|.+||+..+   ...+.+..|..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---k~l~~i~e~~ap  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---KILKVITEHGAP  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---cceeeeeecCCc
Confidence            4567888999999998887542 111122234578999999999999999999999999999886   455555555555


Q ss_pred             eEEEE---EccCCCEEEEEeCCCeEEEEEC
Q 010669          313 VQAVT---VHATNKYFVTASLDNTWCFYDL  339 (504)
Q Consensus       313 v~~l~---~~p~~~~l~s~s~dg~i~iwd~  339 (504)
                      .+++-   +..++..++++...|.  +|.+
T Consensus       175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            55444   3345567888877776  5544

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.99  E-value=0.0033  Score=66.57  Aligned_cols=105  Identities=20%  Similarity=0.279  Sum_probs=77.9

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCC-CCC
Q 010669          368 DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-ETP  444 (504)
Q Consensus       368 dg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~-~~~  444 (504)
                      .+..++.|++.|.+...|++.. .+...-..-.++|++++|+.+|..++.|-.+| |.+||+..++.++.+..+.+ ...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            3557889999999999998653 22222223457999999999999999999999 99999999998888776532 234


Q ss_pred             eeEEEECCCCCEEEEEeCcEEEEEeecc
Q 010669          445 TNSVDFDHSGSYLAVASADIRVYQVASV  472 (504)
Q Consensus       445 v~~i~~~~~g~~l~~~~~di~vw~~~~~  472 (504)
                      +..+.+..++..++++...+.+|++.-.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gsf~~lv~n  205 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGSFWKLVFN  205 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCceEEEEec
Confidence            5555666667767766666889987543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.95  E-value=0.62  Score=48.29  Aligned_cols=193  Identities=15%  Similarity=0.161  Sum_probs=114.3

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCc-ccee----------EEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHS-KKVT----------SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~----------~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  303 (504)
                      +..+++++.++.|+-+|..+|+.+-.+.... ..+.          .+++  .+..++.++.|+.+.-.|..++.   .+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk---~~  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGK---VV  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCC---EE
Confidence            5577777788899999999999887765211 1111          1122  23467778889999999988863   32


Q ss_pred             EEec--cCCcCeEEEEEcc--CCCEEEEEe------CCCeEEEEECCCCeEEEEeecCCCCC------------------
Q 010669          304 HTLK--DHTAEVQAVTVHA--TNKYFVTAS------LDNTWCFYDLSSGICLTQVSDAGTDG------------------  355 (504)
Q Consensus       304 ~~~~--~h~~~v~~l~~~p--~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~~------------------  355 (504)
                      -...  .+... ..+.-.|  .+..+++++      .+|.|.-+|.++|+.+-.+.......                  
T Consensus       144 W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t  222 (527)
T TIGR03075       144 WSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT  222 (527)
T ss_pred             eeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence            2221  11100 0111112  133455543      26899999999999887654321110                  


Q ss_pred             ---------CCCCeEEEEECCCCCEEEEEeCC-----C-----------cEEEEEcCCCceeeeeeC--CC-------CC
Q 010669          356 ---------RPEGYTSAAFHPDGLILGTGTSE-----A-----------LVKIWDVKSQANVAKFDG--HV-------GA  401 (504)
Q Consensus       356 ---------~~~~v~~~~~~pdg~~l~~g~~d-----g-----------~I~iwd~~~~~~~~~~~~--~~-------~~  401 (504)
                               ....-..+.+.|...++..+..+     +           .|.-.|+++|+..-.|+.  |.       ..
T Consensus       223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~  302 (527)
T TIGR03075       223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE  302 (527)
T ss_pred             CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence                     00111245777766666666522     2           567778888988766653  21       11


Q ss_pred             eEEEEEcCCCc---EEEEEeCCc-EEEEEcCCCcce
Q 010669          402 VTAISFSENGY---YLATAAHDG-VKLWDLRKLKNF  433 (504)
Q Consensus       402 i~~l~~s~~g~---~l~s~~~d~-v~vwd~~~~~~~  433 (504)
                      ..-+.+..+|.   .++.+..+| +++.|-++++.+
T Consensus       303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            12223334665   677888888 999999998875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.91  E-value=0.58  Score=49.96  Aligned_cols=256  Identities=11%  Similarity=0.171  Sum_probs=137.2

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcC--CCCceE--EEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDR--PSGQIV--TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY  300 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~--~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  300 (504)
                      .|.-..|--|..+|.++..||.+..|.+  .++..-  +...-.+.++.--.|+..+..-+.+..|.-..+|..+..   
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k---  661 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK---  661 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc---
Confidence            3555566667889999999999877654  444331  111223456666667665554444455566666654431   


Q ss_pred             ceeEEeccCCcCeEEEE-Ecc--CCCEEEEEeCCCeEEEEECCCCeEE--EEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          301 DCKHTLKDHTAEVQAVT-VHA--TNKYFVTASLDNTWCFYDLSSGICL--TQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~-~~p--~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      -+...+.  -..+..++ |+.  -...++++. .+.+.+.-++.-+.+  .++.      -......+++++...++++.
T Consensus       662 Lv~spls--~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp------l~~~prrI~~q~~sl~~~v~  732 (1096)
T KOG1897|consen  662 LVYSPLS--LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP------LGESPRRICYQESSLTFGVL  732 (1096)
T ss_pred             EEEeccc--hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeec------CCCChhheEecccceEEEEE
Confidence            1111111  11122221 221  123455544 455666655443222  2221      12346677787755555554


Q ss_pred             eCC--------------CcEEEEEcCCCceeeeee--CC--CCCeEEEEEcCC-CcEEEEEeC----------Cc-EEEE
Q 010669          376 TSE--------------ALVKIWDVKSQANVAKFD--GH--VGAVTAISFSEN-GYYLATAAH----------DG-VKLW  425 (504)
Q Consensus       376 ~~d--------------g~I~iwd~~~~~~~~~~~--~~--~~~i~~l~~s~~-g~~l~s~~~----------d~-v~vw  425 (504)
                      +..              ..++++|-++.+.+....  ..  ...|.++.|..| +.++++|+.          .| |.+|
T Consensus       733 s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivf  812 (1096)
T KOG1897|consen  733 SNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVF  812 (1096)
T ss_pred             ecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEE
Confidence            321              136667766554433222  11  124556668877 778888752          25 8888


Q ss_pred             EcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          426 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       426 d~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      .+..+..+.........+.+.++.. -+|++||..+..+++|++.    +.+.++.-..|  ..++..+++...
T Consensus       813 e~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In~~vrLye~t----~~~eLr~e~~~--~~~~~aL~l~v~  879 (1096)
T KOG1897|consen  813 EFEELNSLELVAETVVKGAVYALVE-FNGKLLAGINQSVRLYEWT----TERELRIECNI--SNPIIALDLQVK  879 (1096)
T ss_pred             EEecCCceeeeeeeeeccceeehhh-hCCeEEEecCcEEEEEEcc----ccceehhhhcc--cCCeEEEEEEec
Confidence            8877555544444333455655543 3788888888889999993    33444444444  445666655443

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.87  E-value=0.0014  Score=60.84  Aligned_cols=54  Identities=33%  Similarity=0.549  Sum_probs=45.9

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCC---CCCCCCC-CCCccccccC
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKC---PVTGEPL-TMDDIVPIKT   55 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~-~~~~~~~~~~   55 (504)
                      +|+||+++.+.|||+-.-|+.|.|..|.+||-+.+..   |.+...+ ++.||++|+-
T Consensus        36 ~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~~   93 (260)
T PF04641_consen   36 HCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVELKF   93 (260)
T ss_pred             cccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcCCCCccccccccCccceeeEEe
Confidence            6999999999999987789999999999999988654   4444444 6899999975

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.87  E-value=0.43  Score=45.21  Aligned_cols=152  Identities=14%  Similarity=0.189  Sum_probs=79.3

Q ss_pred             ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC-C
Q 010669          262 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL-S  340 (504)
Q Consensus       262 ~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~-~  340 (504)
                      ..-.+.+..+.-+++|.++++++......-||.-. ..+.+..  ..-...|..|.|.|++...+.+ ..|.|++=+. .
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~-~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~  216 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ-TTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD  216 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT--SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCC-ccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence            34456788888889999888887766667887543 2233322  2345789999999998776654 8888888872 2


Q ss_pred             CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee---CCCCCeEEEEEcCCCcEEEEE
Q 010669          341 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD---GHVGAVTAISFSENGYYLATA  417 (504)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~g~~l~s~  417 (504)
                      ......... .........+..++|.+++.+.++|+. |.+ +.....|+.-....   .-...++.|.|.++.+-++.|
T Consensus       217 ~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG  293 (302)
T PF14870_consen  217 DGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG  293 (302)
T ss_dssp             EEEEE---B--TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred             Ccccccccc-CCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence            222221111 111122345889999999888887765 433 34555555444433   234568899998766666665


Q ss_pred             eCCc
Q 010669          418 AHDG  421 (504)
Q Consensus       418 ~~d~  421 (504)
                      . +|
T Consensus       294 ~-~G  296 (302)
T PF14870_consen  294 Q-DG  296 (302)
T ss_dssp             S-TT
T ss_pred             C-Cc
Confidence            4 55

>PRK10115 protease 2; Provisional

Probab=96.86  E-value=0.9  Score=48.78  Aligned_cols=244  Identities=7%  Similarity=0.029  Sum_probs=118.3

Q ss_pred             CeEEEEeccCCCEEEEEeC-----CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC------CcEEEEe
Q 010669          225 GIVSLDIHYSKDVIATGGV-----DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD------KTVRVWQ  293 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~-----dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d------g~i~iwd  293 (504)
                      .+..+.++|||++|+.+..     ...|++.|+.+|..+...-....  ..++|.+|++.|+.+..+      ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            3667889999998877643     23588889988764322211222  459999998866554432      3567777


Q ss_pred             CCCCCCcceeEEeccCCcCeE-EEEEccCCCEEEEEeC---CCeEEEEECC--CCeEEEEeecCCCCCCCCCeEEEEECC
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQ-AVTVHATNKYFVTASL---DNTWCFYDLS--SGICLTQVSDAGTDGRPEGYTSAAFHP  367 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~l~s~s~---dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p  367 (504)
                      +.++.. .....+........ .+..+.++++++..+.   ++.+.+++..  .+.....+..    . ......+. +.
T Consensus       206 lgt~~~-~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~-~~~~~~~~-~~  278 (686)
T PRK10115        206 IGTPAS-QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR----R-KDHEYSLD-HY  278 (686)
T ss_pred             CCCChh-HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC----C-CCCEEEEE-eC
Confidence            766421 11122222222233 3333447776665443   4568888843  3332222211    1 11122222 33


Q ss_pred             CCCEEEEEeC---CCcEEEEEcCCCceeeeeeCC-C-CCeEEEEEcCCCcEEEEEeCCc---EEEEEcCCCcceeeeecC
Q 010669          368 DGLILGTGTS---EALVKIWDVKSQANVAKFDGH-V-GAVTAISFSENGYYLATAAHDG---VKLWDLRKLKNFRSFESS  439 (504)
Q Consensus       368 dg~~l~~g~~---dg~I~iwd~~~~~~~~~~~~~-~-~~i~~l~~s~~g~~l~s~~~d~---v~vwd~~~~~~~~~~~~~  439 (504)
                      .+.+++....   ...|...++........+..+ . ..|..+.+. .+.++++...++   +.++|+... .+..+...
T Consensus       279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~  356 (686)
T PRK10115        279 QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFD  356 (686)
T ss_pred             CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCC
Confidence            3333333222   223444455422222333334 2 368888887 345555666565   666776433 33433321


Q ss_pred             CCCCCeeEEEEC--CCCC-EEEEEeCc---EEEEEeeccCccceeEE
Q 010669          440 DSETPTNSVDFD--HSGS-YLAVASAD---IRVYQVASVKADWNCIK  480 (504)
Q Consensus       440 ~~~~~v~~i~~~--~~g~-~l~~~~~d---i~vw~~~~~~~~~~~i~  480 (504)
                      . ...+..+.++  +++. ++++.+.-   -.+|.++..+..+..+.
T Consensus       357 ~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~  402 (686)
T PRK10115        357 D-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK  402 (686)
T ss_pred             C-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence            1 1223333344  4444 44444333   55555543333444444

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.85  E-value=0.049  Score=54.59  Aligned_cols=151  Identities=13%  Similarity=0.181  Sum_probs=93.2

Q ss_pred             cceeEEEEeeCCCEEE-EEe--CCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC----CCEEEEEeCCCeEEEEE
Q 010669          266 KKVTSVKFVTEGDLFL-TGS--ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT----NKYFVTASLDNTWCFYD  338 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~-s~s--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~l~s~s~dg~i~iwd  338 (504)
                      .+|..++|. ||+.++ +.-  .+|.+++=|-      ..+..    -..|.++.|.|-    ...++..-..+.|.+|-
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq   88 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ   88 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc------cEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence            468899997 666544 432  2344333221      22332    244899999985    34677777889999998


Q ss_pred             CC-----CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCC
Q 010669          339 LS-----SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENG  411 (504)
Q Consensus       339 ~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g  411 (504)
                      +.     +++........-....+---..+.|||...+|++-+....=.+++++...  ....++ ..+-|.|.+|.+||
T Consensus        89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG  167 (671)
T PF15390_consen   89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDG  167 (671)
T ss_pred             eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcC
Confidence            75     22222221100000111123468899999888887666655567776433  222333 45789999999999


Q ss_pred             cEEEEEeCCc--EEEEEcC
Q 010669          412 YYLATAAHDG--VKLWDLR  428 (504)
Q Consensus       412 ~~l~s~~~d~--v~vwd~~  428 (504)
                      ..|+++-...  -++||-.
T Consensus       168 ~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CEEEEEeCCeEEEEEecCc
Confidence            9988887665  7899853

>smart00184 RING Ring finger

Probab=96.84  E-value=0.0013  Score=40.83  Aligned_cols=38  Identities=29%  Similarity=0.553  Sum_probs=33.3

Q ss_pred             cccCCCCCCCceEeCCCCeeeeHHHHHHHHH-hcCCCCCC
Q 010669            3 CSISGEVPEEPVVSKNSGLLFEKRLIERHIL-DYGKCPVT   41 (504)
Q Consensus         3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~   41 (504)
                      |+|..+....|++.+ .||.|...+|++|++ .+++||+.
T Consensus         1 C~iC~~~~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            789999999999996 999999999999999 55678863

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.74  E-value=0.085  Score=55.04  Aligned_cols=187  Identities=18%  Similarity=0.240  Sum_probs=102.4

Q ss_pred             CCCEEEEEeCC------CcEEEEcCCCCceEEEcccCccceeEEEE-eeCCCEEEEEeCCC-----cEEEEeCCCCCCcc
Q 010669          234 SKDVIATGGVD------TNAVLFDRPSGQIVTTLSGHSKKVTSVKF-VTEGDLFLTGSADK-----TVRVWQGSEDGNYD  301 (504)
Q Consensus       234 ~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~-s~~~~~l~s~s~dg-----~i~iwd~~~~~~~~  301 (504)
                      ++.+.++||.|      ..+..||..+.+-.. +..-...=..... .-+|.+.++||.||     +|-.||..+ ..|.
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~-~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT-NKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC-Cccc
Confidence            45788889888      346778877665322 2211111111111 12788888999886     477788776 3444


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCC------eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDN------TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      ....+.......-...+  +|...++||.++      ++..||..++.....-.-.   .. ..-..++ .-++.+.++|
T Consensus       410 ~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~---~~-R~~~g~a-~~~~~iYvvG  482 (571)
T KOG4441|consen  410 PVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN---TR-RSGFGVA-VLNGKIYVVG  482 (571)
T ss_pred             ccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc---cc-cccceEE-EECCEEEEEC
Confidence            44433222222222222  688888888655      4678888876543322210   11 1111122 2257888888


Q ss_pred             eCCCc-----EEEEEcCCCce--eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc------EEEEEcCCCc
Q 010669          376 TSEAL-----VKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAHDG------VKLWDLRKLK  431 (504)
Q Consensus       376 ~~dg~-----I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~------v~vwd~~~~~  431 (504)
                      +.|+.     |..||..+.+-  +..+......+-.+.+  ++...++|+.++      |..||..+.+
T Consensus       483 G~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  483 GFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             CccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence            88763     77788876542  3223323333333444  677777777662      6677765543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.74  E-value=0.62  Score=45.20  Aligned_cols=200  Identities=13%  Similarity=0.087  Sum_probs=95.6

Q ss_pred             cCCCCceEEEcccCcccee-----EEEEeeCCCEEE-EEeCCCc--EEEEeCCCCCCcceeEEeccCC-cCeEEEEEccC
Q 010669          251 DRPSGQIVTTLSGHSKKVT-----SVKFVTEGDLFL-TGSADKT--VRVWQGSEDGNYDCKHTLKDHT-AEVQAVTVHAT  321 (504)
Q Consensus       251 d~~~~~~~~~~~~h~~~v~-----~l~~s~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~p~  321 (504)
                      |..+|-.+..+........     .=+|.++|+.|+ .+..||.  +.+.|+.+    ..+..+.... .......++|+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t----~~i~QLTdg~g~~~~g~~~s~~   91 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT----GEITQLTDGPGDNTFGGFLSPD   91 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-----EEEE---SS-B-TTT-EE-TT
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc----CEEEECccCCCCCccceEEecC
Confidence            6677777777764433222     235677887655 4445665  44556665    3444444332 22335667788


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEE--CCCCCEEEEEe----------------------C
Q 010669          322 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF--HPDGLILGTGT----------------------S  377 (504)
Q Consensus       322 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~pdg~~l~~g~----------------------~  377 (504)
                      ++.++-......+.-.|+++.+....+...     ...+-...|  +.|+..++..-                      .
T Consensus        92 ~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-----~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p  166 (386)
T PF14583_consen   92 DRALYYVKNGRSLRRVDLDTLEERVVYEVP-----DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP  166 (386)
T ss_dssp             SSEEEEEETTTEEEEEETTT--EEEEEE-------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred             CCeEEEEECCCeEEEEECCcCcEEEEEECC-----cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence            888776666678999999998765555421     223333444  34566544321                      1


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCC-CcEEEEEeCC---cE--EEEEcCC-CcceeeeecCCCCCCeeEEEE
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSEN-GYYLATAAHD---GV--KLWDLRK-LKNFRSFESSDSETPTNSVDF  450 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~s~~~d---~v--~vwd~~~-~~~~~~~~~~~~~~~v~~i~~  450 (504)
                      ...|.-.|+++|+....+. ....+..+.|+|. ..+|+-|-++   .|  +||-+++ +...+.+..+.....+..=-|
T Consensus       167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw  245 (386)
T PF14583_consen  167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFW  245 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE
T ss_pred             CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccc
Confidence            1235556777776555554 4457889999995 4555555544   23  7776653 333333333322334555578


Q ss_pred             CCCCCEEEEE
Q 010669          451 DHSGSYLAVA  460 (504)
Q Consensus       451 ~~~g~~l~~~  460 (504)
                      .|||..|..-
T Consensus       246 ~~DG~~i~y~  255 (386)
T PF14583_consen  246 VPDGSTIWYD  255 (386)
T ss_dssp             -TTSS-EEEE
T ss_pred             cCCCCEEEEE
Confidence            9999877653

>PHA03098 kelch-like protein; Provisional

Probab=96.73  E-value=0.14  Score=53.43  Aligned_cols=202  Identities=13%  Similarity=0.138  Sum_probs=99.0

Q ss_pred             eCCCEEEEEeCCC------cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC-----CeEEEEECCCCe
Q 010669          275 TEGDLFLTGSADK------TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGI  343 (504)
Q Consensus       275 ~~~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~  343 (504)
                      .++..++.||.++      .+..||..+. .+.....+.........+.  -++..++.||.+     ..+..||..+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            3566777777543      4677887663 2322222211111122222  257778888765     347788887765


Q ss_pred             EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC------CcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEE
Q 010669          344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE------ALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLA  415 (504)
Q Consensus       344 ~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d------g~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~  415 (504)
                      -...-.   . .....-.+++ .-++++++.|+.+      +.+..||..+.+  .+..+.........+.  .++..++
T Consensus       370 W~~~~~---l-p~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv  442 (534)
T PHA03098        370 WREEPP---L-IFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYV  442 (534)
T ss_pred             eeeCCC---c-CcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--ECCEEEE
Confidence            332111   1 1111111222 2357777777732      458889987643  2211111111112222  2566666


Q ss_pred             EEeCC--------c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-------EEEEEeeccCccceeE
Q 010669          416 TAAHD--------G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-------IRVYQVASVKADWNCI  479 (504)
Q Consensus       416 s~~~d--------~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-------i~vw~~~~~~~~~~~i  479 (504)
                      .|+.+        . +.+||..+.+-...-...........+.+  ++.+++.||.+       +.+||.  .++.|..+
T Consensus       443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~~  518 (534)
T PHA03098        443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDD--KTNTWTLF  518 (534)
T ss_pred             ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeC--CCCEEEec
Confidence            66532        2 78889876542211111100111222223  56666777643       566665  34779888


Q ss_pred             EEccCCCCCCcee
Q 010669          480 KTFPDLSGTGAAS  492 (504)
Q Consensus       480 ~~~~~h~~~~~v~  492 (504)
                      ..++.+  .+.|.
T Consensus       519 ~~~p~~--~~~~~  529 (534)
T PHA03098        519 CKFPKV--IGSLE  529 (534)
T ss_pred             CCCccc--cccee
Confidence            877665  44443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.72  E-value=0.32  Score=43.19  Aligned_cols=209  Identities=11%  Similarity=0.098  Sum_probs=104.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC---CEEEEEeCCCeEEEEECCC--CeEEEEeecCC
Q 010669          278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN---KYFVTASLDNTWCFYDLSS--GICLTQVSDAG  352 (504)
Q Consensus       278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~  352 (504)
                      .++.+--..|.|.-||+.+...  ....+.+  .++.++.+--.+   .+.+.++..-.|.-||...  -....++....
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v--~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~  103 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKV--YRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ  103 (310)
T ss_pred             eEEEEEeccCceehhhhhhhhe--EEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence            3444444556666688776421  1122222  123333332222   2333333333344566332  22222222111


Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCC----------CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-
Q 010669          353 TDGRPEGYTSAAFHPDGLILGTGTSE----------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-  421 (504)
Q Consensus       353 ~~~~~~~v~~~~~~pdg~~l~~g~~d----------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-  421 (504)
                      ........+.-..+|+|+++ .|...          |.++.|-.  +..+..+...-+--+.++|+.+.+.+.....-+ 
T Consensus       104 ~d~kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~  180 (310)
T KOG4499|consen  104 PDRKKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNY  180 (310)
T ss_pred             chHHhcccccCccCCCCcee-eeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCce
Confidence            22234556777889999984 44322          23333332  112222222333456788988877766655444 


Q ss_pred             -EEEEE--cCCCcc-----eeeeecCC--CCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCce
Q 010669          422 -VKLWD--LRKLKN-----FRSFESSD--SETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAA  491 (504)
Q Consensus       422 -v~vwd--~~~~~~-----~~~~~~~~--~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v  491 (504)
                       |.-||  ..++..     +..+....  .....-.++++.+|++.++.-+..+|+.++.  .+++.+..+.-.  +..|
T Consensus       181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp--~tGK~L~eiklP--t~qi  256 (310)
T KOG4499|consen  181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP--TTGKILLEIKLP--TPQI  256 (310)
T ss_pred             EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC--CCCcEEEEEEcC--CCce
Confidence             76677  444432     22221100  1123345677888887776666655555543  568888877665  7788


Q ss_pred             eEEEEe
Q 010669          492 SFLFLF  497 (504)
Q Consensus       492 ~~l~~~  497 (504)
                      ++++|-
T Consensus       257 tsccFg  262 (310)
T KOG4499|consen  257 TSCCFG  262 (310)
T ss_pred             EEEEec
Confidence            998885

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.69  E-value=0.024  Score=55.79  Aligned_cols=144  Identities=16%  Similarity=0.221  Sum_probs=95.0

Q ss_pred             CCCE-EEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC-------EEEEEeCCCcEEEEeCCCCCCcceeEE
Q 010669          234 SKDV-IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-------LFLTGSADKTVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       234 ~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-------~l~s~s~dg~i~iwd~~~~~~~~~~~~  305 (504)
                      +.++ |.++.....++-.|++.|+.+...+-+.. |+-+.+.|+.+       .-+.|-.|..|.-||++-.+. ..+..
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~  421 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAV  421 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeee
Confidence            3444 34455556688889999999999987766 77788877654       234566788899999875432 11222


Q ss_pred             eccCC----cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          306 LKDHT----AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       306 ~~~h~----~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      .++|.    ....|++-. ...+|++||.+|.|++||- .+..-++.    ..+-..+|..+..+.||+++++.+ +..+
T Consensus       422 ~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTA----lPgLG~~I~hVdvtadGKwil~Tc-~tyL  494 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTA----LPGLGDAIKHVDVTADGKWILATC-KTYL  494 (644)
T ss_pred             eeccccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhc----ccccCCceeeEEeeccCcEEEEec-ccEE
Confidence            22221    223444444 3448999999999999997 34333322    224457899999999999887655 4556


Q ss_pred             EEEEc
Q 010669          382 KIWDV  386 (504)
Q Consensus       382 ~iwd~  386 (504)
                      .+.|+
T Consensus       495 lLi~t  499 (644)
T KOG2395|consen  495 LLIDT  499 (644)
T ss_pred             EEEEE
Confidence            66665

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.69  E-value=0.74  Score=45.42  Aligned_cols=146  Identities=8%  Similarity=0.122  Sum_probs=82.4

Q ss_pred             CeEEEEeccCCCEEEEEe-----------CCC-cEEEEcCCC--Cc--eEEEcccCccceeEEEEeeCCCEEEEEeCCCc
Q 010669          225 GIVSLDIHYSKDVIATGG-----------VDT-NAVLFDRPS--GQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT  288 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~-----------~dg-~i~vwd~~~--~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~  288 (504)
                      ....|+|.++|+++++-.           ..+ .|.+++-.+  |+  ....+.........+++.+++ +++ ++....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence            356889999999877642           223 677776432  32  233443334456889998888 444 444443


Q ss_pred             EEEEeCCCCCC----ccee-EEecc----CCcCeEEEEEccCCCEEEEEeCC-------------------CeEEEEECC
Q 010669          289 VRVWQGSEDGN----YDCK-HTLKD----HTAEVQAVTVHATNKYFVTASLD-------------------NTWCFYDLS  340 (504)
Q Consensus       289 i~iwd~~~~~~----~~~~-~~~~~----h~~~v~~l~~~p~~~~l~s~s~d-------------------g~i~iwd~~  340 (504)
                      .++.|....+.    .+.+ ..+..    +......+.|.|+|.+.++.+..                   |.|.-+|..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            34445543221    1112 12222    12447789999999876655421                   445556665


Q ss_pred             CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          341 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                      +++.. .+. .   + -.....++|+++|.++++-..+
T Consensus       173 g~~~e-~~a-~---G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       173 GGKLR-VVA-H---G-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCeEE-EEe-c---C-cCCCccceECCCCCEEEEccCC
Confidence            54432 221 1   2 1335689999999988775433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.0013  Score=65.44  Aligned_cols=52  Identities=27%  Similarity=0.434  Sum_probs=48.1

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      +-|+...+|++||+=|.||.+-.|..|..|+-.-|+||+++.||++||.+|=
T Consensus       856 lDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn  907 (929)
T COG5113         856 LDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPN  907 (929)
T ss_pred             hCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCC
Confidence            3567788999999999999999999999999999999999999999998765

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.34  Score=50.18  Aligned_cols=224  Identities=13%  Similarity=0.112  Sum_probs=112.9

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      .++..++..+|..-.=+ .+.-..|+||+.. |..+..+.-..+.+..+.|+.+. .|++...||++.+|++..... ..
T Consensus        43 ~gGpIAV~r~p~~~~~~-~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~i-e~  118 (829)
T KOG2280|consen   43 FGGPIAVTRSPSKLVPL-YSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFI-ES  118 (829)
T ss_pred             cCCceEEEecccccccc-cccceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhh-cc
Confidence            44555666666322111 1334568888864 67666665555588999998655 466678999999999865311 11


Q ss_pred             e-EEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC---CEEEEEe-C
Q 010669          303 K-HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG---LILGTGT-S  377 (504)
Q Consensus       303 ~-~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg---~~l~~g~-~  377 (504)
                      . .-+......|..+.+..+|-.++  ..+|.+.+-.-........+...  ......-+|-...+++   ..++-.. .
T Consensus       119 ~svg~e~~~~~I~ec~~f~~GVavl--t~~g~v~~i~~~~~~~~~~~~di--P~~~~~~~~Wt~~~~~~~~~~ll~v~~~  194 (829)
T KOG2280|consen  119 NSVGFESQMSDIVECRFFHNGVAVL--TVSGQVILINGVEEPKLRKMPDI--PYNELPKSCWTVFQPHRQSTILLDVDVA  194 (829)
T ss_pred             cccccccccCceeEEEEecCceEEE--ecCCcEEEEcCCCcchhhhCCCC--CCccCCCcceeEecCCCcceeEEeechh
Confidence            0 00111222344444443553333  34555544332222122222210  0111111222222221   1111111 1


Q ss_pred             CCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          378 EALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       378 dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      .| ..++-...+ .....+....+.+..+..||++.+|+--...| |.+-+....+....+....+ .....++|.-+..
T Consensus       195 v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgnda  272 (829)
T KOG2280|consen  195 VG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCGNDA  272 (829)
T ss_pred             hh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeecCCc
Confidence            11 111111111 11222332346788899999999999998888 88888777777766665432 2334677765553


Q ss_pred             E
Q 010669          456 Y  456 (504)
Q Consensus       456 ~  456 (504)
                      .
T Consensus       273 V  273 (829)
T KOG2280|consen  273 V  273 (829)
T ss_pred             e
Confidence            3

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.002  Score=68.27  Aligned_cols=51  Identities=31%  Similarity=0.450  Sum_probs=48.2

Q ss_pred             cccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            3 CSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      -||.+.+|.+||+=|.||++=+|..|+.|+...++||++++||++++++|-
T Consensus       873 DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn  923 (943)
T KOG2042|consen  873 DPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPN  923 (943)
T ss_pred             CccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCC
Confidence            478999999999999999999999999999999999999999999999765

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.66  E-value=0.00044  Score=47.22  Aligned_cols=49  Identities=31%  Similarity=0.497  Sum_probs=26.7

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIV   51 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~   51 (504)
                      |-|++++..+++||..-.+.|+|+..+|.+.+..  .||++..|-.+.|+.
T Consensus         8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~   56 (65)
T PF14835_consen    8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQ   56 (65)
T ss_dssp             TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS--
T ss_pred             cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHH
Confidence            5699999999999975589999999999887663  399999999988873

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.64  E-value=0.11  Score=52.11  Aligned_cols=174  Identities=13%  Similarity=0.066  Sum_probs=99.0

Q ss_pred             cCeEEEEEccCCCEEEEEe---CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC----CCEEEEEeCCCcEEE
Q 010669          311 AEVQAVTVHATNKYFVTAS---LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD----GLILGTGTSEALVKI  383 (504)
Q Consensus       311 ~~v~~l~~~p~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd----g~~l~~g~~dg~I~i  383 (504)
                      .++.+++|. ||+.++-..   .+|.+++=|   .+.+         +....|..+.|.|-    ..-+++......|.|
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi---------GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtV   86 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI---------GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTV   86 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe---------eccceeeeeeecCcccCCCCceEEEeccceEEE
Confidence            468899998 666544332   233333322   1122         22346899999994    323444456778999


Q ss_pred             EEcCC-----CceeeeeeCC---CC--CeEEEEEcCCCcEEEEEeCCcE-EEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          384 WDVKS-----QANVAKFDGH---VG--AVTAISFSENGYYLATAAHDGV-KLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       384 wd~~~-----~~~~~~~~~~---~~--~i~~l~~s~~g~~l~s~~~d~v-~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      |.+.-     ++.+..-..+   .-  -...+.|+|....|++-....+ .+++++........+. ...+.|.+.+|.+
T Consensus        87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~  165 (671)
T PF15390_consen   87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTK  165 (671)
T ss_pred             EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecC
Confidence            99852     2222211111   11  2245779999999888877763 4566664433333333 2257899999999


Q ss_pred             CCCEEEEEeCc---EEEEEeeccCcccee---EEEccCCCCCCceeEEEEeecCccc
Q 010669          453 SGSYLAVASAD---IRVYQVASVKADWNC---IKTFPDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       453 ~g~~l~~~~~d---i~vw~~~~~~~~~~~---i~~~~~h~~~~~v~~l~~~~~g~~~  503 (504)
                      ||+.|+++-..   -+|||-  ..++...   --.|+-   .+.|.+|....+.|+|
T Consensus       166 DG~RLVVAvGSsLHSyiWd~--~qKtL~~CsfcPVFdv---~~~Icsi~AT~dsqVA  217 (671)
T PF15390_consen  166 DGQRLVVAVGSSLHSYIWDS--AQKTLHRCSFCPVFDV---GGYICSIEATVDSQVA  217 (671)
T ss_pred             cCCEEEEEeCCeEEEEEecC--chhhhhhCCcceeecC---CCceEEEEEeccceEE
Confidence            99988877555   566653  2222111   112222   4567777666666654

>PHA03098 kelch-like protein; Provisional

Probab=96.62  E-value=0.21  Score=52.10  Aligned_cols=186  Identities=14%  Similarity=0.173  Sum_probs=93.5

Q ss_pred             cCCCEEEEEeCCC------cEEEEcCCCCceEEEccc---CccceeEEEEeeCCCEEEEEeCC-----CcEEEEeCCCCC
Q 010669          233 YSKDVIATGGVDT------NAVLFDRPSGQIVTTLSG---HSKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDG  298 (504)
Q Consensus       233 ~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~s~d-----g~i~iwd~~~~~  298 (504)
                      .++.+++.||.++      .+..||..+.+.. .+..   .......+  .-++.+++.||.+     ..+..||..+. 
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-  368 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGES-  368 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCC-
Confidence            3566777777543      4677887765542 2221   11111222  2267777788765     35677887763 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCC------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      .|.....+...... .+++. -++..++.||.+      ..+..||..+++-...-.   ...... -.+++ ..++.++
T Consensus       369 ~W~~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~-~~~~~-~~~~~iy  441 (534)
T PHA03098        369 KWREEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP---LPISHY-GGCAI-YHDGKIY  441 (534)
T ss_pred             ceeeCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC---CCcccc-CceEE-EECCEEE
Confidence            34333222211111 12222 256777777732      358889988765432211   101111 11222 2356777


Q ss_pred             EEEeCCC--------cEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-----c-EEEEEcCCCc
Q 010669          373 GTGTSEA--------LVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKLK  431 (504)
Q Consensus       373 ~~g~~dg--------~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-----~-v~vwd~~~~~  431 (504)
                      +.|+.++        .+.+||..+++  .+..+.........+.+  ++.+++.|+.+     . |.+||..+.+
T Consensus       442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            7776432        38889987653  22222111111222333  67777777654     2 7888877643

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.60  E-value=0.00091  Score=64.91  Aligned_cols=47  Identities=21%  Similarity=0.349  Sum_probs=42.0

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh----cC-CCCCCCCCCCCCc
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILD----YG-KCPVTGEPLTMDD   49 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~p~~~~~~~~~~   49 (504)
                      .|.|+-++.++|++| +|.|+|||-||.+|+..    +| +||.|-.+|++|+
T Consensus       538 ~C~lc~d~aed~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl  589 (791)
T KOG1002|consen  538 ECGLCHDPAEDYIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL  589 (791)
T ss_pred             eecccCChhhhhHhh-hhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence            599999999999999 69999999999999873    23 6999999999884

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.54  E-value=1.3  Score=47.72  Aligned_cols=198  Identities=11%  Similarity=0.147  Sum_probs=116.6

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCccc--------eeEEEEee----------------CCCEEEEEeCCCcEE
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK--------VTSVKFVT----------------EGDLFLTGSADKTVR  290 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~--------v~~l~~s~----------------~~~~l~s~s~dg~i~  290 (504)
                      +..|+.++.++.|.-.|..+|+.+-.+......        ...+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567777788899999999999988776532211        12233321                234788888999999


Q ss_pred             EEeCCCCCCcceeEEeccCCcCeE-------------EEEEcc--CCCEEEEEeC----------CCeEEEEECCCCeEE
Q 010669          291 VWQGSEDGNYDCKHTLKDHTAEVQ-------------AVTVHA--TNKYFVTASL----------DNTWCFYDLSSGICL  345 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~~h~~~v~-------------~l~~~p--~~~~l~s~s~----------dg~i~iwd~~~~~~~  345 (504)
                      -.|..++   +....+. ..+.|.             .+.-.|  .+..+++|+.          +|.|+-+|.++|+..
T Consensus       274 ALDA~TG---k~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       274 ALDADTG---KLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             EEECCCC---CEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            9998886   3333321 111110             111112  2445666643          688999999999988


Q ss_pred             EEeecCCCC-------------CCCCCeEEEEECCCCCEEEEEe------------------CCCcEEEEEcCCCceeee
Q 010669          346 TQVSDAGTD-------------GRPEGYTSAAFHPDGLILGTGT------------------SEALVKIWDVKSQANVAK  394 (504)
Q Consensus       346 ~~~~~~~~~-------------~~~~~v~~~~~~pdg~~l~~g~------------------~dg~I~iwd~~~~~~~~~  394 (504)
                      -.+......             +....-...+++++..+++.+.                  ..+.|.-.|.++++..-.
T Consensus       350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~  429 (764)
T TIGR03074       350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV  429 (764)
T ss_pred             eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence            776532110             0001113455666555544432                  124566678888887766


Q ss_pred             eeC-CC--------CCeEEEEEcC-CCc---EEEEEeCCc-EEEEEcCCCcceeee
Q 010669          395 FDG-HV--------GAVTAISFSE-NGY---YLATAAHDG-VKLWDLRKLKNFRSF  436 (504)
Q Consensus       395 ~~~-~~--------~~i~~l~~s~-~g~---~l~s~~~d~-v~vwd~~~~~~~~~~  436 (504)
                      +.. |.        ....-+.+.. +|.   .++.++.+| ++++|-++++.+...
T Consensus       430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            653 21        1111122322 553   788888888 999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.51  E-value=0.075  Score=55.05  Aligned_cols=110  Identities=13%  Similarity=0.165  Sum_probs=74.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee-CCCCCeEEEEEc--CCCcEEEEEeCCc-EEEEEcC-------
Q 010669          360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFS--ENGYYLATAAHDG-VKLWDLR-------  428 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s--~~g~~l~s~~~d~-v~vwd~~-------  428 (504)
                      ..-+.-+.-++..++.+....+.|||.+.+.....-. ...+.|.++.|.  |+|..+++.+-.. |.+|--.       
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            3444444455555555556689999999887443322 346789999986  4788777777776 8777431       


Q ss_pred             --CCcceeeeecCCC-CCCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669          429 --KLKNFRSFESSDS-ETPTNSVDFDHSGSYLAVASADIRVYQV  469 (504)
Q Consensus       429 --~~~~~~~~~~~~~-~~~v~~i~~~~~g~~l~~~~~di~vw~~  469 (504)
                        +...++.+....+ ..+|.+..|-++|.+++++|+.+.||+-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence              1223455544333 3689999999999988888887999874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.45  E-value=0.01  Score=38.70  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=29.9

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI  257 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~  257 (504)
                      ...|.+++|+|..++||.|..+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999998 4443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.45  E-value=0.01  Score=52.12  Aligned_cols=104  Identities=12%  Similarity=0.134  Sum_probs=62.8

Q ss_pred             CCEEEEEeCCCcEEEEcCCCC-ceEEEcccCccceeEEE-EeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCC-c
Q 010669          235 KDVIATGGVDTNAVLFDRPSG-QIVTTLSGHSKKVTSVK-FVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT-A  311 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~-~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~  311 (504)
                      +.-+++|+.+|.|++|+.... .....+..-...|.++. --.++.+.++++.||.|+.|++.-.   +.+.....|+ .
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~---k~~g~~g~h~~~  146 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN---KVLGYVGQHNFE  146 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC---ceeeeeccccCC
Confidence            457888999999999987621 21112222222333322 2235568899999999999998764   4444444565 4


Q ss_pred             CeEEEEEccCCCEEEEE--eCCCeEEEEECCC
Q 010669          312 EVQAVTVHATNKYFVTA--SLDNTWCFYDLSS  341 (504)
Q Consensus       312 ~v~~l~~~p~~~~l~s~--s~dg~i~iwd~~~  341 (504)
                      ++........+..+.++  |.|..++.|++..
T Consensus       147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            44444444455556655  6666666666553

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.43  E-value=0.042  Score=58.93  Aligned_cols=147  Identities=16%  Similarity=0.108  Sum_probs=91.7

Q ss_pred             CeEEEEEccCCCEEEE--EeCCCeEEEEECCCCeEEEEeecC------CCCCCCCCeEEEEECCC-CCEEEEEeCCCcEE
Q 010669          312 EVQAVTVHATNKYFVT--ASLDNTWCFYDLSSGICLTQVSDA------GTDGRPEGYTSAAFHPD-GLILGTGTSEALVK  382 (504)
Q Consensus       312 ~v~~l~~~p~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~v~~~~~~pd-g~~l~~g~~dg~I~  382 (504)
                      ++..+...+|+...++  .+.+-.|..||+++-.........      ..........++.|+|. ....++...|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            4555555667654433  334447899999764322211100      00112234678889983 34567778899999


Q ss_pred             EEEcCCCce-eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCC--CCCeeEEEECCCCCEEE
Q 010669          383 IWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS--ETPTNSVDFDHSGSYLA  458 (504)
Q Consensus       383 iwd~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~--~~~v~~i~~~~~g~~l~  458 (504)
                      +..+..... +..+. .....++++|+|.|..++.|..+| +.-|.. .+.....+.....  ...|.+++|-....+++
T Consensus       182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            988754432 22333 445789999999999999999998 766654 3443344433221  46799999988877777


Q ss_pred             EE
Q 010669          459 VA  460 (504)
Q Consensus       459 ~~  460 (504)
                      +-
T Consensus       260 vy  261 (1405)
T KOG3630|consen  260 VY  261 (1405)
T ss_pred             Ee
Confidence            54

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.40  E-value=0.82  Score=42.45  Aligned_cols=147  Identities=14%  Similarity=0.094  Sum_probs=87.9

Q ss_pred             ceeEEEEeeCCCEEEEEe---CCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEE-CCCC
Q 010669          267 KVTSVKFVTEGDLFLTGS---ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD-LSSG  342 (504)
Q Consensus       267 ~v~~l~~s~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd-~~~~  342 (504)
                      .+.+.+++++++.++...   ....+.++....  .  ....+.  ...+..-.|.+++...+....+....++. ...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~--~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--P--VRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--c--ceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence            688999999998766554   333455554332  1  112222  23677888999987777666666666663 3333


Q ss_pred             eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe---CCCcEEEEEcC---CC------ceeeeeeCCCCCeEEEEEcCC
Q 010669          343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVK---SQ------ANVAKFDGHVGAVTAISFSEN  410 (504)
Q Consensus       343 ~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~---~dg~I~iwd~~---~~------~~~~~~~~~~~~i~~l~~s~~  410 (504)
                      ......... . .....|+.+.++|||..++.-.   .++.|.+--+.   .+      ............++.+.|.++
T Consensus        99 ~~~~~~v~~-~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen   99 TGEPVEVDW-P-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             cceeEEecc-c-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            322211111 0 1112799999999999877765   35777776553   22      111122223468999999999


Q ss_pred             CcEEEEEeCCc
Q 010669          411 GYYLATAAHDG  421 (504)
Q Consensus       411 g~~l~s~~~d~  421 (504)
                      +.+++.+...+
T Consensus       177 ~~L~V~~~~~~  187 (253)
T PF10647_consen  177 STLVVLGRSAG  187 (253)
T ss_pred             CEEEEEeCCCC
Confidence            98877776553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.36  E-value=0.0078  Score=62.65  Aligned_cols=174  Identities=13%  Similarity=0.189  Sum_probs=97.9

Q ss_pred             cccCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCC--CCceEE-----EcccCccceeEEEEee---CCCEEEEEeCC
Q 010669          218 LHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRP--SGQIVT-----TLSGHSKKVTSVKFVT---EGDLFLTGSAD  286 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~--~~~~~~-----~~~~h~~~v~~l~~s~---~~~~l~s~s~d  286 (504)
                      +.++-.++|-.+.|... ...+.  -.-|.+.||++.  .|+...     ....-...+.-+.|.|   +.-++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            34455666777776431 11221  234678889864  344322     2222333445566665   55678888889


Q ss_pred             CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEEC
Q 010669          287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH  366 (504)
Q Consensus       287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  366 (504)
                      ++|++.++...    ....+.+|...+..++|...|-..+.                                    .++
T Consensus       205 ~~i~lL~~~ra----~~~l~rsHs~~~~d~a~~~~g~~~l~------------------------------------~lS  244 (1283)
T KOG1916|consen  205 GEIRLLNINRA----LRSLFRSHSQRVTDMAFFAEGVLKLA------------------------------------SLS  244 (1283)
T ss_pred             CceeEeeechH----HHHHHHhcCCCcccHHHHhhchhhhe------------------------------------eeC
Confidence            99998887663    22445568888877776543321111                                    056


Q ss_pred             CCCCEEEEEeCCCcEEEEEc-----CCCceeeeeeCCC-CCeEEEEEcCC-------C--cEEEEEeCCc--EEEEEcCC
Q 010669          367 PDGLILGTGTSEALVKIWDV-----KSQANVAKFDGHV-GAVTAISFSEN-------G--YYLATAAHDG--VKLWDLRK  429 (504)
Q Consensus       367 pdg~~l~~g~~dg~I~iwd~-----~~~~~~~~~~~~~-~~i~~l~~s~~-------g--~~l~s~~~d~--v~vwd~~~  429 (504)
                      |||..|+..+.||.+++|.+     +...++...+.|. .+-.|.-|..+       |  .+++++++-+  +++|....
T Consensus       245 pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~  324 (1283)
T KOG1916|consen  245 PDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP  324 (1283)
T ss_pred             CCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence            66666666666766666554     2334555566665 33333333322       2  2445555443  99999887


Q ss_pred             Ccce
Q 010669          430 LKNF  433 (504)
Q Consensus       430 ~~~~  433 (504)
                      .+++
T Consensus       325 w~Cl  328 (1283)
T KOG1916|consen  325 WQCL  328 (1283)
T ss_pred             hhhh
Confidence            7776

>PHA02790 Kelch-like protein; Provisional

Probab=96.34  E-value=0.32  Score=49.90  Aligned_cols=182  Identities=13%  Similarity=0.102  Sum_probs=91.0

Q ss_pred             CCCEEEEEeCCC-----cEEEEcCCCCceEEE--cccCccceeEEEEeeCCCEEEEEeCC--CcEEEEeCCCCCCcceeE
Q 010669          234 SKDVIATGGVDT-----NAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSAD--KTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       234 ~~~~l~sg~~dg-----~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~  304 (504)
                      ++.++++||.++     .+..||..++.-...  +.........+  .-++.+.+.||.+  .++..||..+ +.|....
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~-n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGD-AAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCC-CeEEECC
Confidence            455667777543     466788776543221  11111111122  2367777777754  3577888765 3343333


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCCC---eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLDN---TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      .+.........+.  -+|+..+.||.++   .+..||.+++.-...-.   . .....-.+++ .-+|++.+.|+   .+
T Consensus       348 ~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~---m-~~~r~~~~~~-~~~~~IYv~GG---~~  417 (480)
T PHA02790        348 SLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS---T-YYPHYKSCAL-VFGRRLFLVGR---NA  417 (480)
T ss_pred             CCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC---C-CCccccceEE-EECCEEEEECC---ce
Confidence            3321111112222  2677778887654   47788887765432211   1 1111111222 23577777774   57


Q ss_pred             EEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-----c-EEEEEcCCC
Q 010669          382 KIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKL  430 (504)
Q Consensus       382 ~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-----~-v~vwd~~~~  430 (504)
                      .+||.++++  .+..+.........+.+  +|.+.+.|+.+     . |..||..+.
T Consensus       418 e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        418 EFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             EEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence            789987643  22222211222223333  67777777643     2 666776653

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.30  E-value=1.2  Score=43.28  Aligned_cols=238  Identities=16%  Similarity=0.186  Sum_probs=115.0

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCce---EEEc----ccCccceeEEEEeeC---CCEEEEEeC-C--------
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI---VTTL----SGHSKKVTSVKFVTE---GDLFLTGSA-D--------  286 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~---~~~~----~~h~~~v~~l~~s~~---~~~l~s~s~-d--------  286 (504)
                      -++|+|.|+|+++++ ...|.|.+++ ..+..   +..+    .........++++|+   ..+|+.... .        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            478999999988775 5699999999 34433   3333    234456899999984   233333322 1        


Q ss_pred             CcEEEEeCCCC-CC---ccee-EEecc---CCcCeEEEEEccCCCEEEEEeCCCe---EEEEECCCCeEEEEeecCCC--
Q 010669          287 KTVRVWQGSED-GN---YDCK-HTLKD---HTAEVQAVTVHATNKYFVTASLDNT---WCFYDLSSGICLTQVSDAGT--  353 (504)
Q Consensus       287 g~i~iwd~~~~-~~---~~~~-~~~~~---h~~~v~~l~~~p~~~~l~s~s~dg~---i~iwd~~~~~~~~~~~~~~~--  353 (504)
                      ..|.-|..... ..   .+.+ ..+..   ....-..|.|.|+|.++++.+..+.   ..-.+...++.+. +...+.  
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilr-i~~dG~~p  160 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILR-IDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEE-EETTSSB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEE-ecccCcCC
Confidence            13333433322 01   0111 11111   2234567999999987776655332   0000001122221 111000  


Q ss_pred             --------CCCC--------CCeEEEEECCC-CCEEEEE-eCCCcEEEEEcCCCc-------------------------
Q 010669          354 --------DGRP--------EGYTSAAFHPD-GLILGTG-TSEALVKIWDVKSQA-------------------------  390 (504)
Q Consensus       354 --------~~~~--------~~v~~~~~~pd-g~~l~~g-~~dg~I~iwd~~~~~-------------------------  390 (504)
                              ....        .....++|+|. |.++++= +.++.=.|.-+..+.                         
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~  240 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP  240 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred             CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence                    0001        12457899998 7766542 222222222222211                         


Q ss_pred             ----eeeeeeCCCCCeEEEEEcC-------CCcEEEEEeCCc-EEEEEcCCCcceee-eec-CCCCCCeeEEEECCCCCE
Q 010669          391 ----NVAKFDGHVGAVTAISFSE-------NGYYLATAAHDG-VKLWDLRKLKNFRS-FES-SDSETPTNSVDFDHSGSY  456 (504)
Q Consensus       391 ----~~~~~~~~~~~i~~l~~s~-------~g~~l~s~~~d~-v~vwd~~~~~~~~~-~~~-~~~~~~v~~i~~~~~g~~  456 (504)
                          ++..+. +...++.+.|..       .|.+|++.-..+ |....+.....+.. -.. ......+..+++.|||.+
T Consensus       241 ~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L  319 (331)
T PF07995_consen  241 GFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL  319 (331)
T ss_dssp             TS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred             CcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence                222233 335677787764       345666555444 77777764432221 111 222347899999999998


Q ss_pred             EEEEeCcEEEE
Q 010669          457 LAVASADIRVY  467 (504)
Q Consensus       457 l~~~~~di~vw  467 (504)
                      .++...+..||
T Consensus       320 yv~~d~~G~iy  330 (331)
T PF07995_consen  320 YVSDDSDGKIY  330 (331)
T ss_dssp             EEEE-TTTTEE
T ss_pred             EEEECCCCeEe
Confidence            88877665555

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.27  E-value=0.006  Score=44.26  Aligned_cols=41  Identities=29%  Similarity=0.523  Sum_probs=32.0

Q ss_pred             ccccCCCCCC------------CceEeCCCCeeeeHHHHHHHHHhcCCCCCCC
Q 010669            2 NCSISGEVPE------------EPVVSKNSGLLFEKRLIERHILDYGKCPVTG   42 (504)
Q Consensus         2 ~c~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~   42 (504)
                      .|+|+.+...            -|++...+||.|=..+|++|++.+.+||+++
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            3888877772            3455556999999999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.21  E-value=0.02  Score=37.30  Aligned_cols=34  Identities=15%  Similarity=0.324  Sum_probs=30.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce
Q 010669          357 PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN  391 (504)
Q Consensus       357 ~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~  391 (504)
                      ...|.+++|+|...++|.|+.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999998 5543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.21  E-value=1.5  Score=43.54  Aligned_cols=88  Identities=15%  Similarity=0.191  Sum_probs=56.5

Q ss_pred             EEEeccCCCEEEEEeCCCcEEE---EcCC-----CCceEEE----cccC-ccceeEEEEee-----------CCCEEEEE
Q 010669          228 SLDIHYSKDVIATGGVDTNAVL---FDRP-----SGQIVTT----LSGH-SKKVTSVKFVT-----------EGDLFLTG  283 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~~dg~i~v---wd~~-----~~~~~~~----~~~h-~~~v~~l~~s~-----------~~~~l~s~  283 (504)
                      .++.+|++++|+.+..+..+.+   |+..     .+.....    +... ...|+++.|-|           |...++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4678899999999987776655   5331     1112111    1211 15688887754           24578999


Q ss_pred             eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEc
Q 010669          284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH  319 (504)
Q Consensus       284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~  319 (504)
                      ..+|.|++|....    ..+..-.-|..+|..+.+.
T Consensus        86 ~ssG~vrfyte~G----~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYTENG----VLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEeccc----hHHHHHhcCccceEEEEec
Confidence            9999999998643    3333334577788877764

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.20  E-value=0.73  Score=45.66  Aligned_cols=82  Identities=22%  Similarity=0.346  Sum_probs=57.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEE-EEEcCC-----------------CcEEEE-Ee
Q 010669          358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTA-ISFSEN-----------------GYYLAT-AA  418 (504)
Q Consensus       358 ~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~-----------------g~~l~s-~~  418 (504)
                      ..+.+++.+|++++.++...-|.|.++|+.++..++.++|....=.. +.....                 ..+|+. +-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            34678999999999999888899999999999888888875442111 111100                 123333 34


Q ss_pred             CCc-EEEEEcCCCcceeeeecC
Q 010669          419 HDG-VKLWDLRKLKNFRSFESS  439 (504)
Q Consensus       419 ~d~-v~vwd~~~~~~~~~~~~~  439 (504)
                      ..| |.||+++.+..+..+...
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEEeC
Confidence            456 999999999888777654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.17  E-value=0.12  Score=55.70  Aligned_cols=145  Identities=9%  Similarity=-0.019  Sum_probs=88.8

Q ss_pred             ceeEEEEeeCCCEE--EEEeCCCcEEEEeCCCCCCc--ceeEEec------cCCcCeEEEEEccCCC-EEEEEeCCCeEE
Q 010669          267 KVTSVKFVTEGDLF--LTGSADKTVRVWQGSEDGNY--DCKHTLK------DHTAEVQAVTVHATNK-YFVTASLDNTWC  335 (504)
Q Consensus       267 ~v~~l~~s~~~~~l--~s~s~dg~i~iwd~~~~~~~--~~~~~~~------~h~~~v~~l~~~p~~~-~l~s~s~dg~i~  335 (504)
                      +|..+...+|+...  +..+.+-.|..||+..-...  .....+.      .......++.|+|.-. ..+.+..|+.|.
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45555556676643  33344457889998753211  1111111      2223456788888643 456677888888


Q ss_pred             EEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC----CCCCeEEEEEcCCC
Q 010669          336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG----HVGAVTAISFSENG  411 (504)
Q Consensus       336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~g  411 (504)
                      +..+........-.     ......+|++|+|.|+.+++|-.+|++.-|-.. .+....+.+    ....|.+|+|-...
T Consensus       182 V~~~~~~~~~v~s~-----p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSF-----PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             hhhhhhhhhhhccc-----CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence            87665332211111     223568999999999999999999999888653 222222221    24689999998877


Q ss_pred             cEEEEE
Q 010669          412 YYLATA  417 (504)
Q Consensus       412 ~~l~s~  417 (504)
                      .++++-
T Consensus       256 eflvvy  261 (1405)
T KOG3630|consen  256 EFLVVY  261 (1405)
T ss_pred             eEEEEe
Confidence            777654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.15  E-value=0.45  Score=46.95  Aligned_cols=152  Identities=14%  Similarity=0.160  Sum_probs=82.9

Q ss_pred             cceeEEEEeeCCCEEEEEe-----------CCC-cEEEEeCCC-CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC
Q 010669          266 KKVTSVKFVTEGDLFLTGS-----------ADK-TVRVWQGSE-DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN  332 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~s~s-----------~dg-~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg  332 (504)
                      .....|+|.++|+++++-.           ..+ .|.+++-.. .+.......+...-.....+++.+++  +++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            3467788888888766642           223 676665332 23333334444334456889999888  44444444


Q ss_pred             eEEEEECCCC-----eEEEEeecCCCC--CCCCCeEEEEECCCCCEEEEEeCC-------------------CcEEEEEc
Q 010669          333 TWCFYDLSSG-----ICLTQVSDAGTD--GRPEGYTSAAFHPDGLILGTGTSE-------------------ALVKIWDV  386 (504)
Q Consensus       333 ~i~iwd~~~~-----~~~~~~~~~~~~--~~~~~v~~~~~~pdg~~l~~g~~d-------------------g~I~iwd~  386 (504)
                      .+++.|....     +....+......  .+......++|.|||.+.++-+..                   |.|.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3344455321     111112211111  123457789999999877654421                   34555555


Q ss_pred             CCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC
Q 010669          387 KSQANVAKFDGHVGAVTAISFSENGYYLATAAHD  420 (504)
Q Consensus       387 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d  420 (504)
                      ..++. ..+.........++|+++|.++++-..+
T Consensus       172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence            44432 2222222345789999999888765544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.14  E-value=0.91  Score=40.44  Aligned_cols=138  Identities=12%  Similarity=0.119  Sum_probs=85.7

Q ss_pred             cceeEEEEeeCCCEEEEEeCC---------CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEE-EEeCCCeEE
Q 010669          266 KKVTSVKFVTEGDLFLTGSAD---------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWC  335 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~-s~s~dg~i~  335 (504)
                      ...+.-..+|+|+++.-.-.|         |.++.|-...     .+..+...-+.-+.++|+.+.+.+. +-+.+-.|.
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-----~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-----QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccCC-----CceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence            445666778999884322222         3445553322     1111222223446788887766544 455677787


Q ss_pred             EEE--CCCCe-----EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEc
Q 010669          336 FYD--LSSGI-----CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS  408 (504)
Q Consensus       336 iwd--~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s  408 (504)
                      -||  ..+|.     .+..+....... ....-.+++..+|+++++.-+.|+|.-+|..+|+.+.+++-....|++++|-
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e-~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFE-SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcC-CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            787  55543     233333211111 1122345667789999999999999999999999999998888899999995


Q ss_pred             C
Q 010669          409 E  409 (504)
Q Consensus       409 ~  409 (504)
                      -
T Consensus       263 G  263 (310)
T KOG4499|consen  263 G  263 (310)
T ss_pred             C
Confidence            3

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.07  E-value=1.1  Score=40.89  Aligned_cols=225  Identities=12%  Similarity=0.080  Sum_probs=139.5

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      .-..++-++||..-+++...|.|--.|..+|+....--+....-..|..-|||..-++-+.. -|.-.|.++........
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l  141 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence            44577888999988999888888888999998766655555666778888888766554433 34445554422111111


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW  384 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iw  384 (504)
                      ....-........|.+.|++-+++.. |.---.|-.++ .+..+..    .....-+.++..|||...++.-.+..|-..
T Consensus       142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpa----PqG~gpyGi~atpdGsvwyaslagnaiari  215 (353)
T COG4257         142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPA----PQGGGPYGICATPDGSVWYASLAGNAIARI  215 (353)
T ss_pred             ccccCCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeecc----CCCCCCcceEECCCCcEEEEeccccceEEc
Confidence            11223456778889999998888753 21111122111 1111211    112346778899999998888888888888


Q ss_pred             EcCCCceeeeee---CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669          385 DVKSQANVAKFD---GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA  458 (504)
Q Consensus       385 d~~~~~~~~~~~---~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~  458 (504)
                      |..++.. ..+.   ........+--+|.|..-++....+ +..||..... ...+.....+..-.++..+..++.-.
T Consensus       216 dp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~  291 (353)
T COG4257         216 DPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWL  291 (353)
T ss_pred             ccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEe
Confidence            8777632 2222   1123345566677788777755555 8888876544 56666665555667777776666544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.06  E-value=0.014  Score=60.85  Aligned_cols=185  Identities=15%  Similarity=0.224  Sum_probs=103.8

Q ss_pred             CCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECC--CCeEEEEeecCCCCCCCCCeE
Q 010669          285 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLS--SGICLTQVSDAGTDGRPEGYT  361 (504)
Q Consensus       285 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~  361 (504)
                      ..+-+++-+....-  .....+++..+.|-.+.|-. +...+.  -.-|.+.+||+.  .|+....+...........+.
T Consensus       109 ~~~~vrvaN~~~sm--~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~  184 (1283)
T KOG1916|consen  109 MENGVRVANQEPSM--RHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQ  184 (1283)
T ss_pred             hhhhhhhccCcchh--HHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcc
Confidence            34567777654421  11123456778888888843 222222  233677888875  333322221110111122334


Q ss_pred             EEEECC---CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEE-----------EcCCCcEEEEEeCCc-EEEEE
Q 010669          362 SAAFHP---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAIS-----------FSENGYYLATAAHDG-VKLWD  426 (504)
Q Consensus       362 ~~~~~p---dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~-----------~s~~g~~l~s~~~d~-v~vwd  426 (504)
                      -+.|.|   +..++..+..+|.|++..+..... ..|.+|...++.++           +||||..|++++.|| +++|.
T Consensus       185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q  263 (1283)
T KOG1916|consen  185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ  263 (1283)
T ss_pred             eeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence            455555   667888888899998877654322 33455665555443           689999999999998 77665


Q ss_pred             c-----CCCcceeeeecCCCCCCeeEEEECCC-------C--CEEEEEeCc---EEEEEeeccCccceeE
Q 010669          427 L-----RKLKNFRSFESSDSETPTNSVDFDHS-------G--SYLAVASAD---IRVYQVASVKADWNCI  479 (504)
Q Consensus       427 ~-----~~~~~~~~~~~~~~~~~v~~i~~~~~-------g--~~l~~~~~d---i~vw~~~~~~~~~~~i  479 (504)
                      +     +..+++..++.|+....+..+ |+..       +  .+++++++-   +++|.-    ..|+|+
T Consensus       264 iyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~----a~w~Cl  328 (1283)
T KOG1916|consen  264 IYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAE----APWQCL  328 (1283)
T ss_pred             eeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeec----cchhhh
Confidence            4     344566666665422223333 4432       1  234444433   999987    678887

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.99  E-value=1.3  Score=41.03  Aligned_cols=152  Identities=11%  Similarity=0.041  Sum_probs=88.4

Q ss_pred             CeEEEEeccCCCEEEEEe---CCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe-CCCCCCc
Q 010669          225 GIVSLDIHYSKDVIATGG---VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ-GSEDGNY  300 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd-~~~~~~~  300 (504)
                      .+.+.+++++++.++...   ....++++.... .....+.+  ..+..-.|++++...+....+...+++. ...+. .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~-~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT-G  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc-c
Confidence            578899999999776655   334455554432 22222232  3678889999987766666666677774 22211 1


Q ss_pred             ceeEE-eccCCcCeEEEEEccCCCEEEEEe---CCCeEEEEECCCCeEE--EEeec--CCCCCCCCCeEEEEECCCCCEE
Q 010669          301 DCKHT-LKDHTAEVQAVTVHATNKYFVTAS---LDNTWCFYDLSSGICL--TQVSD--AGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       301 ~~~~~-~~~h~~~v~~l~~~p~~~~l~s~s---~dg~i~iwd~~~~~~~--~~~~~--~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      ..... ...-.+.|..+.++|||..++...   .++.|.+--+.....-  ..+..  .........+..+.|.+++.++
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence            11111 111122899999999999877765   3567776654321110  11100  0011223578999999999888


Q ss_pred             EEEeCCCc
Q 010669          373 GTGTSEAL  380 (504)
Q Consensus       373 ~~g~~dg~  380 (504)
                      +.+...+.
T Consensus       181 V~~~~~~~  188 (253)
T PF10647_consen  181 VLGRSAGG  188 (253)
T ss_pred             EEeCCCCC
Confidence            77765543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.91  E-value=2  Score=42.36  Aligned_cols=195  Identities=9%  Similarity=0.084  Sum_probs=92.6

Q ss_pred             CCCEEEEEe-CCCcEEEEeCCCCC-CcceeEEecc---CC----cCeEEEEEccCCCEEEEEeC------CCeEEEEECC
Q 010669          276 EGDLFLTGS-ADKTVRVWQGSEDG-NYDCKHTLKD---HT----AEVQAVTVHATNKYFVTASL------DNTWCFYDLS  340 (504)
Q Consensus       276 ~~~~l~s~s-~dg~i~iwd~~~~~-~~~~~~~~~~---h~----~~v~~l~~~p~~~~l~s~s~------dg~i~iwd~~  340 (504)
                      +.++|+..+ .++.|.|.|+.++. ..+..+++..   +.    ..-..+..-|+|+.++++-.      -|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345666665 78899999998543 2233344332   11    22334455678988888632      3468888888


Q ss_pred             CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe--------------------CCCcEEEEEcCCCceeeeeeCCC-
Q 010669          341 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT--------------------SEALVKIWDVKSQANVAKFDGHV-  399 (504)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~--------------------~dg~I~iwd~~~~~~~~~~~~~~-  399 (504)
                      +.+.........  +....-..+-|+|..+.+++..                    ...++.+||+.+.+.++++.--. 
T Consensus       166 tf~v~g~We~~~--~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  166 TFEVKGRWEKDR--GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             T--EEEE--SB---TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             cccccceeccCC--CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            877776665321  2233456788888888888753                    23579999999999998886322 


Q ss_pred             -CCeEEEEEcCC--CcEEEEEe-CCc-EEEE-EcCCCc----ceeeeecCCC---------------CCCeeEEEECCCC
Q 010669          400 -GAVTAISFSEN--GYYLATAA-HDG-VKLW-DLRKLK----NFRSFESSDS---------------ETPTNSVDFDHSG  454 (504)
Q Consensus       400 -~~i~~l~~s~~--g~~l~s~~-~d~-v~vw-d~~~~~----~~~~~~~~~~---------------~~~v~~i~~~~~g  454 (504)
                       ..+..|.|..+  ..+=++++ -.+ |..| ....++    .+..+.....               ..-|+.|.+|.|.
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence             24667777654  33433333 333 4444 323332    1111211100               1347899999999


Q ss_pred             CEEEEEeCc---EEEEEeecc
Q 010669          455 SYLAVASAD---IRVYQVASV  472 (504)
Q Consensus       455 ~~l~~~~~d---i~vw~~~~~  472 (504)
                      ++|++++.-   ++.||+...
T Consensus       324 rfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  324 RFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             -EEEEEETTTTEEEEEE-SST
T ss_pred             CEEEEEcccCCcEEEEecCCC
Confidence            999998764   999999543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=95.90  E-value=1.9  Score=41.96  Aligned_cols=260  Identities=9%  Similarity=0.080  Sum_probs=124.7

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc----cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ...+.+|.|..+.+-+++|. +|.|.. ..+.|+.-....    .....+.++.|.++ ..+++ +..|.|.. .-+.+.
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~DgG~  119 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDGGK  119 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCEEEE-EcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCCCC
Confidence            44788999986666666664 554432 122333322221    12234777877643 33443 45554332 222233


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                      .+.....-....+....+.....+..+ .++..|.|.. ..+.|+....+..    .....+..+.+.|++.+++++. .
T Consensus       120 tW~~~~~~~~~~~~~~~i~~~~~~~~~-~~g~~G~i~~-S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~-~  192 (334)
T PRK13684        120 NWTRIPLSEKLPGSPYLITALGPGTAE-MATNVGAIYR-TTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSS-R  192 (334)
T ss_pred             CCeEccCCcCCCCCceEEEEECCCcce-eeeccceEEE-ECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeC-C
Confidence            444332110111111222222222233 3344444432 2223433333321    2235688999999987776664 4


Q ss_pred             CcEEE-EEcCCCceeeee-eCCCCCeEEEEEcCCCcEEEEEeCCcEEEE-EcCCCcceeeeecC--CCCCCeeEEEECCC
Q 010669          379 ALVKI-WDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDGVKLW-DLRKLKNFRSFESS--DSETPTNSVDFDHS  453 (504)
Q Consensus       379 g~I~i-wd~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~s~~~d~v~vw-d~~~~~~~~~~~~~--~~~~~v~~i~~~~~  453 (504)
                      |.+.. +|- .++..... ..-...++++.+.+++..++++. .+..+. ....+........+  .....+..+.+.++
T Consensus       193 G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~  270 (334)
T PRK13684        193 GNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP  270 (334)
T ss_pred             ceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCC
Confidence            54432 221 12222222 22345789999999998777654 453334 33444433322221  11245788999998


Q ss_pred             CCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          454 GSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       454 g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      +..++++.....+... ...++|+.+.....-  ......+.|..+
T Consensus       271 ~~~~~~G~~G~v~~S~-d~G~tW~~~~~~~~~--~~~~~~~~~~~~  313 (334)
T PRK13684        271 GEIWAGGGNGTLLVSK-DGGKTWEKDPVGEEV--PSNFYKIVFLDP  313 (334)
T ss_pred             CCEEEEcCCCeEEEeC-CCCCCCeECCcCCCC--CcceEEEEEeCC
Confidence            8876665544344433 334677765432221  224455554433

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.80  E-value=3.5  Score=44.41  Aligned_cols=229  Identities=12%  Similarity=0.087  Sum_probs=122.1

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEc-ccCccceeEEEEeeC--C-C---EEEEEeCCCcEEEEeCCCC
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVTE--G-D---LFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~--~-~---~l~s~s~dg~i~iwd~~~~  297 (504)
                      .++....+.+...++.++.++.+...+...+...... +.....|.|+.++|-  + +   +++.|.++..+.+.-...+
T Consensus       489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd  568 (1096)
T KOG1897|consen  489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD  568 (1096)
T ss_pred             ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence            4555555555666777777777776666655422211 123467999999973  2 2   6888888877766544332


Q ss_pred             CCcceeEEecc--CCcCeEEEEEccCCCEEEEEeCCCeEEEEECC--CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669          298 GNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDNTWCFYDLS--SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       298 ~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                      ....+...+.+  -...|.-..+-.+..+|.++..||.+..|-+.  ++.....-+.  . -...++.--.|+..+..-+
T Consensus       569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~--~-lGt~P~~Lr~f~sk~~t~v  645 (1096)
T KOG1897|consen  569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV--T-LGTQPISLRTFSSKSRTAV  645 (1096)
T ss_pred             cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccc--c-cCCCCcEEEEEeeCCceEE
Confidence            21122221221  12334455555568899999999998766544  4433221110  0 1124555566666555444


Q ss_pred             EEeCCCcEEEEEcCCCceeeeeeCCCCCeEE-EEEcCC--CcEEEEEeCCcEEEEEcCCCcc--eeeeecCCCCCCeeEE
Q 010669          374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTA-ISFSEN--GYYLATAAHDGVKLWDLRKLKN--FRSFESSDSETPTNSV  448 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~--g~~l~s~~~d~v~vwd~~~~~~--~~~~~~~~~~~~v~~i  448 (504)
                      .+.+|.-..+|.-+ ++.+.+--.- ..+.. ..|+.+  +..|+++..+.+++.-+..-+.  ++++..   ......+
T Consensus       646 fa~sdrP~viY~~n-~kLv~spls~-kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl---~~~prrI  720 (1096)
T KOG1897|consen  646 FALSDRPTVIYSSN-GKLVYSPLSL-KEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL---GESPRRI  720 (1096)
T ss_pred             EEeCCCCEEEEecC-CcEEEeccch-HHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC---CCChhhe
Confidence            45566666666543 3332221111 01111 223332  3567777777777776654433  233333   3466778


Q ss_pred             EECCCCCEEEEEe
Q 010669          449 DFDHSGSYLAVAS  461 (504)
Q Consensus       449 ~~~~~g~~l~~~~  461 (504)
                      ++.+....+++.+
T Consensus       721 ~~q~~sl~~~v~s  733 (1096)
T KOG1897|consen  721 CYQESSLTFGVLS  733 (1096)
T ss_pred             EecccceEEEEEe
Confidence            8877555555443

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=95.71  E-value=3.1  Score=43.10  Aligned_cols=255  Identities=16%  Similarity=0.182  Sum_probs=122.7

Q ss_pred             ccCCCEEEEEeCCCcEEEEcCCCCc--eEEEcccC-ccceeEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCCcceeEEec
Q 010669          232 HYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGH-SKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLK  307 (504)
Q Consensus       232 s~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h-~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  307 (504)
                      ..++..++.+..+|.++...+....  .....-+. ....+++.+..+| .+|+.||.-|.=.++.+.. .....+..+.
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~-~~l~~~~~~~  297 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISL-SNLEVLDSLP  297 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEES-ESEEEEEEE-
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeC-CCcEEEEecc
Confidence            4567788889999999888765433  11122222 4455677776554 3777777655544444433 3345555554


Q ss_pred             cCCcCeEEEEEccC----CC------EEEEEe---CCCeEEEEECCCCeEEE--EeecCCCCCCCCCeEEEEECC-CCCE
Q 010669          308 DHTAEVQAVTVHAT----NK------YFVTAS---LDNTWCFYDLSSGICLT--QVSDAGTDGRPEGYTSAAFHP-DGLI  371 (504)
Q Consensus       308 ~h~~~v~~l~~~p~----~~------~l~s~s---~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p-dg~~  371 (504)
                       .-++|.++++-+.    ..      .+++++   .+|.+++..  .|-...  ........+ ...++.+.... ++.+
T Consensus       298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~  373 (504)
T PF10433_consen  298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPG-VTGIWTLKLSSSDHSY  373 (504)
T ss_dssp             ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSE
T ss_pred             -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCC-ceEEEEeeecCCCceE
Confidence             3478988888532    11      555554   467888763  332222  211110111 23344444333 2456


Q ss_pred             EEEEeCCCcEEEEEcC---CCceeee-----eeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCC
Q 010669          372 LGTGTSEALVKIWDVK---SQANVAK-----FDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSET  443 (504)
Q Consensus       372 l~~g~~dg~I~iwd~~---~~~~~~~-----~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~  443 (504)
                      |+.+..+. -+++.+.   ....+..     |......+.+-.+.  +..++=.+..+|++.+....+....+.... ..
T Consensus       374 lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~-~~  449 (504)
T PF10433_consen  374 LVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPA-GS  449 (504)
T ss_dssp             EEEEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TT-S-
T ss_pred             EEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCC-CC
Confidence            66665543 4455553   2333322     22122234333333  556666777789999988777776665542 45


Q ss_pred             CeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEc-cCCCCCCceeEEEEee
Q 010669          444 PTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTF-PDLSGTGAASFLFLFV  498 (504)
Q Consensus       444 ~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~-~~h~~~~~v~~l~~~~  498 (504)
                      .|...+... +..+++.+.. +.++.++...-........ ...  .+.|.|+...|
T Consensus       450 ~I~~a~~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~eis~l~i~p  503 (504)
T PF10433_consen  450 IIVAASIND-PQVLVALSGGELVYFELDDNKISVSDNDETILEL--DNEISCLSIEP  503 (504)
T ss_dssp             --SEEEESS-SEEEEEE-TTEEEEEEEETTEEEEEEE----EE---SS-EEEEE---
T ss_pred             eEEEEEECC-CEEEEEEeCCcEEEEEEECCceeeeeeccccccC--CCceEEEEeCC
Confidence            677666654 3444444444 8888884422111111010 012  56789988765

...

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=95.68  E-value=3.4  Score=45.09  Aligned_cols=125  Identities=14%  Similarity=0.130  Sum_probs=80.4

Q ss_pred             CCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCc-----eeeeeeCCC----------CCeEEEEEcCCCcEEEEEeCCc
Q 010669          358 EGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQA-----NVAKFDGHV----------GAVTAISFSENGYYLATAAHDG  421 (504)
Q Consensus       358 ~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~-----~~~~~~~~~----------~~i~~l~~s~~g~~l~s~~~d~  421 (504)
                      .+...++|+| +...||+....|...|||+....     .+.....+.          ..-..|.|.++-..|+.++...
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~  225 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK  225 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence            4678899999 66799999999999999992111     111111111          2334788988888899888888


Q ss_pred             EEEEEcCCCcceeeeecCCCCCCeeEEEECCC--CCEEEEEeCcEEEEEeeccCccceeEEEc
Q 010669          422 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS--GSYLAVASADIRVYQVASVKADWNCIKTF  482 (504)
Q Consensus       422 v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~--g~~l~~~~~di~vw~~~~~~~~~~~i~~~  482 (504)
                      +.++|+.+......+........|..+.-++.  +..++-.+..|...++.........+.++
T Consensus       226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~~~~~llSw  288 (765)
T PF10214_consen  226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSEKLTRLLSW  288 (765)
T ss_pred             eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCCCeeeeeec
Confidence            99999987765332333333567888888876  44444444447666764422234444444

These proteins are found in fungi.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.63  E-value=0.57  Score=48.77  Aligned_cols=112  Identities=13%  Similarity=0.149  Sum_probs=72.1

Q ss_pred             cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcC-
Q 010669          311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVK-  387 (504)
Q Consensus       311 ~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg~I~iwd~~-  387 (504)
                      ....-+.-+.-++..++-+....+.|||.+.+..-.....    .....|..+.|..  ||+.+++.+..+.|.+|--. 
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f----~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R  105 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF----SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR  105 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee----cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc
Confidence            3444454555455555544556799999998875444321    3356799999865  88888888888888887531 


Q ss_pred             ----C----Cceeeee--eCCC-CCeEEEEEcCCCcEEEEEeCCcEEEEEc
Q 010669          388 ----S----QANVAKF--DGHV-GAVTAISFSENGYYLATAAHDGVKLWDL  427 (504)
Q Consensus       388 ----~----~~~~~~~--~~~~-~~i~~l~~s~~g~~l~s~~~d~v~vwd~  427 (504)
                          +    ..++..+  ..|. .+|.+..|.++|.++ +|+.+.+.|+|-
T Consensus       106 ~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk  155 (631)
T PF12234_consen  106 YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDK  155 (631)
T ss_pred             hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEE-EEeCCEEEEECC
Confidence                1    1233333  2333 589999999999655 455556888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=0.0043  Score=56.17  Aligned_cols=44  Identities=23%  Similarity=0.289  Sum_probs=40.7

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPL   45 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   45 (504)
                      |-|-|+.+...+|||| +|||.|+..|-.+.++.+.+|++|+++.
T Consensus       242 f~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVT-KCGHYFCEVCALKPYQKGEKCYVCSQQT  285 (313)
T ss_pred             ccccccccccccchhh-cCCceeehhhhccccccCCcceeccccc
Confidence            3499999999999999 7999999999999999999999999764

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.56  E-value=2  Score=39.79  Aligned_cols=191  Identities=14%  Similarity=0.132  Sum_probs=116.2

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE---EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT---TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      -+..+.++  +++...+..+.-++|+|+.+.....   .+.. .+--.++.  -.|++...+..|.-+.+.|+.+.....
T Consensus        88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCce
Confidence            34455555  5677777777779999987654332   2221 12233333  368898888867778899998876556


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      ....+......-..++.+  |++-..+..|+-+.+.|+........+...   .....+.++..+++-.+++..+  --+
T Consensus       163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~---n~g~g~~sv~vsdnr~y~vvy~--egv  235 (370)
T COG5276         163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY---NTGPGTYSVSVSDNRAYLVVYD--EGV  235 (370)
T ss_pred             eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE---ecCCceEEEEecCCeeEEEEcc--cce
Confidence            666665555555666664  888888889999999999876544333211   1122677888887766666543  346


Q ss_pred             EEEEcCCCceeeeeeC--CCC--CeEEEEEcCCCcEEEEEeCC-cEEEEEcCC
Q 010669          382 KIWDVKSQANVAKFDG--HVG--AVTAISFSENGYYLATAAHD-GVKLWDLRK  429 (504)
Q Consensus       382 ~iwd~~~~~~~~~~~~--~~~--~i~~l~~s~~g~~l~s~~~d-~v~vwd~~~  429 (504)
                      .+-|....+....+..  ...  .++.+..  .|.+......+ ++.+-|+.+
T Consensus       236 livd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisn  286 (370)
T COG5276         236 LIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISN  286 (370)
T ss_pred             EEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccC
Confidence            6777766654444321  112  2232344  44555555444 366666654

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.47  E-value=0.043  Score=48.55  Aligned_cols=51  Identities=20%  Similarity=0.428  Sum_probs=42.6

Q ss_pred             CccccCCCCCCCc----eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCcccccc
Q 010669            1 MNCSISGEVPEEP----VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIK   54 (504)
Q Consensus         1 ~~c~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~   54 (504)
                      |+|+|+|-.|-.-    ++- -|||||+-+.+.+.=  ...|++||.+...+|.|.|.
T Consensus       112 fiCPvtgleMng~~~F~~l~-~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIvlN  166 (293)
T KOG3113|consen  112 FICPVTGLEMNGKYRFCALR-CCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIVLN  166 (293)
T ss_pred             eecccccceecceEEEEEEe-ccceeccHHHHHHhh--hccccccCCcccccCeEeeC
Confidence            5899999998773    445 499999999887654  45699999999999999994

>PRK13684 Ycf48-like protein; Provisional

Probab=95.37  E-value=2.9  Score=40.59  Aligned_cols=150  Identities=12%  Similarity=0.118  Sum_probs=86.4

Q ss_pred             CcCeEEEEEccCCCEEEEEeCCCeEEE-EECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 010669          310 TAEVQAVTVHATNKYFVTASLDNTWCF-YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS  388 (504)
Q Consensus       310 ~~~v~~l~~~p~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~  388 (504)
                      .+.+.++.+.|++.+++++ ..|.+.. +| ..++....+..    .....++.+.+.+++..+++| ..|.+++=....
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~  244 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD  244 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeC----CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC
Confidence            4578899999987666554 4554443 22 22222322221    234578999999999987776 457665322333


Q ss_pred             CceeeeeeC----CCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeec-CCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          389 QANVAKFDG----HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       389 ~~~~~~~~~----~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~-~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      +........    ....+..+.|.+++..++++ .++..+.....++....... .......+.+.|..++..+++|...
T Consensus       245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G  323 (334)
T PRK13684        245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG  323 (334)
T ss_pred             CCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence            333222211    12357889999988766655 45544455555555444432 1112357788888777777766655


Q ss_pred             -EEEE
Q 010669          464 -IRVY  467 (504)
Q Consensus       464 -i~vw  467 (504)
                       |--|
T Consensus       324 ~il~~  328 (334)
T PRK13684        324 VLLRY  328 (334)
T ss_pred             eEEEe
Confidence             4433

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=95.32  E-value=0.0059  Score=53.11  Aligned_cols=50  Identities=22%  Similarity=0.298  Sum_probs=42.8

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHH--hcCCCCC--CCCCCCCCccc
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHIL--DYGKCPV--TGEPLTMDDIV   51 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~--~~~~~~~~~~~   51 (504)
                      .|+|+-.+...|.+|.|+.|.|||.+|.+|++  ..-.||.  |.+.+.+++++
T Consensus       191 rCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v  244 (275)
T COG5627         191 RCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYV  244 (275)
T ss_pred             cCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchh
Confidence            49999999999999999999999999999999  3345997  66677777665

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.31  E-value=2.4  Score=39.24  Aligned_cols=161  Identities=16%  Similarity=0.147  Sum_probs=97.9

Q ss_pred             ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE
Q 010669          265 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC  344 (504)
Q Consensus       265 ~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~  344 (504)
                      .+-+..+.++  +++...+..+.-++|.|+.+......+..+.. .+--.++..  .|++...+..|.-+.+.|+.+...
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence            3446677774  56777777888899999998765444444432 233444444  589999998777778888876543


Q ss_pred             EEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce---eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc
Q 010669          345 LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN---VAKFDGHVGAVTAISFSENGYYLATAAHDG  421 (504)
Q Consensus       345 ~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~  421 (504)
                      ........  .....-..++.+  |++-..+..|+-+.+.|+.+...   +.... ....+.++..+++.-+++..+ .+
T Consensus       161 P~lagrya--~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~-eg  234 (370)
T COG5276         161 PQLAGRYA--LPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYD-EG  234 (370)
T ss_pred             ceeeeeec--cCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcc-cc
Confidence            32221110  111112344444  66777778899999999976532   22222 233788888887766665543 34


Q ss_pred             EEEEEcCCCcceeee
Q 010669          422 VKLWDLRKLKNFRSF  436 (504)
Q Consensus       422 v~vwd~~~~~~~~~~  436 (504)
                      +.+-|....+....+
T Consensus       235 vlivd~s~~ssp~~~  249 (370)
T COG5276         235 VLIVDVSGPSSPTVF  249 (370)
T ss_pred             eEEEecCCCCCceEe
Confidence            666776655543333

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=95.26  E-value=0.014  Score=37.51  Aligned_cols=40  Identities=23%  Similarity=0.446  Sum_probs=31.9

Q ss_pred             cccCCCCC---CCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCC
Q 010669            3 CSISGEVP---EEPVVSKNSGLLFEKRLIERHILDYGKCPVTGE   43 (504)
Q Consensus         3 c~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   43 (504)
                      |+|..+..   ..|+++ ..||+|..++|.+.......||+.++
T Consensus         2 C~~C~~~~~~~~~~~l~-~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEERRPRLT-SCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCCCeEEc-ccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            77777776   357888 59999999999999955557999763

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.13  E-value=1.9  Score=42.90  Aligned_cols=146  Identities=12%  Similarity=0.118  Sum_probs=87.0

Q ss_pred             CCCEEE-EEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCC-------EEEEEeCCCeEEEEECCC-CeEEE
Q 010669          276 EGDLFL-TGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-------YFVTASLDNTWCFYDLSS-GICLT  346 (504)
Q Consensus       276 ~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-------~l~s~s~dg~i~iwd~~~-~~~~~  346 (504)
                      +.++|+ .|+.-..+.-.|++.+   +.+.....|...  -+.|.|..+       .-++|-.+..|.-.|.+- |..+.
T Consensus       478 dssli~~dg~~~~kLykmDIErG---kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERG---KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             CcceEEecCCCcccceeeecccc---eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            444443 4445556666666665   556666666553  566777532       233444555565556553 32232


Q ss_pred             EeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEE
Q 010669          347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWD  426 (504)
Q Consensus       347 ~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd  426 (504)
                      ....... .......|..-. ...++++++..|-|++||--.-.....+.+....|..+..+.+|.++++.+...+.+-|
T Consensus       553 v~esKdY-~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d  630 (776)
T COG5167         553 VVESKDY-KTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTD  630 (776)
T ss_pred             eeeehhc-cccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEe
Confidence            2221111 111222333322 34589999999999999954333334456667789999999999999998887788888


Q ss_pred             cC
Q 010669          427 LR  428 (504)
Q Consensus       427 ~~  428 (504)
                      ++
T Consensus       631 ~~  632 (776)
T COG5167         631 VP  632 (776)
T ss_pred             cc
Confidence            75

>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74)

Probab=95.07  E-value=0.038  Score=42.30  Aligned_cols=52  Identities=33%  Similarity=0.510  Sum_probs=35.1

Q ss_pred             ccccCCCCCCCceEeCCCC-----eeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            2 NCSISGEVPEEPVVSKNSG-----LLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      .|+|+-++|++-|.-..++     ..|.+..+.+.+.+++.-|.|+||++.+-+|..
T Consensus        42 ~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~HPLSREpit~sMIv~k   98 (113)
T PF06416_consen   42 TCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAPHPLSREPITPSMIVSK   98 (113)
T ss_dssp             -BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT---TTT-----TTTEE-T
T ss_pred             CCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCCCCCccCCCChhhEech
Confidence            5999999999999865444     479999999999999999999999999888764

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=95.01  E-value=0.15  Score=47.69  Aligned_cols=50  Identities=18%  Similarity=0.371  Sum_probs=38.9

Q ss_pred             ccccCCCC-CCCc----eEeCCCCeeeeHHHHHHHHHhc-CCCCCCCCCCCCCcccc
Q 010669            2 NCSISGEV-PEEP----VVSKNSGLLFEKRLIERHILDY-GKCPVTGEPLTMDDIVP   52 (504)
Q Consensus         2 ~c~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~   52 (504)
                      .|+||..- ...|    .|+ .|||.||+.||+..+... +.||.|+.+|..+.+.+
T Consensus         5 ~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~   60 (309)
T TIGR00570         5 GCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV   60 (309)
T ss_pred             CCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence            59998873 3333    556 599999999999987654 57999999999887643

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.94  E-value=0.024  Score=53.75  Aligned_cols=72  Identities=15%  Similarity=0.187  Sum_probs=47.7

Q ss_pred             ccccCCCCCCCc---eEeCCCCeeeeHHHHHHHHHhcCC-CCCCCCCCCCCccccccCCCccC-CCCCCCCChhhHHH
Q 010669            2 NCSISGEVPEEP---VVSKNSGLLFEKRLIERHILDYGK-CPVTGEPLTMDDIVPIKTGKIVK-PRPLTAASIPGMLG   74 (504)
Q Consensus         2 ~c~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sip~ll~   74 (504)
                      .|+||-|-.++-   ++=| |+|.|=+.||..||.++++ ||+|.+...-+-.++.....++. +.-|+..+|+++++
T Consensus       231 ~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e~tp~~~~~~~~~~~~~~~s  307 (348)
T KOG4628|consen  231 TCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSEDTPLLSQGPSSNSLSNLAS  307 (348)
T ss_pred             eEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccCCCccccCCCCccccccccc
Confidence            699999886552   4454 9999999999999999987 99999855544444443332221 12233355555544

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.87  E-value=4.5  Score=40.14  Aligned_cols=135  Identities=9%  Similarity=0.105  Sum_probs=77.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCC--ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcc-----
Q 010669          360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKN-----  432 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~-----  432 (504)
                      ...+...+||.++++|.....++-||--..  +.+ . ......++.+.|.++|.+++++.. +-.+|....++.     
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~-~-~~~~~~l~~v~~~~dg~l~l~g~~-G~l~~S~d~G~~~~~~~  317 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPH-N-RASARRIQNMGWRADGGLWLLTRG-GGLYVSKGTGLTEEDFD  317 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEe-c-CCCccceeeeeEcCCCCEEEEeCC-ceEEEecCCCCcccccc
Confidence            445667788888887765444444543211  111 1 123457899999999988877644 433444444432     


Q ss_pred             eeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          433 FRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       433 ~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      ............+..+.|.+++..+++|... .++......++|+....-..-  ......+.|..++
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G-~v~~s~D~G~tW~~~~~~~~~--~~~ly~v~f~~~~  382 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSG-ILLRSTDGGKSWKRDKGADNI--AANLYSVKFFDDK  382 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEEECCC-cEEEeCCCCcceeEccccCCC--CcceeEEEEcCCC
Confidence            2222221113458899999888877766655 333333445678776543332  4567777776644

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=94.81  E-value=0.037  Score=51.78  Aligned_cols=52  Identities=17%  Similarity=0.423  Sum_probs=41.8

Q ss_pred             ccccCCCCCCCc---------eEeCC---CCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            2 NCSISGEVPEEP---------VVSKN---SGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         2 ~c~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      +|.||.+-+-+|         =++||   |||++--.|+..|++...+||||+.|+--|+=-++
T Consensus       289 ~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~~~~~  352 (491)
T COG5243         289 TCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQSSPT  352 (491)
T ss_pred             eEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccccCCCC
Confidence            699998763332         24444   99999999999999999999999999887766544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.76  E-value=2.2  Score=37.85  Aligned_cols=139  Identities=17%  Similarity=0.165  Sum_probs=82.9

Q ss_pred             CEEEEEeCCCeEEEEECCCC--eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC---C---cEEEE-EcCC----C
Q 010669          323 KYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE---A---LVKIW-DVKS----Q  389 (504)
Q Consensus       323 ~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d---g---~I~iw-d~~~----~  389 (504)
                      +.|+.+...+.|.+|++...  .....+.      .-+.|..+.++..|+++++--.+   .   .+|+| |.+.    .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~------Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~  102 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS------TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN  102 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc------chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccC
Confidence            55555567788999999833  3344443      22579999999999999985432   2   56664 2221    1


Q ss_pred             ceee-eeeCC---------------------CCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcc-ee---eeec-----
Q 010669          390 ANVA-KFDGH---------------------VGAVTAISFSENGYYLATAAHDGVKLWDLRKLKN-FR---SFES-----  438 (504)
Q Consensus       390 ~~~~-~~~~~---------------------~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~-~~---~~~~-----  438 (504)
                      .++. .+-||                     ..++.+++-.|...-|+.|+.+.+.+|.+..... ..   .++.     
T Consensus       103 ~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~  182 (215)
T PF14761_consen  103 SPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLI  182 (215)
T ss_pred             CcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhh
Confidence            2221 12221                     3367788888854456677777788998764332 11   1111     


Q ss_pred             -CCCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          439 -SDSETPTNSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       439 -~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                       +..+..+..++|  -+.|+|..+.. ++++.+
T Consensus       183 ~~~~~~~p~~v~i--c~~yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  183 DHIDNFKPTQVAI--CEGYIAVMSDLEVLVLKL  213 (215)
T ss_pred             heecCceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence             111222445555  46788888887 888876

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=94.74  E-value=0.0074  Score=55.77  Aligned_cols=47  Identities=15%  Similarity=0.233  Sum_probs=41.4

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTM   47 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   47 (504)
                      |.|.+++-.+.++-..+-|=|+|+|.||.+||+++-.||.++-.+--
T Consensus        16 itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~   62 (331)
T KOG2660|consen   16 ITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK   62 (331)
T ss_pred             eehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence            57999999999997666799999999999999999999999965543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.72  E-value=1.5  Score=43.53  Aligned_cols=139  Identities=12%  Similarity=0.151  Sum_probs=83.9

Q ss_pred             CCCEEE-EEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC-------EEEEEeCCCcEEEEEcCCC-ce
Q 010669          321 TNKYFV-TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-------ILGTGTSEALVKIWDVKSQ-AN  391 (504)
Q Consensus       321 ~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~-------~l~~g~~dg~I~iwd~~~~-~~  391 (504)
                      +.++|+ .|+.-..++-.|++.|+.+......      ..+ -+.|.|+.+       .-++|-++..|.-.|.|-. ..
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~------ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK  550 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLK------DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK  550 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecC------Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence            334433 4555667888899999888777532      123 566777432       2344556666666677643 22


Q ss_pred             eee--eeC--CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EE
Q 010669          392 VAK--FDG--HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IR  465 (504)
Q Consensus       392 ~~~--~~~--~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~  465 (504)
                      +..  ++.  .....++..-..+ -|+++++..| |++||--..+.-..++..  ...|..+..+.+|.++++.+.. +.
T Consensus       551 i~v~esKdY~tKn~Fss~~tTes-GyIa~as~kGDirLyDRig~rAKtalP~l--G~aIk~idvta~Gk~ilaTCk~yll  627 (776)
T COG5167         551 IKVVESKDYKTKNKFSSGMTTES-GYIAAASRKGDIRLYDRIGKRAKTALPGL--GDAIKHIDVTANGKHILATCKNYLL  627 (776)
T ss_pred             eeeeeehhccccccccccccccC-ceEEEecCCCceeeehhhcchhhhcCccc--ccceeeeEeecCCcEEEEeecceEE
Confidence            222  111  1112333333334 4788888888 999995432222223332  5689999999999999988888 77


Q ss_pred             EEEe
Q 010669          466 VYQV  469 (504)
Q Consensus       466 vw~~  469 (504)
                      +-++
T Consensus       628 L~d~  631 (776)
T COG5167         628 LTDV  631 (776)
T ss_pred             EEec
Confidence            7776

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=94.63  E-value=0.016  Score=57.11  Aligned_cols=52  Identities=27%  Similarity=0.462  Sum_probs=48.7

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVP   52 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~   52 (504)
                      +.|+|+..+..+|+-+..+||.|++.+|.+++..+.+||.....++.+++++
T Consensus        22 l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~   73 (391)
T KOG0297|consen   22 LLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP   73 (391)
T ss_pred             ccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence            3699999999999997569999999999999999999999999999999887

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.47  E-value=2.4  Score=44.78  Aligned_cols=148  Identities=8%  Similarity=0.069  Sum_probs=90.9

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceE------EEcc----------------cCccceeEEEEee--CCCEEEEEeCCCcEE
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIV------TTLS----------------GHSKKVTSVKFVT--EGDLFLTGSADKTVR  290 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~------~~~~----------------~h~~~v~~l~~s~--~~~~l~s~s~dg~i~  290 (504)
                      .++++++. .+.|.||+...-...      ..+.                .....|+.+....  +...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            67777765 678999986532211      0110                0112355555443  445799999999999


Q ss_pred             EEeCCC-------C----C------CcceeEEeccCCcCeEEEEEc--cCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 010669          291 VWQGSE-------D----G------NYDCKHTLKDHTAEVQAVTVH--ATNKYFVTASLDNTWCFYDLSSGICLTQVSDA  351 (504)
Q Consensus       291 iwd~~~-------~----~------~~~~~~~~~~h~~~v~~l~~~--p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  351 (504)
                      +|.++.       .    .      ...+...+. -...+++++++  ...++||+++....|.||-............ 
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~-  205 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP-  205 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc-
Confidence            996421       0    0      011222222 23578999999  7788899998888888876543211111100 


Q ss_pred             CCCCCCCCeEEEEECCCC---C---EEEEEeCCCcEEEEEc
Q 010669          352 GTDGRPEGYTSAAFHPDG---L---ILGTGTSEALVKIWDV  386 (504)
Q Consensus       352 ~~~~~~~~v~~~~~~pdg---~---~l~~g~~dg~I~iwd~  386 (504)
                       ...+...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       206 -s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  206 -SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             -ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence             11244568899998733   2   7888889999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK10115 protease 2; Provisional

Probab=94.46  E-value=8.5  Score=41.46  Aligned_cols=191  Identities=5%  Similarity=-0.013  Sum_probs=96.6

Q ss_pred             cceeEEEEeeCCCEEEEEeC-C----CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC------CeE
Q 010669          266 KKVTSVKFVTEGDLFLTGSA-D----KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD------NTW  334 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~s~s~-d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d------g~i  334 (504)
                      -.+..+.|+|++++|+.+.. +    ..|++.|+.++..  ....+.+   .-..++|.++++.|+.+..+      ..|
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW--YPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC--CCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence            34677889999998775532 2    3578888876421  1112211   11469999999876665442      368


Q ss_pred             EEEECCCC--eEEEEeecCCCCCCCCCeE-EEEECCCCCEEEEEeC---CCcEEEEEcC--CCceeeeeeCCCCCeEEEE
Q 010669          335 CFYDLSSG--ICLTQVSDAGTDGRPEGYT-SAAFHPDGLILGTGTS---EALVKIWDVK--SQANVAKFDGHVGAVTAIS  406 (504)
Q Consensus       335 ~iwd~~~~--~~~~~~~~~~~~~~~~~v~-~~~~~pdg~~l~~g~~---dg~I~iwd~~--~~~~~~~~~~~~~~i~~l~  406 (504)
                      ..+++.++  +....+...     ..... .+..+.|+++++..+.   ++.+.+|+..  .+.....+....+....+.
T Consensus       202 ~~h~lgt~~~~d~lv~~e~-----~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  276 (686)
T PRK10115        202 WRHTIGTPASQDELVYEEK-----DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD  276 (686)
T ss_pred             EEEECCCChhHCeEEEeeC-----CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE
Confidence            88888887  333333211     11222 3344548877665443   3578888853  3332222222222233332


Q ss_pred             EcCCCcEEEEEeCC--c--EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEE-eCc--EEEEEe
Q 010669          407 FSENGYYLATAAHD--G--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA-SAD--IRVYQV  469 (504)
Q Consensus       407 ~s~~g~~l~s~~~d--~--v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~-~~d--i~vw~~  469 (504)
                       +..+.+++....+  .  |...++........+..+.....+..+.+.  +++|+.. ..+  -+++-+
T Consensus       277 -~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        277 -HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             -eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence             3234444443333  2  444455422222333333223467778776  3444444 333  444444

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=94.46  E-value=7  Score=40.45  Aligned_cols=220  Identities=11%  Similarity=0.104  Sum_probs=98.4

Q ss_pred             CCeEEEEeccCC-CEEEEEeCCC--cEEEEcCCCCceEEEcccCccceeEEEEeeC----CC------EEEEEe---CCC
Q 010669          224 PGIVSLDIHYSK-DVIATGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE----GD------LFLTGS---ADK  287 (504)
Q Consensus       224 ~~I~~~~~s~~~-~~l~sg~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~----~~------~l~s~s---~dg  287 (504)
                      +..+++.+-.+| .+|+.|+.-|  .+.-|....-+.+..+. .-++|.++++.+.    ..      .|++++   .+|
T Consensus       256 ~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~g  334 (504)
T PF10433_consen  256 SIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRG  334 (504)
T ss_dssp             S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-
T ss_pred             ChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCC
Confidence            344455555444 4777777544  45455544445555555 4578988888531    11      455554   578


Q ss_pred             cEEEEeCCCCCCcc-eeEEeccC--CcCeEEEEEcc-CCCEEEEEeCCCeEEEEECC---CCeEEEEeecCCCCCCCCCe
Q 010669          288 TVRVWQGSEDGNYD-CKHTLKDH--TAEVQAVTVHA-TNKYFVTASLDNTWCFYDLS---SGICLTQVSDAGTDGRPEGY  360 (504)
Q Consensus       288 ~i~iwd~~~~~~~~-~~~~~~~h--~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~v  360 (504)
                      .+++..-.-+-  . ........  -..++.+.... ++.+++.+..+.+ +++.+.   ....+..+...+.......+
T Consensus       335 sL~~lr~Gi~~--~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl  411 (504)
T PF10433_consen  335 SLRILRNGIGI--EGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTL  411 (504)
T ss_dssp             EEEEEEESBEE--E--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEE-EEEEES----SSEEEEE---TS-SSS-EE
T ss_pred             cEEEEeccCCc--eeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCce-EEEEEecccCCcchhhhhhccCCCCCCCe
Confidence            88888532211  1 01111111  23445554432 2456666655543 455553   23333222111121222233


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC-CCCCeEEEEEcCCCcEEEEEeCC-cEEEEEcCCCcceeeeec
Q 010669          361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFES  438 (504)
Q Consensus       361 ~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~g~~l~s~~~d-~v~vwd~~~~~~~~~~~~  438 (504)
                      .+..+.  +..++=.+. ..|++.+...++....+.. ....|.+.+.+  +.+++.+..+ .+.++.+...........
T Consensus       412 ~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~  486 (504)
T PF10433_consen  412 AAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDND  486 (504)
T ss_dssp             EEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE-
T ss_pred             EEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeec
Confidence            333333  333443343 3488888877777766543 33456666663  3444444444 488888876554332221


Q ss_pred             C---CCCCCeeEEEECC
Q 010669          439 S---DSETPTNSVDFDH  452 (504)
Q Consensus       439 ~---~~~~~v~~i~~~~  452 (504)
                      .   .....|.++...|
T Consensus       487 ~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  487 ETILELDNEISCLSIEP  503 (504)
T ss_dssp             ---EE-SS-EEEEE---
T ss_pred             cccccCCCceEEEEeCC
Confidence            1   1246788887765

...

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.45  E-value=4.3  Score=37.96  Aligned_cols=226  Identities=15%  Similarity=0.140  Sum_probs=127.5

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCC-------CCceEEEccc-----CccceeEEEEeeCCC------------EEE
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRP-------SGQIVTTLSG-----HSKKVTSVKFVTEGD------------LFL  281 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~-------~~~~~~~~~~-----h~~~v~~l~~s~~~~------------~l~  281 (504)
                      -+-|+++|.+.+-++....+...+||..       ...++-++..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            3678999998887887788899999986       1123333331     224577777764222            367


Q ss_pred             EEeCCCcEEEEeCCCCCCc--ceeEEec-cCCcCe-EEEEEcc--CCCEEEEEe-CCCeEEEEECCCCeEEE--EeecCC
Q 010669          282 TGSADKTVRVWQGSEDGNY--DCKHTLK-DHTAEV-QAVTVHA--TNKYFVTAS-LDNTWCFYDLSSGICLT--QVSDAG  352 (504)
Q Consensus       282 s~s~dg~i~iwd~~~~~~~--~~~~~~~-~h~~~v-~~l~~~p--~~~~l~s~s-~dg~i~iwd~~~~~~~~--~~~~~~  352 (504)
                      .++.||+|.-|...-+...  .....+. ...+.| ..+++..  .+++|..+. ..++|.+||-.=.+...  .+....
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence            7899999999985433210  1112221 112333 3455543  345555553 47889998854222110  011000


Q ss_pred             CC-----------CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee--CCCCCeEEEEEcC------CCcE
Q 010669          353 TD-----------GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSE------NGYY  413 (504)
Q Consensus       353 ~~-----------~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~s~------~g~~  413 (504)
                      ..           +..-.|+...-.++++.=+.|-.-|.|-+||+ .+..++++.  +.-.....|+..|      .|.+
T Consensus       185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l  263 (336)
T TIGR03118       185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL  263 (336)
T ss_pred             CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence            00           00111222223333333334445578999997 667777774  2334556677766      4666


Q ss_pred             EEEEeCCc-EEEEEcCCCcceeeeecCCC----CCCeeEEEECC
Q 010669          414 LATAAHDG-VKLWDLRKLKNFRSFESSDS----ETPTNSVDFDH  452 (504)
Q Consensus       414 l~s~~~d~-v~vwd~~~~~~~~~~~~~~~----~~~v~~i~~~~  452 (504)
                      |+.--.|| |..||..+++.+-.+.....    ....+.+.|-.
T Consensus       264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            66665677 99999998887666554321    23467788765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.23  E-value=1.6  Score=35.43  Aligned_cols=104  Identities=13%  Similarity=0.144  Sum_probs=68.8

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCC--------ceeeeeeCCCCCeEEEEEcC-----CCcEEEEEeCCcEEEEEcC
Q 010669          362 SAAFHPDGLILGTGTSEALVKIWDVKSQ--------ANVAKFDGHVGAVTAISFSE-----NGYYLATAAHDGVKLWDLR  428 (504)
Q Consensus       362 ~~~~~pdg~~l~~g~~dg~I~iwd~~~~--------~~~~~~~~~~~~i~~l~~s~-----~g~~l~s~~~d~v~vwd~~  428 (504)
                      .-.|......|++++..|.|.|++....        ..+..+. -...|++|+-.+     +...|+.|+...+..||+.
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~   81 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE   81 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence            3456666667889999999999987533        2333333 445677775433     4568888988889999998


Q ss_pred             CCcceeeeecCCCCCCeeEEEECC----CCCEEEEEeCc-EEEEEe
Q 010669          429 KLKNFRSFESSDSETPTNSVDFDH----SGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       429 ~~~~~~~~~~~~~~~~v~~i~~~~----~g~~l~~~~~d-i~vw~~  469 (504)
                      ....+..-..+   ..++++.+-.    +...+++|++- |.-||.
T Consensus        82 ~N~d~Fyke~~---DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~  124 (136)
T PF14781_consen   82 NNSDLFYKEVP---DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY  124 (136)
T ss_pred             cCchhhhhhCc---cceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence            87665444443   4577766632    45666666665 777764

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=94.17  E-value=1.7  Score=39.78  Aligned_cols=149  Identities=16%  Similarity=0.222  Sum_probs=80.7

Q ss_pred             EEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC-C--CcEEEEeCCC-C--CCcceeEEeccCCcCeEEEEEcc
Q 010669          247 AVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-D--KTVRVWQGSE-D--GNYDCKHTLKDHTAEVQAVTVHA  320 (504)
Q Consensus       247 i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-d--g~i~iwd~~~-~--~~~~~~~~~~~h~~~v~~l~~~p  320 (504)
                      -.+||+.+++....-....--+.+-.+.+||++|.+|+. +  ..+++++... .  ..+......-.....--....-|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            457888776553322222223334456789999998875 2  3578887654 1  11111110011122223444567


Q ss_pred             CCCEEEEEeCCC-eEEEEECCCC-eEEEEe---ecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 010669          321 TNKYFVTASLDN-TWCFYDLSSG-ICLTQV---SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF  395 (504)
Q Consensus       321 ~~~~l~s~s~dg-~i~iwd~~~~-~~~~~~---~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~  395 (504)
                      ||+.|+.|+.+. +..+|.-... .....+   ..........-...+...|||++|+.+..++  .|||..+.+.+..+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence            999999888765 3455554221 111111   1000011123345678889999999987654  45788888776666


Q ss_pred             eC
Q 010669          396 DG  397 (504)
Q Consensus       396 ~~  397 (504)
                      ..
T Consensus       206 P~  207 (243)
T PF07250_consen  206 PD  207 (243)
T ss_pred             CC
Confidence            54

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.16  E-value=1.2  Score=43.48  Aligned_cols=146  Identities=9%  Similarity=0.044  Sum_probs=87.5

Q ss_pred             eEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 010669          269 TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV  348 (504)
Q Consensus       269 ~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~  348 (504)
                      +.+-|. |.+..+.+-..|.+.-|-+...+.-.++..-....++|.++.|++|.+.+++--.|.+|.+++....+.....
T Consensus        26 ngvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            334443 3333333444455666655443322233333345679999999999999999999999999988544332222


Q ss_pred             ecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669          349 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAA  418 (504)
Q Consensus       349 ~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~  418 (504)
                      .. ........|....|+.+ .-+|.....| +.+|-.... +.++..+.|...|+--.|.++...++.++
T Consensus       105 ~~-~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  105 TQ-ECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             HH-HhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            11 01233456888999876 3455544444 666665432 33445566777888888888776544443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.11  E-value=4.9  Score=38.91  Aligned_cols=160  Identities=13%  Similarity=0.215  Sum_probs=95.0

Q ss_pred             cCeEEEEEccCCCEEEEEeCCCe------EEEEECCCC----eEEEEe---ecCCCCCC-----CCCeEEEEECCCCCEE
Q 010669          311 AEVQAVTVHATNKYFVTASLDNT------WCFYDLSSG----ICLTQV---SDAGTDGR-----PEGYTSAAFHPDGLIL  372 (504)
Q Consensus       311 ~~v~~l~~~p~~~~l~s~s~dg~------i~iwd~~~~----~~~~~~---~~~~~~~~-----~~~v~~~~~~pdg~~l  372 (504)
                      +.+..|.+.+++..+++.+.+|.      +..+++...    ..+...   ......+.     ....-++++.++|.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            56788889877777777788887      666665541    111111   00001111     1134578887788888


Q ss_pred             EEEeCC------CcEEEEEcCCCceeeeee---------------CCCCCeEEEEEcCCCcEEEEEeCCc----------
Q 010669          373 GTGTSE------ALVKIWDVKSQANVAKFD---------------GHVGAVTAISFSENGYYLATAAHDG----------  421 (504)
Q Consensus       373 ~~g~~d------g~I~iwd~~~~~~~~~~~---------------~~~~~i~~l~~s~~g~~l~s~~~d~----------  421 (504)
                      ++.-.+      ..|+.+|.. ++.+..+.               ..+...-.|+++|+|..|+++.+..          
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            877666      788888865 55544331               1345788999999999766653221          


Q ss_pred             -----EEE--EEcCC-Ccceee--eecCC-----CCCCeeEEEECCCCCEEEEEeC-----c--EEEEEeec
Q 010669          422 -----VKL--WDLRK-LKNFRS--FESSD-----SETPTNSVDFDHSGSYLAVASA-----D--IRVYQVAS  471 (504)
Q Consensus       422 -----v~v--wd~~~-~~~~~~--~~~~~-----~~~~v~~i~~~~~g~~l~~~~~-----d--i~vw~~~~  471 (504)
                           +++  ||..+ +.....  +....     ....+..+.+-+++++|+.=-.     .  ++||.++.
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l  250 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL  250 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence                 344  45444 322222  22221     3567889999999998774311     2  77777653

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.04  E-value=1.3  Score=48.94  Aligned_cols=143  Identities=17%  Similarity=0.258  Sum_probs=87.6

Q ss_pred             eCCCcEEEEcCCCCceEEEcccCccceeEEEEe-e-------CCCEEEEEeCCCcEEEEeCCCCCC------cceeEEec
Q 010669          242 GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV-T-------EGDLFLTGSADKTVRVWQGSEDGN------YDCKHTLK  307 (504)
Q Consensus       242 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-~-------~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~~~  307 (504)
                      +.|+.+.+|+.+++.....+.+-...|..|..- |       .=++++.-+.--.|.++-+.-+..      +.....+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            357889999999988788888777777777643 2       223344334444566665432211      11112222


Q ss_pred             cCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC----CCCe----EEE-------------EeecCCCCCCCCCeEEEEEC
Q 010669          308 DHTAEVQAVTVHATNKYFVTASLDNTWCFYDL----SSGI----CLT-------------QVSDAGTDGRPEGYTSAAFH  366 (504)
Q Consensus       308 ~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~----~~~~----~~~-------------~~~~~~~~~~~~~v~~~~~~  366 (504)
                      .....|.++....+|+.|++|- ||  .+|.+    ..+-    +.+             .+... ...+..+|..+...
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~-~~~~~dpI~qi~ID  251 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV-PGSSKDPIRQITID  251 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcC-CCCCCCcceeeEec
Confidence            3345688998777887777664 45  33432    2211    100             00000 11456789999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCC
Q 010669          367 PDGLILGTGTSEALVKIWDVKS  388 (504)
Q Consensus       367 pdg~~l~~g~~dg~I~iwd~~~  388 (504)
                      ..-.++.+-+..|+|.+||+..
T Consensus       252 ~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  252 NSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cccceeeeeccCceEEEEEccC
Confidence            9999999999999999999965

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=94.02  E-value=9.2  Score=40.12  Aligned_cols=241  Identities=11%  Similarity=0.098  Sum_probs=122.8

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcC-CCCceEEEcc-cCccceeEEEEeeC---CCEEEEEeCCCc-EEEEeCCCC-
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDR-PSGQIVTTLS-GHSKKVTSVKFVTE---GDLFLTGSADKT-VRVWQGSED-  297 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~-~~~~~~~~~~-~h~~~v~~l~~s~~---~~~l~s~s~dg~-i~iwd~~~~-  297 (504)
                      .+.+..++|+.+.+-.|=....|.-|=+ .+.+.+..+. ..+..|.|+.....   .+..+.|-.++. -++-.+..+ 
T Consensus        29 ~~vs~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~  108 (670)
T PF10395_consen   29 LQVSDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKV  108 (670)
T ss_pred             eeeecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccC
Confidence            3444577888887665544444444432 3456666654 34456777766432   224444433332 343333221 


Q ss_pred             ---------CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-
Q 010669          298 ---------GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-  367 (504)
Q Consensus       298 ---------~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-  367 (504)
                               ........+. -.+.|.++.|.++++.+++...+|.|.+||...+......... . .+...+..-.|-+ 
T Consensus       109 ~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~-~-~~~~~v~ys~fv~~  185 (670)
T PF10395_consen  109 GSTEDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLK-L-KSSINVSYSKFVND  185 (670)
T ss_pred             ccccccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccc-c-ccccceehhhhhcc
Confidence                     1001122222 3577999999999999999999999999999333222111100 0 1111111112222 


Q ss_pred             -----CCCEEEEEeC-C---CcEEEEEcC-CCceeeeee---CCCCCeEEEEEcC-CCcEEEEEeCCcEEEEEcCCCcce
Q 010669          368 -----DGLILGTGTS-E---ALVKIWDVK-SQANVAKFD---GHVGAVTAISFSE-NGYYLATAAHDGVKLWDLRKLKNF  433 (504)
Q Consensus       368 -----dg~~l~~g~~-d---g~I~iwd~~-~~~~~~~~~---~~~~~i~~l~~s~-~g~~l~s~~~d~v~vwd~~~~~~~  433 (504)
                           ...++++-+. +   -..+++.+. ....+..+.   .+........|+- +|. |.--..+.|.+|++...+..
T Consensus       186 ~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l~~~~i~~ysip~f~~~  264 (670)
T PF10395_consen  186 FELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQLSKKTISSYSIPNFQIQ  264 (670)
T ss_pred             cccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEEeCCEEEEEEcCCceEE
Confidence                 1233333333 2   246777771 223333332   1222333344443 454 33334445999999998887


Q ss_pred             eeeecCCC---C-CCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669          434 RSFESSDS---E-TPTNSVDFDHSGSYLAVASADIRVYQV  469 (504)
Q Consensus       434 ~~~~~~~~---~-~~v~~i~~~~~g~~l~~~~~di~vw~~  469 (504)
                      .++.....   . ..+.++.--...+.|++..+.|.+.|+
T Consensus       265 ~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~  304 (670)
T PF10395_consen  265 KTISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDL  304 (670)
T ss_pred             EEEEechhhccccccceEeecCCCCeEEEEcCCEEEEEee
Confidence            77766421   1 234444322234555555555999998

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.99  E-value=0.11  Score=34.44  Aligned_cols=44  Identities=27%  Similarity=0.435  Sum_probs=28.5

Q ss_pred             CccccCCCCCCCceEeCCCCee--eeHHHHHHHHHhcCC--CCCCCCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLL--FEKRLIERHILDYGK--CPVTGEP   44 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~p~~~~~   44 (504)
                      +.|+||+..++.||=+..+-|.  |+-....++-+++++  ||+++++
T Consensus         3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            4699999999999999777775  998777777776664  9999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>PLN02153 epithiospecifier protein

Probab=93.84  E-value=6.9  Score=38.09  Aligned_cols=150  Identities=17%  Similarity=0.241  Sum_probs=71.5

Q ss_pred             CCCEEEEEeCC-------CcEEEEcCCCCceEEEcccCc---c----ceeEEEEeeCCCEEEEEeCC-----CcEEEEeC
Q 010669          234 SKDVIATGGVD-------TNAVLFDRPSGQIVTTLSGHS---K----KVTSVKFVTEGDLFLTGSAD-----KTVRVWQG  294 (504)
Q Consensus       234 ~~~~l~sg~~d-------g~i~vwd~~~~~~~~~~~~h~---~----~v~~l~~s~~~~~l~s~s~d-----g~i~iwd~  294 (504)
                      ++.+++.|+.+       ..+.+||..+.+-. .+....   .    ....+.+  ++.+++.|+.+     ..+.+||.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  108 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWS-IAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT  108 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEE-EcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence            45666777653       25778888765432 221110   0    1112222  56677777753     35778887


Q ss_pred             CCCCCcceeEEecc---CCcC-eEEEEEccCCCEEEEEeCC-----------CeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669          295 SEDGNYDCKHTLKD---HTAE-VQAVTVHATNKYFVTASLD-----------NTWCFYDLSSGICLTQVSDAGTDGRPEG  359 (504)
Q Consensus       295 ~~~~~~~~~~~~~~---h~~~-v~~l~~~p~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~  359 (504)
                      .+ ..+..+..+..   .... -.+++. -+++.++.|+.+           ..+.+||..+..-.. +...........
T Consensus       109 ~t-~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~  185 (341)
T PLN02153        109 VK-NEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRG  185 (341)
T ss_pred             CC-CEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCC
Confidence            76 33333322210   1111 112222 256677777653           247788888765332 211100000111


Q ss_pred             eEEEEECCCCCEEEEEeCC-------------CcEEEEEcCCCc
Q 010669          360 YTSAAFHPDGLILGTGTSE-------------ALVKIWDVKSQA  390 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~~d-------------g~I~iwd~~~~~  390 (504)
                      -.+++. -++++++.|+.+             ..+.+||+.+.+
T Consensus       186 ~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~  228 (341)
T PLN02153        186 GAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK  228 (341)
T ss_pred             cceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence            112222 256666665432             458889987653

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.81  E-value=7.2  Score=38.16  Aligned_cols=169  Identities=12%  Similarity=0.204  Sum_probs=94.2

Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEEC----CCCCE--EEEEe-CC---CcEEEEEcCCC
Q 010669          320 ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH----PDGLI--LGTGT-SE---ALVKIWDVKSQ  389 (504)
Q Consensus       320 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~----pdg~~--l~~g~-~d---g~I~iwd~~~~  389 (504)
                      |...+++....++-+.+||+... .+..+..       ..++.+..-    -.|+.  |++++ .+   ..|++|-+...
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~~-------Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~  137 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLPV-------GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPD  137 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS--EEEEE-S-------S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETT
T ss_pred             cccceEEEEeCCCCEEEEcCCCc-EEEeecC-------CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCC
Confidence            34567888888999999999855 4444431       123333221    13332  33433 32   46999977531


Q ss_pred             -ceeeeeeC-------CCCCeEEEEEc--C-CCc-EEEEEeCCc-EEEEEcC---CC----cceeeeecCCCCCCeeEEE
Q 010669          390 -ANVAKFDG-------HVGAVTAISFS--E-NGY-YLATAAHDG-VKLWDLR---KL----KNFRSFESSDSETPTNSVD  449 (504)
Q Consensus       390 -~~~~~~~~-------~~~~i~~l~~s--~-~g~-~l~s~~~d~-v~vwd~~---~~----~~~~~~~~~~~~~~v~~i~  449 (504)
                       ..+..+..       ....+..+|+.  + +|. +.+....+| +..|.+.   ++    +.++.|..   ...+..+.
T Consensus       138 ~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCV  214 (381)
T PF02333_consen  138 TGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCV  214 (381)
T ss_dssp             TTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEE
T ss_pred             CCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEE
Confidence             12332221       12346777774  3 354 555666667 7666664   33    35677766   35789999


Q ss_pred             ECCCCCEEEEEeCcEEEEEeeccC---ccceeEEEccCCCCCCceeEEEEeec
Q 010669          450 FDHSGSYLAVASADIRVYQVASVK---ADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       450 ~~~~g~~l~~~~~di~vw~~~~~~---~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      .+....+|+.+-+++-||.+.-..   .....+....+..-...|..|.++..
T Consensus       215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~  267 (381)
T PF02333_consen  215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG  267 (381)
T ss_dssp             EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-
T ss_pred             EecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEec
Confidence            999999999999998888875432   23445555544323678899998853

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.79  E-value=11  Score=40.43  Aligned_cols=80  Identities=16%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             CcCeEEEEEccCCCEEEEEeCCCeEEEEECC---------CCeE--E-EEee-c--CCCCCCCCCeEEEEECCC---CCE
Q 010669          310 TAEVQAVTVHATNKYFVTASLDNTWCFYDLS---------SGIC--L-TQVS-D--AGTDGRPEGYTSAAFHPD---GLI  371 (504)
Q Consensus       310 ~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~---------~~~~--~-~~~~-~--~~~~~~~~~v~~~~~~pd---g~~  371 (504)
                      .-.|..+.++|+|.+++..|..|.+.+.=.+         .|+.  . ..+. .  .........|..+.|||.   +..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3468999999999999998886644332211         1111  1 1111 0  001233467899999995   588


Q ss_pred             EEEEeCCCcEEEEEcCCC
Q 010669          372 LGTGTSEALVKIWDVKSQ  389 (504)
Q Consensus       372 l~~g~~dg~I~iwd~~~~  389 (504)
                      |++=+.|+++|+||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            889999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.75  E-value=5.8  Score=42.59  Aligned_cols=73  Identities=19%  Similarity=0.303  Sum_probs=52.0

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCC----------Cce---EEEc--------ccCccceeEEEEeeC---CCEE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPS----------GQI---VTTL--------SGHSKKVTSVKFVTE---GDLF  280 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~----------~~~---~~~~--------~~h~~~v~~l~~s~~---~~~l  280 (504)
                      .|..|.++++|.+|+..|..|.+.+ .+..          |+.   .+++        ..+...|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            5889999999999999988765443 3321          111   1111        134567899999995   5688


Q ss_pred             EEEeCCCcEEEEeCCCCC
Q 010669          281 LTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       281 ~s~s~dg~i~iwd~~~~~  298 (504)
                      +.-..|+++|+||+....
T Consensus       165 ~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEecCCEEEEEecCCCC
Confidence            888999999999987543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.55  E-value=0.018  Score=56.23  Aligned_cols=140  Identities=14%  Similarity=0.165  Sum_probs=97.2

Q ss_pred             eeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEE-EEeCCCeEEEEECCCCeEEE
Q 010669          268 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWCFYDLSSGICLT  346 (504)
Q Consensus       268 v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~-s~s~dg~i~iwd~~~~~~~~  346 (504)
                      .....|-+.+.-++.++.+..+..||-..    +..... ..++....++|.-+++.++ .+-..+.+.+||+.+.... 
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~ag----q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-  110 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAG----QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-  110 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhc----ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-
Confidence            34456777666688888888999998554    222222 2345667788887777544 4556789999999865422 


Q ss_pred             EeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEE
Q 010669          347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA  417 (504)
Q Consensus       347 ~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~  417 (504)
                      .+..    +....-.-+.|++.+..++.|...|.+.||+..+.+.+...-.|...+++++|.+.++.+..+
T Consensus       111 qLE~----gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  111 QLES----GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             HHhc----cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            2221    111222337899999999999999999999998877766665588899999999887654443

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.54  E-value=5.3  Score=43.42  Aligned_cols=158  Identities=16%  Similarity=0.139  Sum_probs=86.0

Q ss_pred             EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC--EEEEEe-----------CCCcEEEEEcC-CCceeeeeeC--
Q 010669          334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL--ILGTGT-----------SEALVKIWDVK-SQANVAKFDG--  397 (504)
Q Consensus       334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~--~l~~g~-----------~dg~I~iwd~~-~~~~~~~~~~--  397 (504)
                      |.++|..+++.+..+..... .....+..+.|+..+.  ++++|.           .+|.++.|++- .++.+.-+..  
T Consensus       855 I~~~d~~s~~~~~~~~l~~n-e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQN-EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCC-cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            67777777766655543211 2234566677776332  344443           24557777753 3443322221  


Q ss_pred             CCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCcc
Q 010669          398 HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD  475 (504)
Q Consensus       398 ~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~  475 (504)
                      -.++|  .+..|.+.++++|-.+.+++||+-+.+.++..........|..+.+  .+..+++|...  +.++.+.   +.
T Consensus       934 ~~~~v--~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~---~~ 1006 (1205)
T KOG1898|consen  934 IPGPV--GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYR---RE 1006 (1205)
T ss_pred             CCccc--eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEe---cC
Confidence            12233  4566766677777766799999988777665554332445666665  45566666554  6666652   33


Q ss_pred             ceeEEEccCCCCCCceeEEEEeec
Q 010669          476 WNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       476 ~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      .+.+..|-+..-.-.|+++.+...
T Consensus      1007 ~n~l~~fadD~~pR~Vt~~~~lD~ 1030 (1205)
T KOG1898|consen 1007 DNQLIVFADDPVPRHVTALELLDY 1030 (1205)
T ss_pred             CCeEEEEeCCCccceeeEEEEecC
Confidence            444444444323344555555433

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.44  E-value=3.8  Score=43.36  Aligned_cols=107  Identities=9%  Similarity=0.058  Sum_probs=67.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCC-------C----eE---EEEeecCCCCCCCCCeEEEEEC--CCCCEEEEEeCCCcEEEE
Q 010669          321 TNKYFVTASLDNTWCFYDLSS-------G----IC---LTQVSDAGTDGRPEGYTSAAFH--PDGLILGTGTSEALVKIW  384 (504)
Q Consensus       321 ~~~~l~s~s~dg~i~iwd~~~-------~----~~---~~~~~~~~~~~~~~~v~~~~~~--pdg~~l~~g~~dg~I~iw  384 (504)
                      ....|+.|.+||.|.+|.+++       .    ..   ...+...-...-....+.++++  ...+++|+++....|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            446889999999999997621       1    00   0000000001123468899999  888999999999988888


Q ss_pred             EcCCC--ce-eeeeeCCCCCeEEEEEcCC-----Cc-EEEEEeCCc-EEEEEc
Q 010669          385 DVKSQ--AN-VAKFDGHVGAVTAISFSEN-----GY-YLATAAHDG-VKLWDL  427 (504)
Q Consensus       385 d~~~~--~~-~~~~~~~~~~i~~l~~s~~-----g~-~l~s~~~d~-v~vwd~  427 (504)
                      -....  +. ...-..|...|-+|+|-++     |. +|++++-.| +.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            66442  11 1111125567899999774     32 677777777 877777

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.35  E-value=5  Score=35.30  Aligned_cols=177  Identities=15%  Similarity=0.101  Sum_probs=91.3

Q ss_pred             CCCEEEEEeC--CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCCcceeEEeccCC
Q 010669          234 SKDVIATGGV--DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKDHT  310 (504)
Q Consensus       234 ~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~  310 (504)
                      +|.++.+.+.  ...|++||+.+++.+.+-+-....+..=-...-++.+ .-.-.+|.-.++|..+-   +++..+. ..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~---~~lg~~~-y~  130 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL---EELGRFS-YE  130 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHh---hhhcccc-cC
Confidence            4556666553  3469999999998876554222222211111123322 23346778888887664   4444432 23


Q ss_pred             cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCc
Q 010669          311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA  390 (504)
Q Consensus       311 ~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~  390 (504)
                      +.=+.++.  ++..++.++...++..-|.++......+........-..++-+.|- ||.+.|-.-.+..|...|..+|+
T Consensus       131 GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr  207 (262)
T COG3823         131 GEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGR  207 (262)
T ss_pred             Ccceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence            44566654  4555666655566777776554333222210000001122233332 45555544445555556666666


Q ss_pred             eeeeee------------CCCCCeEEEEEcCCC-cEEEEE
Q 010669          391 NVAKFD------------GHVGAVTAISFSENG-YYLATA  417 (504)
Q Consensus       391 ~~~~~~------------~~~~~i~~l~~s~~g-~~l~s~  417 (504)
                      .+..+.            .|....+.|++.|++ +++++|
T Consensus       208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            544432            244567889999976 555554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.22  E-value=7.4  Score=36.48  Aligned_cols=210  Identities=15%  Similarity=0.156  Sum_probs=116.6

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC---C-CcceeEEecc-----CCcCeEEEEEccCCC------------EE
Q 010669          267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSED---G-NYDCKHTLKD-----HTAEVQAVTVHATNK------------YF  325 (504)
Q Consensus       267 ~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~---~-~~~~~~~~~~-----h~~~v~~l~~~p~~~------------~l  325 (504)
                      .-+.|+++|.+.+-++....+...+||....   + ....+.++..     .....+.+.|+....            .|
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            3578999999988888888889999998621   1 1122333321     124567777765332            36


Q ss_pred             EEEeCCCeEEEEECCCCeE-----EEEeecCCCCCCCCCeEEEEECC--CCCEE-EEEeCCCcEEEEEcCCCcee--eee
Q 010669          326 VTASLDNTWCFYDLSSGIC-----LTQVSDAGTDGRPEGYTSAAFHP--DGLIL-GTGTSEALVKIWDVKSQANV--AKF  395 (504)
Q Consensus       326 ~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~p--dg~~l-~~g~~dg~I~iwd~~~~~~~--~~~  395 (504)
                      +.+++||+|.-|...-+..     ...+. .+  ........+++..  .+.+| ++--..++|.|||-.=.+..  ..|
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d-~s--~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F  180 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVD-AS--QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF  180 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEc-cC--CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence            8889999999998543322     11121 11  1123345566654  24444 44456789999985322111  011


Q ss_pred             eCC----------------CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC------
Q 010669          396 DGH----------------VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH------  452 (504)
Q Consensus       396 ~~~----------------~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~------  452 (504)
                      ...                .-.|+...-.+++..=+.|..-| |-+||+. ++.++++.....-...+.|+..|      
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence            100                00112222222222222222335 9999975 67777776544455667888766      


Q ss_pred             CCCEEEEEeCc--EEEEEeeccCccceeEEEccC
Q 010669          453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      .|.+|+---.|  |.+||.    .++..+..+..
T Consensus       260 sg~lLVGNFGDG~InaFD~----~sG~~~g~L~~  289 (336)
T TIGR03118       260 SGALLVGNFGDGTINAYDP----QSGAQLGQLLD  289 (336)
T ss_pred             CCCeEEeecCCceeEEecC----CCCceeeeecC
Confidence            56666654445  999997    44555555544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA02790 Kelch-like protein; Provisional

Probab=93.09  E-value=2.5  Score=43.39  Aligned_cols=144  Identities=11%  Similarity=0.089  Sum_probs=70.4

Q ss_pred             CCCEEEEEeCC--CcEEEEcCCCCceEEEcccCccceeE-EEEeeCCCEEEEEeCCC---cEEEEeCCCCCCcceeEEec
Q 010669          234 SKDVIATGGVD--TNAVLFDRPSGQIVTTLSGHSKKVTS-VKFVTEGDLFLTGSADK---TVRVWQGSEDGNYDCKHTLK  307 (504)
Q Consensus       234 ~~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~  307 (504)
                      ++.+.+.||.+  ..+..||..+++-. .+..-..+... ....-+|...+.||.++   .+..||..+ +.|.....+.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~-~~W~~~~~m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNH-DQWQFGPSTY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEE-ECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCC-CEEEeCCCCC
Confidence            56666777754  35777876554322 22211111111 11123677778877653   467888776 3344332222


Q ss_pred             cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEE
Q 010669          308 DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----ALVK  382 (504)
Q Consensus       308 ~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d-----g~I~  382 (504)
                      ...... +++ .-++...+.|   |.+.+||.++++-... ..  ........ +++ .-+|++.++|+.+     ..+.
T Consensus       396 ~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~-~~--m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve  465 (480)
T PHA02790        396 YPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWTLI-DD--PIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIE  465 (480)
T ss_pred             Cccccc-eEE-EECCEEEEEC---CceEEecCCCCcEeEc-CC--CCCCcccc-EEE-EECCEEEEECCcCCCcccceEE
Confidence            111111 222 2256666666   4577899887654322 11  11111112 222 2267788888754     3456


Q ss_pred             EEEcCCC
Q 010669          383 IWDVKSQ  389 (504)
Q Consensus       383 iwd~~~~  389 (504)
                      .||..++
T Consensus       466 ~Yd~~~~  472 (480)
T PHA02790        466 VYNNRTY  472 (480)
T ss_pred             EEECCCC
Confidence            6666543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.07  E-value=8.4  Score=37.27  Aligned_cols=151  Identities=16%  Similarity=0.258  Sum_probs=86.5

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCc------EEEEeCCCCC----Ccc--eeEEeccCCc--------CeEEEEEccCCCEE
Q 010669          266 KKVTSVKFVTEGDLFLTGSADKT------VRVWQGSEDG----NYD--CKHTLKDHTA--------EVQAVTVHATNKYF  325 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~s~s~dg~------i~iwd~~~~~----~~~--~~~~~~~h~~--------~v~~l~~~p~~~~l  325 (504)
                      +.+..+.+.+++..+++.+.+|.      +..+++....    ...  ....+..-.+        ..-+|++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            45677888765556666666666      5545443310    000  0111111111        33477887778777


Q ss_pred             EEEeCC------CeEEEEECCCCeEEEEeecC----------CCCCCCCCeEEEEECCCCCEEEEEeC-----CC--c--
Q 010669          326 VTASLD------NTWCFYDLSSGICLTQVSDA----------GTDGRPEGYTSAAFHPDGLILGTGTS-----EA--L--  380 (504)
Q Consensus       326 ~s~s~d------g~i~iwd~~~~~~~~~~~~~----------~~~~~~~~v~~~~~~pdg~~l~~g~~-----dg--~--  380 (504)
                      ++.-.+      ..|..++.. |.....+...          .....+..+-.++++|||+.|+++.+     |+  .  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            777667      788888877 6554444211          11134567899999999996665533     22  1  


Q ss_pred             -----EEE--EEcCC-Cceee----eeeC-----CCCCeEEEEEcCCCcEEEEE
Q 010669          381 -----VKI--WDVKS-QANVA----KFDG-----HVGAVTAISFSENGYYLATA  417 (504)
Q Consensus       381 -----I~i--wd~~~-~~~~~----~~~~-----~~~~i~~l~~s~~g~~l~s~  417 (504)
                           +++  ||..+ +....    .+..     ....|+.+.+-+++.+|+.=
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence                 444  45544 32222    2222     34678999999999877754

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.86  E-value=0.71  Score=41.71  Aligned_cols=66  Identities=20%  Similarity=0.240  Sum_probs=50.0

Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCceeeee-------e-------CCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCC
Q 010669          364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKF-------D-------GHVGAVTAISFSENGYYLATAAHDGVKLWDLRK  429 (504)
Q Consensus       364 ~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~-------~-------~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~  429 (504)
                      .+..++.++++-+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+.+..+.||..-
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            35557889999999999999999988754322       1       244578889999899888877665588888654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.80  E-value=10  Score=36.85  Aligned_cols=109  Identities=19%  Similarity=0.210  Sum_probs=57.0

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe----ccCCcCeEEEEEccC---CCEEE-EEeCC-------
Q 010669          267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL----KDHTAEVQAVTVHAT---NKYFV-TASLD-------  331 (504)
Q Consensus       267 ~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~~p~---~~~l~-s~s~d-------  331 (504)
                      ..+.|+|.|+|+++++ ...|.|++++... .....+..+    .........++++|+   ..+|. +.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g-~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDG-SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEETTT-EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeCCC-cCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999887665 5699999998322 211122222    233457899999994   23333 33321       


Q ss_pred             -CeEEEEECCCC--e-----EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          332 -NTWCFYDLSSG--I-----CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       332 -g~i~iwd~~~~--~-----~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                       ..|.-|....+  .     .+...... .......-..+.|.|||.++++.+..
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~-~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPD-TSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES--CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCC-CCCCCCCCccccCCCCCcEEEEeCCC
Confidence             23444554433  1     11111111 11223456679999999777665543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.80  E-value=7.8  Score=35.66  Aligned_cols=202  Identities=11%  Similarity=0.061  Sum_probs=114.6

Q ss_pred             eeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 010669          268 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ  347 (504)
Q Consensus       268 v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~  347 (504)
                      -..++-.+||..-+++...|.|--.|..++   +....-.+....-..|..-|||..-++-+.. .|.-.|-++..... 
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tG---ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-  138 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATG---EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-  138 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCC---ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE-
Confidence            455667778887788877777777777775   2222222344455677778888765553333 45555655544322 


Q ss_pred             eecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC-CCCCeEEEEEcCCCcEEEEEeCCc-EEEE
Q 010669          348 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHDG-VKLW  425 (504)
Q Consensus       348 ~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~g~~l~s~~~d~-v~vw  425 (504)
                      +... ............|.+.|++.+++.. |.---.|... ..+..|.. .....+.|+..|||...++.-.++ |-..
T Consensus       139 f~lp-~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiari  215 (353)
T COG4257         139 FPLP-LEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARI  215 (353)
T ss_pred             eecc-cccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEc
Confidence            2211 1123456788999999999999863 2111112111 22333332 234567889999999888776666 7777


Q ss_pred             EcCCCcceeeeecCCC-CCCeeEEEECCCCCEEEEEeCcEEEEEeeccCcccee
Q 010669          426 DLRKLKNFRSFESSDS-ETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNC  478 (504)
Q Consensus       426 d~~~~~~~~~~~~~~~-~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~~  478 (504)
                      |...+.. ..+..... ......+--+|.|..-++-.....++.++...+.|..
T Consensus       216 dp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~e  268 (353)
T COG4257         216 DPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIE  268 (353)
T ss_pred             ccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccccee
Confidence            8776632 23332221 2334455556777776664444555555444444543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.60  E-value=6.8  Score=34.48  Aligned_cols=182  Identities=15%  Similarity=0.101  Sum_probs=94.7

Q ss_pred             CCCEEEEEeC--CCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCC
Q 010669          276 EGDLFLTGSA--DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAG  352 (504)
Q Consensus       276 ~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~  352 (504)
                      +|.++.+.+.  ...|++||+.+++   .+....-....+..=-...-++++..- =.+|.-..+|.++.+++..+... 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq---~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~-  130 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQ---EIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE-  130 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCce---EEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-
Confidence            4556666553  3469999998753   222211111111110011113333322 34777788898888777666422 


Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee----eeCC-CCCeEEEEEcCCCcEEEEEeCCc-EEEEE
Q 010669          353 TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK----FDGH-VGAVTAISFSENGYYLATAAHDG-VKLWD  426 (504)
Q Consensus       353 ~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~----~~~~-~~~i~~l~~s~~g~~l~s~~~d~-v~vwd  426 (504)
                           +.-..++  .|+.-|+.++...+++.-|.++.....+    +.+. -..++.+.|- +|...+-.-... |...|
T Consensus       131 -----GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~  202 (262)
T COG3823         131 -----GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID  202 (262)
T ss_pred             -----Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence                 2223333  3455566666666777777665433222    2221 1233344443 565555444443 66666


Q ss_pred             cCCCcceeeeecCC----------CCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          427 LRKLKNFRSFESSD----------SETPTNSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       427 ~~~~~~~~~~~~~~----------~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                      ..+++.+..+....          +....+.+++.|++..++..+.. -.+|.+
T Consensus       203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEV  256 (262)
T COG3823         203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEV  256 (262)
T ss_pred             CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEE
Confidence            66666655554321          23467889999998666655544 445544

>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species

Probab=92.59  E-value=0.27  Score=43.13  Aligned_cols=53  Identities=26%  Similarity=0.257  Sum_probs=38.3

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhHhhhcccchhHHHHHHhcchhHHHHHHHHHhh
Q 010669           82 GLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSER  134 (504)
Q Consensus        82 a~~le~~~lr~~l~~~~~els~aly~~daa~rv~a~l~kErd~ar~~l~~~~~  134 (504)
                      +|+.-+++|++-...+++|+...-.+-..-.....+..+||||||+++..+-.
T Consensus         9 ~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~   61 (214)
T PF07795_consen    9 KLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLL   61 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777777666666666554444444567778899999999999988773

The region in question is about 170 amino acids long.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.57  E-value=0.47  Score=30.00  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=0.0

Q ss_pred             CCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCC
Q 010669          358 EGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQ  389 (504)
Q Consensus       358 ~~v~~~~~~pdg~---~l~~g~~dg~I~iwd~~~~  389 (504)
                      +.+.++.|+|+..   +|+..-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC

It contains a characteristic DLL sequence motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	504
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-22
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		7e-22
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-21
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-21
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-21
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-21
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-21
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-21
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-21
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-21
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-21
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-21
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-21
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-21
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-21
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-21
2h9l_A	329	Wdr5delta23 Length = 329		2e-21
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-16
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-15
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-14
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		9e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-14
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-14
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-13
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-06
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-13
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-13
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-13
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-08
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-10
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-10
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-10
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-10
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-10
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-10
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-10
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-10
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-10
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-09
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-04
1n87_A	56	Solution Structure Of The U-Box Of Prp19 Length = 5		4e-09
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		6e-09
2bay_A	61	Crystal Structure Of The Prp19 U-Box Dimer Length =		6e-09
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		8e-09
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		9e-09
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		9e-09
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		9e-09
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		9e-09
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-08
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-08
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-07
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-07
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-07
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-07
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		4e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		7e-07
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		1e-06
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-06
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-06
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-06
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		4e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-05
3dw8_B	447	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		6e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		6e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		8e-05

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 124/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  ++ TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 69
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 124
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASA--DIRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+   D++++  +  K    C+KT+
Sbjct: 185 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNDLKLWDYSKGK----CLKTY 233

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 124/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  ++ TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 69
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 124
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 185 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 233

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 32  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 88
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 89  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 143
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 204 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 252

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 124/236 (52%), Gaps = 16/236 (6%)
Query: 250 FDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH 309
           F +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGH 67
Query: 310 TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 369
              +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P  
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQS 122
Query: 370 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLR 428
            ++ +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD  
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
             +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 183 SGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 233

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 124/236 (52%), Gaps = 16/236 (6%)
Query: 250 FDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH 309
           F +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGH 67
Query: 310 TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 369
              +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P  
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQS 122
Query: 370 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLR 428
            ++ +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD  
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
             +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 183 SGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 233

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 34  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 90
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 91  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 145
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 206 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 254

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 72
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 73  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 127
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 188 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 236

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 123/236 (52%), Gaps = 16/236 (6%)
Query: 250 FDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH 309
           F +P+  +  TL+GH+K V+SVKF   G+     SADK +++W G+ DG ++   T+  H
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIW-GAYDGKFE--KTISGH 67
Query: 310 TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 369
              +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P  
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQS 122
Query: 370 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLR 428
            ++ +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD  
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
             +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 183 SGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 233

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 66
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 67  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 121
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 182 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 230

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 72
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 73  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 127
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 188 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 236

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 66
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 67  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 121
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 182 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 230

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 11  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 67
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 68  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 122
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 183 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 231

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 15  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 71
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 72  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 126
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 187 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 235

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 6   KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 62
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 63  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 117
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 178 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 226

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 72
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 73  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 127
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 188 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 236

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 9   KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 65
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 66  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 120
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 181 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 229

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 16/234 (6%)
Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           +P+  +  TL+GH+K V+SVKF   G+   + SADK +++W G+ DG ++   T+  H  
Sbjct: 27  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 83
Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 371
            +  V   + +   V+AS D T   +D+SSG CL  +      G         F+P   +
Sbjct: 84  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 138
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 430
           + +G+ +  V+IWDVK+   +     H   V+A+ F+ +G  + ++++DG+ ++WD    
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 482
           +  ++    D+  P + V F  +G Y+  A+ D  ++++  +  K    C+KT+
Sbjct: 199 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTY 247

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 110/218 (50%), Gaps = 23/218 (10%)
Query: 231 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 290
           +H  +  + +G  D    ++D  +GQ +  L GH   V  V++  +G   ++G+ D  V+
Sbjct: 205 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK 262
Query: 291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 350
           VW    +    C HTL+ HT  V ++       + V+ SLD +   +D+ +G C+  ++ 
Sbjct: 263 VWDPETE---TCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVETGNCIHTLTG 317
Query: 351 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG---HVGAVTAISF 407
                  +  TS     D  IL +G +++ VKIWD+K+   +    G   H  AVT + F
Sbjct: 318 ------HQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370
Query: 408 SENGYYLATAAHDG-VKLWDLRK---LKNFRSFESSDS 441
           ++N  ++ T++ DG VKLWDL+    ++N  + ES  S
Sbjct: 371 NKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 406

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 112/240 (46%), Gaps = 20/240 (8%)
Query: 231 IHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 288
           + +S D   IA+   D    L++R +GQ++ TL+GHS  V  V F  +G    + S DKT
Sbjct: 63  VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 289 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 348
           V++W    + N     TL  H++ V  V      +   +AS D T   ++ +  +  T  
Sbjct: 122 VKLW----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 177
Query: 349 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 408
                 G        AF PDG  + + + +  VK+W+   Q  +    GH  +V  ++FS
Sbjct: 178 ------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFS 230
Query: 409 ENGYYLATAAHDG-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASADIRV 466
            +G  +A+A+ D  VKLW+    +N +  ++ +   +  N V F   G  +A AS D  V
Sbjct: 231 PDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 31/259 (11%)
Query: 232 HYSKDVIAT--------GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG 283
           H+  DV+ +        G  D    L+D  +G       GH+K V SV F ++    ++G
Sbjct: 64  HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 123
Query: 284 SADKTVRVWQGSEDGNYDCKHTLKD--HTAEVQAVTV--HATNKYFVTASLDNTWCFYDL 339
           S DKT+++W         CK+T++D  H+  V  V    +++N   V+   D     ++L
Sbjct: 124 SRDKTIKLWNTLG----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV 399
           ++  C  + +  G  G      +    PDG +  +G  +    +WD+    ++   DG  
Sbjct: 180 AN--CKLKTNHIGHTGY---LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG- 233
Query: 400 GAVTAISFSENGYYLATAAHDGVKLWDLR------KLKNFRSFESSDSETP-TNSVDFDH 452
             + A+ FS N Y+L  A    +K+WDL       +LK      SS +E P   S+ +  
Sbjct: 234 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 293
Query: 453 SGSYLAVASAD--IRVYQV 469
            G  L     D  +RV+QV
Sbjct: 294 DGQTLFAGYTDNLVRVWQV 312

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 7/177 (3%)
Query: 303 KHTLKDHTAEV-QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 361
           + TLK H   V Q  T        ++AS D T   + L+       +      G     +
Sbjct: 8   RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 67
Query: 362 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG 421
                 DG    +G+ +  +++WD+ +     +F GH   V +++FS +   + + + D 
Sbjct: 68  DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 127
Query: 422 -VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVASVK 473
            +KLW+   +  +   + S SE   + V F  + S   + S      ++V+ +A+ K
Sbjct: 128 TIKLWNTLGVCKYTVQDESHSEW-VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 183

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 31/259 (11%)
Query: 232 HYSKDVIAT--------GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG 283
           H+  DV+ +        G  D    L+D  +G       GH+K V SV F ++    ++G
Sbjct: 87  HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 146
Query: 284 SADKTVRVWQGSEDGNYDCKHTLKD--HTAEVQAVTV--HATNKYFVTASLDNTWCFYDL 339
           S DKT+++W         CK+T++D  H+  V  V    +++N   V+   D     ++L
Sbjct: 147 SRDKTIKLWNTLG----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV 399
           ++  C  + +  G  G      +    PDG +  +G  +    +WD+    ++   DG  
Sbjct: 203 AN--CKLKTNHIGHTGY---LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG- 256
Query: 400 GAVTAISFSENGYYLATAAHDGVKLWDLR------KLKNFRSFESSDSETP-TNSVDFDH 452
             + A+ FS N Y+L  A    +K+WDL       +LK      SS +E P   S+ +  
Sbjct: 257 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316
Query: 453 SGSYLAVASAD--IRVYQV 469
            G  L     D  +RV+QV
Sbjct: 317 DGQTLFAGYTDNLVRVWQV 335

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 14/213 (6%)
Query: 261 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 320
           L GHS  V+ V     G+  ++ S D ++R+W      N  C++    HT +V +V    
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ---NGQCQYKFLGHTKDVLSVAFSP 119
Query: 321 TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSE 378
            N+  V+   DN    +++  G C+  +S        +  +   F P  D  ++ +G  +
Sbjct: 120 DNRQIVSGGRDNALRVWNVK-GECMHTLSRGA---HTDWVSCVRFSPSLDAPVIVSGGWD 175
Query: 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKLKNFRSFE 437
            LVK+WD+ +   V    GH   VT+++ S +G   A++  DGV +LWDL K +      
Sbjct: 176 NLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA 235
Query: 438 SSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV 469
           +     P N + F  +  ++  A+   IR++ +
Sbjct: 236 AG---APINQICFSPNRYWMCAATEKGIRIFDL 265

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 9/153 (5%)
Query: 236 DVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 293
           + +A+   D    ++ +     + VTTL GH  +V SV +   G+L  T S DK+V VW+
Sbjct: 74  NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY--DLSSGICLTQVSDA 351
             E+  Y+C   L  HT +V+ V  H + +   +AS D+T   Y  +    +C      A
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC-----A 188
Query: 352 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 384
             +G      S AF P G  L + + +  V+IW
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 263 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN 322
           GH + V  V +   G+   + S D T  +W+ ++D +++C  TL+ H  EV++V    + 
Sbjct: 59  GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-DFECVTTLEGHENEVKSVAWAPSG 117
Query: 323 KYFVTASLDNT---WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379
               T S D +   W   +     C++ ++    D +        +HP   +L + + + 
Sbjct: 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK-----HVVWHPSQELLASASYDD 172
Query: 380 LVKIWDVKSQANV--AKFDGHVGAVTAISFSENGYYLATAAHD-GVKLW 425
            VK++  +    V  A  +GH   V +++F  +G  LA+ + D  V++W
Sbjct: 173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKF---DGHVGAVTAISFSENGYYLATAAHD 420
           A++P G +L +   +  ++IW  +  + + K    +GH   V  +++S  G YLA+A+ D
Sbjct: 23  AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 421 GVK-LWDLRKLKNFRSFESSDS----ETPTNSVDFDHSGSYLAVASADIRVY 467
               +W     KN   FE   +    E    SV +  SG+ LA  S D  V+
Sbjct: 83  ATTCIWK----KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVW 130

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 100/200 (50%), Gaps = 14/200 (7%)
Query: 229 LDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 288
           L + Y + VI TG  D+   ++D  +G+++ TL  H + V  ++F     + +T S D++
Sbjct: 177 LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRS 234
Query: 289 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 348
           + VW  +   +   +  L  H A V  V     +KY V+AS D T   ++ S+   +  +
Sbjct: 235 IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL 292
Query: 349 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 408
                +G   G     +  D L++ +G+S+  +++WD++  A +   +GH   V  I F 
Sbjct: 293 -----NGHKRGIACLQYR-DRLVV-SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF- 344
Query: 409 ENGYYLATAAHDG-VKLWDL 427
            +   + + A+DG +K+WDL
Sbjct: 345 -DNKRIVSGAYDGKIKVWDL 363

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 16/207 (7%)
Query: 232 HYSKDVIAT--------GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG 283
           H+ +DV+ +        G  D    L+D  +G       GH+K V SV F  +    ++ 
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTV--HATNKYFVTASLDNTWCFYDLSS 341
           S D+T+++W    +  Y      + H   V  V    +      V+AS D T   ++LS+
Sbjct: 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Query: 342 GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGA 401
             C  + + AG  G     ++ A  PDG +  +G  + +V +WD+     +   + +   
Sbjct: 551 --CKLRSTLAGHTGY---VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SV 604
Query: 402 VTAISFSENGYYLATAAHDGVKLWDLR 428
           + A+ FS N Y+L  A   G+K+WDL 
Sbjct: 605 IHALCFSPNRYWLCAATEHGIKIWDLE 631

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 116/269 (43%), Gaps = 37/269 (13%)
Query: 237 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW--QG 294
           V+ +   D    ++D  +G    TL GH+  V  + F   G L  + SAD T+++W  QG
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 354
                ++C  T+  H   V +V++     + V+AS D T   +++ +G C+   +     
Sbjct: 182 -----FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT----- 231
Query: 355 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS-ENGY- 412
           G  E       + DG ++ + +++  V++W V ++   A+   H   V  IS++ E+ Y 
Sbjct: 232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 291
Query: 413 ------------------YLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 453
                             +L + + D  +K+WD+       +    D+      V F HS
Sbjct: 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW--VRGVLF-HS 348
Query: 454 GSYLAVASADIRVYQVASVKADWNCIKTF 482
           G    ++ AD +  +V   K    C+KT 
Sbjct: 349 GGKFILSCADDKTLRVWDYKNK-RCMKTL 376

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420
           T   FHP   ++ + + +A +K+WD ++        GH  +V  ISF  +G  LA+ + D
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 171
Query: 421 -GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN 477
             +KLWD +  +  R+    D     +SV    +G ++  AS D  I++++V +      
Sbjct: 172 MTIKLWDFQGFECIRTMHGHDHN--VSSVSIMPNGDHIVSASRDKTIKMWEVQTG----Y 225
Query: 478 CIKTF 482
           C+KTF
Sbjct: 226 CVKTF 230

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 20/205 (9%)
Query: 238 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297
           +ATG  D    ++D  + +IV  L GH + + S+ +   GD  ++GS D+TVR+W     
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197
Query: 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV---SDAGTD 354
               C  TL                KY    SLD     +D  +G  + ++   +++GT 
Sbjct: 198 ---QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT- 253
Query: 355 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK------------FDGHVGAV 402
           G  +   S  F  DG  + +G+ +  VK+W++++  N +             + GH   V
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 403 TAISFSENGYYLATAAHD-GVKLWD 426
            +++ ++N  Y+ + + D GV  WD
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWD 338

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 19/180 (10%)
Query: 304 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD-AGTDGRPEGYT- 361
           H   DHT+ V  V      +Y  T   + T   Y +S G  + ++SD +  +  PE    
Sbjct: 58  HKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 116
Query: 362 -----------SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN 410
                      S  F PDG  L TG  + L++IWD++++  V    GH   + ++ +  +
Sbjct: 117 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 176
Query: 411 GYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVY 467
           G  L + + D  V++WDLR  +   +    D  T       D  G Y+A  S D  +RV+
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD--GKYIAAGSLDRAVRVW 234

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 238 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297
           I T   DT   L+D  +GQ  TT +GH+  V S+    +  LF++G+ D + ++W   E 
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 357
               C+ T   H +++ A+        F T S D T   +DL +   L   S    D   
Sbjct: 217 M---CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNII 270
Query: 358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 417
            G TS +F   G +L  G  +    +WD           GH   V+ +  +++G  +AT 
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 418 AHDG-VKLWD 426
           + D  +K+W+
Sbjct: 331 SWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 238 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297
           I T   DT   L+D  +GQ  TT +GH+  V S+    +  LF++G+ D + ++W   E 
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 357
               C+ T   H +++ A+        F T S D T   +DL +   L   S    D   
Sbjct: 217 M---CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNII 270
Query: 358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 417
            G TS +F   G +L  G  +    +WD           GH   V+ +  +++G  +AT 
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 418 AHDG-VKLWD 426
           + D  +K+W+
Sbjct: 331 SWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 238 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297
           I T   DT   L+D  +GQ  TT +GH+  V S+    +  LF++G+ D + ++W   E 
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 357
               C+ T   H +++ A+        F T S D T   +DL +   L   S    D   
Sbjct: 217 M---CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNII 270
Query: 358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 417
            G TS +F   G +L  G  +    +WD           GH   V+ +  +++G  +AT 
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 418 AHDG-VKLWD 426
           + D  +K+W+
Sbjct: 331 SWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 238 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297
           I T   DT   L+D  +GQ  TT +GH+  V S+    +  LF++G+ D + ++W   E 
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 357
               C+ T   H +++ A+        F T S D T   +DL +   L   S    D   
Sbjct: 217 M---CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNII 270
Query: 358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 417
            G TS +F   G +L  G  +    +WD           GH   V+ +  +++G  +AT 
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 418 AHDG-VKLWD 426
           + D  +K+W+
Sbjct: 331 SWDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 238 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297
           I T   DT   L+D  +GQ  TT +GH+  V S+    +  LF++G+ D + ++W   E 
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 357
               C+ T   H +++ A+        F T S D T   +DL +   L   S    D   
Sbjct: 228 M---CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNII 281
Query: 358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 417
            G TS +F   G +L  G  +    +WD           GH   V+ +  +++G  +AT 
Sbjct: 282 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 341
Query: 418 AHDG-VKLWD 426
           + D  +K+W+
Sbjct: 342 SWDSFLKIWN 351

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 15/213 (7%)
Query: 264 HSKKVTSVKFVTE----GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 319
           H   + SV + T      +  +TGS D  V+VW+   D   D + +L+ H   V +V + 
Sbjct: 31  HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW-RDERLDLQWSLEGHQLGVVSVDIS 89
Query: 320 ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379
            T     ++SLD     +DL +G  +  + DAG    P    + AF PD   L TGT   
Sbjct: 90  HTLPIAASSSLDAHIRLWDLENGKQIKSI-DAG----PVDAWTLAFSPDSQYLATGTHVG 144
Query: 380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 438
            V I+ V+S       D     + +I++S +G YLA+ A DG + ++D+   K   + E 
Sbjct: 145 KVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 204
Query: 439 SDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469
                P  S+ F      L  AS D  I++Y V
Sbjct: 205 --HAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 13/198 (6%)
Query: 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-DGNYDCKHTLKDHTAEVQAV 316
           V TLSGHS++V  +++  +G    +G  D  V VW  +  +G +    T   H   V+AV
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 317 TVHATNKYFVT---ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLI 371
                    +     + D     +++ SG CL+ V DA +        S  + P    LI
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQ-----VCSILWSPHYKELI 347
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKL 430
            G G ++  + IW   + A VA+  GH   V +++ S +G  +A+AA D  ++LW   +L
Sbjct: 348 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 407
Query: 431 KNFRSFESSDSETPTNSV 448
              R  E   +    +S+
Sbjct: 408 DPARRREREKASAAKSSL 425

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 17/210 (8%)
Query: 283 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG 342
           GS+ KT R      D   D      D+   +    V  ++   +  +LDN+   +  SSG
Sbjct: 91  GSSRKTCRYIPSLPDRILDAPEIRNDYYLNL----VDWSSGNVLAVALDNSVYLWSASSG 146
Query: 343 --ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG 400
             + L Q+   G     E  +S A+  +G  L  GTS A V++WDV+ Q  +     H  
Sbjct: 147 DILQLLQMEQPG-----EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA 201
Query: 401 AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 459
            V ++S+  N Y L++ +  G +   D+R  ++  +  S  S+     + +   G +LA 
Sbjct: 202 RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE-VCGLRWAPDGRHLAS 258
Query: 460 ASAD--IRVYQVASVKADWNCIKTFPDLSG 487
              D  + V+  A  +  W  ++TF    G
Sbjct: 259 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 288

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 13/198 (6%)
Query: 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-DGNYDCKHTLKDHTAEVQAV 316
           V TLSGHS++V  +++  +G    +G  D  V VW  +  +G +    T   H   V+AV
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 317 TVHATNKYFVT---ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLI 371
                    +     + D     +++ SG CL+ V DA +        S  + P    LI
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQ-----VCSILWSPHYKELI 336
Query: 372 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKL 430
            G G ++  + IW   + A VA+  GH   V +++ S +G  +A+AA D  ++LW   +L
Sbjct: 337 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396
Query: 431 KNFRSFESSDSETPTNSV 448
              R  E   +    +S+
Sbjct: 397 DPARRREREKASAAKSSL 414

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 17/210 (8%)
Query: 283 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG 342
           GS+ KT R      D   D      D+   +    V  ++   +  +LDN+   +  SSG
Sbjct: 80  GSSRKTCRYIPSLPDRILDAPEIRNDYYLNL----VDWSSGNVLAVALDNSVYLWSASSG 135
Query: 343 --ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG 400
             + L Q+   G     E  +S A+  +G  L  GTS A V++WDV+ Q  +     H  
Sbjct: 136 DILQLLQMEQPG-----EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA 190
Query: 401 AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 459
            V ++S+  N Y L++ +  G +   D+R  ++  +  S  S+     + +   G +LA 
Sbjct: 191 RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE-VCGLRWAPDGRHLAS 247
Query: 460 ASAD--IRVYQVASVKADWNCIKTFPDLSG 487
              D  + V+  A  +  W  ++TF    G
Sbjct: 248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 121/317 (38%), Gaps = 14/317 (4%)
Query: 163 GPAGKKLHTGITPAII-AELTDCNAALSQQRKKR---QVPPALAPIDALERYTQLASHPL 218
           G A   LH   T A + +E       L ++R K    ++      ++AL ++       L
Sbjct: 1   GMATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTL 60
Query: 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD 278
            K     ++ +D    K  I +   D   +++D  +      ++     V +  +   G 
Sbjct: 61  -KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 119
Query: 279 LFLTGSADKTVRVWQGSEDGNYDC---KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335
               G  D    V+  + D N +    K ++  HT  + A +   ++   +TAS D T  
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 179
Query: 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF 395
            +D+ SG  L      G D         A    G    +G  +    +WD++S   V  F
Sbjct: 180 LWDVESGQLLQSFHGHGADVLC---LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Query: 396 DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 454
           + H   V ++ +  +G   A+ + D   +L+DLR  +    +         +SVDF  SG
Sbjct: 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296
Query: 455 SYLAVASAD--IRVYQV 469
             L     D  I V+ V
Sbjct: 297 RLLFAGYNDYTINVWDV 313

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-DGNYDCKHTLKDHTAEVQAV 316
           V TLSGHS++V  +++  +G    +G  D  V VW  +  +G +    T   H   V+AV
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 317 TVHATNKYFVT---ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373
                    +     + D     +++ SG CL+ V DA +      ++    H   LI G
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSP---HYKELISG 258
Query: 374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNF 433
            G ++  + IW   + A VA+  GH   V +++ S +G  +A+AA D         L+ +
Sbjct: 259 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD-------ETLRLW 311
Query: 434 RSFE 437
           R FE
Sbjct: 312 RCFE 315

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 326 VTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI 383
           +  +LDN+   +  SSG  + L Q+   G     E  +S A+  +G  L  GTS A V++
Sbjct: 39  LAVALDNSVYLWSASSGDILQLLQMEQPG-----EYISSVAWIKEGNYLAVGTSSAEVQL 93
Query: 384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE 442
           WDV+ Q  +     H   V ++S+  N Y L++ +  G +   D+R  ++  +  S  S+
Sbjct: 94  WDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 151
Query: 443 TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG 487
                + +   G +LA    D  + V+  A  +  W  ++TF    G
Sbjct: 152 E-VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197

>pdb|1N87|A Chain A, Solution Structure Of The U-Box Of Prp19 Length = 56

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 1  MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53
          M C+ISG+VP  PV+S  S  +FEK L+E+++ D G  P+T EPL++++IV I
Sbjct: 1  MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI 53

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 33/264 (12%)
Query: 188 LSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLD--IHYSKDVIATGGVDT 245
           LSQQ + R     L  I  L+ +      P   T +  + S+   + +  + + TG  D 
Sbjct: 85  LSQQDRLR--LSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDK 142
Query: 246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 305
              ++D  + + +  LSGH   V ++K+   G + ++GS D+TVRVW   +     C H 
Sbjct: 143 MIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGC---CTHV 198
Query: 306 LKDHTAEVQAVTV--HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD--------- 354
            + H + V+ + +  +   KY VT S DNT   + L      + V D G +         
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE---SSVPDHGEEHDYPLVFHT 255
Query: 355 --------GRPEGYTSAA--FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTA 404
                   G   G+ ++       G I+ +G+ +  + +WDV     +    GH   + +
Sbjct: 256 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS 315
Query: 405 ISFSENGYYLATAAHD-GVKLWDL 427
             +        +A+ D  +++WDL
Sbjct: 316 TIYDHERKRCISASMDTTIRIWDL 339

>pdb|2BAY|A Chain A, Crystal Structure Of The Prp19 U-Box Dimer Length = 61

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 1  MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI 53
          M C+ISG+VP  PV+S  S  +FEK L+E+++ D G  P+T EPL++++IV I
Sbjct: 4  MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI 56

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 29/219 (13%)
Query: 231 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 290
           + +  + + TG  D    ++D  + + +  LSGH   V ++K+   G + ++GS D+TVR
Sbjct: 128 LQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVR 186
Query: 291 VWQGSEDGNYDCKHTLKDHTAEVQAVTV--HATNKYFVTASLDNTWCFYDLSSGICLTQV 348
           VW   +     C H  + H + V+ + +  +   KY VT S DNT   + L      + V
Sbjct: 187 VWDIKKGC---CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE---SSV 240
Query: 349 SDAGTD-----------------GRPEGYTSAA--FHPDGLILGTGTSEALVKIWDVKSQ 389
            D G +                 G   G+ ++       G I+ +G+ +  + +WDV   
Sbjct: 241 PDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQX 300
Query: 390 ANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDL 427
             +    GH   + +  +        +A+ D  +++WDL
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 18/208 (8%)
Query: 229 LDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 288
           +D H ++  + T        L++  +   V ++      V + KF+   +  + GS D  
Sbjct: 19  IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 289 VRVWQGSEDGNYDCKHTLKD---HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 345
           +RV+      NY+    + D   H   ++++ VH T  Y ++ S D T   ++  +   L
Sbjct: 79  IRVF------NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 346 TQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDV-KSQANVAKFDGHVGAVT 403
            Q      +G        AF+P D     +G  +  VK+W + +S  N     G    V 
Sbjct: 133 EQT----FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 404 AISFS--ENGYYLATAAHD-GVKLWDLR 428
            + +    +  Y+ TA+ D  +K+WD +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQ 216

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 18/208 (8%)
Query: 229 LDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 288
           +D H ++  + T        L++  +   V ++      V + KF+   +  + GS D  
Sbjct: 19  IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 289 VRVWQGSEDGNYDCKHTLKD---HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 345
           +RV+      NY+    + D   H   ++++ VH T  Y ++ S D T   ++  +   L
Sbjct: 79  IRVF------NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 346 TQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDV-KSQANVAKFDGHVGAVT 403
            Q      +G        AF+P D     +G  +  VK+W + +S  N     G    V 
Sbjct: 133 EQT----FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 404 AISFS--ENGYYLATAAHD-GVKLWDLR 428
            + +    +  Y+ TA+ D  +K+WD +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQ 216

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 16/205 (7%)
Query: 237 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW---Q 293
           ++ATG  D    L+D    +   T+ GH+  V   +F  + +L  + SAD T+R+W    
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Query: 294 GSEDGNYDCKHTL-------KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT 346
            +E  + + K          +D    V+  +  A     + A+  N    +D+ +   L 
Sbjct: 775 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLA 833
Query: 347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAIS 406
           ++      G         F P   +     S+  V++W++ S+  VA   GH+  V  + 
Sbjct: 834 EIH----TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 889
Query: 407 FSENGYYLATAAHDG-VKLWDLRKL 430
           FS +G    TA+ D  +++W+ +K+
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKV 914

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 16/205 (7%)
Query: 237 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW---Q 293
           ++ATG  D    L+D    +   T+ GH+  V   +F  + +L  + SAD T+R+W    
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Query: 294 GSEDGNYDCKHTL-------KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT 346
            +E  + + K          +D    V+  +  A     + A+  N    +D+ +   L 
Sbjct: 782 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLA 840
Query: 347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAIS 406
           ++      G         F P   +     S+  V++W++ S+  VA   GH+  V  + 
Sbjct: 841 EIH----TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 896
Query: 407 FSENGYYLATAAHDG-VKLWDLRKL 430
           FS +G    TA+ D  +++W+ +K+
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKV 921

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 27/239 (11%)
Query: 210 YTQLASHPLH--KTSKPGIVSLDIHYSKDVIATGGVDTNAVLF------DRPSGQIVT-T 260
           +  L S   H  K   P ++      +   +A GG+D+   +F      DR     V+  
Sbjct: 93  WNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRV 152
Query: 261 LSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQ---GSEDGNYDCKHTLKDHTAEVQAV 316
           L+GH    +S ++V + +   +TGS D+T  +W    G     +  +     HTA+V ++
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP-SGHTADVLSL 211
Query: 317 TVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 375
           ++++ N   F++ S D T   +DL     +T  +     G      S  F PDG   GTG
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLR----ITSRAVRTYHGHEGDINSVKFFPDGQRFGTG 267
Query: 376 TSEALVKIWDVKSQANVAKF-------DGHVGAVTAISFSENGYYLATAAHDG-VKLWD 426
           + +   +++D+++   +  +       D  +  VT+++FS +G  L     +G   +WD
Sbjct: 268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 91/236 (38%), Gaps = 32/236 (13%)
Query: 247 AVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 306
           AV F+        TL GHS KV S+ +  E +  ++ S D  + VW           H +
Sbjct: 48  AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK---THAI 104
Query: 307 KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--------- 357
           K H   V         +      LD+    ++LS        S A  DG           
Sbjct: 105 KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS--------SQADRDGNMPVSRVLTGH 156
Query: 358 EGYTSAA-FHPDGLI-LGTGTSEALVKIWDVKSQANVAKF-----DGHVGAVTAISFS-- 408
           +GY S+  + PD    L TG+ +    +WDV +   ++ F      GH   V ++S +  
Sbjct: 157 KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216
Query: 409 ENGYYLATAAHDGVKLWDLR-KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463
               +++ +    V+LWDLR   +  R++     E   NSV F   G      S D
Sbjct: 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHG--HEGDINSVKFFPDGQRFGTGSDD 270

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 12/197 (6%)
Query: 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 294
           K+ I  G  D    +F+  +G+ V     H   + S+         L+GS D TV++W  
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 295 SEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNT---WCFYDLSSGICLTQVSD 350
             + N+  + T + H   V  V  +  +   F +  LD T   W     +    LT   +
Sbjct: 127 --ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 351 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN 410
            G +     Y      PD   + T + +  +KIWD ++++ VA  +GH+  V+   F   
Sbjct: 185 RGVN-----YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 411 GYYLATAAHDG-VKLWD 426
              + + + DG +K+W+
Sbjct: 240 LPIIISGSEDGTLKIWN 256

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 12/197 (6%)
Query: 235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 294
           K+ I  G  D    +F+  +G+ V     H   + S+         L+GS D TV++W  
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 295 SEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNT---WCFYDLSSGICLTQVSD 350
             + N+  + T + H   V  V  +  +   F +  LD T   W     +    LT   +
Sbjct: 127 --ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 351 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN 410
            G +     Y      PD   + T + +  +KIWD ++++ VA  +GH+  V+   F   
Sbjct: 185 RGVN-----YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 411 GYYLATAAHDG-VKLWD 426
              + + + DG +K+W+
Sbjct: 240 LPIIISGSEDGTLKIWN 256

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 20/227 (8%)
Query: 251 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 310
           D+  G  V +  GHS  V       +G   L+ S DKT+R+W  +    Y        H 
Sbjct: 51  DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY---QRFVGHK 107
Query: 311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--- 367
           ++V +V +       ++ S D T   + +  G CL  +      G  +  +     P   
Sbjct: 108 SDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-----GHNDWVSQVRVVPNEK 161
Query: 368 ---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK 423
              D + + +  ++ +VK W++      A F GH   +  ++ S +G  +A+A  DG + 
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 424 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV 469
           LW+L   K   +  + D      S+ F  +  +LA A+A  I+V+ +
Sbjct: 222 LWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSL 265

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 20/227 (8%)
Query: 251 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 310
           D+  G  V +  GHS  V       +G   L+ S DKT+R+W  +    Y        H 
Sbjct: 51  DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY---QRFVGHK 107
Query: 311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--- 367
           ++V +V +       ++ S D T   + +  G CL  +      G  +  +     P   
Sbjct: 108 SDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-----GHNDWVSQVRVVPNEK 161
Query: 368 ---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK 423
              D + + +  ++ +VK W++      A F GH   +  ++ S +G  +A+A  DG + 
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 424 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA-DIRVYQV 469
           LW+L   K   +  + D      S+ F  +  +LA A+A  I+V+ +
Sbjct: 222 LWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSL 265

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 33/230 (14%)
Query: 261 LSGHSKKVTSV------KFVTEGDLFLTGSADKTVRVWQGSED---GNYDCKH-TLKDHT 310
           L GHS  VTS+      K   +  + ++GS DKTV +W+  E+   G +   H  L  H 
Sbjct: 17  LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 370
             V  + +   N + +++S D T   +DL +G    +       G      S AF PD  
Sbjct: 77  HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV-----GHQSEVYSVAFSPDNR 131
Query: 371 ILGTGTSEALVKIWDVKSQANV--AKFDGHVGAVTAISFS----------ENGYYLATAA 418
            + +  +E  +K+W++  +     A+ + H   V+ + +S              Y A+  
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 419 HDG-VKLWDLRKLKNFR-SFESSDSETPTNSVDFDHSGSYLAVASADIRV 466
            DG +K+W+     NF+  +     E+  N +    +G Y+A    D ++
Sbjct: 192 WDGRLKVWN----TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL 237

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 20/227 (8%)
Query: 251 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 310
           D+  G  V +  GHS  V       +G   L+ S DKT+R+W  +    Y        H 
Sbjct: 45  DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY---QRFVGHK 101
Query: 311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--- 367
           ++V +V +       ++ S D T   + +  G CL  +      G  +  +     P   
Sbjct: 102 SDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-----GHNDWVSQVRVVPNEK 155
Query: 368 ---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK 423
              D + + +  ++ +VK W++      A F GH   +  ++ S +G  +A+A  DG + 
Sbjct: 156 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 215
Query: 424 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA-DIRVYQV 469
           LW+L   K   +  + D      S+ F  +  +LA A+A  I+V+ +
Sbjct: 216 LWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSL 259

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 20/227 (8%)
Query: 251 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 310
           D+  G  V +  GHS  V       +G   L+ S DKT+R+W  +    Y        H 
Sbjct: 51  DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY---QRFVGHK 107
Query: 311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--- 367
           ++V +V +       ++ S D T   + +  G CL  +      G  +  +     P   
Sbjct: 108 SDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-----GHNDWVSQVRVVPNEK 161
Query: 368 ---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK 423
              D + + +  ++ +VK W++      A F GH   +  ++ S +G  +A+A  DG + 
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 424 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA-DIRVYQV 469
           LW+L   K   +  + D      S+ F  +  +LA A+A  I+V+ +
Sbjct: 222 LWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSL 265

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 20/227 (8%)
Query: 251 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 310
           D+  G  V +  GHS  V       +G   L+ S DKT+R+W  +    Y        H 
Sbjct: 51  DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY---QRFVGHK 107
Query: 311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--- 367
           ++V +V +       ++ S D T   + +  G CL  +      G  +  +     P   
Sbjct: 108 SDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-----GHNDWVSQVRVVPNEK 161
Query: 368 ---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK 423
              D + + +  ++ +VK W++      A F GH   +  ++ S +G  +A+A  DG + 
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 424 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA-DIRVYQV 469
           LW+L   K   +  + D      S+ F  +  +LA A+A  I+V+ +
Sbjct: 222 LWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSL 265

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 31/241 (12%)
Query: 249 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 308
           L+ + S      L+GH + +T VK+  EGDL  + S D +  VW      N +   TL  
Sbjct: 16  LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSL---NGERLGTLDG 72
Query: 309 HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD 368
           HT  + ++ V    KY VT S D +   +D+S+G C+       T   P       F P 
Sbjct: 73  HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV------ATWKSPVPVKRVEFSPC 126
Query: 369 G-----LILGTGTSEALVKIWDVK-----------SQANVAKFDGHVG--AVTAISFSEN 410
           G     ++     +   + I++++           S+  + K   H G  A T   +S  
Sbjct: 127 GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK 186
Query: 411 GYYLATAAHDG-VKLWDLRKLKNFRSFESSD-SETPTNSVDFDHSGSYLAVASADIRVYQ 468
           G Y+     DG +  +D+    N+   +S D  E   + + F    +Y   +S D   + 
Sbjct: 187 GKYIIAGHKDGKISKYDVS--NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFL 244
Query: 469 V 469
           V
Sbjct: 245 V 245

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 31/248 (12%)
Query: 240 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDG 298
           TG VD N           V  + GH+  V  + +    D +  +GS D TV VW+  + G
Sbjct: 67  TGRVDKN-----------VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115
Query: 299 NY----DCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGT 353
                 +   TL+ HT  V  V  H T     ++A  DN    +D+ +G     V   G 
Sbjct: 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---AAVLTLGP 172
Query: 354 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGA--VTAISFSEN 410
           D  P+   S  +  DG ++ T   +  V++ + +    VA+ D  H G   V A+  SE 
Sbjct: 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE- 231
Query: 411 GYYLATA----AHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS---AD 463
           G  L T     +   V LWD + L+   S +  D+ +      FD   + + +     + 
Sbjct: 232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291
Query: 464 IRVYQVAS 471
           IR +++ S
Sbjct: 292 IRYFEITS 299

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 31/248 (12%)
Query: 240 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDG 298
           TG VD N           V  + GH+  V  + +    D +  +GS D TV VW+  + G
Sbjct: 67  TGRVDKN-----------VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGG 115
Query: 299 NY----DCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGT 353
                 +   TL+ HT  V  V  H T     ++A  DN    +D+ +G  +  +   G 
Sbjct: 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL---GP 172
Query: 354 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGA--VTAISFSEN 410
           D  P+   S  +  DG ++ T   +  V++ + +    VA+ D  H G   V A+  SE 
Sbjct: 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE- 231
Query: 411 GYYLATA----AHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV---ASAD 463
           G  L T     +   V LWD + L+   S +  D+ +      FD   + + +     + 
Sbjct: 232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291
Query: 464 IRVYQVAS 471
           IR +++ S
Sbjct: 292 IRYFEITS 299

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 20/227 (8%)
Query: 251 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 310
           D+  G  V +  GHS  V       +G   L+ S DKT+R+W  +    Y        H 
Sbjct: 51  DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY---QRFVGHK 107
Query: 311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--- 367
           ++V +V +       ++ S D T   + +  G CL  +      G  +  +     P   
Sbjct: 108 SDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATLL-----GHNDWVSQVRVVPNEK 161
Query: 368 ---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK 423
              D + + +  ++  VK W++      A F GH   +  ++ S +G  +A+A  DG + 
Sbjct: 162 ADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIX 221
Query: 424 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA-DIRVYQV 469
           LW+L   K   +  + D      S+ F  +  +LA A+A  I+V+ +
Sbjct: 222 LWNLAAKKAXYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSL 265

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 353 TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 412
           T   P  Y + A  PD  +  +  S+  + +WD+ +Q  V +F GH    + I  S +G 
Sbjct: 138 TSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196
Query: 413 YLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA--SADIRVYQV 469
            L T   D  V+ WDLR+    R  +  D  +   S+ +  +G +LAV   S+++ V  V
Sbjct: 197 KLWTGGLDNTVRSWDLRE---GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 94/223 (42%), Gaps = 24/223 (10%)
Query: 220 KTSKPGIVSLDIHYSKDVIATGGVDTN----AVLFDRPSGQIVTTLSGHSKKVTSVKFVT 275
           K  K  I S D  +S+ ++ATG  D      +V +D  +   V   + H K + SV +  
Sbjct: 11  KLYKEKIWSFD--FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP 68
Query: 276 EGDLFLTGSADKTVRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHATNKYFVTASLD 331
              L   GS D TV +W   E  +     D    ++ H  EV+ V       Y  T S D
Sbjct: 69  HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD 128
Query: 332 NT-WCFYDLSSG---ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW-DV 386
            + W +    SG    C++ + +   D +        +HP   +L + + +  V+IW D 
Sbjct: 129 KSVWIWETDESGEEYECISVLQEHSQDVKH-----VIWHPSEALLASSSYDDTVRIWKDY 183
Query: 387 KSQAN-VAKFDGHVGAVTAISF--SENGYYLATAAHDG-VKLW 425
                 VA  +GH G V +  F  +E  + L + + D  V++W
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 362 SAAFHPDGLILGTGTSEALVKIWDVKSQAN-------VAKFDGHVGAVTAISFSENGYYL 414
           S A+ P   +L  G+ ++ V IW  +  A+       +A  +GH   V  +++S +GYYL
Sbjct: 63  SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL 122
Query: 415 ATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDH-----SGSYLAVASADIRVYQV 469
           AT + D   +W     ++   +E   S    +S D  H     S + LA +S D  V   
Sbjct: 123 ATCSRDK-SVWIWETDESGEEYECI-SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Query: 470 ASVKADWNCIKTFPDLSGTGAAS 492
                DW C+       GT  +S
Sbjct: 181 KDYDDDWECVAVLNGHEGTVWSS 203

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 322 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGT--DGRPEGYTSAAFH-PDGLILGTGTSE 378
           N Y ++AS D+T C +D+++     +V DA     G        A+H     + G+   +
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 379 ALVKIWDVKSQANVAK----FDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLK- 431
             + IWD ++  N +K     D H   V  +SF+  + + LAT + D  V LWDLR LK 
Sbjct: 254 QKLMIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
Query: 432 NFRSFESSDSETPTNSVDFD-HSGSYLAVASADIRVY 467
              SFES   E     V +  H+ + LA +  D R++
Sbjct: 313 KLHSFESHKDE--IFQVQWSPHNETILASSGTDRRLH 347

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 322 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGT--DGRPEGYTSAAFH-PDGLILGTGTSE 378
           N Y ++AS D+T C +D+++     +V DA     G        A+H     + G+   +
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 379 ALVKIWDVKSQANVAK----FDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLK- 431
             + IWD ++  N +K     D H   V  +SF+  + + LAT + D  V LWDLR LK 
Sbjct: 256 QKLMIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
Query: 432 NFRSFESSDSETPTNSVDFD-HSGSYLAVASADIRVY 467
              SFES   E     V +  H+ + LA +  D R++
Sbjct: 315 KLHSFESHKDE--IFQVQWSPHNETILASSGTDRRLH 349

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 322 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGT--DGRPEGYTSAAFH-PDGLILGTGTSE 378
           N Y ++AS D+T C +D+++     +V DA     G        A+H     + G+   +
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 379 ALVKIWDVKSQANVAK----FDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLK- 431
             + IWD ++  N +K     D H   V  +SF+  + + LAT + D  V LWDLR LK 
Sbjct: 258 QKLMIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
Query: 432 NFRSFESSDSETPTNSVDFD-HSGSYLAVASADIRVY 467
              SFES   E     V +  H+ + LA +  D R++
Sbjct: 317 KLHSFESHKDE--IFQVQWSPHNETILASSGTDRRLH 351

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 24/229 (10%)
Query: 237 VIATGGVDTNAVLFDR--------PSGQIV--TTLSGHSKKVTSVKFVTE--GDLFLTGS 284
           +IAT    ++ ++FD         PSG+      L GH K+   + + +   G L L+ S
Sbjct: 141 IIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL-LSAS 199
Query: 285 ADKTVRVWQ---GSEDGNY-DCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDL 339
            D TV +W    G ++G   D K     H+A V+ V  H  ++  F + + D     +D 
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT 259
Query: 340 SSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKS-QANVAKFDG 397
            S    T       D         +F+P    IL TG+++  V +WD+++ +  +  F+ 
Sbjct: 260 RSNT--TSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 317
Query: 398 HVGAVTAISFS-ENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETP 444
           H   +  + +S  N   LA++  D  + +WDL K+   +S E ++   P
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366

>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/283 (17%), Positives = 109/283 (38%), Gaps = 81/283 (28%)
Query: 226 IVSLDIHYSKDVIATGGVDTNAVLFD-----------RPSGQIVTTLSGHS--------- 265
           I +++ ++S +++ATG      V+F            R    + +T   H          
Sbjct: 31  ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSL 90
Query: 266 ---KKVTSVKFVTEGDL--FLTGSADKTVRVWQGSE-------------DGNYDCKHTL- 306
              +K+  ++++ + +   FL  + DKT+++W+ SE             DG Y    T+ 
Sbjct: 91  EIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVT 150
Query: 307 -----------------------KDHTAEVQAVTVHATNKYFVTAS--LDNTWCFYDLSS 341
                                    HT  + ++++++  + +++A     N W       
Sbjct: 151 TLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDR 210
Query: 342 GICLTQVSDAGTDGRPEGYTSAAFHPDGL-ILGTGTSEALVKIWDVKSQA---------- 390
              +  +  A  +   E  T+A FHP+        +S+  +++ D+++ A          
Sbjct: 211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270
Query: 391 ------NVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDL 427
                 N + F   + +++ + FS +G Y+ T  +  VK+WDL
Sbjct: 271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDL 313

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 324 YFVTASLDNTWCFYDLSSGICLTQVSDAGT--DGRPEGYTSAAFH-PDGLILGTGTSEAL 380
           + ++AS D+T C +D+S+     +V DA T   G        ++H     + G+   +  
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 381 VKIWDVKSQANVAK----FDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLK-NF 433
           + IWD +S  N +K     D H   V  +SF+  + + LAT + D  V LWDLR LK   
Sbjct: 252 LMIWDTRSN-NTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 310
Query: 434 RSFESSDSE 442
            SFES   E
Sbjct: 311 HSFESHKDE 319

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 24/229 (10%)
Query: 237 VIATGGVDTNAVLFDR--------PSGQIVT--TLSGHSKKVTSVKFVTE--GDLFLTGS 284
           +IAT    ++ ++FD         PSG+      L GH K+   + + +   G L L+ S
Sbjct: 141 IIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL-LSAS 199
Query: 285 ADKTVRVWQ---GSEDGNY-DCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDL 339
            D TV +W    G ++G   D K     H+A V+ V  H  ++  F + + D     +D 
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDT 259
Query: 340 SSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKS-QANVAKFDG 397
            S    T       D         +F+P    IL TG+++  V +WD+++ +  +  F+ 
Sbjct: 260 RSNT--TSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 317
Query: 398 HVGAVTAISFS-ENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETP 444
           H   +  + +S  N   LA++  D  + +WDL K+   +S E ++   P
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	504
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.81
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.78
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.76
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.75
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.74
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.7
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.69
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.69
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.62
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.61
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.6
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.58
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.56
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.56
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.55
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.54
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.53
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.53
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.51
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.51
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.49
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.48
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.47
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.46
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.46
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.41
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.41
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.39
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.35
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.35
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.3
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.29
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.28
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.27
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.2
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.18
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.18
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.17
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.16
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.14
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.12
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.11
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.11
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.09
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.07
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.06
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.06
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.05
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.04
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.03
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.03
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.0
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	98.99
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.97
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.97
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.96
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.95
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.94
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.94
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.94
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.94
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.88
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.87
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.84
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.83
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.81
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.8
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.77
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.76
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.75
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.7
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.69
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.69
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.67
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.67
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.66
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.66
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.66
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.64
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.63
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.62
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.61
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.59
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.59
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.58
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.55
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.55
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.54
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.54
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.53
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.53
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.53
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.52
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.5
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.5
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.49
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.49
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.48
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.48
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.48
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.48
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.47
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.46
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.46
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.43
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.43
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.43
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.42
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.42
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.39
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.38
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.37
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.36
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.35
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.35
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.35
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.35
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.34
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.33
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.33
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.3
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.29
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.29
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.29
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.28
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.27
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.27
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.25
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.23
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.21
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.19
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.16
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.15
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.14
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.13
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.11
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.11
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.07
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.07
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.05
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.0
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	97.99
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.99
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.93
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.92
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.92
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.92
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	97.92
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.9
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.89
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.89
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	97.89
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	97.85
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	97.83
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.83
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.81
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	97.8
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.8
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	97.8
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.79
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.75
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.69
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.68
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	97.68
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	97.65
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.6
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.56
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.52
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	97.46
3ott_A	758	Two-component system sensor histidine kinase; beta	97.46
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.44
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.42
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.41
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.39
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.38
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	97.35
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	97.33
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.31
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.3
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.29
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.29
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.27
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.25
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.23
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.2
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	97.17
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.05
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.02
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.95
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.94
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.93
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	96.92
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	96.86
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.81
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.79
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.78
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.62
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.61
3ott_A	758	Two-component system sensor histidine kinase; beta	96.61
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.54
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.53
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	96.52
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.47
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.41
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.37
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.33
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.31
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.22
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.15
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	96.08
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	95.95
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	95.87
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.84
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.71
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.67
2kkx_A	102	Uncharacterized protein ECS2156; methods developme	95.61
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	95.59
2ea5_A	68	Cell growth regulator with ring finger domain prot	95.53
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	95.28
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.18
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.97
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.84
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	94.69
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.27
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	94.25
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.87
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	91.88
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	91.34
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	89.36
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.13
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.78
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	87.45
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	87.02
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	86.19
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	85.9
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.74
3ra3_A	28	P1C; coiled coil domain, fiber, KIH interactions,	83.87
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	83.44
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	83.44

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.8e-46  Score=366.50  Aligned_cols=272  Identities=21%  Similarity=0.323  Sum_probs=248.7

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|...|++++|+|++++|++|+.||.|++||..+++.+..+..|...|.+++|+|++++|++|+.|+.|++|++.+..
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~  130 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999997642


Q ss_pred             -CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          299 -NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       299 -~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                       .......+.+|.+.|.++.|++++. +++++.|+.|++||+++++....+.     +|...|.+++|+|++.+|++|+.
T Consensus       131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sg~~  204 (340)
T 1got_B          131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT-----GHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc-----CCCCceEEEEECCCCCEEEEEeC
Confidence             2345567789999999999998765 8999999999999999999887775     67789999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY  456 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~  456 (504)
                      ||.|++||++++..+..+.+|...|++++|+|+|.+|++|+.|+ |++||+++++.+..+........|.+++|+|+|++
T Consensus       205 d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  284 (340)
T 1got_B          205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred             CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE
Confidence            99999999999999999999999999999999999999999998 99999999888777765444567999999999999


Q ss_pred             EEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          457 LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       457 l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      |++|+.|  |++||+    ..+..+..+.+|  .+.|++++|+|+|+.
T Consensus       285 l~~g~~d~~i~vwd~----~~~~~~~~~~~h--~~~v~~~~~s~dg~~  326 (340)
T 1got_B          285 LLAGYDDFNCNVWDA----LKADRAGVLAGH--DNRVSCLGVTDDGMA  326 (340)
T ss_dssp             EEEEETTSEEEEEET----TTCCEEEEEECC--SSCEEEEEECTTSSC
T ss_pred             EEEECCCCeEEEEEc----ccCcEeeEeecC--CCcEEEEEEcCCCCE
Confidence            9999998  999998    667888999999  889999999999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4e-46  Score=373.53  Aligned_cols=268  Identities=22%  Similarity=0.408  Sum_probs=252.0

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|..+|++++|+|++++|++|+.||.|++||+.+++....+.+|.+.|++++|+|++++|++|+.||+|++||+.+. 
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~-  182 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF-  182 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS-
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-
Confidence            4679999999999999999999999999999999999999999999999999999999999999999999999999875 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                        .++..+.+|...|.+++|+|++++|++|+.|++|++||++++.++..+.     +|...|.++.|+|+|.+|++|+.|
T Consensus       183 --~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~~~~g~~l~s~s~D  255 (410)
T 1vyh_C          183 --ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-----GHREWVRMVRPNQDGTLIASCSND  255 (410)
T ss_dssp             --CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             --ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-----CCCccEEEEEECCCCCEEEEEcCC
Confidence              6788889999999999999999999999999999999999999888876     677899999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCC--------------------CcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSEN--------------------GYYLATAAHDG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--------------------g~~l~s~~~d~-v~vwd~~~~~~~~~~~  437 (504)
                      |.|++||+++++....+.+|...|.+++|+|+                    |.+|++|+.|+ |++||++++.++..+.
T Consensus       256 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~  335 (410)
T 1vyh_C          256 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  335 (410)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence            99999999999999999999999999999996                    67899999998 9999999999988887


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .|  ...|.+++|+|+|.+|++|+.|  |++||+    ..++++..+.+|  .+.|++++|+|+|+.
T Consensus       336 ~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~----~~~~~~~~~~~h--~~~v~~l~~~~~~~~  394 (410)
T 1vyh_C          336 GH--DNWVRGVLFHSGGKFILSCADDKTLRVWDY----KNKRCMKTLNAH--EHFVTSLDFHKTAPY  394 (410)
T ss_dssp             CC--SSCEEEEEECSSSSCEEEEETTTEEEEECC----TTSCCCEEEECC--SSCEEEEEECSSSSC
T ss_pred             CC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEEC----CCCceEEEEcCC--CCcEEEEEEcCCCCE
Confidence            76  6789999999999999999999  999998    677889999999  889999999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.2e-42  Score=330.91  Aligned_cols=268  Identities=18%  Similarity=0.287  Sum_probs=244.1

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|.+.|.+++|+|++++|++|+.||.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+.++
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~   87 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG   87 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEE-EEeecCCCCCCCCCeEEEEECC-CCCEEEEE
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL-TQVSDAGTDGRPEGYTSAAFHP-DGLILGTG  375 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g  375 (504)
                         ..+..+.+|.+.|.+++|+|++++|++|+.||+|++||++++... ..+.     +|...|.+++|+| ++.+|++|
T Consensus        88 ---~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-----~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           88 ---EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-----GHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             ---CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-----CCCSCEEEEEECTTCTTEEEEE
T ss_pred             ---cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-----ccCCcEEEEEECCCCCCEEEEE
Confidence               677888999999999999999999999999999999999987444 3333     6788999999999 78999999


Q ss_pred             eCCCcEEEEEcCCCceeeeee-CCCCCeEEEEEcC--CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669          376 TSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~--~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      +.||.|++||++.+.....+. +|...+..+.|+|  ++.+|++|+.|+ |++||+++++++..+..|  ...|.+++|+
T Consensus       160 s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h--~~~v~~~~~~  237 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFH  237 (304)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEEC
T ss_pred             eCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC--CCCEEEEEEC
Confidence            999999999998887766654 4667899999987  778999999999 999999999999888876  6789999999


Q ss_pred             CCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          452 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       452 ~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      |++.+|++|+.|  |++||+    .+++++.++..|  ...+.+++++|+|.
T Consensus       238 p~~~~l~s~s~Dg~i~iWd~----~~~~~~~~~~~~--~~~~~~~~~~~~~~  283 (304)
T 2ynn_A          238 PTLPIIISGSEDGTLKIWNS----STYKVEKTLNVG--LERSWCIATHPTGR  283 (304)
T ss_dssp             SSSSEEEEEETTSCEEEEET----TTCCEEEEECCS--SSSEEEEEECTTCG
T ss_pred             CCCCEEEEEcCCCeEEEEEC----CCCceeeeccCC--CccEEEEEECCCCC
Confidence            999999999999  999998    778999999988  78999999999885

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.8e-42  Score=330.06  Aligned_cols=268  Identities=19%  Similarity=0.323  Sum_probs=244.4

Q ss_pred             ccCCCCCeEEEEeccC----CCEEEEEeCCCcEEEEcCCCCce--EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669          219 HKTSKPGIVSLDIHYS----KDVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW  292 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~----~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iw  292 (504)
                      ..+|.+.|++++|+|+    +.+|++|+.||+|+||++.+++.  ...+.+|...|.+++|++++.++++++.|++|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW  107 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW  107 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            4679999999999985    56999999999999999877653  45688999999999999999999999999999999


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      |+.++   ..+..+..|...+.+++|+|++++|++++.||.|++||+++++....+.     .+...+.+++|+|+|++|
T Consensus       108 d~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-----~~~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          108 DLENG---KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-----TRGKFILSIAYSPDGKYL  179 (321)
T ss_dssp             ETTTT---EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-----CSSSCEEEEEECTTSSEE
T ss_pred             ECCCC---CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-----CCCceEEEEEECCCCCEE
Confidence            99886   6777788888999999999999999999999999999999998887775     455689999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669          373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       373 ~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      ++|+.||.|++||+++++.+..+.+|..+|++++|+|++.+|++++.|+ |++||++++.....+..+  ...|.+++|+
T Consensus       180 asg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~s  257 (321)
T 3ow8_A          180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVAFC  257 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEEEEEC
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEEEEEC
Confidence            9999999999999999999999999999999999999999999999998 999999999888877765  6789999999


Q ss_pred             CCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          452 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       452 ~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      |++.+|++++.|  |+|||+    .+++++.++.+|  .+.|.+++|+++|+.
T Consensus       258 p~~~~l~s~s~D~~v~iwd~----~~~~~~~~~~~h--~~~v~~v~~s~~g~~  304 (321)
T 3ow8_A          258 PDDTHFVSSSSDKSVKVWDV----GTRTCVHTFFDH--QDQVWGVKYNGNGSK  304 (321)
T ss_dssp             TTSSEEEEEETTSCEEEEET----TTTEEEEEECCC--SSCEEEEEECTTSSE
T ss_pred             CCCCEEEEEeCCCcEEEEeC----CCCEEEEEEcCC--CCcEEEEEECCCCCE
Confidence            999999999999  999998    778999999998  889999999999863

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.8e-41  Score=329.87  Aligned_cols=274  Identities=21%  Similarity=0.281  Sum_probs=249.1

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|...|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++.+|++|+.|+.+++|++...
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~  138 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD  138 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCC
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999998653


Q ss_pred             C---CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC--CCCEE
Q 010669          298 G---NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLIL  372 (504)
Q Consensus       298 ~---~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--dg~~l  372 (504)
                      .   .......+.+|...|.++.|+|++..|++++.||+|++||+++++.+..+.     +|...|.+++|+|  +|++|
T Consensus       139 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          139 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-----GHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             TTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECCCSSCCEE
T ss_pred             ccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-----CCCCCeEEEEEEeCCCCCEE
Confidence            1   123456677899999999999999999999999999999999999888876     6778899999988  57899


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669          373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       373 ~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      ++|+.||.|++||+++++++..+.+|...|++++|+|++.+|++++.|+ |++||++..+.+..+..+.....+.+++|+
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s  293 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS  293 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence            9999999999999999999999999999999999999999999999998 999999998877766654445678999999


Q ss_pred             CCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          452 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       452 ~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      |+|.+|++|+.|  |++||+    .++..+..+.+|  .+.|++++|+|+|+.
T Consensus       294 ~~g~~l~~g~~d~~i~vwd~----~~~~~~~~l~~h--~~~v~~l~~spdg~~  340 (354)
T 2pbi_B          294 LSGRLLFAGYNDYTINVWDV----LKGSRVSILFGH--ENRVSTLRVSPDGTA  340 (354)
T ss_dssp             TTSSEEEEEETTSCEEEEET----TTCSEEEEECCC--SSCEEEEEECTTSSC
T ss_pred             CCCCEEEEEECCCcEEEEEC----CCCceEEEEECC--CCcEEEEEECCCCCE
Confidence            999999999988  999998    667888899999  889999999999964

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.7e-41  Score=331.74  Aligned_cols=279  Identities=19%  Similarity=0.323  Sum_probs=244.9

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|...|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++++|++|+.|+.|++||+...
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~  140 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ  140 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999998653


Q ss_pred             ----CCcceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCE
Q 010669          298 ----GNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLI  371 (504)
Q Consensus       298 ----~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~  371 (504)
                          +.......+.+|.+.|.++.|+|++ ..|++|+.|++|++||+++++.+..+......+|...+.+++|++ ++.+
T Consensus       141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  220 (380)
T 3iz6_a          141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM  220 (380)
T ss_dssp             SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred             ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE
Confidence                1223455678999999999999974 579999999999999999999887774333357888999999987 8999


Q ss_pred             EEEEeCCCcEEEEEcC-CCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCC-----CCC
Q 010669          372 LGTGTSEALVKIWDVK-SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-----ETP  444 (504)
Q Consensus       372 l~~g~~dg~I~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~-----~~~  444 (504)
                      |++|+.||.|++||++ .++.+..+.+|.+.|++++|+|+|.+|++|+.|+ |++||+++++.+..+..+..     ...
T Consensus       221 l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  300 (380)
T 3iz6_a          221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI  300 (380)
T ss_dssp             EEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred             EEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCc
Confidence            9999999999999998 4577888999999999999999999999999998 99999999988877755321     234


Q ss_pred             eeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEc----cCCCCCCceeEEEEeecCcc
Q 010669          445 TNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF----PDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       445 v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~----~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +.+++|+|+|.+|++|+.|  |++||+    ...+.+..+    .+|  .+.|++++|+|+|+.
T Consensus       301 v~~~~~s~~g~~l~~g~~dg~i~vwd~----~~~~~~~~~~~~~~~h--~~~v~~l~~s~dg~~  358 (380)
T 3iz6_a          301 VTSVAFSISGRLLFAGYSNGDCYVWDT----LLAEMVLNLGTLQNSH--EGRISCLGLSSDGSA  358 (380)
T ss_dssp             CSEEEECSSSSEEEEECTTSCEEEEET----TTCCEEEEECCSCSSC--CCCCCEEEECSSSSE
T ss_pred             eEEEEECCCCCEEEEEECCCCEEEEEC----CCCceEEEEecccCCC--CCceEEEEECCCCCE
Confidence            8999999999999999988  999998    556666665    567  889999999999964

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.8e-39  Score=312.65  Aligned_cols=270  Identities=21%  Similarity=0.407  Sum_probs=242.8

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|...|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++|+.||.|++||+.++ 
T Consensus        19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-   97 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-   97 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-
T ss_pred             EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC-
Confidence            5679999999999999999999999999999999999999999999999999999999999999999999999999876 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                        .++..+.+|...|.++.|+|++++|++|+.||.|++||+++++....+.     .|...|.+++|+|++.+|++|+.|
T Consensus        98 --~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           98 --KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             --CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             --cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-----CCCCcEEEEEEcCCCCEEEEEeCC
Confidence              6778888999999999999999999999999999999999998887775     567789999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeee-CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEE-CCCCC
Q 010669          379 ALVKIWDVKSQANVAKFD-GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF-DHSGS  455 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~-~~~g~  455 (504)
                      |.|++||+++++.+..+. .+...+..++|+|++.+|++++.|+ |++||+++++.+..+..+..........| .+++.
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK  250 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred             CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence            999999999998877764 4567899999999999999999998 99999999998888876643322233334 46789


Q ss_pred             EEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          456 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       456 ~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +|++|+.|  |++|++    .+.+.+..+.+|  .+.|.+++|.|+++.
T Consensus       251 ~l~sg~~dg~i~vwd~----~~~~~~~~~~~h--~~~v~~~~~~p~~~~  293 (312)
T 4ery_A          251 WIVSGSEDNLVYIWNL----QTKEIVQKLQGH--TDVVISTACHPTENI  293 (312)
T ss_dssp             EEEECCTTSCEEEEET----TTCCEEEEECCC--SSCEEEEEECSSSSE
T ss_pred             EEEEECCCCEEEEEEC----CCchhhhhhhcc--CCcEEEEeecCcCCc
Confidence            99999988  999998    678889999999  889999999998864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.5e-39  Score=311.90  Aligned_cols=269  Identities=21%  Similarity=0.368  Sum_probs=235.9

Q ss_pred             cccCCCCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCC-----CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669          218 LHKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPS-----GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV  291 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~i  291 (504)
                      ...+|.+.|++++|+|++ ++|++|+.||+|++|++..     +..+..+.+|...|.+++|+|++++|++|+.|++|++
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~   91 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL   91 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence            356899999999999965 8999999999999999753     3456788999999999999999999999999999999


Q ss_pred             EeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC---
Q 010669          292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD---  368 (504)
Q Consensus       292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd---  368 (504)
                      ||+.++   .....+.+|...|.+++|+|++.+|++|+.|++|++||++.. .+..+.     +|...+.++.|+|.   
T Consensus        92 wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~-----~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           92 WDVATG---ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLL-----GHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             EETTTT---EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEEC-----CCSSCEEEEEECCC---
T ss_pred             EECCCC---CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEe-----ccCCcEEEEEEccCCCC
Confidence            999886   677888999999999999999999999999999999999754 444443     67789999999994   


Q ss_pred             ---CCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC
Q 010669          369 ---GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP  444 (504)
Q Consensus       369 ---g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~  444 (504)
                         +..+++++.|+.|++||+++++....+.+|...|++++|+|+|.+|++++.|+ |++||+++++.+..+..+   ..
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~  239 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DE  239 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SC
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---Cc
Confidence               45899999999999999999999999999999999999999999999999999 999999999988888753   57


Q ss_pred             eeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCC------CCCCceeEEEEeecCcc
Q 010669          445 TNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL------SGTGAASFLFLFVLGQT  502 (504)
Q Consensus       445 v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h------~~~~~v~~l~~~~~g~~  502 (504)
                      +.+++|+|++.+|++++.+ +++|++    .....+..+..+      .+...+.+++|+|+|+.
T Consensus       240 v~~~~~sp~~~~la~~~~~~i~v~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  300 (319)
T 3frx_A          240 VFSLAFSPNRYWLAAATATGIKVFSL----DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT  300 (319)
T ss_dssp             EEEEEECSSSSEEEEEETTEEEEEEE----TTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEEe----CcCeeeeccCccccccccCcCcceeEEEECCCCCE
Confidence            9999999999999999988 999998    444455544322      11567899999999975

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-39  Score=312.97  Aligned_cols=241  Identities=20%  Similarity=0.391  Sum_probs=227.5

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|...|.+++|++++.++++|+.||+|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++|++..+ 
T Consensus        76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~-  154 (321)
T 3ow8_A           76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG-  154 (321)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC-
T ss_pred             eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC-
Confidence            5689999999999999999999999999999999999999999999999999999999999999999999999999876 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                        .....+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+.     +|...|.+++|+|++.+|++|+.|
T Consensus       155 --~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~d  227 (321)
T 3ow8_A          155 --KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-----GHAMPIRSLTFSPDSQLLVTASDD  227 (321)
T ss_dssp             --SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCCCEEEECTTSCEEEEECTT
T ss_pred             --ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-----ccCCceeEEEEcCCCCEEEEEcCC
Confidence              5667778888999999999999999999999999999999999888775     677899999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEE
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL  457 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l  457 (504)
                      |.|++||+++++.+..+.+|...|.+++|+|+|.+|++++.|+ |++||+++++++..+..+  ...|.+++|+|+|.+|
T Consensus       228 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g~~l  305 (321)
T 3ow8_A          228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNGSKI  305 (321)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEE
T ss_pred             CeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECCCCCEE
Confidence            9999999999999999999999999999999999999999998 999999999998888765  6789999999999999


Q ss_pred             EEEeCc--EEEEEe
Q 010669          458 AVASAD--IRVYQV  469 (504)
Q Consensus       458 ~~~~~d--i~vw~~  469 (504)
                      ++++.|  |+|||+
T Consensus       306 ~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          306 VSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEETTCCEEEEEC
T ss_pred             EEEeCCCeEEEEeC
Confidence            999999  999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.2e-39  Score=314.26  Aligned_cols=277  Identities=18%  Similarity=0.282  Sum_probs=228.5

Q ss_pred             ccCCCC-CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE---EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669          219 HKTSKP-GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT---TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       219 ~~~~~~-~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~  294 (504)
                      ..+|.. .|.+++|+|+|++|++|+.||+|+|||+.++....   ...+|...|.+++|+|++++|++|+.|++|++||.
T Consensus        11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~   90 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK   90 (345)
T ss_dssp             ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence            346766 89999999999999999999999999998775432   33689999999999999999999999999999998


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      ..+ ...+...+.+|...|.+++|+|++++|++|+.|+.|++||++++.....+..  ..+|...|.+++|+|++.+|++
T Consensus        91 ~~~-~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A           91 NQD-DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV--LNSHTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             CCC--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE--ECCCCSCEEEEEECSSSSCEEE
T ss_pred             cCC-CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE--ecCcCCCeEEEEECCCCCEEEE
Confidence            763 3356778889999999999999999999999999999999987643222111  1267789999999999999999


Q ss_pred             EeCCCcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc---------------ceeee
Q 010669          375 GTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK---------------NFRSF  436 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~---------------~~~~~  436 (504)
                      |+.||.|++||++.++  +...+.+|...|++++|+|+|.+|++++.|+ |++||.....               ++..+
T Consensus       168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (345)
T 3fm0_A          168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL  247 (345)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred             EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence            9999999999998775  4567889999999999999999999999998 9999974321               12222


Q ss_pred             ecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccce-----eEEEccCCCCCCceeEEEEeecCc
Q 010669          437 ESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN-----CIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       437 ~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~-----~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      .. .+...|.+++|+|++.+|++++.|  +++|+.........     ....+.+|  .+.|++++|+|++.
T Consensus       248 ~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~~~p~~~  316 (345)
T 3fm0_A          248 SG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH--SQDVNCVAWNPKEP  316 (345)
T ss_dssp             CS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS--SSCEEEEEECSSST
T ss_pred             cC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc--cCcEeEeEEeCCCc
Confidence            22 136789999999999999999998  99999855332221     12334677  88999999999874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.8e-39  Score=323.81  Aligned_cols=242  Identities=22%  Similarity=0.446  Sum_probs=227.5

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+.++
T Consensus       145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~  224 (410)
T 1vyh_C          145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG  224 (410)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred             EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC---------
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD---------  368 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd---------  368 (504)
                         .++..+.+|...|.++.|+|++.+|++|+.||.|++||+.++.....+.     +|...|.+++|+|+         
T Consensus       225 ---~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~  296 (410)
T 1vyh_C          225 ---YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-----EHRHVVECISWAPESSYSSISEA  296 (410)
T ss_dssp             ---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECCSCGGGGGGGC
T ss_pred             ---cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec-----CCCceEEEEEEcCcccccchhhh
Confidence               6788889999999999999999999999999999999999998887775     67789999999996         


Q ss_pred             -----------CCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeee
Q 010669          369 -----------GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF  436 (504)
Q Consensus       369 -----------g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~  436 (504)
                                 |.+|++|+.||.|++||++++.++..+.+|...|++++|+|+|.+|++|+.|+ |++||+++++.+..+
T Consensus       297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~  376 (410)
T 1vyh_C          297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  376 (410)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             ccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence                       67899999999999999999999999999999999999999999999999999 999999999998888


Q ss_pred             ecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          437 ESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       437 ~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      ..|  ...|++++|+|++.+|++|+.|  |+||++
T Consensus       377 ~~h--~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          377 NAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ECC--SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             cCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            776  6789999999999999999999  999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-38  Score=310.66  Aligned_cols=271  Identities=18%  Similarity=0.316  Sum_probs=227.1

Q ss_pred             cccCCCCCeEEEEe-----cc-CCCEEEEEeCCCcEEEEcCCCC-------ceEEEcccCccceeEEEEeeCCCEEEEEe
Q 010669          218 LHKTSKPGIVSLDI-----HY-SKDVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTEGDLFLTGS  284 (504)
Q Consensus       218 ~~~~~~~~I~~~~~-----s~-~~~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s  284 (504)
                      ...+|...|++++|     ++ ++++|++|+.||+|++||+.+.       .....+.+|...|.+++|+|++.++++|+
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s   95 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS   95 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence            45689999999999     76 8999999999999999998643       45678899999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEE
Q 010669          285 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA  364 (504)
Q Consensus       285 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  364 (504)
                      .|++|++||+.++   .....+.+|...|.+++|+|++++|++++.|+.|++||+...... ...  ....|...+.+++
T Consensus        96 ~D~~v~lwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-~~~--~~~~~~~~v~~~~  169 (343)
T 2xzm_R           96 WDKTLRLWDLRTG---TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-SSA--EKENHSDWVSCVR  169 (343)
T ss_dssp             TTSEEEEEETTSS---CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-ECC--TTTSCSSCEEEEE
T ss_pred             CCCcEEEEECCCC---cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-eee--cccCCCceeeeee
Confidence            9999999999886   677888899999999999999999999999999999999854332 221  1236778899999


Q ss_pred             ECCCC----------CEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC-cc
Q 010669          365 FHPDG----------LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KN  432 (504)
Q Consensus       365 ~~pdg----------~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~-~~  432 (504)
                      |+|++          .+|++++.||.|++|| ...+....+.+|...|++++|+|+|.+|++|+.|+ |++||++.. ..
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~  248 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP  248 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred             eccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence            99987          7999999999999999 45667778899999999999999999999999999 999999543 33


Q ss_pred             eeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEcc-----------CCCCCCceeEEEEeecC
Q 010669          433 FRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFP-----------DLSGTGAASFLFLFVLG  500 (504)
Q Consensus       433 ~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~-----------~h~~~~~v~~l~~~~~g  500 (504)
                      ...+..   ...|.+++|+|++.++++++.+ +++|++.....  ..+..+.           +|  ...|++++|+|+|
T Consensus       249 ~~~~~~---~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g  321 (343)
T 2xzm_R          249 QREFDA---GSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK--APVCTIEAEPITKAEGQKGK--NPQCTSLAWNALG  321 (343)
T ss_dssp             SEEEEC---SSCEEEEEECSSSCEEEEEESSCEEEEESSSCCS--CSEEECCCCSGGGBTTBCCS--CCCEEEEEECSSS
T ss_pred             ceeecC---CCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCC--CceEEeecCcchhhhhhcCC--CCceEEEEECCCC
Confidence            343432   3569999999999999888766 99999843221  1122333           55  7789999999999


Q ss_pred             cc
Q 010669          501 QT  502 (504)
Q Consensus       501 ~~  502 (504)
                      +.
T Consensus       322 ~~  323 (343)
T 2xzm_R          322 KK  323 (343)
T ss_dssp             CC
T ss_pred             Ce
Confidence            74

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.9e-39  Score=312.72  Aligned_cols=265  Identities=14%  Similarity=0.141  Sum_probs=217.8

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC-----------CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcE
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-----------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTV  289 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~-----------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i  289 (504)
                      .|...|.+++|+|||++|++++ |+++++||...           .........|...|.+++|+|++ .|++|+.||+|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v  105 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV  105 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence            4566799999999999999887 66777776210           01111112356779999999985 68899999999


Q ss_pred             EEEeCCCCCCcc-eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669          290 RVWQGSEDGNYD-CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       290 ~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd  368 (504)
                      +|||+.++.... ......+|.+.|.+++|+|++++|++|+.||+|++||+++++.+..+.     +|...|.+++|+|+
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~-----~h~~~V~~~~~~~~  180 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-----AHAAQVTCVAASPH  180 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECSS
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-----CcCCceEEEEecCC
Confidence            999998764322 223345899999999999999999999999999999999999988876     78899999999998


Q ss_pred             C-CEEEEEeCCCcEEEEEcCCCceeeeee--CCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCC
Q 010669          369 G-LILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET  443 (504)
Q Consensus       369 g-~~l~~g~~dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~  443 (504)
                      + .+|++|+.||.|++||+++++....+.  .|...+++++|+| ++.+|++|+.|+ |++||+++++.+..+..|  ..
T Consensus       181 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h--~~  258 (344)
T 4gqb_B          181 KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH--SQ  258 (344)
T ss_dssp             CTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC--SS
T ss_pred             CCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC--CC
Confidence            7 578999999999999999999887764  3556799999999 467899999998 999999999999988876  67


Q ss_pred             CeeEEEECCCC-CEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          444 PTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       444 ~v~~i~~~~~g-~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      .|++++|+|+| ++|++|+.|  |+|||+    ..+++ ..+.+|  .+.|++++|+|+|+
T Consensus       259 ~v~~v~fsp~g~~~lasgs~D~~i~vwd~----~~~~~-~~~~~H--~~~V~~v~~sp~~~  312 (344)
T 4gqb_B          259 CVTGLVFSPHSVPFLASLSEDCSLAVLDS----SLSEL-FRSQAH--RDFVRDATWSPLNH  312 (344)
T ss_dssp             CEEEEEECSSSSCCEEEEETTSCEEEECT----TCCEE-EEECCC--SSCEEEEEECSSST
T ss_pred             CEEEEEEccCCCeEEEEEeCCCeEEEEEC----CCCcE-EEEcCC--CCCEEEEEEeCCCC
Confidence            89999999998 689999998  999998    44554 456788  88999999999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.4e-39  Score=312.54  Aligned_cols=239  Identities=20%  Similarity=0.261  Sum_probs=207.2

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE----cccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT----LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~----~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      |..+|.+++|+|++ .|++|+.||.|+|||+.+++.+..    +.+|.+.|++++|+|++++|++|+.||+|++||+.++
T Consensus        81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~  159 (344)
T 4gqb_B           81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ  159 (344)
T ss_dssp             ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            56789999999985 678999999999999998865433    4589999999999999999999999999999999886


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEE
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTG  375 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g  375 (504)
                         .++..+.+|.+.|.+++|+|++. +|++++.||+|++||+++++....+...   .+...+.+++|+| ++.+|++|
T Consensus       160 ---~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~l~sg  233 (344)
T 4gqb_B          160 ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS---APGYLPTSLAWHPQQSEVFVFG  233 (344)
T ss_dssp             ---EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEE
T ss_pred             ---cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc---eeeccceeeeecCCCCcceEEe
Confidence               78889999999999999999885 7899999999999999999888776522   4456799999999 56789999


Q ss_pred             eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCC-cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669          376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~  453 (504)
                      +.||.|++||+++++++..+.+|...|++++|+|+| .+|++|+.|+ |+|||+++++.+. +..  |...|++++|+|+
T Consensus       234 ~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~--H~~~V~~v~~sp~  310 (344)
T 4gqb_B          234 DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQA--HRDFVRDATWSPL  310 (344)
T ss_dssp             ETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECC--CSSCEEEEEECSS
T ss_pred             ccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcC--CCCCEEEEEEeCC
Confidence            999999999999999999999999999999999997 5899999998 9999999887543 433  4789999999999


Q ss_pred             CC-EEEEEeCc--EEEEEee
Q 010669          454 GS-YLAVASAD--IRVYQVA  470 (504)
Q Consensus       454 g~-~l~~~~~d--i~vw~~~  470 (504)
                      +. +|++++.|  |++|++.
T Consensus       311 ~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          311 NHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             STTEEEEEETTSCEEEEECC
T ss_pred             CCeEEEEEcCCCeEEEEECC
Confidence            86 56788888  9999984

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.7e-38  Score=313.89  Aligned_cols=261  Identities=21%  Similarity=0.386  Sum_probs=228.5

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCcc------------------ceeEEEEeeCCCEEEE
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK------------------KVTSVKFVTEGDLFLT  282 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~------------------~v~~l~~s~~~~~l~s  282 (504)
                      .|...|.+++|+|+|++|++|+ ++.+++|++.+++.+..+..|..                  .|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            5889999999999999999987 68999999999998888765542                  4899999999999999


Q ss_pred             EeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669          283 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       283 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  362 (504)
                      |+.||+|++||+.++   .....+.+|...|.+++|+|++++|++++.|++|++||+++++....+.      +...+.+
T Consensus       141 ~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------~~~~v~~  211 (393)
T 1erj_A          141 GAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS------IEDGVTT  211 (393)
T ss_dssp             EETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEE
T ss_pred             EcCCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE------cCCCcEE
Confidence            999999999999875   6778889999999999999999999999999999999999998877764      2357999


Q ss_pred             EEECC-CCCEEEEEeCCCcEEEEEcCCCceeeee-------eCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc--
Q 010669          363 AAFHP-DGLILGTGTSEALVKIWDVKSQANVAKF-------DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK--  431 (504)
Q Consensus       363 ~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~~~~~-------~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~--  431 (504)
                      ++|+| ++.+|++|+.||.|++||++++..+..+       .+|...|.+++|+|+|.+|++|+.|+ |++||+++..  
T Consensus       212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~  291 (393)
T 1erj_A          212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK  291 (393)
T ss_dssp             EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCc
Confidence            99999 9999999999999999999998887766       57889999999999999999999998 9999998643  


Q ss_pred             ----------ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          432 ----------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       432 ----------~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                                +...+..+  ...|.+++|+|++.+|++|+.|  |++||+    .+++.+..+.+|  .+.|.+++|++.
T Consensus       292 ~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~----~~~~~~~~l~~h--~~~v~~v~~~~~  363 (393)
T 1erj_A          292 SDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDK----KSGNPLLMLQGH--RNSVISVAVANG  363 (393)
T ss_dssp             ---------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEET----TTCCEEEEEECC--SSCEEEEEECSS
T ss_pred             ccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEEC----CCCeEEEEECCC--CCCEEEEEecCC
Confidence                      23344443  6789999999999999999999  999998    678889999999  889999998863

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.7e-38  Score=302.55  Aligned_cols=258  Identities=20%  Similarity=0.315  Sum_probs=215.4

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC--CceEEEcccCccceeEEEEee--CCCEEEEEeCCCcEEEEe
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS--GQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~s~dg~i~iwd  293 (504)
                      +..+|...|.+++|+|+|++|++|+.||+|+|||+..  .+.+.++.+|.+.|++++|++  ++++|++|+.||+|++||
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            3567999999999999999999999999999999874  467889999999999999986  488999999999999999


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeE--EEEeecCCCCCCCCCeEEEEECCC-
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPD-  368 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~pd-  368 (504)
                      +.++ .......+.+|...|.+++|+|+  +.+|++++.||.|++||++++..  ...+.     +|...|.+++|+|+ 
T Consensus        84 ~~~~-~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-----~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           84 EENG-RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-----AHAIGVNSASWAPAT  157 (297)
T ss_dssp             BSSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-----CCSSCEEEEEECCCC
T ss_pred             cCCC-ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-----cccCccceEeecCCc
Confidence            9864 23455667789999999999997  88999999999999999987632  22222     67788999999997 


Q ss_pred             ------------CCEEEEEeCCCcEEEEEcCCCc----eeeeeeCCCCCeEEEEEcCCC---cEEEEEeCCc-EEEEEcC
Q 010669          369 ------------GLILGTGTSEALVKIWDVKSQA----NVAKFDGHVGAVTAISFSENG---YYLATAAHDG-VKLWDLR  428 (504)
Q Consensus       369 ------------g~~l~~g~~dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~g---~~l~s~~~d~-v~vwd~~  428 (504)
                                  +++|++|+.||.|++||+++++    ....+.+|...|.+++|+|++   .+|++++.|+ |++||++
T Consensus       158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                        5799999999999999998766    566788999999999999984   8999999998 9999998


Q ss_pred             CCcc---eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEc
Q 010669          429 KLKN---FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF  482 (504)
Q Consensus       429 ~~~~---~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~  482 (504)
                      +...   ...+....+...|.+++|+|+|++|++++.|  |+||+.... ..|.++..+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~-g~w~~~~~~  295 (297)
T 2pm7_B          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE-GKWEPAGEV  295 (297)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT-SCEEEC---
T ss_pred             CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC-CcEEecccc
Confidence            7532   1222223346789999999999999999998  999998542 457766654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-37  Score=300.36  Aligned_cols=270  Identities=21%  Similarity=0.365  Sum_probs=215.6

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC--ceEEEc-cc-CccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTL-SG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~-~~-h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~  294 (504)
                      ..+|..+|.+++|+++  +|++|+.||.|++||+..+  .....+ .+ |...|.+++|+|++++|++|+.|++|++||+
T Consensus        10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~   87 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK   87 (330)
T ss_dssp             EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence            5679999999999987  9999999999999999875  445555 44 9999999999999999999999999999998


Q ss_pred             CCCC----CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC----eEEEEeecCCCCCCCCCeEEEEEC
Q 010669          295 SEDG----NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG----ICLTQVSDAGTDGRPEGYTSAAFH  366 (504)
Q Consensus       295 ~~~~----~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~  366 (504)
                      ....    .......+.+|...|.+++|+|++++|++|+.|++|++||++..    +.+..+.     +|...|.+++|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-----~h~~~v~~v~~~  162 (330)
T 2hes_X           88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-----EHSQDVKHVIWH  162 (330)
T ss_dssp             -------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-----CCSSCEEEEEEC
T ss_pred             ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-----cCCCceEEEEEC
Confidence            5421    22466778899999999999999999999999999999999532    3444443     678899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCC--ceeeeeeCCCCCeEEEEEcCC--CcEEEEEeCCc-EEEEEcCCCc--------ce
Q 010669          367 PDGLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSEN--GYYLATAAHDG-VKLWDLRKLK--------NF  433 (504)
Q Consensus       367 pdg~~l~~g~~dg~I~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~--g~~l~s~~~d~-v~vwd~~~~~--------~~  433 (504)
                      |++.+|++|+.||.|++||.+.+  +++..+.+|.+.|.+++|+|+  +.+|++++.|+ |++||++.+.        ..
T Consensus       163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~  242 (330)
T 2hes_X          163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE  242 (330)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence            99999999999999999999776  678889999999999999998  77999999998 9999997642        22


Q ss_pred             eeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEE-ccCCCCCC-ceeEEEEee--cCc
Q 010669          434 RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKT-FPDLSGTG-AASFLFLFV--LGQ  501 (504)
Q Consensus       434 ~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~-~~~h~~~~-~v~~l~~~~--~g~  501 (504)
                      ..+.. .+...|.+++|++++ +|++++.|  |+||+...  ..++.+.. +.+|  .. .|.+++|+|  +|+
T Consensus       243 ~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~--~~~~~~~~~~~~h--~~~~v~~v~~~~~~~~~  310 (330)
T 2hes_X          243 AILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD--GEWKVFAKRALCH--GVYEINVVKWLELNGKT  310 (330)
T ss_dssp             EECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET--TEEEEEEEESCTT--TTSCEEEEEEC-----C
T ss_pred             eeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC--CceEEEecccccc--ccceEEEEEEecCCCce
Confidence            22322 246789999999765 78888888  99999843  23444443 4566  55 899999998  454

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.8e-38  Score=308.77  Aligned_cols=266  Identities=15%  Similarity=0.194  Sum_probs=219.9

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeC------CCcEEEEcCCCCceE----EEcccCccceeEEEEeeCCCEEEEEeCCCcEE
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGV------DTNAVLFDRPSGQIV----TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR  290 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~------dg~i~vwd~~~~~~~----~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~  290 (504)
                      .|...|.+++|+|||++|++|+.      ||.|++|+..++...    ....+|...|++++|+|++. +++++.||+|+
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~  118 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVE  118 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEE
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEE
Confidence            57889999999999999999997      788999998776543    23346888999999999875 56788999999


Q ss_pred             EEeCCCCCCc-ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC
Q 010669          291 VWQGSEDGNY-DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG  369 (504)
Q Consensus       291 iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg  369 (504)
                      |||+.++... .......+|.+.|.+++|+|++++|++|+.||.|++||+++++.+..+.     +|...|++++|+|++
T Consensus       119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~s~~~  193 (357)
T 4g56_B          119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN-----AHSSEVNCVAACPGK  193 (357)
T ss_dssp             EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTC
T ss_pred             EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-----CCCCCEEEEEEccCC
Confidence            9999875321 1223445899999999999999999999999999999999999888875     678899999999987


Q ss_pred             C-EEEEEeCCCcEEEEEcCCCceeeeee--CCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC
Q 010669          370 L-ILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP  444 (504)
Q Consensus       370 ~-~l~~g~~dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~  444 (504)
                      . ++++++.||.|++||+++++++..+.  .|...+++++|+|+ +.+|++|+.|+ |++||+++++.+..+..+  ...
T Consensus       194 ~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~--~~~  271 (357)
T 4g56_B          194 DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH--SQN  271 (357)
T ss_dssp             SSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC--SSC
T ss_pred             CceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc--cee
Confidence            4 78999999999999999988776553  46778999999997 57899999998 999999999998888766  678


Q ss_pred             eeEEEECCCC-CEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee-cCc
Q 010669          445 TNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV-LGQ  501 (504)
Q Consensus       445 v~~i~~~~~g-~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~-~g~  501 (504)
                      |++++|+|++ ++|++|+.|  |+|||+    ..++++..+ +|  .+.|++++|+| +|+
T Consensus       272 v~~l~~sp~~~~~lasgs~D~~i~iwd~----~~~~~~~~~-~H--~~~V~~vafsP~d~~  325 (357)
T 4g56_B          272 ITGLAYSYHSSPFLASISEDCTVAVLDA----DFSEVFRDL-SH--RDFVTGVAWSPLDHS  325 (357)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECT----TSCEEEEEC-CC--SSCEEEEEECSSSTT
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEEC----CCCcEeEEC-CC--CCCEEEEEEeCCCCC
Confidence            9999999987 689999988  999998    566777665 77  88999999998 564

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.1e-37  Score=299.47  Aligned_cols=243  Identities=22%  Similarity=0.365  Sum_probs=219.4

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||+|++||+..  
T Consensus        61 ~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--  138 (319)
T 3frx_A           61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--  138 (319)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--
T ss_pred             EeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--
Confidence            567999999999999999999999999999999999999999999999999999999999999999999999999975  


Q ss_pred             CcceeEEeccCCcCeEEEEEccC------CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHAT------NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                        .+...+.+|...|.++.|+|.      +..+++++.|+.|++||+++++....+.     +|...|.+++|+|+|.+|
T Consensus       139 --~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~sp~g~~l  211 (319)
T 3frx_A          139 --QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-----GHNSNINTLTASPDGTLI  211 (319)
T ss_dssp             --CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-----CCCSCEEEEEECTTSSEE
T ss_pred             --CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-----CCCCcEEEEEEcCCCCEE
Confidence              577788899999999999985      4489999999999999999998877765     678899999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecC------CCCCCee
Q 010669          373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESS------DSETPTN  446 (504)
Q Consensus       373 ~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~------~~~~~v~  446 (504)
                      ++|+.||.|++||+++++.+..+..+ ..|.+++|+|++.+|++++.+++++|++.....+..+...      .+...+.
T Consensus       212 ~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~  290 (319)
T 3frx_A          212 ASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV  290 (319)
T ss_dssp             EEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCccee
Confidence            99999999999999999999888754 6899999999999999999888999999887666555422      1245688


Q ss_pred             EEEECCCCCEEEEEeCc--EEEEEeec
Q 010669          447 SVDFDHSGSYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       447 ~i~~~~~g~~l~~~~~d--i~vw~~~~  471 (504)
                      +++|+|+|++|++|+.|  |+||++.+
T Consensus       291 ~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          291 SLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             EEEECCCCCEEEEeecCceEEEEEEee
Confidence            99999999999999999  99999843

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.4e-38  Score=329.24  Aligned_cols=270  Identities=16%  Similarity=0.228  Sum_probs=234.4

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC--ceEEEcccCccceeEEEEeeCCCEEEEEeCC----CcEEE
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD----KTVRV  291 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d----g~i~i  291 (504)
                      ...+|...|++++|+|+|++|++|+.||+|+|||+.++  .....+.+|.+.|.+++|+|++++|++++.+    +.|++
T Consensus        54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~  133 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL  133 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence            45689999999999999999999999999999998754  3456788999999999999999999998865    47888


Q ss_pred             EeCCCCCCcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669          292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~  370 (504)
                      ||..     .....+.+|...|.+++|+|++. .|++|+.|++|++||..+++....+.     +|...|.+++|+|+|+
T Consensus       134 wd~~-----~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-----~H~~~V~~v~fspdg~  203 (611)
T 1nr0_A          134 FDTG-----TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-----EHTKFVHSVRYNPDGS  203 (611)
T ss_dssp             TTTC-----CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-----CCSSCEEEEEECTTSS
T ss_pred             eeCC-----CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-----cccCceEEEEECCCCC
Confidence            8743     34566789999999999999987 69999999999999999988877765     7888999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeee-------CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec----
Q 010669          371 ILGTGTSEALVKIWDVKSQANVAKFD-------GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES----  438 (504)
Q Consensus       371 ~l~~g~~dg~I~iwd~~~~~~~~~~~-------~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~----  438 (504)
                      +|++|+.||.|++||+.+++.+..+.       +|.+.|.+++|+|+|.+|++++.|+ |++||+++++.+..+..    
T Consensus       204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~  283 (611)
T 1nr0_A          204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI  283 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred             EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc
Confidence            99999999999999999999888874       7999999999999999999999998 99999998776544321    


Q ss_pred             -------------------------------------CCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeE
Q 010669          439 -------------------------------------SDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCI  479 (504)
Q Consensus       439 -------------------------------------~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i  479 (504)
                                                           ..|...|.+++|+|+|++|++++.|  |++||+    .++...
T Consensus       284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~----~~~~~~  359 (611)
T 1nr0_A          284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI----STGISN  359 (611)
T ss_dssp             GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET----TTCCEE
T ss_pred             cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC----CCCcee
Confidence                                                 2346789999999999999999999  999998    556666


Q ss_pred             EEc-cCCCCCCceeEEEEeecCccc
Q 010669          480 KTF-PDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       480 ~~~-~~h~~~~~v~~l~~~~~g~~~  503 (504)
                      ..+ .+|  ...|.+++|++++.++
T Consensus       360 ~~~~~~h--~~~v~~~~~s~~~~l~  382 (611)
T 1nr0_A          360 RVFPDVH--ATMITGIKTTSKGDLF  382 (611)
T ss_dssp             ECSSCSC--SSCEEEEEECTTSCEE
T ss_pred             eecccCC--cceEEEEEECCCCcEE
Confidence            655 456  7899999999887654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.2e-37  Score=297.18  Aligned_cols=243  Identities=20%  Similarity=0.346  Sum_probs=220.4

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ...|..+|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++.
T Consensus        51 ~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~  130 (304)
T 2ynn_A           51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW  130 (304)
T ss_dssp             EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT
T ss_pred             eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999998642


Q ss_pred             CcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC--CCCEEEEE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTG  375 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g  375 (504)
                        .....+.+|...|.+++|+| ++.+|++|+.||+|++||++++.....+..    ++...+..+.|+|  ++.+|++|
T Consensus       131 --~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~  204 (304)
T 2ynn_A          131 --ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT----GQERGVNYVDYYPLPDKPYMITA  204 (304)
T ss_dssp             --EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC----CCTTCEEEEEECCSTTCCEEEEE
T ss_pred             --chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc----CCcCcEEEEEEEEcCCCCEEEEE
Confidence              45567889999999999999 678999999999999999988776655542    4556799999987  78899999


Q ss_pred             eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669          376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG  454 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g  454 (504)
                      +.||.|++||+++++++..+.+|...|.+++|+|++.+|++|+.|+ |++||+++++....+..+  ...+.+++|+|++
T Consensus       205 s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~  282 (304)
T 2ynn_A          205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTG  282 (304)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS--SSSEEEEEECTTC
T ss_pred             cCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC--CccEEEEEECCCC
Confidence            9999999999999999999999999999999999999999999999 999999999998888765  5789999999987


Q ss_pred             C--EEEEEeCc-EEEEEe
Q 010669          455 S--YLAVASAD-IRVYQV  469 (504)
Q Consensus       455 ~--~l~~~~~d-i~vw~~  469 (504)
                      .  ++++|+.+ +.+|++
T Consensus       283 ~~~~~asg~~~g~~~~~~  300 (304)
T 2ynn_A          283 RKNYIASGFDNGFTVLSL  300 (304)
T ss_dssp             GGGCEEEEETTEEEEEEC
T ss_pred             CceEEEEecCCceEEEEe
Confidence            5  68888888 899987

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4e-37  Score=300.23  Aligned_cols=238  Identities=19%  Similarity=0.437  Sum_probs=216.6

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ..|...|.+++|+|++++|++|+.|+.|++|++.++    .....+.+|.+.|.++.|++++. +++++.||+|++||+.
T Consensus        94 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~  172 (340)
T 1got_B           94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE  172 (340)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETT
T ss_pred             ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECC
Confidence            457788999999999999999999999999998765    35667889999999999998775 8999999999999998


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      ++   .....+.+|.+.|.+++|+|++++|++|+.||.|++||++++.....+.     +|...|.+++|+|++++|++|
T Consensus       173 ~~---~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~  244 (340)
T 1got_B          173 TG---QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-----GHESDINAICFFPNGNAFATG  244 (340)
T ss_dssp             TT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-----CCSSCEEEEEECTTSSEEEEE
T ss_pred             CC---cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc-----CCcCCEEEEEEcCCCCEEEEE
Confidence            86   6778889999999999999999999999999999999999998887775     677899999999999999999


Q ss_pred             eCCCcEEEEEcCCCceeeeeeC--CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          376 TSEALVKIWDVKSQANVAKFDG--HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      +.||.|++||+++++.+..+..  +...|++++|+|+|.+|++|+.|+ |++||+.+++.+..+..|  ...|.+++|+|
T Consensus       245 s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~s~  322 (340)
T 1got_B          245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTD  322 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECT
T ss_pred             cCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC--CCcEEEEEEcC
Confidence            9999999999999888777653  335799999999999999999998 999999999888888766  67999999999


Q ss_pred             CCCEEEEEeCc--EEEEE
Q 010669          453 SGSYLAVASAD--IRVYQ  468 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~  468 (504)
                      +|.+|++|+.|  |+||+
T Consensus       323 dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          323 DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEcCCccEEecC
Confidence            99999999999  99996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.3e-37  Score=324.66  Aligned_cols=276  Identities=19%  Similarity=0.279  Sum_probs=229.7

Q ss_pred             cccCCCCCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ...+|...|.+++|+|++. .|++|+.|++|++||..+++....+.+|...|++++|+|++++|++|+.||+|++||+.+
T Consensus       142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~  221 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  221 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence            3567899999999999987 699999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCcceeEEec-------cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecC------------------
Q 010669          297 DGNYDCKHTLK-------DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA------------------  351 (504)
Q Consensus       297 ~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------------  351 (504)
                      +   .+...+.       +|.+.|.+++|+|++++|++++.|++|++||+++++....+...                  
T Consensus       222 g---~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  298 (611)
T 1nr0_A          222 G---TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV  298 (611)
T ss_dssp             C---CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred             C---cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence            5   4555553       79999999999999999999999999999999998776554311                  


Q ss_pred             --------------------CCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee-e--------------
Q 010669          352 --------------------GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-D--------------  396 (504)
Q Consensus       352 --------------------~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~-~--------------  396 (504)
                                          ...+|...|++++|+|+|++|++++.||.|++||+.++.....+ .              
T Consensus       299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~  378 (611)
T 1nr0_A          299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK  378 (611)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred             EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence                                01368889999999999999999999999999999776433221 0              


Q ss_pred             -------------------------------------------------------------------CCCCCeEEEEEcC
Q 010669          397 -------------------------------------------------------------------GHVGAVTAISFSE  409 (504)
Q Consensus       397 -------------------------------------------------------------------~~~~~i~~l~~s~  409 (504)
                                                                                         .|...+.+++|+|
T Consensus       379 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp  458 (611)
T 1nr0_A          379 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN  458 (611)
T ss_dssp             SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT
T ss_pred             CcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC
Confidence                                                                               0234578899999


Q ss_pred             CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEE--ccC
Q 010669          410 NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKT--FPD  484 (504)
Q Consensus       410 ~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~--~~~  484 (504)
                      +|.+|++|+.|+ |++||+..+....... ..|...|.+++|+|+|++|++++.|  +++|++..   .++.+..  +.+
T Consensus       459 dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~---~~~~~~~~~~~~  534 (611)
T 1nr0_A          459 DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN---NFELAHTNSWTF  534 (611)
T ss_dssp             TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG---TTEESCCCCCCC
T ss_pred             CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCC---CCceeeeeeeee
Confidence            999999999998 9999998754321111 2336789999999999999999998  99999832   1444443  334


Q ss_pred             CCCCCceeEEEEeecCcc
Q 010669          485 LSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       485 h~~~~~v~~l~~~~~g~~  502 (504)
                      |  .+.|.+++|+|+|+.
T Consensus       535 H--~~~V~~v~fspdg~~  550 (611)
T 1nr0_A          535 H--TAKVACVSWSPDNVR  550 (611)
T ss_dssp             C--SSCEEEEEECTTSSE
T ss_pred             c--ccceeEEEECCCCCE
Confidence            7  889999999999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.4e-37  Score=305.40  Aligned_cols=243  Identities=17%  Similarity=0.249  Sum_probs=205.9

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE----EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~----~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ..|...|++++|+|++.+ ++++.||+|+|||+.+++...    ...+|...|++++|+|++++|++|+.||+|++||+.
T Consensus        91 ~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~  169 (357)
T 4g56_B           91 VQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS  169 (357)
T ss_dssp             EECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             CCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            357889999999999765 467789999999998876543    334799999999999999999999999999999998


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC-CCEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-GLILG  373 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd-g~~l~  373 (504)
                      ++   .++..+.+|...|.+++|+|++. ++++++.||.|++||+++++....+.   ...+...+.+++|+|+ +.+|+
T Consensus       170 ~~---~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          170 QK---AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             TT---EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTTCCSCEEEEEECTTSTTEEE
T ss_pred             CC---cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---eccccccccchhhhhcccceEE
Confidence            86   77888899999999999999875 78999999999999999987766554   2255678999999996 57899


Q ss_pred             EEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCC-cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669          374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      +|+.|+.|++||+++++.+..+.+|...|++++|+|++ .+|++|+.|+ |+|||+++++.+..+   .|...|++++|+
T Consensus       244 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafs  320 (357)
T 4g56_B          244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWS  320 (357)
T ss_dssp             EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEEC
T ss_pred             EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEe
Confidence            99999999999999999999999999999999999987 6899999998 999999998876654   347899999999


Q ss_pred             C-CCCEEEEEeCc--EEEEEeecc
Q 010669          452 H-SGSYLAVASAD--IRVYQVASV  472 (504)
Q Consensus       452 ~-~g~~l~~~~~d--i~vw~~~~~  472 (504)
                      | ++.+|++++.|  |++|++...
T Consensus       321 P~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          321 PLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SSSTTEEEEEETTSCEEEEECC--
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCC
Confidence            8 79999999998  999999543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.7e-37  Score=299.65  Aligned_cols=262  Identities=18%  Similarity=0.330  Sum_probs=214.7

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc--eEEEcccCccceeEEEEee--CCCEEEEEeCCCcEEEEe
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~--~~~~l~s~s~dg~i~iwd  293 (504)
                      +..+|...|++++|+|+|++|++|+.|++|++||+.++.  .+..+.+|.+.|++++|++  ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456799999999999999999999999999999998764  4678899999999999986  488999999999999999


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC---
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD---  368 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd---  368 (504)
                      +.++ .......+.+|...|.+++|+|+  +.+|++|+.||.|++||++.+.......  ...+|...+.+++|+|+   
T Consensus        88 ~~~~-~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           88 EENG-TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK--INNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             CSSS-CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC--BTTSSSSCBCCCEECCCCCC
T ss_pred             CCCC-cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee--eeccccCCcceEEEccccCC
Confidence            9863 23456677899999999999998  7899999999999999998764322111  13367788999999997   


Q ss_pred             --------------CCEEEEEeCCCcEEEEEcCCC---ceeeeeeCCCCCeEEEEEcCCC----cEEEEEeCCc-EEEEE
Q 010669          369 --------------GLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGAVTAISFSENG----YYLATAAHDG-VKLWD  426 (504)
Q Consensus       369 --------------g~~l~~g~~dg~I~iwd~~~~---~~~~~~~~~~~~i~~l~~s~~g----~~l~s~~~d~-v~vwd  426 (504)
                                    +.+|++|+.|+.|++||++..   +.+..+.+|...|.+++|+|++    .+|++++.|+ |++||
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                          478999999999999999755   4677888999999999999986    8999999998 99999


Q ss_pred             cCCCc----ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCC
Q 010669          427 LRKLK----NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       427 ~~~~~----~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                      +.+..    ....+..+  ...|.+++|+|+|++|++++.|  ++||+.... ..|.++..+...
T Consensus       245 ~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~-g~~~~~~~~~~~  306 (316)
T 3bg1_A          245 CDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESVD-GQWVCISDVNKG  306 (316)
T ss_dssp             CSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECTT-SCEEEEEECC--
T ss_pred             ccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC-CcEEEeeeccCC
Confidence            97631    12233333  6789999999999999999998  999998543 468888888764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-36  Score=297.03  Aligned_cols=251  Identities=24%  Similarity=0.397  Sum_probs=213.1

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC--ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      +..+|...|.+++|+|++++|++|+.|+.+++|++..+  +.+..+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus        56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~  135 (345)
T 3fm0_A           56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD  135 (345)
T ss_dssp             ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence            34679999999999999999999999999999998766  4578889999999999999999999999999999999998


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      ......+...+.+|...|.+++|+|++++|++++.|+.|++||++++.......   ..+|...|.+++|+|+|++|++|
T Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~---~~~h~~~v~~l~~sp~g~~l~s~  212 (345)
T 3fm0_A          136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT---LEGHESTVWSLAFDPSGQRLASC  212 (345)
T ss_dssp             TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEE---ECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEE---ecCCCCceEEEEECCCCCEEEEE
Confidence            765556677888999999999999999999999999999999998876443222   22788899999999999999999


Q ss_pred             eCCCcEEEEEcCCC---------------ceeeeeeC-CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc----ee
Q 010669          376 TSEALVKIWDVKSQ---------------ANVAKFDG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN----FR  434 (504)
Q Consensus       376 ~~dg~I~iwd~~~~---------------~~~~~~~~-~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~----~~  434 (504)
                      +.||.|++||....               +++..+.+ |...|.+++|+|++..|++++.|+ |++|+......    ..
T Consensus       213 s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~  292 (345)
T 3fm0_A          213 SDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF  292 (345)
T ss_dssp             ETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred             eCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence            99999999997432               22344444 888999999999999999999998 99999876431    11


Q ss_pred             eee---cCCCCCCeeEEEECCCC-CEEEEEeCc--EEEEEeec
Q 010669          435 SFE---SSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       435 ~~~---~~~~~~~v~~i~~~~~g-~~l~~~~~d--i~vw~~~~  471 (504)
                      .+.   ...|...|++++|+|++ .+|++|+.|  |++|++..
T Consensus       293 ~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          293 SLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             EEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             EEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence            111   12347789999999998 599999998  99999943

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.9e-36  Score=323.78  Aligned_cols=273  Identities=22%  Similarity=0.351  Sum_probs=236.5

Q ss_pred             cccCCCCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCCC-----ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEE
Q 010669          218 LHKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSG-----QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV  291 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~i  291 (504)
                      ...+|...|++++|++++ ++|++|+.||+|++|++.+.     .....+.+|...|.+++|+|++++|++|+.||+|++
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            356899999999999875 79999999999999998753     346778899999999999999999999999999999


Q ss_pred             EeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC--
Q 010669          292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--  369 (504)
Q Consensus       292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg--  369 (504)
                      ||+.++   .....+.+|...|.+++|+|++++|++|+.|++|++||+..........  ...+|...|.+++|+|++  
T Consensus       457 wd~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          457 WDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE--GGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             EETTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS--STTSCSSCEEEEEECSCSSS
T ss_pred             EECCCC---cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc--CCCCCCCcEEEEEEeCCCCc
Confidence            999876   6778888999999999999999999999999999999987654433322  134688899999999987  


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669          370 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV  448 (504)
Q Consensus       370 ~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i  448 (504)
                      ..+++|+.||.|++||+++++....+.+|.+.|++++|+|+|.+|++|+.|+ |++||+++++.+..+..   ...+.++
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~  608 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSVIHAL  608 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---SSCEEEE
T ss_pred             ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCcEEEE
Confidence            6899999999999999999999999999999999999999999999999998 99999999988776654   4679999


Q ss_pred             EECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCCCC-----------------CCceeEEEEeecCcc
Q 010669          449 DFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSG-----------------TGAASFLFLFVLGQT  502 (504)
Q Consensus       449 ~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~-----------------~~~v~~l~~~~~g~~  502 (504)
                      +|+|++.+|++++.+ |+|||+    .+...+..+..+..                 ...+++++|+|+|+.
T Consensus       609 ~~sp~~~~l~~~~~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~  676 (694)
T 3dm0_A          609 CFSPNRYWLCAATEHGIKIWDL----ESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGST  676 (694)
T ss_dssp             EECSSSSEEEEEETTEEEEEET----TTTEEEEEECCCCC----------------CCCCEEEEEECTTSSE
T ss_pred             EEcCCCcEEEEEcCCCEEEEEC----CCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCE
Confidence            999999999998887 999998    56666666653310                 123789999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.3e-36  Score=299.51  Aligned_cols=250  Identities=18%  Similarity=0.208  Sum_probs=218.6

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc--eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ++..|..+|++++|+|++++|++|+.||.|++||+.+++  .+..+.+|...|++++|+|++++|++++.||.|++||+.
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            345688999999999999999999999999999999887  888999999999999999999999999999999999997


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      ++ .......+..|...|.+++|+|++++|++++.||.|++||++.+......... ...|...|.+++|+|++.+|++|
T Consensus        83 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~  160 (372)
T 1k8k_C           83 GR-TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAAG  160 (372)
T ss_dssp             TT-EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSSEEEEE
T ss_pred             CC-eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee-ecccCCCeeEEEEcCCCCEEEEE
Confidence            64 22234445679999999999999999999999999999999887632111110 22567899999999999999999


Q ss_pred             eCCCcEEEEEcC------------------CCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeee
Q 010669          376 TSEALVKIWDVK------------------SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF  436 (504)
Q Consensus       376 ~~dg~I~iwd~~------------------~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~  436 (504)
                      +.||.|++||++                  .++.+..+.+|...|.+++|+|++.+|++++.|+ |++||+++++.+..+
T Consensus       161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  240 (372)
T 1k8k_C          161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  240 (372)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence            999999999954                  6778888889999999999999999999999998 999999999988888


Q ss_pred             ecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeec
Q 010669          437 ESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVAS  471 (504)
Q Consensus       437 ~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~  471 (504)
                      ..+  ...+.+++|+|++.+|+++.+. +++|++..
T Consensus       241 ~~~--~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          241 ASE--TLPLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             ECS--SCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             ccC--CCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence            766  6789999999999999988544 99999965

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.4e-36  Score=292.10  Aligned_cols=243  Identities=19%  Similarity=0.335  Sum_probs=206.3

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|...|.+++|+|++.++++|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+...
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~  150 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE  150 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999742


Q ss_pred             CCcceeEEe---ccCCcCeEEEEEccCC----------CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEE
Q 010669          298 GNYDCKHTL---KDHTAEVQAVTVHATN----------KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA  364 (504)
Q Consensus       298 ~~~~~~~~~---~~h~~~v~~l~~~p~~----------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  364 (504)
                          .....   ..|...|.+++|+|++          .+|++++.||.|++||. .......+.     +|...|.+++
T Consensus       151 ----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-----~h~~~v~~~~  220 (343)
T 2xzm_R          151 ----CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-----AHESNVNHLS  220 (343)
T ss_dssp             ----EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-----CCSSCEEEEE
T ss_pred             ----ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-----CccccceEEE
Confidence                23332   3788999999999987          79999999999999994 455555554     6778999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCC-ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCccee--eeecC--
Q 010669          365 FHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR--SFESS--  439 (504)
Q Consensus       365 ~~pdg~~l~~g~~dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~--~~~~~--  439 (504)
                      |+|+|++|++|+.||.|++||++.. .....+. +...|.+++|+|++.+++++++++|++||+.+++...  .+...  
T Consensus       221 ~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~  299 (343)
T 2xzm_R          221 ISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPI  299 (343)
T ss_dssp             ECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSG
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcc
Confidence            9999999999999999999999544 3444443 5567999999999999887776669999998776544  33211  


Q ss_pred             -------CCCCCeeEEEECCCCCEEEEEeCc--EEEEEeec
Q 010669          440 -------DSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       440 -------~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~  471 (504)
                             .+...+.+++|+|+|++|++|+.|  |++|++..
T Consensus       300 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          300 TKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             GGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             hhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence                   235679999999999999999999  99999843

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-36  Score=301.20  Aligned_cols=270  Identities=19%  Similarity=0.295  Sum_probs=234.2

Q ss_pred             cCCCCCeEEEEeccCCC-EEEEEeCCCcEEEEcC----CCCc------eEEEccc----------CccceeEEEEeeCCC
Q 010669          220 KTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDR----PSGQ------IVTTLSG----------HSKKVTSVKFVTEGD  278 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~----~~~~------~~~~~~~----------h~~~v~~l~~s~~~~  278 (504)
                      ..|.++|++++|+|+++ +|++|+.||.|++|++    .+++      ....+..          |.+.|++++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            34568999999999999 9999999999999999    8887      4555544          688999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC------
Q 010669          279 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG------  352 (504)
Q Consensus       279 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------  352 (504)
                      +|++|+.||.|++||...    .....+..|...|.+++|+|++++|++++.||.|++||+.+++....+....      
T Consensus       122 ~l~~~~~dg~i~i~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          122 SIVTGVENGELRLWNKTG----ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             EEEEEETTSCEEEEETTS----CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             EEEEEeCCCeEEEEeCCC----CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence            999999999999999433    6777888999999999999999999999999999999999887766543211      


Q ss_pred             ---------------------------------------------CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 010669          353 ---------------------------------------------TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK  387 (504)
Q Consensus       353 ---------------------------------------------~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~  387 (504)
                                                                   ...|...|.+++|+|++.+|++++.||.|++||++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  277 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG  277 (425)
T ss_dssp             --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred             eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence                                                         12467789999999999999999999999999999


Q ss_pred             CCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--E
Q 010669          388 SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--I  464 (504)
Q Consensus       388 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i  464 (504)
                      +++.+..+.+|...|.+++|+|++ +|++++.++ |++||+++++.+..+..+  ...+.+++|+|++++|++++.|  |
T Consensus       278 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i  354 (425)
T 1r5m_A          278 NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD--GVPIFAGRISQDGQKYAVAFMDGQV  354 (425)
T ss_dssp             SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT--TCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC--CccEEEEEEcCCCCEEEEEECCCeE
Confidence            999999999999999999999999 999999998 999999999988888765  6789999999999999999988  9


Q ss_pred             EEEEeeccCccce--------------------eEEEccCCCCCC--ceeEEEEeecCcc
Q 010669          465 RVYQVASVKADWN--------------------CIKTFPDLSGTG--AASFLFLFVLGQT  502 (504)
Q Consensus       465 ~vw~~~~~~~~~~--------------------~i~~~~~h~~~~--~v~~l~~~~~g~~  502 (504)
                      ++|++    ....                    .+..+.+|  ..  .|++++|+++|+.
T Consensus       355 ~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~  408 (425)
T 1r5m_A          355 NVYDL----KKLNSKSRSLYGNRDGILNPLPIPLYASYQSS--QDNDYIFDLSWNCAGNK  408 (425)
T ss_dssp             EEEEC----HHHHC--------------CEECCEEEEECCT--TCCCCEEEEEECTTSSE
T ss_pred             EEEEC----CCCccceeeeecccccccCcccchhhhhhcCc--ccCCceEEEEccCCCce
Confidence            99999    4444                    88999988  44  9999999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-36  Score=293.22  Aligned_cols=271  Identities=18%  Similarity=0.294  Sum_probs=238.2

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++ 
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-  106 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG-  106 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-
Confidence            5679999999999999999999999999999999999999999999999999999999999999999999999999876 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCC------CCCCCC--CeEEEEE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAG------TDGRPE--GYTSAAF  365 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~------~~~~~~--~v~~~~~  365 (504)
                        .....+. |...|.+++|+|+++++++++.+     |.|.+||+..+.....+....      ...+..  .+.+++|
T Consensus       107 --~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          107 --QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             --CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             --cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence              5566665 88899999999999999999999     999999997653211111000      002223  8999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCC
Q 010669          366 HPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET  443 (504)
Q Consensus       366 ~pdg~~l~~g~~dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~  443 (504)
                      +|++++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++.+|++++.|+ |++||+++++.+..+..   ..
T Consensus       184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~  260 (369)
T 3zwl_B          184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET---DC  260 (369)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SS
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC---CC
Confidence            99999999999999999999998 788889999999999999999999999999998 99999999998888873   57


Q ss_pred             CeeEEEECCCCCEEEEEeCc----------------EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          444 PTNSVDFDHSGSYLAVASAD----------------IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       444 ~v~~i~~~~~g~~l~~~~~d----------------i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .+..++|+|++.++++++.+                +++|++    ..++.+..+.+|  .+.|++++|+|+|+.
T Consensus       261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~----~~~~~~~~~~~~--~~~v~~~~~s~~~~~  329 (369)
T 3zwl_B          261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK----IFEEEIGRVQGH--FGPLNTVAISPQGTS  329 (369)
T ss_dssp             CEEEEEECSSSSEEEEEECCC-------------CEEEEEET----TTCCEEEEEECC--SSCEEEEEECTTSSE
T ss_pred             CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec----CCCcchhheecc--cCcEEEEEECCCCCE
Confidence            89999999999999998763                678887    677888999998  889999999999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-36  Score=292.69  Aligned_cols=242  Identities=21%  Similarity=0.395  Sum_probs=198.6

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC-------CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd  293 (504)
                      .|...|.+++|+|++++|++|+.|++|++||+..       .+.+..+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            3899999999999999999999999999999842       356778899999999999999999999999999999999


Q ss_pred             CCCC-CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC--eEEEEeecCCCCCCCCCeEEEEECCC--
Q 010669          294 GSED-GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPD--  368 (504)
Q Consensus       294 ~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~pd--  368 (504)
                      +... ....++..+.+|...|.+++|+|++++|++|+.|++|++||+.++  +++..+.     +|...|.+++|+|+  
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~  210 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-----GHEGTVWSSDFDKTEG  210 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCSSS
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-----CCCCcEEEEEecCCCC
Confidence            9532 334567788899999999999999999999999999999999876  4445443     78889999999998  


Q ss_pred             CCEEEEEeCCCcEEEEEcCCC--------ceeeeeeC-CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc--ceeee
Q 010669          369 GLILGTGTSEALVKIWDVKSQ--------ANVAKFDG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK--NFRSF  436 (504)
Q Consensus       369 g~~l~~g~~dg~I~iwd~~~~--------~~~~~~~~-~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~--~~~~~  436 (504)
                      +.+|++|+.|+.|++||++.+        .....+.+ |...|.+++|++++ +|++++.|+ |++||..++.  .....
T Consensus       211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~  289 (330)
T 2hes_X          211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR  289 (330)
T ss_dssp             SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence            779999999999999999765        34445554 88999999999765 788999998 9999998764  22222


Q ss_pred             ecCCCCC-CeeEEEECC--CCCEEEEEeCc--EEEEEe
Q 010669          437 ESSDSET-PTNSVDFDH--SGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       437 ~~~~~~~-~v~~i~~~~--~g~~l~~~~~d--i~vw~~  469 (504)
                       ...|.. .|.+++|+|  ++++|++|+.|  |+||++
T Consensus       290 -~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          290 -ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             -SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred             -ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence             122344 899999999  78999999999  999997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.7e-36  Score=312.00  Aligned_cols=263  Identities=25%  Similarity=0.420  Sum_probs=237.5

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|...|.+++|+|++++|++++.||.|++||.. +..+..+.+|...|.+++|+|++++|++++.||.|++||... 
T Consensus       298 ~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-  375 (577)
T 2ymu_A          298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-  375 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-
T ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-
Confidence            345788999999999999999999999999999976 455677889999999999999999999999999999999654 


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                         .....+.+|...|.+++|+|++++|++++.|+.|++||. +++....+.     +|...|++++|+||+++|++++.
T Consensus       376 ---~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~  446 (577)
T 2ymu_A          376 ---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-----GHSSSVWGVAFSPDDQTIASASD  446 (577)
T ss_dssp             ---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE-----CCSSCEEEEEECTTSSEEEEEET
T ss_pred             ---CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec-----CCCCCeEEEEECCCCCEEEEEcC
Confidence               677788899999999999999999999999999999996 455566554     67789999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY  456 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~  456 (504)
                      |+.|++||. +++.+..+.+|...|++++|+|+|.+|++++.|+ |++||. +++.+..+..+  ...|++++|+|+|++
T Consensus       447 d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h--~~~v~~l~~s~dg~~  522 (577)
T 2ymu_A          447 DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQT  522 (577)
T ss_dssp             TSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC--SSCEEEEEECTTSSC
T ss_pred             CCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC--CCCEEEEEEcCCCCE
Confidence            999999996 6778888999999999999999999999999998 999995 67778888766  678999999999999


Q ss_pred             EEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          457 LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       457 l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      |++++.|  |+|||.     +++++..+.+|  .+.|++++|+|+|+.
T Consensus       523 l~s~~~dg~v~lwd~-----~~~~~~~~~~h--~~~v~~~~fs~dg~~  563 (577)
T 2ymu_A          523 IASASDDKTVKLWNR-----NGQLLQTLTGH--SSSVWGVAFSPDGQT  563 (577)
T ss_dssp             EEEEETTSEEEEECT-----TSCEEEEEECC--SSCEEEEEECTTSSC
T ss_pred             EEEEECcCEEEEEeC-----CCCEEEEEcCC--CCCEEEEEEcCCCCE
Confidence            9999998  999995     46789999999  889999999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.7e-35  Score=286.25  Aligned_cols=268  Identities=22%  Similarity=0.344  Sum_probs=232.5

Q ss_pred             ccCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCCCCc-----eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669          219 HKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQ-----IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW  292 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iw  292 (504)
                      ..+|.+.|++|+|+|+ +++|++|+.||+|+|||+.+.+     ....+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~  113 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW  113 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence            5689999999999997 6899999999999999987643     467889999999999999999999999999999999


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC--C
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--L  370 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg--~  370 (504)
                      +....   ........+...+..+.+++++++|++++.|+.+++||+.........    ..+|...+.+++|++++  .
T Consensus       114 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~  186 (340)
T 4aow_A          114 DLTTG---TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ----DESHSEWVSCVRFSPNSSNP  186 (340)
T ss_dssp             ETTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC----SSSCSSCEEEEEECSCSSSC
T ss_pred             eeccc---ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE----eccccCcccceEEccCCCCc
Confidence            99875   555666678888999999999999999999999999999877654433    23677899999999864  5


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEE
Q 010669          371 ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVD  449 (504)
Q Consensus       371 ~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~  449 (504)
                      ++++++.|+.|++||+++++.+..+.+|.+.|++++|+|+|.+|++|+.|+ |++||+++.+.+..+..+   ..+.++.
T Consensus       187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~  263 (340)
T 4aow_A          187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---DIINALC  263 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS---SCEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC---ceEEeee
Confidence            788999999999999999999999999999999999999999999999999 999999999988887754   5799999


Q ss_pred             ECCCCCEEEEEeCc-EEEEEeeccCccceeEEEc---------cCCCCCCceeEEEEeecCcc
Q 010669          450 FDHSGSYLAVASAD-IRVYQVASVKADWNCIKTF---------PDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       450 ~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~---------~~h~~~~~v~~l~~~~~g~~  502 (504)
                      |+|++.+++++... |++|++    .....+..+         .+|  ...|++++|+|+|+.
T Consensus       264 ~~~~~~~~~~~~d~~i~iwd~----~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~dg~~  320 (340)
T 4aow_A          264 FSPNRYWLCAATGPSIKIWDL----EGKIIVDELKQEVISTSSKAE--PPQCTSLAWSADGQT  320 (340)
T ss_dssp             ECSSSSEEEEEETTEEEEEET----TTTEEEEEECCC-------CC--CCCEEEEEECTTSSE
T ss_pred             cCCCCceeeccCCCEEEEEEC----CCCeEEEeccccceeeeccCC--CCCEEEEEECCCCCE
Confidence            99999888777666 999998    444444443         345  789999999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6e-38  Score=310.13  Aligned_cols=246  Identities=17%  Similarity=0.191  Sum_probs=208.6

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC--ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ++..+..+|++++|+|++++|++|+.||.|++||+.++  +.+..+.+|...|++++|+|++++|++++.||+|++||+.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            34556778999999999999999999999999999988  7788889999999999999999999999999999999998


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE---EEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC---LTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      ++..+.....+..|...|.+++|+|++++|++++.|+.|++||+++++.   ...+..    .|...|.+++|+|++++|
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR----PLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS----SCCSCEEEEEECTTSSEE
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec----ccCCCeEEEEEcCCCCEE
Confidence            8643446777889999999999999999999999999999999998863   444431    377899999999999999


Q ss_pred             EEEeCCCcEEEEEcC------------------CCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc-
Q 010669          373 GTGTSEALVKIWDVK------------------SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-  432 (504)
Q Consensus       373 ~~g~~dg~I~iwd~~------------------~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~-  432 (504)
                      ++|+.||.|++||++                  .++.+..+ +|...|++++|+|+|.+|++++.|+ |++||+++++. 
T Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~  240 (377)
T 3dwl_C          162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP  240 (377)
T ss_dssp             EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred             EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence            999999999999985                  34566667 8999999999999999999999998 99999999887 


Q ss_pred             ---eeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEee
Q 010669          433 ---FRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVA  470 (504)
Q Consensus       433 ---~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~  470 (504)
                         +..+..+  ...|.+++|+|+|++|++++.+ +.+|+..
T Consensus       241 ~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          241 PRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             EEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             ceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence               6666665  6789999999999999999888 7788774

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.3e-36  Score=293.95  Aligned_cols=239  Identities=20%  Similarity=0.357  Sum_probs=214.8

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC------ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd  293 (504)
                      ..|...|.+++|+|+|.+|++|+.|+.+++|++...      .....+.+|...|.+++|+|++..|++++.||+|++||
T Consensus       103 ~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd  182 (354)
T 2pbi_B          103 TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD  182 (354)
T ss_dssp             ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEe
Confidence            346778999999999999999999999999997643      34556778999999999999999999999999999999


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEcc--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI  371 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~  371 (504)
                      +.++   .++..+.+|...|.+++|+|  ++++|++|+.||.|++||+++++.+..+.     +|...|.+++|+|++.+
T Consensus       183 ~~~~---~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-----~h~~~v~~v~~~p~~~~  254 (354)
T 2pbi_B          183 VESG---QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-----THESDVNSVRYYPSGDA  254 (354)
T ss_dssp             TTTC---CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSE
T ss_pred             CCCC---eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----CCCCCeEEEEEeCCCCE
Confidence            9886   67888899999999999988  46899999999999999999999887775     67789999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeCC--CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669          372 LGTGTSEALVKIWDVKSQANVAKFDGH--VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV  448 (504)
Q Consensus       372 l~~g~~dg~I~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i  448 (504)
                      |++|+.||.|++||++.++.+..+..+  ...+++++|+|+|.+|++|+.|+ |++||+.++..+..+..|  ...|.++
T Consensus       255 l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l  332 (354)
T 2pbi_B          255 FASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTL  332 (354)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEE
Confidence            999999999999999998877766543  35789999999999999999998 999999999888877665  6899999


Q ss_pred             EECCCCCEEEEEeCc--EEEEE
Q 010669          449 DFDHSGSYLAVASAD--IRVYQ  468 (504)
Q Consensus       449 ~~~~~g~~l~~~~~d--i~vw~  468 (504)
                      +|+|+|++|++|+.|  |+||+
T Consensus       333 ~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          333 RVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EECTTSSCEEEEETTSEEEEEC
T ss_pred             EECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999  99995

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-35  Score=296.11  Aligned_cols=242  Identities=24%  Similarity=0.429  Sum_probs=213.4

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      ...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+.++   .+
T Consensus       123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~---~~  199 (393)
T 1erj_A          123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG---QC  199 (393)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EE
T ss_pred             ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC---ee
Confidence            346999999999999999999999999999999999999999999999999999999999999999999999875   45


Q ss_pred             eEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecC--CCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669          303 KHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDA--GTDGRPEGYTSAAFHPDGLILGTGTSEA  379 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~pdg~~l~~g~~dg  379 (504)
                      ...+. +...+.+++|+| ++++|++|+.||.|++||++++..+..+...  ...+|...|.+++|+|+|.+|++|+.||
T Consensus       200 ~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~  278 (393)
T 1erj_A          200 SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR  278 (393)
T ss_dssp             EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            55554 567799999999 8999999999999999999999877766321  1236788999999999999999999999


Q ss_pred             cEEEEEcCCC------------ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCee
Q 010669          380 LVKIWDVKSQ------------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN  446 (504)
Q Consensus       380 ~I~iwd~~~~------------~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~  446 (504)
                      .|++||+++.            .+...+.+|...|.+++|+|++.+|++|+.|+ |++||+++++.+..+..|  ...|.
T Consensus       279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h--~~~v~  356 (393)
T 1erj_A          279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH--RNSVI  356 (393)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEE
T ss_pred             EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC--CCCEE
Confidence            9999999753            34567788999999999999999999999998 999999999988888776  67899


Q ss_pred             EEEECC------CCCEEEEEeCc--EEEEEee
Q 010669          447 SVDFDH------SGSYLAVASAD--IRVYQVA  470 (504)
Q Consensus       447 ~i~~~~------~g~~l~~~~~d--i~vw~~~  470 (504)
                      +++|++      ++++|++|+.|  |+||++.
T Consensus       357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             EEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            999886      68899999999  9999984

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8.8e-36  Score=295.41  Aligned_cols=268  Identities=15%  Similarity=0.202  Sum_probs=225.0

Q ss_pred             cccCCCCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCCCceEEEcc--cCccceeEEEEee-CCCEEEEEeCCCcEEEEe
Q 010669          218 LHKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQIVTTLS--GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd  293 (504)
                      ...+|...|++++|+|++ ++|++|+.||.|++||+.+++....+.  +|...|.+++|+| ++++|++++.||.|++||
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  147 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD  147 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence            356789999999999999 899999999999999999888777665  6999999999999 788999999999999999


Q ss_pred             CCCCCCcceeEEec---cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669          294 GSEDGNYDCKHTLK---DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       294 ~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~  370 (504)
                      +..    .....+.   .|...|.+++|+|++++|++++.||.|++||++ ++.+..+.     .|...|.+++|+|++.
T Consensus       148 ~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~-----~h~~~v~~~~~~~~~~  217 (383)
T 3ei3_B          148 FSG----SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK-----LHKAKVTHAEFNPRCD  217 (383)
T ss_dssp             TTS----CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEE-----CSSSCEEEEEECSSCT
T ss_pred             CCC----CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEec-----cCCCcEEEEEECCCCC
Confidence            986    3334443   445889999999999999999999999999994 66666665     6778999999999998


Q ss_pred             -EEEEEeCCCcEEEEEcCC----CceeeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCC--
Q 010669          371 -ILGTGTSEALVKIWDVKS----QANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS--  441 (504)
Q Consensus       371 -~l~~g~~dg~I~iwd~~~----~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~--  441 (504)
                       +|++|+.||.|++||+++    +..+..+ +|...|++++|+| +|.+|++++.|+ |++||+++++....+..+..  
T Consensus       218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  296 (383)
T 3ei3_B          218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ  296 (383)
T ss_dssp             TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred             CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence             999999999999999998    5566666 5999999999999 999999999998 99999999887776664321  


Q ss_pred             ---C----------CCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          442 ---E----------TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       442 ---~----------~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                         .          ..+..++|+|+|++  +++.|  |+|||+    .+++.+..+.+|.+.+.+..++|+|+|+.
T Consensus       297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~----~~~~~~~~l~~~~~~~~~~~~~~s~~g~~  366 (383)
T 3ei3_B          297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDA----NSGGLVHQLRDPNAAGIISLNKFSPTGDV  366 (383)
T ss_dssp             CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEET----TTCCEEEEECBTTBCSCCCEEEECTTSSE
T ss_pred             cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEec----CCCceeeeecCCCCCceEEEEEEecCccE
Confidence               1          23334555666655  45556  999998    67888999988644778888899999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=284.59  Aligned_cols=266  Identities=16%  Similarity=0.208  Sum_probs=236.1

Q ss_pred             eccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       216 ~~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      .....+|...|++++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|++.
T Consensus        11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~   89 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF   89 (313)
T ss_dssp             EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence            3446789999999999 999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGT  374 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~  374 (504)
                      ..........+.+|...|.++.|  +++++++++.||.|++||  .+.....+.     .|...+.+++|+| ++.++++
T Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           90 ATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-----AHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             CCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-----CCSSCEEEEEEEETTTTEEEE
T ss_pred             ecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-----cCCCceeEEEEccCCCCEEEE
Confidence            76555667778899999999999  578999999999999999  566666665     5678899999998 9999999


Q ss_pred             EeCCCcEEEEEcCCCceeeeeeC-CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          375 GTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      ++.||.|++||  ..+....+.. |...|.+++|+|++. +++++.++ |++||+++++.+..+..+  ...|.+++|+|
T Consensus       161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~  235 (313)
T 3odt_A          161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH--ESFVYCIKLLP  235 (313)
T ss_dssp             EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECT
T ss_pred             EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC--CceEEEEEEec
Confidence            99999999999  4556667766 889999999999998 88899998 999999999998888765  67899999999


Q ss_pred             CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCccc
Q 010669          453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~  503 (504)
                      ++ .|++++.|  |++|++    .+++.+..+..|  .+.|++++|+++|+++
T Consensus       236 ~~-~l~~~~~dg~v~iwd~----~~~~~~~~~~~~--~~~i~~~~~~~~~~~~  281 (313)
T 3odt_A          236 NG-DIVSCGEDRTVRIWSK----ENGSLKQVITLP--AISIWSVDCMSNGDII  281 (313)
T ss_dssp             TS-CEEEEETTSEEEEECT----TTCCEEEEEECS--SSCEEEEEECTTSCEE
T ss_pred             CC-CEEEEecCCEEEEEEC----CCCceeEEEecc--CceEEEEEEccCCCEE
Confidence            99 57777777  999998    678889999888  7899999999999764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4e-36  Score=294.94  Aligned_cols=277  Identities=11%  Similarity=0.208  Sum_probs=234.9

Q ss_pred             ccccCCCCCeEEEEeccC----CCEEEEEeCCCcEEEEcCCCCceEEEccc-----CccceeEEEEeeC----CCEEEEE
Q 010669          217 PLHKTSKPGIVSLDIHYS----KDVIATGGVDTNAVLFDRPSGQIVTTLSG-----HSKKVTSVKFVTE----GDLFLTG  283 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~l~~s~~----~~~l~s~  283 (504)
                      .+..+|..+|++++|+|+    ...+++++.++.|++||+.+++.+..+..     |...|++++|+|+    +.+|++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            456789999999999984    45667777778999999998877766654     5578999999998    6799999


Q ss_pred             eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669          284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  362 (504)
                      +.||.|++||+.++   ..+..+.+|...|.+++|+| ++++|++++.||.|++||+++++....+..  ...|...|.+
T Consensus        92 ~~dg~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~v~~  166 (366)
T 3k26_A           92 GSRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VEGHRDEVLS  166 (366)
T ss_dssp             ETTCEEEEECTTTC---CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS--TTSCSSCEEE
T ss_pred             cCCCEEEEEEchhc---eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc--cccccCceeE
Confidence            99999999999875   67778889999999999999 899999999999999999999988877632  2367789999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC----------------------------CCCCeEEEEEcCCCcEE
Q 010669          363 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG----------------------------HVGAVTAISFSENGYYL  414 (504)
Q Consensus       363 ~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~----------------------------~~~~i~~l~~s~~g~~l  414 (504)
                      ++|+|++.+|++++.||.|++||+++++.+..+..                            |...|.+++|+  +.+|
T Consensus       167 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l  244 (366)
T 3k26_A          167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI  244 (366)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred             EEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence            99999999999999999999999998765544433                            88999999998  7799


Q ss_pred             EEEeCCc-EEEEEcCCCcc--------------eeeeecCCCCCCeeEEEECCC--CCEEEEEeCc--EEEEEeeccCcc
Q 010669          415 ATAAHDG-VKLWDLRKLKN--------------FRSFESSDSETPTNSVDFDHS--GSYLAVASAD--IRVYQVASVKAD  475 (504)
Q Consensus       415 ~s~~~d~-v~vwd~~~~~~--------------~~~~~~~~~~~~v~~i~~~~~--g~~l~~~~~d--i~vw~~~~~~~~  475 (504)
                      ++++.|+ |++||++++..              +..+..+  ...|.+++|+|+  +++|++++.|  |++|++......
T Consensus       245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~  322 (366)
T 3k26_A          245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH  322 (366)
T ss_dssp             EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred             EEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence            9999998 99999988654              4445444  568999999999  9999999988  999999654444


Q ss_pred             ceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          476 WNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       476 ~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ...+..+.+|.+.+.|++++|+|+|+.
T Consensus       323 ~~~~~~~~~~~~~~~v~~~~~s~~~~~  349 (366)
T 3k26_A          323 KAKCTTLTHHKCGAAIRQTSFSRDSSI  349 (366)
T ss_dssp             GCEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred             cccceEEcccccCCceEEEEeCCCCCe
Confidence            456678888766789999999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.5e-36  Score=297.39  Aligned_cols=277  Identities=16%  Similarity=0.175  Sum_probs=235.8

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc------eEEEcccCccceeEEEEeeC----C---CEEEEE
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ------IVTTLSGHSKKVTSVKFVTE----G---DLFLTG  283 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~l~~s~~----~---~~l~s~  283 (504)
                      ....+|...|++++|+|  ++|++|+.||.|++||+.+++      .+..+.+|...|++++|+|+    +   ++|+++
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence            34678999999999998  899999999999999999887      78888899999999999999    9   999999


Q ss_pred             eCCCcEEEEeCCCCCC--cceeEEeccC-----CcCeEEEEEc----cCCCE-EEEEeCCCeEEEEECCC------CeEE
Q 010669          284 SADKTVRVWQGSEDGN--YDCKHTLKDH-----TAEVQAVTVH----ATNKY-FVTASLDNTWCFYDLSS------GICL  345 (504)
Q Consensus       284 s~dg~i~iwd~~~~~~--~~~~~~~~~h-----~~~v~~l~~~----p~~~~-l~s~s~dg~i~iwd~~~------~~~~  345 (504)
                      +.||.|++||+.++..  ......+..|     ...|.+++|+    |++++ |++++.||.|++||+++      +..+
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  167 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  167 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence            9999999999987521  0016677778     5899999999    99999 99999999999999988      5444


Q ss_pred             E-----Eeec--CCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC---C---CCCeEEEEEcCCCc
Q 010669          346 T-----QVSD--AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG---H---VGAVTAISFSENGY  412 (504)
Q Consensus       346 ~-----~~~~--~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~---~---~~~i~~l~~s~~g~  412 (504)
                      .     .+..  .....|...+.+++|+|++ +|++|+.||.|++||+++++.+..+..   |   ...|.+++|+|++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~  246 (397)
T 1sq9_A          168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  246 (397)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence            3     3321  0002466789999999999 999999999999999999999999998   8   99999999999999


Q ss_pred             EEEEEeCC---c-EEEEEcCCCcceeeeecCC-----------CCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCcc
Q 010669          413 YLATAAHD---G-VKLWDLRKLKNFRSFESSD-----------SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD  475 (504)
Q Consensus       413 ~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~-----------~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~  475 (504)
                      +|++++.+   + |++||+++++.+..+....           +...|.+++|+|++++|++++.|  |++|++    ..
T Consensus       247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~----~~  322 (397)
T 1sq9_A          247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV----KT  322 (397)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET----TT
T ss_pred             EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc----CC
Confidence            99999999   8 9999999999888887611           36789999999999999999988  999998    66


Q ss_pred             ceeEEEcc------CC-------------CCCCceeEEEEeecC
Q 010669          476 WNCIKTFP------DL-------------SGTGAASFLFLFVLG  500 (504)
Q Consensus       476 ~~~i~~~~------~h-------------~~~~~v~~l~~~~~g  500 (504)
                      ++.+..+.      +|             .+.+.|++++|+++|
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             CceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            78888887      54             016789999999998

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.1e-35  Score=283.73  Aligned_cols=266  Identities=17%  Similarity=0.291  Sum_probs=223.6

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEee--CCCEEEEEeCCCcEE
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVR  290 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~--~~~~l~s~s~dg~i~  290 (504)
                      .+..+|...|++++|+|++++|++|+.||.|++||+.++    +....+.+|...|++++|+|  ++++|++|+.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            356789999999999999999999999999999999876    46777889999999999999  699999999999999


Q ss_pred             EEeCCCCCC------cceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeEEEEee--------cCCCC
Q 010669          291 VWQGSEDGN------YDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVS--------DAGTD  354 (504)
Q Consensus       291 iwd~~~~~~------~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~  354 (504)
                      +||+..+..      +.....+..|...|.+++|+|+  +++|++++.||.|++||+++++.+..+.        .....
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            999987421      2456777899999999999999  9999999999999999998875432221        11123


Q ss_pred             CCCCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCC----cEEEEEeCCc-EEE
Q 010669          355 GRPEGYTSAAFHPD---GLILGTGTSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENG----YYLATAAHDG-VKL  424 (504)
Q Consensus       355 ~~~~~v~~~~~~pd---g~~l~~g~~dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g----~~l~s~~~d~-v~v  424 (504)
                      .+...+.+++|+|+   +.++++++.++.+.+|+...++.  +..+.+|...|++++|+|++    .+|++++.|+ |++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            56778999999997   99999999999998888877765  67788899999999999998    8999999999 999


Q ss_pred             EEcCCC----------------------------------------------cceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669          425 WDLRKL----------------------------------------------KNFRSFESSDSETPTNSVDFDHSGSYLA  458 (504)
Q Consensus       425 wd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~i~~~~~g~~l~  458 (504)
                      ||++.+                                              +.+..+..  |...|++++|+|++++|+
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~  322 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVSWNLTGTILS  322 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECT--TSSCEEEEEECSSSCCEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec--ccccEEEEEEcCCCCEEE
Confidence            999864                                              33344443  367899999999999999


Q ss_pred             EEeCc--EEEEEeeccCccceeEEEccCC
Q 010669          459 VASAD--IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       459 ~~~~d--i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                      +++.|  |+||++... +.+.++..+..|
T Consensus       323 s~~~dg~v~iw~~~~~-~~~~~~~~~~~~  350 (351)
T 3f3f_A          323 SAGDDGKVRLWKATYS-NEFKCMSVITAQ  350 (351)
T ss_dssp             EEETTSCEEEEEECTT-SCEEEEEEEC--
T ss_pred             EecCCCcEEEEecCcC-cchhheeehccc
Confidence            99998  999999653 457777777665

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.5e-35  Score=282.92  Aligned_cols=265  Identities=17%  Similarity=0.278  Sum_probs=230.3

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce---EEEcc--cCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI---VTTLS--GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~---~~~~~--~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~  294 (504)
                      ..|...|++++|+|++++|++++ ||.|++||+.+++.   +..+.  +|...|.+++|+|++++|++++.||.|++||+
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  126 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            36889999999999999999999 99999999987653   22332  78999999999999999999999999999999


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      .+.. ......+..|...|.+++|+|+++++++++.||.|++||+++++....+.     .|...+.+++|+|++.+|++
T Consensus       127 ~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~  200 (337)
T 1gxr_A          127 AAPT-PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----GHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             CCC---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEE
T ss_pred             CCCC-cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-----cccCceEEEEECCCCCEEEE
Confidence            8752 23566777899999999999999999999999999999999998887775     56788999999999999999


Q ss_pred             EeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669          375 GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~  453 (504)
                      ++.||.|++||+++++.+..+. +...+.+++|+|++.+|++++.++ |++||+++.+.. .+.  .+...+.+++|+|+
T Consensus       201 ~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~  276 (337)
T 1gxr_A          201 GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYC  276 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTT
T ss_pred             EecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCC
Confidence            9999999999999998887776 778999999999999999999998 999999987653 333  34678999999999


Q ss_pred             CCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          454 GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       454 g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +++|++++.|  +++|++    ..++.+... .|  ...|+++.|+++|+.
T Consensus       277 ~~~l~~~~~dg~i~~~~~----~~~~~~~~~-~~--~~~v~~~~~s~~~~~  320 (337)
T 1gxr_A          277 GKWFVSTGKDNLLNAWRT----PYGASIFQS-KE--SSSVLSCDISVDDKY  320 (337)
T ss_dssp             SSEEEEEETTSEEEEEET----TTCCEEEEE-EC--SSCEEEEEECTTSCE
T ss_pred             CCEEEEecCCCcEEEEEC----CCCeEEEEe-cC--CCcEEEEEECCCCCE
Confidence            9999999988  999998    455555444 45  778999999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4e-35  Score=282.28  Aligned_cols=243  Identities=23%  Similarity=0.418  Sum_probs=218.5

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ....|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||+.++
T Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  139 (312)
T 4ery_A           60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG  139 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                         .....+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..    .+...+.+++|+|++++|++++.
T Consensus       140 ---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
T 4ery_A          140 ---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID----DDNPPVSFVKFSPNGKYILAATL  212 (312)
T ss_dssp             ---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC----SSCCCEEEEEECTTSSEEEEEET
T ss_pred             ---EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEec----cCCCceEEEEECCCCCEEEEEcC
Confidence               67788889999999999999999999999999999999999988776642    34567999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEE---EEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTA---ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~---l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~  453 (504)
                      ||.|++||+++++.+..+.+|...+.+   ....+++.+|++|+.|+ |++||+.+++.+..+..+  ...|.+++|+|+
T Consensus       213 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~p~  290 (312)
T 4ery_A          213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH--TDVVISTACHPT  290 (312)
T ss_dssp             TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC--SSCEEEEEECSS
T ss_pred             CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc--CCcEEEEeecCc
Confidence            999999999999999999888764332   33346789999999998 999999999988888766  678999999999


Q ss_pred             CCEEEEEe--Cc--EEEEEe
Q 010669          454 GSYLAVAS--AD--IRVYQV  469 (504)
Q Consensus       454 g~~l~~~~--~d--i~vw~~  469 (504)
                      ++++++++  .|  |++|+.
T Consensus       291 ~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          291 ENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             SSEEEEEECTTTCCEEEEEC
T ss_pred             CCceEEEEccCCccEEEecC
Confidence            99999987  35  999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-35  Score=291.26  Aligned_cols=260  Identities=20%  Similarity=0.335  Sum_probs=220.2

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCC--CCceEEEcccCccceeEEEEeeC--CCEEEEEeCCCcEEEEe
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP--SGQIVTTLSGHSKKVTSVKFVTE--GDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~s~dg~i~iwd  293 (504)
                      ...+|...|++++|+|++++|++|+.||.|++||+.  +++.+..+.+|...|++++|+++  +++|++|+.||.|++||
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   85 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   85 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence            456799999999999999999999999999999997  56778889999999999999976  89999999999999999


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC----
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP----  367 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p----  367 (504)
                      +.++ .......+..|...|.+++|+|+  +++|++++.||.|++||++++.......   ...|...|.+++|+|    
T Consensus        86 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           86 EENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCTTCEEEEEECCCC--
T ss_pred             cCCC-ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCCCceEEEEEcCcccc
Confidence            9874 22366777889999999999999  9999999999999999999874332222   125678899999999    


Q ss_pred             ---------CCCEEEEEeCCCcEEEEEcCCCc----eeeeeeCCCCCeEEEEEcCC---CcEEEEEeCCc-EEEEEcCCC
Q 010669          368 ---------DGLILGTGTSEALVKIWDVKSQA----NVAKFDGHVGAVTAISFSEN---GYYLATAAHDG-VKLWDLRKL  430 (504)
Q Consensus       368 ---------dg~~l~~g~~dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~---g~~l~s~~~d~-v~vwd~~~~  430 (504)
                               ++.+|++|+.||.|++||++++.    ....+.+|...|++++|+|+   +.+|++++.|+ |++||++++
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence                     69999999999999999998764    44677889999999999999   89999999998 999999986


Q ss_pred             cc---eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEc
Q 010669          431 KN---FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF  482 (504)
Q Consensus       431 ~~---~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~  482 (504)
                      ..   ...+....+...+.+++|+|+|++|++++.|  +++|++... ..|..+..+
T Consensus       242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~  297 (379)
T 3jrp_A          242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE-GKWEPAGEV  297 (379)
T ss_dssp             TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET-TEEEEEEEE
T ss_pred             CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC-Cccccccce
Confidence            52   2223333346789999999999999999988  999999643 345554444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.7e-35  Score=320.51  Aligned_cols=268  Identities=16%  Similarity=0.264  Sum_probs=245.5

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++++|++|+.||.|++||+.++
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~   87 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG   87 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred             eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEE
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTG  375 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g  375 (504)
                         .....+.+|.+.|.+++|+|++++|++++.||.|++||++++ .....+.     +|...+.+++|+| ++..|+++
T Consensus        88 ---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           88 ---EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-----GHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             ---CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-----CCSSCEEEEEEETTEEEEEEEE
T ss_pred             ---cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-----CCCCcEEEEEEEcCCCCEEEEE
Confidence               677788899999999999999999999999999999999987 4555554     6778899999999 89999999


Q ss_pred             eCCCcEEEEEcCCCceeeeeeCCC-CCeEEEEEcC--CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669          376 TSEALVKIWDVKSQANVAKFDGHV-GAVTAISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~s~--~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      +.||.|++||++++.....+..+. ..+.+++|+|  ++.+|++++.++ |++||+++++.+..+..+  ...|.+++|+
T Consensus       160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~  237 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFH  237 (814)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC--SSCEEEEEEC
T ss_pred             eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEc
Confidence            999999999999888877776655 8999999999  999999999998 999999999988888765  6789999999


Q ss_pred             CCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          452 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       452 ~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      |++++|++++.|  +++|++    .+++.+..+..|  ...+.+++++|+|+
T Consensus       238 ~~~~~l~~~~~dg~v~vwd~----~~~~~~~~~~~~--~~~v~~~~~~~~~~  283 (814)
T 3mkq_A          238 PTLPIIISGSEDGTLKIWNS----STYKVEKTLNVG--LERSWCIATHPTGR  283 (814)
T ss_dssp             SSSSEEEEEETTSCEEEEET----TTCSEEEEECCS--SSSEEEEEECTTCG
T ss_pred             CCCCEEEEEeCCCeEEEEEC----CCCcEEEEeecC--CCcEEEEEEccCCC
Confidence            999999999988  999998    678889999888  78999999999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-36  Score=299.02  Aligned_cols=250  Identities=18%  Similarity=0.305  Sum_probs=219.3

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC----CceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS----GQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~  295 (504)
                      .|...|.+++|+|++++|++|+.||.|++||+.+    .+.+..+.+|...|++++|+|+ +++|++++.||.|++||+.
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            4778999999999999999999999999999987    4588899999999999999998 8899999999999999998


Q ss_pred             CCC------CcceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCCCCCCeEEEEECC
Q 010669          296 EDG------NYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAG-TDGRPEGYTSAAFHP  367 (504)
Q Consensus       296 ~~~------~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p  367 (504)
                      +..      .......+..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.... ..+|...+.+++|+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (416)
T 2pm9_A          145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP  224 (416)
T ss_dssp             TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred             CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence            753      22222334679999999999998 7899999999999999999999887775321 112367899999999


Q ss_pred             CC-CEEEEEeCCC---cEEEEEcCCC-ceeeeee-CCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCcceeeeecC
Q 010669          368 DG-LILGTGTSEA---LVKIWDVKSQ-ANVAKFD-GHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESS  439 (504)
Q Consensus       368 dg-~~l~~g~~dg---~I~iwd~~~~-~~~~~~~-~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~  439 (504)
                      ++ .++++++.|+   .|++||++++ .++..+. +|...|++++|+| ++.+|++++.|+ |++||+++++.+..+..+
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~  304 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR  304 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred             CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence            87 6999999998   9999999986 6777787 8999999999999 999999999998 999999999998888776


Q ss_pred             CCCCCeeEEEECCCC-CEEEEEeCc--EEEEEeecc
Q 010669          440 DSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASV  472 (504)
Q Consensus       440 ~~~~~v~~i~~~~~g-~~l~~~~~d--i~vw~~~~~  472 (504)
                        ...|.+++|+|++ .+|++++.|  |++|++...
T Consensus       305 --~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          305 --GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             --SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             --CCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence              6789999999999 899999988  999999553

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.4e-34  Score=302.42  Aligned_cols=262  Identities=25%  Similarity=0.432  Sum_probs=236.8

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|...|.+++|+|++++|++++.|+.|++|+. +++.+..+.+|...|.+++|+|++++|++++.||+|++||...  
T Consensus       258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~--  334 (577)
T 2ymu_A          258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--  334 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--
T ss_pred             EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--
Confidence            4568899999999999999999999999999996 4678888999999999999999999999999999999999865  


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                        .....+.+|...|.+++|+|+++++++++.||.|++||. +++.+..+.     +|...|.+++|+|+|++|++++.|
T Consensus       335 --~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~~~~~d  406 (577)
T 2ymu_A          335 --QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-----GHSSSVRGVAFSPDGQTIASASDD  406 (577)
T ss_dssp             --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-----CCSSCEEEEEECTTSSCEEEEETT
T ss_pred             --CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-----CCCCCeEEEEECCCCCEEEEEeCC
Confidence              456777899999999999999999999999999999996 455666655     677889999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEE
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL  457 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l  457 (504)
                      +.|++||. +++.+..+.+|...|++++|+|++.+|++++.|+ |++||. +++.+..+..+  ...|.+++|+|++++|
T Consensus       407 ~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~--~~~v~~~~~spd~~~l  482 (577)
T 2ymu_A          407 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQTI  482 (577)
T ss_dssp             SEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECC--SSCEEEEEECTTSCEE
T ss_pred             CEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC--CCCEEEEEEcCCCCEE
Confidence            99999995 6778888999999999999999999999999998 999996 45666777665  6789999999999999


Q ss_pred             EEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          458 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       458 ~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ++++.|  |++|+.     +++++..+.+|  .+.|++++|+|+|+.
T Consensus       483 as~~~d~~i~iw~~-----~~~~~~~~~~h--~~~v~~l~~s~dg~~  522 (577)
T 2ymu_A          483 ASASDDKTVKLWNR-----NGQLLQTLTGH--SSSVRGVAFSPDGQT  522 (577)
T ss_dssp             EEEETTSEEEEEET-----TSCEEEEEECC--SSCEEEEEECTTSSC
T ss_pred             EEEeCCCEEEEEcC-----CCCEEEEEeCC--CCCEEEEEEcCCCCE
Confidence            999998  999994     57889999999  889999999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.9e-35  Score=287.93  Aligned_cols=279  Identities=13%  Similarity=0.141  Sum_probs=230.2

Q ss_pred             cccCCCCCeEEEEeccCCCE-EEEEeC---CCcEEEEcCCCCceEEEc-ccCccceeEEEEeeC---CCEEEEEeCCCcE
Q 010669          218 LHKTSKPGIVSLDIHYSKDV-IATGGV---DTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVTE---GDLFLTGSADKTV  289 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~-l~sg~~---dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~---~~~l~s~s~dg~i  289 (504)
                      +..+|...|.+++|+|++.. +++|+.   ||.|++||+.+++..... .+|...|.+++|+|+   +.+|++|+.||.|
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL   92 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence            45679999999999999965 456665   999999999988765443 378999999999998   6999999999999


Q ss_pred             EEEeCCCCCCcceeEEeccCCcCeEEEEE------ccCCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCCCCCCeEE
Q 010669          290 RVWQGSEDGNYDCKHTLKDHTAEVQAVTV------HATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       290 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~------~p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~  362 (504)
                      ++||+.++.  .....+.+|...|.++.|      +|++++|++++.||.|++||++++. ....+... ...+...+.+
T Consensus        93 ~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~  169 (357)
T 3i2n_A           93 HIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV-QGENKRDCWT  169 (357)
T ss_dssp             EEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC-TTSCCCCEEE
T ss_pred             EEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc-CCCCCCceEE
Confidence            999998763  267778899999999954      6789999999999999999999886 55555421 1122447888


Q ss_pred             EE----ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcC---CCcEEEEEeCCc-EEEEEcCCCccee
Q 010669          363 AA----FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE---NGYYLATAAHDG-VKLWDLRKLKNFR  434 (504)
Q Consensus       363 ~~----~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~---~g~~l~s~~~d~-v~vwd~~~~~~~~  434 (504)
                      ++    |+|++.+|++|+.||.|++||+++++.... ..|...|.+++|+|   ++.+|++++.++ |++||+++++...
T Consensus       170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  248 (357)
T 3i2n_A          170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK  248 (357)
T ss_dssp             EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT
T ss_pred             EEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc
Confidence            88    788999999999999999999999887544 55888999999999   999999999998 9999999887766


Q ss_pred             eeec---CCCCCCeeEEEECCCCC-EEEEEeCc--EEEEEeeccCc---------------cceeEEEccCCCCCCceeE
Q 010669          435 SFES---SDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKA---------------DWNCIKTFPDLSGTGAASF  493 (504)
Q Consensus       435 ~~~~---~~~~~~v~~i~~~~~g~-~l~~~~~d--i~vw~~~~~~~---------------~~~~i~~~~~h~~~~~v~~  493 (504)
                      .+..   ..+...|.+++|+|++. +|++++.|  |++|++.....               ++..+..+.+|  .+.|++
T Consensus       249 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~  326 (357)
T 3i2n_A          249 GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS--TQPISS  326 (357)
T ss_dssp             EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC--SSCEEE
T ss_pred             ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC--CCCeeE
Confidence            5541   13378999999999998 89999988  99999965322               23678889998  889999


Q ss_pred             EEEeecCcc
Q 010669          494 LFLFVLGQT  502 (504)
Q Consensus       494 l~~~~~g~~  502 (504)
                      ++|+|+|+.
T Consensus       327 ~~~s~~~~~  335 (357)
T 3i2n_A          327 LDWSPDKRG  335 (357)
T ss_dssp             EEECSSSTT
T ss_pred             EEEcCCCCe
Confidence            999999974

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.9e-35  Score=297.52  Aligned_cols=248  Identities=20%  Similarity=0.373  Sum_probs=203.7

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc-----------eEEEcccCc------------cceeEEEEeeCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-----------IVTTLSGHS------------KKVTSVKFVTEG  277 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-----------~~~~~~~h~------------~~v~~l~~s~~~  277 (504)
                      .+.+.|++++|+|+|++|++|+.||.|+|||+.+++           ....+.+|.            ..|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            356789999999999999999999999999998776           578888998            889999999988


Q ss_pred             --CEEEEEeCCCcEEEEeCCCCCCc------------------------------------ceeEE-eccCCcCeEEEEE
Q 010669          278 --DLFLTGSADKTVRVWQGSEDGNY------------------------------------DCKHT-LKDHTAEVQAVTV  318 (504)
Q Consensus       278 --~~l~s~s~dg~i~iwd~~~~~~~------------------------------------~~~~~-~~~h~~~v~~l~~  318 (504)
                        .+|++++.||+|++||+......                                    .+... ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              78999999999999998652110                                    00112 3579999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCC-CeEEEEee--cCCCCCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCce---
Q 010669          319 HATNKYFVTASLDNTWCFYDLSS-GICLTQVS--DAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQAN---  391 (504)
Q Consensus       319 ~p~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~--~~~~~~~~~~v~~~~~~pdg-~~l~~g~~dg~I~iwd~~~~~~---  391 (504)
                      +|++++|++| .||.|++||+++ +.....+.  .....+|...|.+++|+|++ .+|++|+.||.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999998 799999999994 33433321  11123677889999999998 9999999999999999999886   


Q ss_pred             -eeeeeCCCC------------CeEEEEEcCCCcEEEEEeCCc-EEEEEcCC-CcceeeeecCCCCC-------------
Q 010669          392 -VAKFDGHVG------------AVTAISFSENGYYLATAAHDG-VKLWDLRK-LKNFRSFESSDSET-------------  443 (504)
Q Consensus       392 -~~~~~~~~~------------~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~-~~~~~~~~~~~~~~-------------  443 (504)
                       +..+.+|..            .|.+++|+|+|.+|++++. + |++||+++ ++.+..+..+....             
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  343 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF  343 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence             778888775            8999999999999999999 7 99999997 78888777653111             


Q ss_pred             CeeEEEECCCCCEEEEEeCc--EEEEEee
Q 010669          444 PTNSVDFDHSGSYLAVASAD--IRVYQVA  470 (504)
Q Consensus       444 ~v~~i~~~~~g~~l~~~~~d--i~vw~~~  470 (504)
                      .+..++|+|++++|++|+.|  |++||+.
T Consensus       344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          344 DKFECCWNGSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             CCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred             cceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence            13349999999999999998  9999983

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.4e-34  Score=286.51  Aligned_cols=268  Identities=16%  Similarity=0.277  Sum_probs=225.8

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      .+....|++++++|++|+.||.|++||+.+++....+.+|.+.|++++|+|++++|++|+.||+|++||+.++   ....
T Consensus        99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~  175 (420)
T 3vl1_A           99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG---SNPR  175 (420)
T ss_dssp             EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CCCE
T ss_pred             ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC---cCce
Confidence            3445578999999999999999999999999999999999999999999999999999999999999999876   5667


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCC---------------------CCeEEE
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP---------------------EGYTSA  363 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------------------~~v~~~  363 (504)
                      .+.+|...|.+++|+|++++|++++.||.|++||+++++....+....  .+.                     ..+.++
T Consensus       176 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~  253 (420)
T 3vl1_A          176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE--NPHDGVNSIALFVGTDRQLHEISTSKKNNL  253 (420)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT--BTTCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred             EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC--CCCCCccEEEEecCCcceeeecccCcccce
Confidence            788999999999999999999999999999999999999888775321  222                     344555


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCceeeeee-CCCCCeEEEEEcCCCc-EEEEEeCCc-EEEEEcCCCcc-eeeeecC
Q 010669          364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSENGY-YLATAAHDG-VKLWDLRKLKN-FRSFESS  439 (504)
Q Consensus       364 ~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~g~-~l~s~~~d~-v~vwd~~~~~~-~~~~~~~  439 (504)
                      +|+|++++|++|+.||.|++||+++++.+..+. .|...|++++|+|++. +|++|+.|+ |++||+++++. +..+..+
T Consensus       254 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  333 (420)
T 3vl1_A          254 EFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN  333 (420)
T ss_dssp             CSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES
T ss_pred             EEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc
Confidence            668999999999999999999999998777765 4788999999999998 999999998 99999998754 6666653


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCcc-----ceeEEEccCCCCCCceeEEEEeecCc
Q 010669          440 DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD-----WNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       440 ~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~-----~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                       +...+.++.| +++.+|++++.|  +++|++......     ......+.+|  .+.|.+++|+|+|+
T Consensus       334 -~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          334 -EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN--DDAVSQFCYVSDDE  398 (420)
T ss_dssp             -TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCS--SCCCCEEEEECCSS
T ss_pred             -CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccC--CcceEEEEEccCCC
Confidence             2567888855 578899999988  999999553221     1222234456  78999999999998

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-35  Score=294.62  Aligned_cols=244  Identities=22%  Similarity=0.425  Sum_probs=211.0

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC-------ceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEE
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVR  290 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~  290 (504)
                      ...|...|.+++|+|+|++|++|+.|+.+++|++.+.       .....+.+|.+.|.++.|+|+ +..|++|+.|++|+
T Consensus       104 ~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~  183 (380)
T 3iz6_a          104 IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCV  183 (380)
T ss_dssp             EECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEE
T ss_pred             EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEE
Confidence            4568889999999999999999999999999998643       234567899999999999996 45799999999999


Q ss_pred             EEeCCCCCCcceeEEe-----ccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCCCCCCeEEE
Q 010669          291 VWQGSEDGNYDCKHTL-----KDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSS-GICLTQVSDAGTDGRPEGYTSA  363 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~-----~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~  363 (504)
                      +||+.++   ..+..+     .+|...|.++.|++ ++++|++|+.||+|++||++. +..+..+.     +|...|.++
T Consensus       184 ~wd~~~~---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-----~h~~~v~~v  255 (380)
T 3iz6_a          184 LWDVTTG---QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-----GHEGDINSV  255 (380)
T ss_dssp             EECTTTC---CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-----CCSSCCCEE
T ss_pred             EEEcCCC---cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-----CcCCCeEEE
Confidence            9999886   445444     57999999999987 789999999999999999984 45555554     788899999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC-------CCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceee
Q 010669          364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-------GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS  435 (504)
Q Consensus       364 ~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-------~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~  435 (504)
                      +|+|++.+|++|+.||.|++||+++++.+..+..+.       ..|++++|+|+|.+|++|+.|+ |++||+.+++.+..
T Consensus       256 ~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~  335 (380)
T 3iz6_a          256 KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN  335 (380)
T ss_dssp             EECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEE
T ss_pred             EEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEE
Confidence            999999999999999999999999998888776432       2489999999999999999998 99999998887766


Q ss_pred             eec--CCCCCCeeEEEECCCCCEEEEEeCc--EEEEEee
Q 010669          436 FES--SDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA  470 (504)
Q Consensus       436 ~~~--~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~  470 (504)
                      +..  ..|...|.+++|+|+|.+|++|+.|  |+||++.
T Consensus       336 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          336 LGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             ECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             EecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence            632  2347889999999999999999999  9999983

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.1e-34  Score=282.26  Aligned_cols=266  Identities=13%  Similarity=0.140  Sum_probs=227.6

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc---eEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEE
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ---IVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVW  292 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iw  292 (504)
                      .+..+|.+.|++++|+|++++|++|+.||.|++|++.++.   ....+.+|...|++++|+|+++ +|++|+.||.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3456899999999999999999999999999999998776   3455568999999999999999 99999999999999


Q ss_pred             eC-CCCCCcceeEEecc--CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC---------CeEEEEeecCCCCCCCCCe
Q 010669          293 QG-SEDGNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS---------GICLTQVSDAGTDGRPEGY  360 (504)
Q Consensus       293 d~-~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~v  360 (504)
                      |+ ..+    ....+.+  |...|.+++|+| +++|++++.||.|++||+++         ++.+..+      .+...+
T Consensus        85 d~~~~~----~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~v  153 (342)
T 1yfq_A           85 DLIGSP----SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT------KVKNKI  153 (342)
T ss_dssp             CSSSSS----SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS------SSCCCE
T ss_pred             EeccCC----ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE------eeCCce
Confidence            99 764    3366778  999999999999 99999999999999999986         4433322      356789


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCC-Cce--eeeeeCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCC-----
Q 010669          361 TSAAFHPDGLILGTGTSEALVKIWDVKS-QAN--VAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKL-----  430 (504)
Q Consensus       361 ~~~~~~pdg~~l~~g~~dg~I~iwd~~~-~~~--~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~-----  430 (504)
                      .+++|+|++  +++++.||.|++||+++ +..  ......|...|.+++|+| ++.+|++++.++ |++||++..     
T Consensus       154 ~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          154 FTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             EEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             EEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence            999999987  99999999999999988 543  334456888999999999 999999999998 999999887     


Q ss_pred             -cceeeeecCCC-------CCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          431 -KNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       431 -~~~~~~~~~~~-------~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                       +....+..+..       ...|.+++|+|++++|++++.|  |++||+    .+++.+..+.+| +.+.|++++  ++|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~----~~~~~~~~~~~~-h~~~v~~~~--~~~  304 (342)
T 1yfq_A          232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL----QTRKKIKNFAKF-NEDSVVKIA--CSD  304 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET----TTTEEEEECCCC-SSSEEEEEE--ECS
T ss_pred             cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC----ccHhHhhhhhcc-cCCCceEec--CCC
Confidence             66777766532       3489999999999999999988  999998    678889999886 367899998  887


Q ss_pred             cc
Q 010669          501 QT  502 (504)
Q Consensus       501 ~~  502 (504)
                      +.
T Consensus       305 ~~  306 (342)
T 1yfq_A          305 NI  306 (342)
T ss_dssp             SE
T ss_pred             Ce
Confidence            64

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.9e-35  Score=298.43  Aligned_cols=272  Identities=17%  Similarity=0.168  Sum_probs=215.0

Q ss_pred             cCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCCCce--EEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCC
Q 010669          220 KTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       220 ~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ..|...|+||+|+| ++++||+|+.||.|+|||+.+++.  ...+.+|.+.|++|+|+| ++++|++|+.||+|++||+.
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence            45778899999999 567999999999999999987654  445678999999999998 68899999999999999997


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC-EEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-ILGT  374 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~-~l~~  374 (504)
                      +. ..........+...+.+++|+|++++|++|+.||.|++||++.. .+..+     .+|...|.+++|+|++. +|++
T Consensus       196 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~-----~~h~~~v~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          196 GN-ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL-----RMHKKKVTHVALNPCCDWFLAT  268 (435)
T ss_dssp             SC-EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS-----BCCSSCEEEEEECTTCSSEEEE
T ss_pred             CC-ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE-----ecccceEEeeeecCCCceEEEE
Confidence            63 11112222234456789999999999999999999999999754 33333     37888999999999875 7889


Q ss_pred             EeCCCcEEEEEcCCCceeee---eeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCC----CCee
Q 010669          375 GTSEALVKIWDVKSQANVAK---FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE----TPTN  446 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~----~~v~  446 (504)
                      |+.||.|++||+++.+....   ..+|...|++++|+|+|.+|++++.|+ |++||++++.....+..+.+.    ..+.
T Consensus       269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  348 (435)
T 4e54_B          269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPI  348 (435)
T ss_dssp             EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCC
T ss_pred             ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeE
Confidence            99999999999988765433   357899999999999999999999998 999999998877766544321    1234


Q ss_pred             EEEECCCCCEEEEEeC-----------c---EEEEEeeccCccceeEEEccCCCCCCceeEE-EEeecCccc
Q 010669          447 SVDFDHSGSYLAVASA-----------D---IRVYQVASVKADWNCIKTFPDLSGTGAASFL-FLFVLGQTC  503 (504)
Q Consensus       447 ~i~~~~~g~~l~~~~~-----------d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l-~~~~~g~~~  503 (504)
                      ...|+|++.++++++.           +   |++|+.    .+++.+..+.++ +...|.++ +|+|+|++.
T Consensus       349 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~----~~g~~~~~l~~~-~~~~v~s~~~fspdg~~l  415 (435)
T 4e54_B          349 KAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDG----NSGKMMCQLYDP-ESSGISSLNEFNPMGDTL  415 (435)
T ss_dssp             BCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECS----SSCCEEEEECCS-SCCCCCCEEEECTTSSCE
T ss_pred             EEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEEC----CCCcEEEEEeCC-CCCcEEEEEEECCCCCEE
Confidence            5677777777776642           2   899998    667778776543 26778887 689998753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.3e-35  Score=310.76  Aligned_cols=245  Identities=23%  Similarity=0.391  Sum_probs=214.8

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|...|.+++|+|++++|++|+.||.|++||+.++..+..+.+|...|.+++|+|++++|++|+.|++|++||.....
T Consensus       426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~  505 (694)
T 3dm0_A          426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC  505 (694)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999986531


Q ss_pred             CcceeEEeccCCcCeEEEEEccCC--CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATN--KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                      .........+|...|.+++|+|++  ..+++++.|++|++||+++++....+.     +|...|++++|+|+|++|++|+
T Consensus       506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-----~h~~~v~~v~~spdg~~l~sg~  580 (694)
T 3dm0_A          506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-----GHTGYVSTVAVSPDGSLCASGG  580 (694)
T ss_dssp             EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEE
T ss_pred             ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-----CCCCCEEEEEEeCCCCEEEEEe
Confidence            111111224788999999999986  589999999999999999998887765     6788999999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCC---------------
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDS---------------  441 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~---------------  441 (504)
                      .||.|++||+++++.+..+.. ...|.+++|+|++.+|+++++++|++||++++..+..+..+..               
T Consensus       581 ~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (694)
T 3dm0_A          581 KDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK  659 (694)
T ss_dssp             TTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC---------------
T ss_pred             CCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCC
Confidence            999999999999998888764 4689999999999999998877799999999887776643210               


Q ss_pred             --CCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          442 --ETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       442 --~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                        ...+++++|+|+|++|++|+.|  |+||++
T Consensus       660 ~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          660 RKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             -CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             ceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence              1237889999999999999999  999998

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-35  Score=296.80  Aligned_cols=258  Identities=16%  Similarity=0.242  Sum_probs=211.1

Q ss_pred             cccCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCC---Cc---eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEE
Q 010669          218 LHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPS---GQ---IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR  290 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~---~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~  290 (504)
                      +..+|.+.|++++|+| ++++|++|+.||.|++||+.+   +.   ....+ +|...|++++|+|++++|++|+.||+|+
T Consensus        58 ~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~  136 (437)
T 3gre_A           58 LMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQII  136 (437)
T ss_dssp             ECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence            4477899999999999 999999999999999999865   33   22233 4899999999999999999999999999


Q ss_pred             EEeCCCCCCcceeEEec----------c--CCcCeEEEE--EccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCC
Q 010669          291 VWQGSEDGNYDCKHTLK----------D--HTAEVQAVT--VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR  356 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~----------~--h~~~v~~l~--~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  356 (504)
                      +||+...........+.          .  +...+.++.  +++++++|++++.||.|++||+++++.+..+...   .|
T Consensus       137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~h  213 (437)
T 3gre_A          137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS---PR  213 (437)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC---GG
T ss_pred             EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC---CC
Confidence            99985210002222221          1  456677776  5578999999999999999999999998888621   26


Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee-CCCCCeEEEEEcC----CCcEEEEEeCCc-EEEEEcCCC
Q 010669          357 PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSE----NGYYLATAAHDG-VKLWDLRKL  430 (504)
Q Consensus       357 ~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~----~g~~l~s~~~d~-v~vwd~~~~  430 (504)
                      ...|++++|+|++.+|++|+.||.|++||+++++++..+. .|...|++++|+|    ++.+|++|+.|+ |++||++++
T Consensus       214 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  293 (437)
T 3gre_A          214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG  293 (437)
T ss_dssp             GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence            7799999999999999999999999999999999988886 7888999996654    688999999999 999999999


Q ss_pred             cceeeeecCC------------------------CCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccC
Q 010669          431 KNFRSFESSD------------------------SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       431 ~~~~~~~~~~------------------------~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      +.+..+..+.                        +...|.+++|+ ++.+|++|+.|  |++|++    .+++.+..+.+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~----~~~~~~~~~~~  368 (437)
T 3gre_A          294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL----NELSSSKAVIS  368 (437)
T ss_dssp             EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET----TCGGGCEEEEC
T ss_pred             cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC----CCcccceEEec
Confidence            8877776432                        34568899999 78999999988  999998    45555555554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6e-35  Score=286.52  Aligned_cols=243  Identities=16%  Similarity=0.295  Sum_probs=213.1

Q ss_pred             CCCCeEEEEeccC----CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCC
Q 010669          222 SKPGIVSLDIHYS----KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       222 ~~~~I~~~~~s~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      |...|++++|+|+    +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||.|++||+.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            6788999999999    67999999999999999999999999999999999999999 899999999999999999987


Q ss_pred             CCCcceeEEe---ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeec-----------------------
Q 010669          297 DGNYDCKHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD-----------------------  350 (504)
Q Consensus       297 ~~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----------------------  350 (504)
                      +   .....+   .+|...|.+++|+|++++|++++.||.|++||+++++....+..                       
T Consensus       148 ~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (366)
T 3k26_A          148 D---TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF  224 (366)
T ss_dssp             T---EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred             C---eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence            6   555665   68999999999999999999999999999999997654322210                       


Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce--------------eeeeeCCCCCeEEEEEcCC--CcEE
Q 010669          351 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--------------VAKFDGHVGAVTAISFSEN--GYYL  414 (504)
Q Consensus       351 ~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~--------------~~~~~~~~~~i~~l~~s~~--g~~l  414 (504)
                      .....|...|.+++|+  +.++++++.||.|++||++++..              +..+..|...|++++|+|+  |.+|
T Consensus       225 ~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l  302 (366)
T 3k26_A          225 STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML  302 (366)
T ss_dssp             EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred             ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence            0012377889999999  77999999999999999987754              7778889999999999999  9999


Q ss_pred             EEEeCCc-EEEEEcCCCccee----eeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          415 ATAAHDG-VKLWDLRKLKNFR----SFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       415 ~s~~~d~-v~vwd~~~~~~~~----~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      ++++.|+ |++||+.+++...    .+..+.+...|.+++|+|++++|++++.|  |++||+
T Consensus       303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             EEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            9999998 9999999886543    55555446899999999999999999998  999997

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.2e-33  Score=270.96  Aligned_cols=236  Identities=18%  Similarity=0.287  Sum_probs=214.6

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc--eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      .|...|.+++|+|++++|++++.||.|++||+.+++  ....+..|...|.+++|+|++++|++++.||.|++||+.++ 
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-  173 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-  173 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-
Confidence            678899999999999999999999999999999877  66778889999999999999999999999999999999875 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                        .....+..|...|.+++|+|++++|++++.||.|++||+++++....+.      +...+.+++|+|++.++++++.+
T Consensus       174 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~~  245 (337)
T 1gxr_A          174 --TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD------FTSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             --EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEEEEECTTSSEEEEEETT
T ss_pred             --ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec------CCCceEEEEECCCCCEEEEEcCC
Confidence              6777888899999999999999999999999999999999998887764      34679999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEE
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL  457 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l  457 (504)
                      |.|++||+++++.. .+..|...|.+++|+|++.+|++++.|+ |++||+.+++.+.....   ...+.+++|+|++++|
T Consensus       246 ~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l  321 (337)
T 1gxr_A          246 SNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISVDDKYI  321 (337)
T ss_dssp             SCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEE
T ss_pred             CcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecC---CCcEEEEEECCCCCEE
Confidence            99999999887654 5677999999999999999999999998 99999999887754432   5789999999999999


Q ss_pred             EEEeCc--EEEEEe
Q 010669          458 AVASAD--IRVYQV  469 (504)
Q Consensus       458 ~~~~~d--i~vw~~  469 (504)
                      ++++.|  +++|++
T Consensus       322 ~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          322 VTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSCEEEEEE
T ss_pred             EEecCCCeEEEEEE
Confidence            999988  999997

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-33  Score=282.60  Aligned_cols=249  Identities=17%  Similarity=0.253  Sum_probs=214.9

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      ..|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|  ++++|++|+.||.|++||+.... 
T Consensus       131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-  207 (401)
T 4aez_A          131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN-  207 (401)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-
T ss_pred             cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc-
Confidence            347889999999999999999999999999999999999999999999999999  56799999999999999998543 


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC-CEEEEEe--
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGT--  376 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg-~~l~~g~--  376 (504)
                       .....+.+|.+.|.+++|+|++++|++|+.||.|++||++++.....+.     .|...|.+++|+|++ .++++|+  
T Consensus       208 -~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~ll~~~~gs  281 (401)
T 4aez_A          208 -HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-----NHNAAVKAVAWCPWQSNLLATGGGT  281 (401)
T ss_dssp             -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-----CCSSCCCEEEECTTSTTEEEEECCT
T ss_pred             -ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-----CCcceEEEEEECCCCCCEEEEecCC
Confidence             5677788999999999999999999999999999999999998887765     567889999999966 5666655  


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEe--CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA--HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~--~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~  453 (504)
                      .||.|++||+++++.+..+. +...|.+++|+|++.+|++++  .++ |++||+.++..........+...|.+++|+|+
T Consensus       282 ~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d  360 (401)
T 4aez_A          282 MDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD  360 (401)
T ss_dssp             TTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTT
T ss_pred             CCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCC
Confidence            79999999999999988887 667899999999999999954  677 99999998766665544445789999999999


Q ss_pred             CCEEEEEeCc--EEEEEeeccCccceeEEEc
Q 010669          454 GSYLAVASAD--IRVYQVASVKADWNCIKTF  482 (504)
Q Consensus       454 g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~  482 (504)
                      |.+|++++.|  |++|++    ..++.+...
T Consensus       361 g~~l~s~~~dg~i~iw~~----~~~~~~~~~  387 (401)
T 4aez_A          361 GRILSTAASDENLKFWRV----YDGDHVKRP  387 (401)
T ss_dssp             SSEEEEECTTSEEEEEEC----CC-------
T ss_pred             CCEEEEEeCCCcEEEEEC----CCCcccccc
Confidence            9999999998  999999    444444433

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.5e-34  Score=285.22  Aligned_cols=271  Identities=20%  Similarity=0.281  Sum_probs=222.1

Q ss_pred             eEEEEeccCCCE-EEEEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCC
Q 010669          226 IVSLDIHYSKDV-IATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       226 I~~~~~s~~~~~-l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      ...++++|+... +++++.||.|+||++...    ..+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.+++.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            346788887654 445789999999998654    23456779999999999999 899999999999999999987532


Q ss_pred             c----ceeEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          300 Y----DCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       300 ~----~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      .    .....+.+|...|.+++|+|++ ++|++++.||.|++||+++++....+.   ...|...|.+++|+|++.+|++
T Consensus       117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~  193 (402)
T 2aq5_A          117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG---PDVHPDTIYSVDWSRDGALICT  193 (402)
T ss_dssp             SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC---TTTCCSCEEEEEECTTSSCEEE
T ss_pred             ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe---cCCCCCceEEEEECCCCCEEEE
Confidence            1    3567788999999999999998 699999999999999999999887773   1267789999999999999999


Q ss_pred             EeCCCcEEEEEcCCCceeeee-eCCCCC-eEEEEEcCCCcEEEEE---eCCc-EEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669          375 GTSEALVKIWDVKSQANVAKF-DGHVGA-VTAISFSENGYYLATA---AHDG-VKLWDLRKLKNFRSFESSDSETPTNSV  448 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~~~~~-~~~~~~-i~~l~~s~~g~~l~s~---~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i  448 (504)
                      ++.||.|++||+++++.+..+ .+|.+. +.++.|+|+|.+|++|   +.++ |++||++++..........+...+.++
T Consensus       194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  273 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP  273 (402)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred             EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence            999999999999999999888 678775 8999999999999999   6777 999999987653333222335789999


Q ss_pred             EECCCCCEEEEEe-Cc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          449 DFDHSGSYLAVAS-AD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       449 ~~~~~g~~l~~~~-~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +|+|++++|++++ .|  |++|++.....   .+..+..|.+.+.|.+++|+|+|+.
T Consensus       274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~~---~~~~l~~~~~~~~v~~~~~sp~~~~  327 (402)
T 2aq5_A          274 FFDPDTNIVYLCGKGDSSIRYFEITSEAP---FLHYLSMFSSKESQRGMGYMPKRGL  327 (402)
T ss_dssp             EEETTTTEEEEEETTCSCEEEEEECSSTT---CEEEEEEECCSSCCSEEEECCGGGS
T ss_pred             EEcCCCCEEEEEEcCCCeEEEEEecCCCc---ceEeecccccCCcccceEEeccccc
Confidence            9999999997654 45  99999944221   1344444433789999999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.9e-35  Score=294.18  Aligned_cols=262  Identities=12%  Similarity=0.191  Sum_probs=220.2

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      .+++++|+|++++|++|+.||.|++||+.+++....+..| ..+....|++++++|++|+.||.|++||+.++   ....
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~  133 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---LQRE  133 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC---EEEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc---ceee
Confidence            4557899999999999999999999999887766666666 44555578899999999999999999999875   6667


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW  384 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iw  384 (504)
                      .+.+|.+.|.+++|+|++++|++++.||.|++||+++++.+..+.     +|...|.+++|+|++.+|++|+.||.|++|
T Consensus       134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw  208 (420)
T 3vl1_A          134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-----GHRATVTDIAIIDRGRNVLSASLDGTIRLW  208 (420)
T ss_dssp             ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-----CCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence            778999999999999999999999999999999999998887775     678899999999999999999999999999


Q ss_pred             EcCCCceeeeeeC---CCCCeEE---------------------EEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC
Q 010669          385 DVKSQANVAKFDG---HVGAVTA---------------------ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS  439 (504)
Q Consensus       385 d~~~~~~~~~~~~---~~~~i~~---------------------l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~  439 (504)
                      |+++++.+..+..   |...|.+                     ++|+|+|.+|++++.|+ |++||+++++....+.. 
T Consensus       209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  287 (420)
T 3vl1_A          209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-  287 (420)
T ss_dssp             ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC-
T ss_pred             ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc-
Confidence            9999998888864   3334444                     45578999999999998 99999999887776654 


Q ss_pred             CCCCCeeEEEECCCCC-EEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          440 DSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       440 ~~~~~v~~i~~~~~g~-~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      .+...+.+++|+|++. +|++|+.|  |++||+...   ...+..+.+| +...|+++. +++|+
T Consensus       288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~-~~~~v~~~~-~~~~~  347 (420)
T 3vl1_A          288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP---ECPVGEFLIN-EGTPINNVY-FAAGA  347 (420)
T ss_dssp             TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT---TSCSEEEEES-TTSCEEEEE-EETTE
T ss_pred             ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC---cCchhhhhcc-CCCCceEEE-eCCCC
Confidence            2367899999999999 99999998  999998332   2346667664 266788884 45554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-33  Score=280.89  Aligned_cols=258  Identities=18%  Similarity=0.278  Sum_probs=221.5

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc-CccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      +.+++|++  ..+++++.||.|++||+.+++....+.. |...|++++|+|++++|++|+.||.|++||+.++   ....
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~  170 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---TKLR  170 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEE
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC---eEEE
Confidence            55666664  5577888999999999999988877765 8899999999999999999999999999999876   6778


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI  383 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~i  383 (504)
                      .+.+|...|.+++|  ++++|++++.||.|++||++. +.....+.     +|...|.+++|+|++.+|++|+.||.|++
T Consensus       171 ~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~v~i  243 (401)
T 4aez_A          171 TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNVVQI  243 (401)
T ss_dssp             EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Confidence            88899999999999  468999999999999999994 55555554     67789999999999999999999999999


Q ss_pred             EEcCCCceeeeeeCCCCCeEEEEEcCCC-cEEEEEe--CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEE
Q 010669          384 WDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAA--HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV  459 (504)
Q Consensus       384 wd~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~s~~--~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~  459 (504)
                      ||+++++.+..+..|...|.+++|+|++ .++++++  .|+ |++||+++++.+..+..   ...+.+++|+|++.++++
T Consensus       244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA---GSQVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEECSSSSEEEE
T ss_pred             ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEEECCCCCeEEE
Confidence            9999999999999999999999999976 5666655  577 99999999998888864   468999999999999999


Q ss_pred             Ee--Cc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          460 AS--AD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       460 ~~--~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ++  .|  +++|++..  ........+.+|  .+.|++++|+|+|+.
T Consensus       321 ~~g~~dg~i~v~~~~~--~~~~~~~~~~~h--~~~v~~~~~s~dg~~  363 (401)
T 4aez_A          321 THGFPDNNLSIWSYSS--SGLTKQVDIPAH--DTRVLYSALSPDGRI  363 (401)
T ss_dssp             EECTTTCEEEEEEEET--TEEEEEEEEECC--SSCCCEEEECTTSSE
T ss_pred             EeecCCCcEEEEecCC--ccceeEEEecCC--CCCEEEEEECCCCCE
Confidence            54  55  99999943  224455567788  889999999999964

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=289.43  Aligned_cols=266  Identities=13%  Similarity=0.254  Sum_probs=228.4

Q ss_pred             CCeEEEEeccCCC-EEEEE----------eCCCcEEEEcCCCCc---eEEEcccCccceeEEEEeeCCCEEEEEeCCCcE
Q 010669          224 PGIVSLDIHYSKD-VIATG----------GVDTNAVLFDRPSGQ---IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTV  289 (504)
Q Consensus       224 ~~I~~~~~s~~~~-~l~sg----------~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i  289 (504)
                      ..|.+++|+|+++ +|++|          +.||.|++||+.++.   .+..+ .|...|++++|+|++.+|++|+.||.|
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v   91 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL   91 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence            3578999999987 99999          889999999998875   33333 588999999999999999999999999


Q ss_pred             EEEeCCCCCC-cceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCe------EEEEeecCCCCCCCCCeE
Q 010669          290 RVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGI------CLTQVSDAGTDGRPEGYT  361 (504)
Q Consensus       290 ~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~v~  361 (504)
                      ++||+..... ......+.+|...|.+++|+|+ +++|++++.||.|++||+.++.      ....+.  ....|...+.
T Consensus        92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~  169 (416)
T 2pm9_A           92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG--QSMSSVDEVI  169 (416)
T ss_dssp             EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC--CSCCSSCCCC
T ss_pred             EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc--cccCCCCCee
Confidence            9999987211 1467788899999999999998 8999999999999999999876      322221  1236778999


Q ss_pred             EEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeCC------CCCeEEEEEcCCC-cEEEEEeCC----cEEEEEcCC
Q 010669          362 SAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFDGH------VGAVTAISFSENG-YYLATAAHD----GVKLWDLRK  429 (504)
Q Consensus       362 ~~~~~pd-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~g-~~l~s~~~d----~v~vwd~~~  429 (504)
                      +++|+|+ +.+|++++.||.|++||+++++.+..+..|      ...|.+++|+|++ .+|++++.+    .|++||+++
T Consensus       170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~  249 (416)
T 2pm9_A          170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN  249 (416)
T ss_dssp             EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred             EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence            9999998 789999999999999999999988888766      7899999999997 688988887    599999998


Q ss_pred             C-cceeeee-cCCCCCCeeEEEECC-CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          430 L-KNFRSFE-SSDSETPTNSVDFDH-SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       430 ~-~~~~~~~-~~~~~~~v~~i~~~~-~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      + .....+. .+  ...|.+++|+| ++.+|++++.|  +++|++    .+++.+..+.+|  .+.|++++|+|+|
T Consensus       250 ~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~----~~~~~~~~~~~~--~~~v~~~~~s~~~  317 (416)
T 2pm9_A          250 ANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVLLWNP----ESAEQLSQFPAR--GNWCFKTKFAPEA  317 (416)
T ss_dssp             TTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEEEECS----SSCCEEEEEECS--SSCCCCEEECTTC
T ss_pred             CCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEEEeeC----CCCccceeecCC--CCceEEEEECCCC
Confidence            6 4555554 33  67899999999 99999999988  999998    678889999998  8899999999998

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.5e-33  Score=280.39  Aligned_cols=250  Identities=17%  Similarity=0.257  Sum_probs=216.2

Q ss_pred             ccCCCCCeEEEEeccC----C---CEEEEEeCCCcEEEEcCCCCce-----EEEcccC-----ccceeEEEEe----eCC
Q 010669          219 HKTSKPGIVSLDIHYS----K---DVIATGGVDTNAVLFDRPSGQI-----VTTLSGH-----SKKVTSVKFV----TEG  277 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~----~---~~l~sg~~dg~i~vwd~~~~~~-----~~~~~~h-----~~~v~~l~~s----~~~  277 (504)
                      ...|...|.+++|+|+    +   ++|++++.||.|++||+.+++.     +..+..|     ...|.+++|+    |++
T Consensus        58 ~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  137 (397)
T 1sq9_A           58 HFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL  137 (397)
T ss_dssp             EECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred             EecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence            3478899999999999    9   9999999999999999998886     8888888     5899999999    999


Q ss_pred             CE-EEEEeCCCcEEEEeCCC------CCCcc--eeEEe-------ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 010669          278 DL-FLTGSADKTVRVWQGSE------DGNYD--CKHTL-------KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS  341 (504)
Q Consensus       278 ~~-l~s~s~dg~i~iwd~~~------~~~~~--~~~~~-------~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~  341 (504)
                      ++ |++++.||.|++||+..      .....  ....+       ..|...|.+++|+|++ +|++++.||.|++||+++
T Consensus       138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~  216 (397)
T 1sq9_A          138 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  216 (397)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC
Confidence            99 99999999999999987      42211  11144       4488999999999999 999999999999999999


Q ss_pred             CeEEEEeecCCCCCC---CCCeEEEEECCCCCEEEEEeCC---CcEEEEEcCCCceeeeeeC-------------CCCCe
Q 010669          342 GICLTQVSDAGTDGR---PEGYTSAAFHPDGLILGTGTSE---ALVKIWDVKSQANVAKFDG-------------HVGAV  402 (504)
Q Consensus       342 ~~~~~~~~~~~~~~~---~~~v~~~~~~pdg~~l~~g~~d---g~I~iwd~~~~~~~~~~~~-------------~~~~i  402 (504)
                      ++.+..+..  ..+|   ...+.+++|+|++.+|++++.|   |.|++||+++++.+..+.+             |...|
T Consensus       217 ~~~~~~~~~--~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  294 (397)
T 1sq9_A          217 LRPLYNFES--QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV  294 (397)
T ss_dssp             TEEEEEEEC--CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCE
T ss_pred             CceeEEEec--cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcE
Confidence            988887762  0125   7789999999999999999999   9999999999999999988             99999


Q ss_pred             EEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee------cC-------------CCCCCeeEEEECCCC--------
Q 010669          403 TAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE------SS-------------DSETPTNSVDFDHSG--------  454 (504)
Q Consensus       403 ~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~------~~-------------~~~~~v~~i~~~~~g--------  454 (504)
                      .+++|+|++.+|++++.|+ |++||+++++.+..+.      .+             .+...|.+++|+|+|        
T Consensus       295 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~  374 (397)
T 1sq9_A          295 MSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGAD  374 (397)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCT
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccc
Confidence            9999999999999999998 9999999999888887      32             015789999999998        


Q ss_pred             --CEEEEEeCc--EEEEEeec
Q 010669          455 --SYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       455 --~~l~~~~~d--i~vw~~~~  471 (504)
                        ++|++++.|  |++|++..
T Consensus       375 ~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          375 LNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             TSCEEEEEETTTEEEEEEEEC
T ss_pred             ccceEEEecCCCcEEEEEcCC
Confidence              799999988  99999843

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=297.50  Aligned_cols=240  Identities=11%  Similarity=0.056  Sum_probs=197.0

Q ss_pred             CCCCeEEEEeccCC---------CEEEE-------------------EeCCCcEEEEcCCCCce----EEEcccCcccee
Q 010669          222 SKPGIVSLDIHYSK---------DVIAT-------------------GGVDTNAVLFDRPSGQI----VTTLSGHSKKVT  269 (504)
Q Consensus       222 ~~~~I~~~~~s~~~---------~~l~s-------------------g~~dg~i~vwd~~~~~~----~~~~~~h~~~v~  269 (504)
                      +.+.|.+|+|+|++         ++||+                   ++.||+|+||++.+++.    ...+.+|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            46788899999876         56666                   45788999999987764    234667889999


Q ss_pred             EEEEeeC------CCEEEEEeCCCcEEEEeCCCCCCc--------ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEE
Q 010669          270 SVKFVTE------GDLFLTGSADKTVRVWQGSEDGNY--------DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC  335 (504)
Q Consensus       270 ~l~~s~~------~~~l~s~s~dg~i~iwd~~~~~~~--------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~  335 (504)
                      +++|+|+      +.+|++++.||+|++||+..+...        .....+.+|...|.+++|+++ ..|++|+.||+|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence            9999996      579999999999999999764211        123467789999999999985 5899999999999


Q ss_pred             EEECCCCeE-EEEeecCCCCCCCCCeEEE--EECCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeCCCC--CeEEEEEcC
Q 010669          336 FYDLSSGIC-LTQVSDAGTDGRPEGYTSA--AFHPDG-LILGTGTSEALVKIWDVKSQANVAKFDGHVG--AVTAISFSE  409 (504)
Q Consensus       336 iwd~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~pdg-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~--~i~~l~~s~  409 (504)
                      +||++++.. ...+.     +|...|.++  +|+|+| .+|++|+.||+|+|||+++++.+..+.+|..  .|.+++|+|
T Consensus       291 lWD~~~~~~~~~~~~-----~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp  365 (524)
T 2j04_B          291 EFDLTDPEVPSFYDQ-----VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP  365 (524)
T ss_dssp             EEETTBCSSCSEEEE-----CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred             EEECCCCCCceEEee-----cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence            999997643 23333     677899999  578888 8999999999999999999888777777653  588999999


Q ss_pred             CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          410 NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       410 ~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      ++..|++++.|+ |++||++++.++..+..|  ...|++++|+|+|++|++|+.|  |++|+.
T Consensus       366 ~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH--~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          366 QIYSYIYSDGASSLRAVPSRAAFAVHPLVSR--ETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             TTTEEEEECSSSEEEEEETTCTTCCEEEEEC--SSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             CcCeEEEeCCCCcEEEEECcccccceeeecC--CCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            999999999998 999999999888877765  6899999999999999999999  888864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.6e-33  Score=280.75  Aligned_cols=260  Identities=20%  Similarity=0.349  Sum_probs=229.8

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee--CCCEEEEEeCCCcEEEEeCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ..+|...|.+++|++++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|++  ++.++++|+.||+|++||+..
T Consensus       158 ~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~  236 (464)
T 3v7d_B          158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK  236 (464)
T ss_dssp             ECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC
T ss_pred             EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC
Confidence            45799999999999988 999999999999999999999999999999999999995  778999999999999999987


Q ss_pred             CCCcc--------------------eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCC
Q 010669          297 DGNYD--------------------CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR  356 (504)
Q Consensus       297 ~~~~~--------------------~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  356 (504)
                      .....                    ....+.+|...|.++  +++++++++++.||.|++||+++++.+..+.     +|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~  309 (464)
T 3v7d_B          237 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-----GH  309 (464)
T ss_dssp             CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-----CC
T ss_pred             CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----CC
Confidence            53211                    255677899989887  5679999999999999999999999888775     67


Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceee
Q 010669          357 PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS  435 (504)
Q Consensus       357 ~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~  435 (504)
                      ...|.+++|+|++.++++|+.||.|++||+++++.+..+.+|...|.++.|+  +.+|++++.|+ |++||++++.....
T Consensus       310 ~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence            7899999999999999999999999999999999999999999999999996  68999999998 99999998876655


Q ss_pred             eecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEE-ccCCCCCCceeEEEEe
Q 010669          436 FESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKT-FPDLSGTGAASFLFLF  497 (504)
Q Consensus       436 ~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~-~~~h~~~~~v~~l~~~  497 (504)
                      ...   ...+..++|++++.+|++++++ +++|++    .+++.+.. +.+|  .+.|.+++|.
T Consensus       388 ~~~---~~~~~~~~~~~~~~~l~~~~dg~i~iwd~----~~g~~~~~~~~~~--~~~v~~v~~~  442 (464)
T 3v7d_B          388 YHH---TNLSAITTFYVSDNILVSGSENQFNIYNL----RSGKLVHANILKD--ADQIWSVNFK  442 (464)
T ss_dssp             EEC---TTCCCEEEEEECSSEEEEEETTEEEEEET----TTCCEEESCTTTT--CSEEEEEEEE
T ss_pred             ecC---CCCccEEEEEeCCCEEEEecCCeEEEEEC----CCCcEEehhhccC--CCcEEEEEec
Confidence            542   4578889999999999999966 999999    67788876 5566  7899999996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-34  Score=277.84  Aligned_cols=257  Identities=16%  Similarity=0.245  Sum_probs=204.9

Q ss_pred             EeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC------Cccee
Q 010669          230 DIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG------NYDCK  303 (504)
Q Consensus       230 ~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~  303 (504)
                      .+.+++++|++|+.||.|++||+.+++.+..+.  ...|.++.|+|+   +++++.|++|++|+.....      ....+
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            445678899999999999999999999888776  567888899887   9999999999999766310      11223


Q ss_pred             EEec-cCCcCeEEEEEcc--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010669          304 HTLK-DHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL  380 (504)
Q Consensus       304 ~~~~-~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~  380 (504)
                      ..+. +|.+.|.+++|+|  +++++++++.||.|++||+++++.......    .+...+.+++|+|+|.+|++|+.||.
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~----~~~~~i~~~~~~pdg~~lasg~~dg~  193 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA----KSDVEYSSGVLHKDSLLLALYSPDGI  193 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC----CSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec----CCCCceEEEEECCCCCEEEEEcCCCE
Confidence            3333 6778999999999  999999999999999999999988655432    34457999999999999999999999


Q ss_pred             EEEEEcCCCcee-eeeeC-CCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCC-CCCCe--eEEEECCCCC
Q 010669          381 VKIWDVKSQANV-AKFDG-HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSD-SETPT--NSVDFDHSGS  455 (504)
Q Consensus       381 I~iwd~~~~~~~-~~~~~-~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~-~~~~v--~~i~~~~~g~  455 (504)
                      |++||+++++.+ ..+.. |.++|++++|+|+|.+|++++++.|++||+++.+.+..+.... +...+  .+++|+|+|+
T Consensus       194 i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  273 (343)
T 3lrv_A          194 LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK  273 (343)
T ss_dssp             EEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred             EEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence            999999999887 78887 9999999999999999999996669999999988766554311 12233  4699999999


Q ss_pred             EEEEEeC-c--EEEEEeeccCcccee----EEEccCCCCCCceeEEEEe
Q 010669          456 YLAVASA-D--IRVYQVASVKADWNC----IKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       456 ~l~~~~~-d--i~vw~~~~~~~~~~~----i~~~~~h~~~~~v~~l~~~  497 (504)
                      +|++++. +  ++||++....+.|..    ...+.+|  .+.+..+.+.
T Consensus       274 ~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~  320 (343)
T 3lrv_A          274 NMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSD--TADFTDMDVV  320 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC------CCCCEEEEE
T ss_pred             EEEEecCCCCcEEEEEEcccccceEecCceeEecCcc--ccccceeEEE
Confidence            9999876 5  999999877777887    5666666  5566666543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.2e-32  Score=279.94  Aligned_cols=265  Identities=22%  Similarity=0.400  Sum_probs=224.2

Q ss_pred             ccCCCCC-eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          219 HKTSKPG-IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       219 ~~~~~~~-I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ..+|... +.++.+  ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|++||+.++
T Consensus       117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~  193 (464)
T 3v7d_B          117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG  193 (464)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT
T ss_pred             EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC
Confidence            4567666 466655  57899999999999999999999999999999999999999887 8999999999999999876


Q ss_pred             CCcceeEEeccCCcCeEEEEEc--cCCCEEEEEeCCCeEEEEECCCCeEEEEeec------------------CCCCCCC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVH--ATNKYFVTASLDNTWCFYDLSSGICLTQVSD------------------AGTDGRP  357 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~--p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------------~~~~~~~  357 (504)
                         .+...+.+|.+.|.+++|+  ++++++++|+.||.|++||++++........                  ....+|.
T Consensus       194 ---~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          194 ---CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             ---EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             ---cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence               6788888999999999998  4778999999999999999988754321100                  0012556


Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeee
Q 010669          358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF  436 (504)
Q Consensus       358 ~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~  436 (504)
                      ..+.++  ++++.++++|+.||.|++||+++++.+..+.+|...|.+++|+|++.+|++|+.|+ |++||+++++.+..+
T Consensus       271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  348 (464)
T 3v7d_B          271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  348 (464)
T ss_dssp             SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            667666  67789999999999999999999999999999999999999999999999999999 999999999998888


Q ss_pred             ecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          437 ESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       437 ~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ..+  ...|.++.|+  +.+|++++.|  +++|++    .+......+. |  ...+..+.|+++|+.
T Consensus       349 ~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~----~~~~~~~~~~-~--~~~~~~~~~~~~~~~  405 (464)
T 3v7d_B          349 QGH--TALVGLLRLS--DKFLVSAAADGSIRGWDA----NDYSRKFSYH-H--TNLSAITTFYVSDNI  405 (464)
T ss_dssp             CCC--SSCEEEEEEC--SSEEEEEETTSEEEEEET----TTCCEEEEEE-C--TTCCCEEEEEECSSE
T ss_pred             eCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEEC----CCCceeeeec-C--CCCccEEEEEeCCCE
Confidence            765  6789999997  6899999998  999998    4444444442 3  567888899998865

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-33  Score=277.85  Aligned_cols=241  Identities=21%  Similarity=0.290  Sum_probs=214.7

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc-
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY-  300 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~-  300 (504)
                      |...|++++|+|++++|++|+.||.|++|| .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++... 
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            677999999999999999999999999999 678888999999999999999999999999999999999998653210 


Q ss_pred             ----------------------------------------------------ceeEEeccCCcCeEEEEEccCCCEEEEE
Q 010669          301 ----------------------------------------------------DCKHTLKDHTAEVQAVTVHATNKYFVTA  328 (504)
Q Consensus       301 ----------------------------------------------------~~~~~~~~h~~~v~~l~~~p~~~~l~s~  328 (504)
                                                                          .....+..|...|.+++|+|++++|+++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  265 (425)
T 1r5m_A          186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA  265 (425)
T ss_dssp             EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence                                                                1123455788899999999999999999


Q ss_pred             eCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEc
Q 010669          329 SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS  408 (504)
Q Consensus       329 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s  408 (504)
                      +.||.|++||+++++....+.     .|...+.+++|+|++ ++++++.||.|++||+++++.+..+..|...|.+++|+
T Consensus       266 ~~d~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          266 SDDGTLRIWHGGNGNSQNCFY-----GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             ETTSCEEEECSSSBSCSEEEC-----CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred             cCCCEEEEEECCCCccceEec-----CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence            999999999999988777764     567889999999999 99999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCc-EEEEEcCCCc--------------------ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EE
Q 010669          409 ENGYYLATAAHDG-VKLWDLRKLK--------------------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IR  465 (504)
Q Consensus       409 ~~g~~l~s~~~d~-v~vwd~~~~~--------------------~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~  465 (504)
                      |++.+|++++.|+ |++||++++.                    .+..+..+.....|.+++|+|++++|++++.|  |+
T Consensus       340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  419 (425)
T 1r5m_A          340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS  419 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCE
T ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEE
Confidence            9999999999998 9999999887                    67777665211289999999999999999988  99


Q ss_pred             EEEe
Q 010669          466 VYQV  469 (504)
Q Consensus       466 vw~~  469 (504)
                      +|++
T Consensus       420 iw~~  423 (425)
T 1r5m_A          420 VVAI  423 (425)
T ss_dssp             EEEC
T ss_pred             EEee
Confidence            9997

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=274.84  Aligned_cols=240  Identities=19%  Similarity=0.249  Sum_probs=205.9

Q ss_pred             CCCCCeEEEEeccC---CCEEEEEeCCCcEEEEcCCCCc-eEEEcccCccceeEEEE------eeCCCEEEEEeCCCcEE
Q 010669          221 TSKPGIVSLDIHYS---KDVIATGGVDTNAVLFDRPSGQ-IVTTLSGHSKKVTSVKF------VTEGDLFLTGSADKTVR  290 (504)
Q Consensus       221 ~~~~~I~~~~~s~~---~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~l~~------s~~~~~l~s~s~dg~i~  290 (504)
                      .|..+|.+++|+|+   +++|++|+.||.|++||+.+++ .+..+.+|...|.++.|      +|++++|++++.||.|+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~  142 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK  142 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence            67889999999998   6999999999999999999887 88889999999999965      67899999999999999


Q ss_pred             EEeCCCCCCcceeEEeccCCc----CeEEEE----EccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669          291 VWQGSEDGNYDCKHTLKDHTA----EVQAVT----VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~~h~~----~v~~l~----~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  362 (504)
                      +||+..+.  .....+..|.+    .|.++.    |+|+++++++++.||.|++||+++++.....      .+...+.+
T Consensus       143 vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~v~~  214 (357)
T 3i2n_A          143 VWDPRQKD--DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET------NIKNGVCS  214 (357)
T ss_dssp             EECTTSCS--SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE------ECSSCEEE
T ss_pred             EEeCCCCC--CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec------CCCCceEE
Confidence            99998753  24555555444    899998    7889999999999999999999999875544      45578999


Q ss_pred             EEECC---CCCEEEEEeCCCcEEEEEcCCCceeeeee-----CCCCCeEEEEEcCCCc-EEEEEeCCc-EEEEEcCCCc-
Q 010669          363 AAFHP---DGLILGTGTSEALVKIWDVKSQANVAKFD-----GHVGAVTAISFSENGY-YLATAAHDG-VKLWDLRKLK-  431 (504)
Q Consensus       363 ~~~~p---dg~~l~~g~~dg~I~iwd~~~~~~~~~~~-----~~~~~i~~l~~s~~g~-~l~s~~~d~-v~vwd~~~~~-  431 (504)
                      ++|+|   ++.+|++|+.||.|++||+++++.+..+.     +|...|++++|+|++. +|++++.|+ |++||++.+. 
T Consensus       215 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  294 (357)
T 3i2n_A          215 LEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ  294 (357)
T ss_dssp             EEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred             EEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence            99999   99999999999999999999877665554     8999999999999998 899999998 9999998643 


Q ss_pred             ------------------ceeeeecCCCCCCeeEEEECCCCCEEE-EEeCc--EEEEEee
Q 010669          432 ------------------NFRSFESSDSETPTNSVDFDHSGSYLA-VASAD--IRVYQVA  470 (504)
Q Consensus       432 ------------------~~~~~~~~~~~~~v~~i~~~~~g~~l~-~~~~d--i~vw~~~  470 (504)
                                        .+..+..+  ...|.+++|+|+|++|+ +++.|  ++||++.
T Consensus       295 ~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          295 RSKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             C--CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             cccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence                              33444444  67899999999999998 78887  9999993

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.9e-32  Score=263.91  Aligned_cols=246  Identities=22%  Similarity=0.372  Sum_probs=214.6

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|...|.+++|+|++++|++|+.||.|++|+............+...+..+.+++++.+|++|+.|+.+++||.....
T Consensus        82 l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~  161 (340)
T 4aow_A           82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC  161 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc
Confidence            46789999999999999999999999999999999998888888899999999999999999999999999999987642


Q ss_pred             CcceeEEeccCCcCeEEEEEccCC--CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATN--KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                        .......+|...+..++|++++  .++++++.|+.|++||+++++....+.     +|...|++++|+|++++|++|+
T Consensus       162 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s  234 (340)
T 4aow_A          162 --KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-----GHTGYLNTVTVSPDGSLCASGG  234 (340)
T ss_dssp             --EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEE
T ss_pred             --eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-----CCCCcEEEEEECCCCCEEEEEe
Confidence              3444556899999999998865  578899999999999999999888775     6778999999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeec-------CCCCCCeeEEE
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES-------SDSETPTNSVD  449 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~-------~~~~~~v~~i~  449 (504)
                      .||.|++||+++.+.+..+..+ ..|.++.|+|++.+++++.++.|++||++++..+..+..       ..+...|++++
T Consensus       235 ~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  313 (340)
T 4aow_A          235 KDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA  313 (340)
T ss_dssp             TTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEE
T ss_pred             CCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE
Confidence            9999999999999999888854 689999999998877666544499999998776655542       23467899999


Q ss_pred             ECCCCCEEEEEeCc--EEEEEeecc
Q 010669          450 FDHSGSYLAVASAD--IRVYQVASV  472 (504)
Q Consensus       450 ~~~~g~~l~~~~~d--i~vw~~~~~  472 (504)
                      |+|+|++|++|+.|  |+||++.++
T Consensus       314 ~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          314 WSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             ECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            99999999999999  999999553

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-33  Score=280.99  Aligned_cols=247  Identities=19%  Similarity=0.292  Sum_probs=212.2

Q ss_pred             cccCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCCC-------ceEEEcccCccceeEEEEeeCC-CEEEEEeCCCc
Q 010669          218 LHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKT  288 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg~  288 (504)
                      ...+|...|++++|+| ++++|++|+.||.|++||+.++       +.+..+.+|...|.+++|+|++ ++|++|+.||.
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence            3567899999999999 8999999999999999999887       5678889999999999999998 69999999999


Q ss_pred             EEEEeCCCCCCcceeEEe--ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC-CeEEEEE
Q 010669          289 VRVWQGSEDGNYDCKHTL--KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE-GYTSAAF  365 (504)
Q Consensus       289 i~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~  365 (504)
                      |++||+.++   .....+  ..|...|.+++|+|++++|++++.||.|++||+++++.+..+..    .|.. .+.++.|
T Consensus       156 i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~  228 (402)
T 2aq5_A          156 ILVWDVGTG---AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR----PHEGTRPVHAVF  228 (402)
T ss_dssp             EEEEETTTT---EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC----SSCSSSCCEEEE
T ss_pred             EEEEECCCC---CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc----CCCCCcceEEEE
Confidence            999999876   677777  78999999999999999999999999999999999998887731    3333 4899999


Q ss_pred             CCCCCEEEEE---eCCCcEEEEEcCCCce-eeeee-CCCCCeEEEEEcCCCcEEEE-EeCCc-EEEEEcCCCcc-eeeee
Q 010669          366 HPDGLILGTG---TSEALVKIWDVKSQAN-VAKFD-GHVGAVTAISFSENGYYLAT-AAHDG-VKLWDLRKLKN-FRSFE  437 (504)
Q Consensus       366 ~pdg~~l~~g---~~dg~I~iwd~~~~~~-~~~~~-~~~~~i~~l~~s~~g~~l~s-~~~d~-v~vwd~~~~~~-~~~~~  437 (504)
                      +|++.+|++|   +.|+.|++||+++++. +.... .|...+.+++|+|++.+|++ |+.|+ |++||+.+++. +..+.
T Consensus       229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~  308 (402)
T 2aq5_A          229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS  308 (402)
T ss_dssp             CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred             cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence            9999999999   7999999999998764 33332 46778999999999999875 44677 99999998875 55555


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCcEEEEEeec
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASADIRVYQVAS  471 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~  471 (504)
                      .+.+...+.+++|+|++.++++++..+++|++..
T Consensus       309 ~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~  342 (402)
T 2aq5_A          309 MFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE  342 (402)
T ss_dssp             EECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred             ccccCCcccceEEecccccceecceeEEEEEcCC
Confidence            5545688999999999999886544499999954

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.2e-33  Score=315.00  Aligned_cols=269  Identities=18%  Similarity=0.305  Sum_probs=243.7

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|...|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.||+|++||+.++ 
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-  689 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG-  689 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC-
Confidence            4578999999999999999999999999999999999999999999999999999999999999999999999999886 


Q ss_pred             CcceeEEeccCCcCeEEEEEcc--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                        ..+..+.+|...|.+++|+|  ++.++++|+.||.|++||++++.....+.     +|...|++++|+|++.++++|+
T Consensus       690 --~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~l~s~s  762 (1249)
T 3sfz_A          690 --KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-----GHTNSVNHCRFSPDDELLASCS  762 (1249)
T ss_dssp             --CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-----CCSSCEEEEEECSSTTEEEEEE
T ss_pred             --ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec-----CCCCCEEEEEEecCCCEEEEEE
Confidence              67888899999999999999  45689999999999999999999888775     6788999999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeeeC-------------CCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCC
Q 010669          377 SEALVKIWDVKSQANVAKFDG-------------HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSET  443 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~-------------~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~  443 (504)
                      .||.|++||+++++....+..             +...+.+++|+|+|.++++++.+.+.+||+.++.....+... +..
T Consensus       763 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~-~~~  841 (1249)
T 3sfz_A          763 ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG-HHS  841 (1249)
T ss_dssp             SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECS-SSS
T ss_pred             CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCC-CCC
Confidence            999999999998877665532             233788999999999999998766999999999887777632 367


Q ss_pred             CeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          444 PTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       444 ~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .+.+++|+|++.++++++.+  +++|++    .++..+..+.+|  .+.|+++.|+|+|+.
T Consensus       842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~----~~~~~~~~~~~h--~~~v~~v~~spdg~~  896 (1249)
T 3sfz_A          842 TIQYCDFSPYDHLAVIALSQYCVELWNI----DSRLKVADCRGH--LSWVHGVMFSPDGSS  896 (1249)
T ss_dssp             CCCEEEECSSTTEEEEECSSSCEEEEET----TTTEEEEEECCC--SSCEEEEEECTTSSE
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEc----CCCceeeecCCC--ccceEEEEECCCCCE
Confidence            89999999999999999998  999998    678889999998  889999999999863

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=272.72  Aligned_cols=272  Identities=21%  Similarity=0.310  Sum_probs=222.3

Q ss_pred             eccccCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCCCceEEEc-------------ccCccceeEEEEee-CCCEE
Q 010669          216 HPLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTL-------------SGHSKKVTSVKFVT-EGDLF  280 (504)
Q Consensus       216 ~~~~~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~-------------~~h~~~v~~l~~s~-~~~~l  280 (504)
                      ......|.++|++++|+| ++++|++|+.||.|++||+.+++....+             .+|...|.+++|+| ++.+|
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            345667999999999999 9999999999999999999887554333             25999999999999 77899


Q ss_pred             EEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC---CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCC
Q 010669          281 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN---KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP  357 (504)
Q Consensus       281 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  357 (504)
                      ++++.||.|++||+.++   .....+. +...+.++.|+|.+   .++++++.||.|++||+++++....+.     .|.
T Consensus       116 ~s~~~d~~i~iwd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----~~~  186 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTL---QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-----GHR  186 (408)
T ss_dssp             EEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-----CCC
T ss_pred             EEEeCCCeEEEeeCCCC---ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-----CCC
Confidence            99999999999999875   4555543 77889999999854   499999999999999999998877765     577


Q ss_pred             CCeEEEEECCCCC-EEEEEeCCCcEEEEEcCCCc-eeeee---------------eCCCCCeEEEEEcCCCcEEEEEeCC
Q 010669          358 EGYTSAAFHPDGL-ILGTGTSEALVKIWDVKSQA-NVAKF---------------DGHVGAVTAISFSENGYYLATAAHD  420 (504)
Q Consensus       358 ~~v~~~~~~pdg~-~l~~g~~dg~I~iwd~~~~~-~~~~~---------------~~~~~~i~~l~~s~~g~~l~s~~~d  420 (504)
                      ..|.+++|+|++. +|++|+.||.|++||++++. .+..+               .+|...|.+++|+|+|.+|++++.|
T Consensus       187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  266 (408)
T 4a11_B          187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD  266 (408)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence            8999999999998 69999999999999998765 33333               5688899999999999999999999


Q ss_pred             c-EEEEEcCCCcceeeeecCCC----CCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeEE
Q 010669          421 G-VKLWDLRKLKNFRSFESSDS----ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASFL  494 (504)
Q Consensus       421 ~-v~vwd~~~~~~~~~~~~~~~----~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l  494 (504)
                      + |++||+++++....+.....    ......+.....+.+++++... +++|++    .+++.+..+.+|  .+.|+++
T Consensus       267 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~----~~~~~~~~~~~~--~~~v~~~  340 (408)
T 4a11_B          267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV----YSGEQITMLKGH--YKTVDCC  340 (408)
T ss_dssp             SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET----TTCCEEEEECCC--SSCEEEE
T ss_pred             CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC----cCCcceeeeccC--CCeEEEE
Confidence            8 99999998876554433211    1122233334445555555555 999998    778899999998  8899999


Q ss_pred             EEeecCcc
Q 010669          495 FLFVLGQT  502 (504)
Q Consensus       495 ~~~~~g~~  502 (504)
                      +|+|+|+.
T Consensus       341 ~~s~~~~~  348 (408)
T 4a11_B          341 VFQSNFQE  348 (408)
T ss_dssp             EEETTTTE
T ss_pred             EEcCCCCE
Confidence            99999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-33  Score=282.20  Aligned_cols=269  Identities=15%  Similarity=0.109  Sum_probs=222.2

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc---eEEEccc-------------------------------------
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ---IVTTLSG-------------------------------------  263 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~-------------------------------------  263 (504)
                      .++.+++|+++|++|+++ .++.|++||+.+++   .+..+..                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478899999999977666 57899999999988   6555543                                     


Q ss_pred             -----------------CccceeEEEEeeCCCEE-EEEeCCCcEEEEeCC--CCCCcceeEEec--cCCcCeEEEEEccC
Q 010669          264 -----------------HSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGS--EDGNYDCKHTLK--DHTAEVQAVTVHAT  321 (504)
Q Consensus       264 -----------------h~~~v~~l~~s~~~~~l-~s~s~dg~i~iwd~~--~~~~~~~~~~~~--~h~~~v~~l~~~p~  321 (504)
                                       |.+.|++++|+|++++| ++|+.||.|++||+.  ++   .....+.  .|...|.+++|+|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK---NVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS---SCEEEEEEEECSSCEEEEEECTT
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC---ceeeeeecccCCCCceEEEEcCC
Confidence                             33379999999999986 899999999999998  54   4455554  56789999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCCCCCCeEEEEECCC---CCEEEEEeCCCcEEEEEcCCCceeee-ee
Q 010669          322 NKYFVTASLDNTWCFYDLSSGICLT-QVSDAGTDGRPEGYTSAAFHPD---GLILGTGTSEALVKIWDVKSQANVAK-FD  396 (504)
Q Consensus       322 ~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~pd---g~~l~~g~~dg~I~iwd~~~~~~~~~-~~  396 (504)
                      +++|++|+.||.|++|++.++.... ...  ...+|...|++++|+|+   +.+|++|+.|+.|++||+++++.+.. +.
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  238 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQE--PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF  238 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCC--CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccce--eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec
Confidence            9999999999999999998876443 000  12257789999999999   99999999999999999999988877 55


Q ss_pred             CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC-----------------------CCCCCeeEEEECC
Q 010669          397 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS-----------------------DSETPTNSVDFDH  452 (504)
Q Consensus       397 ~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~-----------------------~~~~~v~~i~~~~  452 (504)
                      +|...|++++|+ +|.+|++++.|+ |++||+++++.+..+..+                       .....+.+++|+|
T Consensus       239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            899999999999 999999999998 999999999887777532                       1235789999999


Q ss_pred             CCCEEEEEe-Cc--EEEEEe-eccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          453 SGSYLAVAS-AD--IRVYQV-ASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       453 ~g~~l~~~~-~d--i~vw~~-~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ++++|++++ .+  |+||++ +........+..+..|   +.|.+++|.+++.+
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~  368 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQ  368 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEE
T ss_pred             CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEE
Confidence            999999998 55  999999 3323445778888875   67999999996544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.2e-32  Score=274.61  Aligned_cols=243  Identities=19%  Similarity=0.262  Sum_probs=210.4

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      ..|...|++|+|+|+|++|++|+.||.|++||+.+++.+..+.+|...+.++.|  ++.+|++|+.|+.+++||..... 
T Consensus       144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~-  220 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE-  220 (420)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccc-
Confidence            457788999999999999999999999999999999999999999999999877  57899999999999999987643 


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC-CEEEE--Ee
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGT--GT  376 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg-~~l~~--g~  376 (504)
                       ..+..+.+|...+..+.|+|+++++++++.|+.+++||..+++....... ....|...|.+++|+|++ .++++  |+
T Consensus       221 -~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~p~~~~~la~~~gs  298 (420)
T 4gga_A          221 -HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQGAVKAVAWCPWQSNVLATGGGT  298 (420)
T ss_dssp             -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE-EECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred             -eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee-eecccCCceeeeeeCCCcccEEEEEeec
Confidence             56677889999999999999999999999999999999987653211100 012567889999999954 56655  45


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEe--CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA--HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~--~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~  453 (504)
                      .|+.|++||+++++.+..+..| ..+.++.|++++..+++++  .|+ |++||+.+++.+..+..|  ...|++++|+|+
T Consensus       299 ~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~spd  375 (420)
T 4gga_A          299 SDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPD  375 (420)
T ss_dssp             TTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTT
T ss_pred             CCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCC
Confidence            7999999999999999888855 5789999999999888775  567 999999999999988876  679999999999


Q ss_pred             CCEEEEEeCc--EEEEEee
Q 010669          454 GSYLAVASAD--IRVYQVA  470 (504)
Q Consensus       454 g~~l~~~~~d--i~vw~~~  470 (504)
                      |++|++|+.|  |+||++.
T Consensus       376 g~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          376 GATVASAAADETLRLWRCF  394 (420)
T ss_dssp             SSCEEEEETTTEEEEECCS
T ss_pred             CCEEEEEecCCeEEEEECC
Confidence            9999999999  9999983

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=268.77  Aligned_cols=269  Identities=17%  Similarity=0.211  Sum_probs=222.8

Q ss_pred             eccccCCCCCeEEEEeccC---CCEEEEEeCCCcEEEEcCCC-CceE-EEcccCccceeEEEEeeCCCEEEEEeCCCcEE
Q 010669          216 HPLHKTSKPGIVSLDIHYS---KDVIATGGVDTNAVLFDRPS-GQIV-TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR  290 (504)
Q Consensus       216 ~~~~~~~~~~I~~~~~s~~---~~~l~sg~~dg~i~vwd~~~-~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~  290 (504)
                      .....+|...|++++|+|+   |++|++|+.||.|++||+.+ +..+ ..+.+|...|++++|+|++++|++++.||.|+
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  111 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK  111 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence            3456789999999999999   59999999999999999987 5554 78889999999999999999999999999999


Q ss_pred             EEeCCCCCCcceeEEeccCCcCeEEEEE--ccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669          291 VWQGSEDGNYDCKHTLKDHTAEVQAVTV--HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~--~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd  368 (504)
                      +||+.++   ... .+..|...|.+++|  +|++++|++++.||.|++||+++++.+..+...      ..+.++.+.+ 
T Consensus       112 iwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~-  180 (368)
T 3mmy_A          112 MWDLSSN---QAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP------ERCYCADVIY-  180 (368)
T ss_dssp             EEETTTT---EEE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS------SCEEEEEEET-
T ss_pred             EEEcCCC---Cce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC------CCceEEEecC-
Confidence            9999875   333 35679999999999  889999999999999999999999888777522      3566666664 


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeee--eCCCCCeEEEEEcCCCcE----EEEEeCCc-EEEEEcCCC---cceeeeec
Q 010669          369 GLILGTGTSEALVKIWDVKSQANVAKF--DGHVGAVTAISFSENGYY----LATAAHDG-VKLWDLRKL---KNFRSFES  438 (504)
Q Consensus       369 g~~l~~g~~dg~I~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~g~~----l~s~~~d~-v~vwd~~~~---~~~~~~~~  438 (504)
                       ..+++++.++.+++||++........  ..+...+.++.+.+++..    +++++.++ |++||++..   .....+..
T Consensus       181 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  259 (368)
T 3mmy_A          181 -PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC  259 (368)
T ss_dssp             -TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred             -CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence             47888899999999999876543322  223456667776665544    99999998 999999987   44555655


Q ss_pred             CCCC----------CCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          439 SDSE----------TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       439 ~~~~----------~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +...          ..|.+++|+|++++|++++.|  |++||+    .+++++..+.+|  .+.|++++|+|+|+.
T Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~----~~~~~~~~~~~~--~~~v~~~~~s~~g~~  329 (368)
T 3mmy_A          260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK----DARTKLKTSEQL--DQPISACCFNHNGNI  329 (368)
T ss_dssp             SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET----TTTEEEEECCCC--SSCEEEEEECTTSSC
T ss_pred             eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC----CCCcEEEEecCC--CCCceEEEECCCCCe
Confidence            4211          169999999999999999998  999998    678899999998  889999999999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.7e-32  Score=275.34  Aligned_cols=258  Identities=21%  Similarity=0.400  Sum_probs=225.7

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      .+..|..+|.++.|  ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|  ++++|++|+.||+|++||+.++
T Consensus       128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~  203 (435)
T 1p22_A          128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG  203 (435)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence            34567788999887  7999999999999999999999999999999999999999  7889999999999999999886


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                         .....+.+|...|.++.|+  ++++++|+.||.|++||++++........  ..+|...|.+++|  +++++++|+.
T Consensus       204 ---~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~--~~~~l~s~~~  274 (435)
T 1p22_A          204 ---EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRV--LVGHRAAVNVVDF--DDKYIVSASG  274 (435)
T ss_dssp             ---CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEE--ECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             ---cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeE--ecCCCCcEEEEEe--CCCEEEEEeC
Confidence               6788888999999999997  56999999999999999998765532111  2267789999999  7889999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY  456 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~  456 (504)
                      ||.|++||+++++.+..+.+|...|.++.|  ++.+|++|+.|+ |++||+++++.+..+..+  ...|.+++|  ++.+
T Consensus       275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~--~~~~  348 (435)
T 1p22_A          275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRF--DNKR  348 (435)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEC--CSSE
T ss_pred             CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEe--cCCE
Confidence            999999999999999999999999999999  578999999998 999999999998888765  678999999  7899


Q ss_pred             EEEEeCc--EEEEEeeccCcc-----ceeEEEccCCCCCCceeEEEE
Q 010669          457 LAVASAD--IRVYQVASVKAD-----WNCIKTFPDLSGTGAASFLFL  496 (504)
Q Consensus       457 l~~~~~d--i~vw~~~~~~~~-----~~~i~~~~~h~~~~~v~~l~~  496 (504)
                      |++|+.|  |++||+......     ..++..+.+|  .+.|++++|
T Consensus       349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~  393 (435)
T 1p22_A          349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF  393 (435)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE
T ss_pred             EEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe
Confidence            9999998  999998443211     1178889998  889999988

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.8e-33  Score=274.60  Aligned_cols=237  Identities=12%  Similarity=0.140  Sum_probs=202.2

Q ss_pred             cCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCCCceEEEccc---CccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          220 KTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSG---HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       220 ~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      .+|...|.+++|+| ++++|++++.||.|++||+.+ ..+..+..   |...|.+++|+|++++|++|+.||.|++||+.
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  193 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD  193 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC
Confidence            36889999999999 789999999999999999985 55555543   44889999999999999999999999999995


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCC----CeEEEEeecCCCCCCCCCeEEEEECC-CC
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSS----GICLTQVSDAGTDGRPEGYTSAAFHP-DG  369 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p-dg  369 (504)
                      .    .....+.+|...|.+++|+|+++ +|++++.|+.|++||+++    +.....+      +|...|.+++|+| ++
T Consensus       194 ~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~  263 (383)
T 3ei3_B          194 G----HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM------PHEKPVNAAYFNPTDS  263 (383)
T ss_dssp             S----CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE------ECSSCEEEEEECTTTS
T ss_pred             C----CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe------cCCCceEEEEEcCCCC
Confidence            3    67788889999999999999999 999999999999999998    5555554      3567899999999 99


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeCCC-----------------CCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc
Q 010669          370 LILGTGTSEALVKIWDVKSQANVAKFDGHV-----------------GAVTAISFSENGYYLATAAHDG-VKLWDLRKLK  431 (504)
Q Consensus       370 ~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-----------------~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~  431 (504)
                      .+|++++.||.|++||+++++....+.+|.                 +.+..++|+|+|.+  +++.|+ |++||+.+++
T Consensus       264 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~  341 (383)
T 3ei3_B          264 TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG  341 (383)
T ss_dssp             CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred             CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence            999999999999999999988777666443                 23444666666665  666777 9999999999


Q ss_pred             ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          432 NFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       432 ~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                      .+..+..+.+...+..++|+|++.+|+++++. |+||++
T Consensus       342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~  380 (383)
T 3ei3_B          342 LVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNR  380 (383)
T ss_dssp             EEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred             eeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEec
Confidence            99988876556778888999999999999854 999998

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.3e-32  Score=270.84  Aligned_cols=209  Identities=15%  Similarity=0.198  Sum_probs=163.9

Q ss_pred             ceeEEEEeeCCCEEEEE--eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE
Q 010669          267 KVTSVKFVTEGDLFLTG--SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC  344 (504)
Q Consensus       267 ~v~~l~~s~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~  344 (504)
                      .+.+++|+|||++++++  +.|++|+|||+.+.   .++..+ .|.+.|.+++|+|+|+++++++.+ .+.+|+..++..
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~---~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~  209 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDL---TEKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC  209 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTT---EEEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC---cEEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcc
Confidence            36789999999987654  47899999999885   566666 477889999999999999999855 566777777766


Q ss_pred             EEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC----cEEEEEcCCCce----eeeeeCCCCCeEEEEEcCCCcEEEE
Q 010669          345 LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA----LVKIWDVKSQAN----VAKFDGHVGAVTAISFSENGYYLAT  416 (504)
Q Consensus       345 ~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg----~I~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~g~~l~s  416 (504)
                      .....   ...|...+.+++|+|++.++++++.|+    .+++||+.....    ...+.+|...|++++|+|+|.+|++
T Consensus       210 ~~~~~---~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las  286 (365)
T 4h5i_A          210 IARKT---DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL  286 (365)
T ss_dssp             EEEEC---CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred             eeeee---cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE
Confidence            55443   236778899999999999999999887    688899876643    3456789999999999999999999


Q ss_pred             EeCCc-EEEEEcCCCcceeee-ecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeecc----CccceeEEEccCC
Q 010669          417 AAHDG-VKLWDLRKLKNFRSF-ESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV----KADWNCIKTFPDL  485 (504)
Q Consensus       417 ~~~d~-v~vwd~~~~~~~~~~-~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~----~~~~~~i~~~~~h  485 (504)
                      |+.|+ |+|||+++++++..+ ..|  ...|++++|+|||++|++|+.|  |+||++...    ...++.+..++.|
T Consensus       287 gs~D~~V~iwd~~~~~~~~~~~~gH--~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s~~~~l~kl~~~  361 (365)
T 4h5i_A          287 ASNDNSIALVKLKDLSMSKIFKQAH--SFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANYTSMKQKISKLEHH  361 (365)
T ss_dssp             EETTSCEEEEETTTTEEEEEETTSS--SSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC--------------
T ss_pred             EcCCCEEEEEECCCCcEEEEecCcc--cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCccCccccceeeecc
Confidence            99998 999999999988876 344  7899999999999999999999  999998532    1224455555544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.1e-32  Score=260.33  Aligned_cols=233  Identities=17%  Similarity=0.232  Sum_probs=192.5

Q ss_pred             EEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc--CCCEEEEEeCCCeEEE
Q 010669          259 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCF  336 (504)
Q Consensus       259 ~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~i  336 (504)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|+|||+... .......+.+|.+.|.+++|++  ++++|++|+.||+|++
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~-~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC-CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            457789999999999999999999999999999998752 2256778899999999999976  3899999999999999


Q ss_pred             EECCCCe--EEEEeecCCCCCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCC
Q 010669          337 YDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSEN  410 (504)
Q Consensus       337 wd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~pd--g~~l~~g~~dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~  410 (504)
                      ||++++.  ....+.     +|...|.+++|+|+  |.+|++|+.||.|++||++.+.  ....+.+|...|.+++|+|+
T Consensus        82 Wd~~~~~~~~~~~~~-----~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B           82 WKEENGRWSQIAVHA-----VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             EEBSSSCBCCCEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred             EEcCCCceEEEEEee-----cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence            9998874  233332     67789999999997  8999999999999999998763  24567889999999999997


Q ss_pred             -------------CcEEEEEeCCc-EEEEEcCCCc----ceeeeecCCCCCCeeEEEECCCC---CEEEEEeCc--EEEE
Q 010669          411 -------------GYYLATAAHDG-VKLWDLRKLK----NFRSFESSDSETPTNSVDFDHSG---SYLAVASAD--IRVY  467 (504)
Q Consensus       411 -------------g~~l~s~~~d~-v~vwd~~~~~----~~~~~~~~~~~~~v~~i~~~~~g---~~l~~~~~d--i~vw  467 (504)
                                   +.+|++|+.|+ |++||++++.    ....+..|  ...|.+++|+|++   .+|++++.|  |+||
T Consensus       157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H--~~~V~~v~~sp~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC--CCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence                         57999999998 9999998765    33445444  7799999999985   899999998  9999


Q ss_pred             EeeccCccceeEEEc--cCCCCCCceeEEEEeecCcc
Q 010669          468 QVASVKADWNCIKTF--PDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       468 ~~~~~~~~~~~i~~~--~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ++......+. ...+  ..|  .+.|.+++|+|+|+.
T Consensus       235 d~~~~~~~~~-~~~~~~~~~--~~~v~~~~~s~~g~~  268 (297)
T 2pm7_B          235 TQDNEQGPWK-KTLLKEEKF--PDVLWRASWSLSGNV  268 (297)
T ss_dssp             EESSTTSCCE-EEESSSSCC--SSCEEEEEECSSSCC
T ss_pred             EeCCCCCccc-eeeeecccC--CCcEEEEEECCCCCE
Confidence            9954322222 2233  355  789999999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-33  Score=302.73  Aligned_cols=250  Identities=20%  Similarity=0.332  Sum_probs=213.3

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCC--CCceEEEcccCccceeEEEEeeC--CCEEEEEeCCCcEEEEe
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP--SGQIVTTLSGHSKKVTSVKFVTE--GDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~s~dg~i~iwd  293 (504)
                      +..+|.++|++++|+|++++|++|+.||.|++||+.  +++.+..+.+|.+.|++++|+++  +++|++|+.||+|++||
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            457899999999999999999999999999999987  55778889999999999999987  89999999999999999


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC----
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP----  367 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p----  367 (504)
                      +.++ .......+.+|...|.+++|+|+  ++++++|+.||.|++||++++.......   ..+|...|.+++|+|    
T Consensus        84 ~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~~~v~~l~~~p~~~~  159 (753)
T 3jro_A           84 EENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPATIE  159 (753)
T ss_dssp             EETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE---EECCSSCEEEEEECCCC--
T ss_pred             CCCC-cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE---eecCCCceEEEEecCcccc
Confidence            9874 22367777889999999999999  9999999999999999998874332222   126778999999999    


Q ss_pred             ---------CCCEEEEEeCCCcEEEEEcCCC----ceeeeeeCCCCCeEEEEEcCC---CcEEEEEeCCc-EEEEEcCCC
Q 010669          368 ---------DGLILGTGTSEALVKIWDVKSQ----ANVAKFDGHVGAVTAISFSEN---GYYLATAAHDG-VKLWDLRKL  430 (504)
Q Consensus       368 ---------dg~~l~~g~~dg~I~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~---g~~l~s~~~d~-v~vwd~~~~  430 (504)
                               ++.++++|+.||.|++||++++    .....+.+|.+.|++++|+|+   |.+|++++.|+ |++||++++
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence                     5899999999999999999887    456677889999999999999   99999999999 999999986


Q ss_pred             cce---eeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeec
Q 010669          431 KNF---RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       431 ~~~---~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~  471 (504)
                      ...   .......+...|.+++|+|+|.+|++++.|  |++|++..
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            421   112223346789999999999999999988  99999853

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.2e-32  Score=269.19  Aligned_cols=246  Identities=15%  Similarity=0.183  Sum_probs=209.4

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE--EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT--TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ...|...|.+++|+|++++|++++.||.|++||+.+++...  .+..|...|.+++|+|++++|++++.||.|++||+..
T Consensus        48 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~  127 (372)
T 1k8k_C           48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ  127 (372)
T ss_dssp             EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred             ecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC
Confidence            45788999999999999999999999999999998886544  3467999999999999999999999999999999987


Q ss_pred             CCCcceeEEe-ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECC------------------CCeEEEEeecCCCCCCC
Q 010669          297 DGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS------------------SGICLTQVSDAGTDGRP  357 (504)
Q Consensus       297 ~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~~  357 (504)
                      .........+ ..|...|.+++|+|++++|++++.||.|++||++                  .++.+..+.     .|.
T Consensus       128 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  202 (372)
T 1k8k_C          128 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-----SSC  202 (372)
T ss_dssp             TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-----CCS
T ss_pred             CCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-----CCC
Confidence            6432233333 5789999999999999999999999999999954                  566666654     667


Q ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC--Cc--c
Q 010669          358 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK--LK--N  432 (504)
Q Consensus       358 ~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~--~~--~  432 (504)
                      ..+.+++|+|++.+|++++.||.|++||+++++.+..+..|...|.+++|+|++.+|++| .|+ |++||++.  +.  .
T Consensus       203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~  281 (372)
T 1k8k_C          203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF  281 (372)
T ss_dssp             SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE
T ss_pred             CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE
Confidence            889999999999999999999999999999999999999999999999999999999888 565 99999987  32  1


Q ss_pred             e------------------------------------eeeecCCCCCCeeEEEEC-CCC---CEEEEEeCc--EEEEEee
Q 010669          433 F------------------------------------RSFESSDSETPTNSVDFD-HSG---SYLAVASAD--IRVYQVA  470 (504)
Q Consensus       433 ~------------------------------------~~~~~~~~~~~v~~i~~~-~~g---~~l~~~~~d--i~vw~~~  470 (504)
                      +                                    ..+. ..|...|++++|. ++|   .+|++|+.|  |++|++.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             CCCCCCC--------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             eeccCccccchhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence            0                                    1111 1347799999966 676   999999999  9999984


Q ss_pred             c
Q 010669          471 S  471 (504)
Q Consensus       471 ~  471 (504)
                      .
T Consensus       361 ~  361 (372)
T 1k8k_C          361 S  361 (372)
T ss_dssp             H
T ss_pred             C
Confidence            3

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.3e-32  Score=271.32  Aligned_cols=257  Identities=19%  Similarity=0.323  Sum_probs=221.0

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEc--ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL--SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      .++.|+||++ ++|++|. |++|+|||..+++....+  .+|...|++|+|+|+|++|++|+.||+|++||+.++   ..
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---~~  181 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KR  181 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---cE
Confidence            3568999974 6888775 899999999999887765  467888999999999999999999999999999886   77


Q ss_pred             eEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEE-EEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          303 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL-TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      +..+.+|...+.++.++  +.++++|+.|+.+++||....... ..+.     +|...+..+.|+|+|.++++++.||.|
T Consensus       182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-----~h~~~~~~~~~~~~g~~l~s~~~D~~v  254 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS-----GHSQEVCGLRWAPDGRHLASGGNDNLV  254 (420)
T ss_dssp             EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEec-----ccccceeeeeecCCCCeeeeeeccccc
Confidence            88889999999998875  789999999999999999875443 3343     677899999999999999999999999


Q ss_pred             EEEEcCCCc----eeeeeeCCCCCeEEEEEcCCC-cEEEEE--eCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669          382 KIWDVKSQA----NVAKFDGHVGAVTAISFSENG-YYLATA--AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       382 ~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~g-~~l~s~--~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~  453 (504)
                      ++||..+++    .+..+..|...|.+++|+|++ .+++++  +.|+ |++||+++++....+..+   ..+.++.|+++
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~---~~v~~~~~~~~  331 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPH  331 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS---SCEEEEEEETT
T ss_pred             eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc---cceeeeeecCC
Confidence            999998765    345667799999999999965 555554  4567 999999999988888764   57999999999


Q ss_pred             CCEEEEEe--Cc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          454 GSYLAVAS--AD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       454 g~~l~~~~--~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +..+++++  .|  |+|||+    .+++++..+.+|  .+.|++++|+|+|+.
T Consensus       332 ~~~lv~~sg~~d~~I~iwd~----~~~~~v~~l~gH--~~~V~~l~~spdg~~  378 (420)
T 4gga_A          332 YKELISGHGFAQNQLVIWKY----PTMAKVAELKGH--TSRVLSLTMSPDGAT  378 (420)
T ss_dssp             TTEEEEEECTTTCCEEEEET----TTCCEEEEECCC--SSCEEEEEECTTSSC
T ss_pred             CCeEEEEEecCCCEEEEEEC----CCCcEEEEEcCC--CCCEEEEEEcCCCCE
Confidence            99998875  34  999998    778999999999  889999999999964

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-33  Score=277.45  Aligned_cols=208  Identities=13%  Similarity=0.125  Sum_probs=173.2

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc---eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ---IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~  294 (504)
                      ...+|...|.+++|+|++++|++|+.||.|++||+.+++   ....+.+|...|.+++|+|++++|++|+.||.|++||+
T Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  129 (377)
T 3dwl_C           50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYF  129 (377)
T ss_dssp             CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC
T ss_pred             EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEE
Confidence            345789999999999999999999999999999999877   67788899999999999999999999999999999999


Q ss_pred             CCCCCcceeEEecc-CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe---------------EEEEeecCCCCCCCC
Q 010669          295 SEDGNYDCKHTLKD-HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI---------------CLTQVSDAGTDGRPE  358 (504)
Q Consensus       295 ~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~---------------~~~~~~~~~~~~~~~  358 (504)
                      ..+..+.....+.. |...|.+++|+|++++|++++.||.|++||++.+.               .......  . +|..
T Consensus       130 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~  206 (377)
T 3dwl_C          130 EQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE--Y-PSGG  206 (377)
T ss_dssp             -----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC--C-CCSS
T ss_pred             CCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc--c-cCCc
Confidence            88644445677777 99999999999999999999999999999996322               1111111  2 6778


Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce----eeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcC
Q 010669          359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN----VAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLR  428 (504)
Q Consensus       359 ~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~  428 (504)
                      .|.+++|+|++++|++|+.||.|++||+++++.    +..+.+|...|.+++|+|+|.+|++++.+++.+|+..
T Consensus       207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence            899999999999999999999999999999887    7888999999999999999999999988886688775

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.8e-31  Score=269.93  Aligned_cols=259  Identities=20%  Similarity=0.428  Sum_probs=230.7

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|...|.+++|+  ++++++|+.||.|++||+.+++.+..+.+|...|.++.|+  ++.+++|+.||+|++||+.++
T Consensus       154 ~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~  229 (445)
T 2ovr_B          154 TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG  229 (445)
T ss_dssp             ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred             EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence            345789999999997  6799999999999999999999999999999999999994  678999999999999999876


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                         .....+.+|...|.++.|  +++++++|+.||.|++||+++++.+..+.     +|...+.+++|  ++.++++|+.
T Consensus       230 ---~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~  297 (445)
T 2ovr_B          230 ---QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-----GHTNRVYSLQF--DGIHVVSGSL  297 (445)
T ss_dssp             ---CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-----CCSSCEEEEEE--CSSEEEEEET
T ss_pred             ---cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec-----CCCCceEEEEE--CCCEEEEEeC
Confidence               677788899999999999  78999999999999999999998888775     67788999999  7899999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC-CCCCeeEEEECCCCC
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-SETPTNSVDFDHSGS  455 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~-~~~~v~~i~~~~~g~  455 (504)
                      ||.|++||+++++.+..+.+|...+.++.+  ++.+|++|+.|+ |++||+++++.+..+..+. +...|.+++|+  ++
T Consensus       298 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~  373 (445)
T 2ovr_B          298 DTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN  373 (445)
T ss_dssp             TSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS
T ss_pred             CCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CC
Confidence            999999999999999999999999999888  567999999998 9999999999888887632 46789999995  68


Q ss_pred             EEEEEeCc--EEEEEeeccCccceeEEEc-----cCCCCCCceeEEEEeecCcc
Q 010669          456 YLAVASAD--IRVYQVASVKADWNCIKTF-----PDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       456 ~l~~~~~d--i~vw~~~~~~~~~~~i~~~-----~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +|++|+.|  |++|++    .+++.+..+     .+|  .+.|++++|+|+|..
T Consensus       374 ~l~s~~~dg~v~iwd~----~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~  421 (445)
T 2ovr_B          374 FVITSSDDGTVKLWDL----KTGEFIRNLVTLESGGS--GGVVWRIRASNTKLV  421 (445)
T ss_dssp             EEEEEETTSEEEEEET----TTCCEEEEEEECTTGGG--TCEEEEEEECSSEEE
T ss_pred             EEEEEeCCCeEEEEEC----CCCceeeeeeccccCCC--CceEEEEEecCCEEE
Confidence            99999988  999998    567777766     345  789999999999875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.1e-32  Score=277.80  Aligned_cols=245  Identities=21%  Similarity=0.356  Sum_probs=209.0

Q ss_pred             cCCCCCeEEEEeccC-CCEEEEEeCCCcEEEEcCCC----------CceEEEcccCccceeEEEEeeCCC-EEEEEeCCC
Q 010669          220 KTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPS----------GQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADK  287 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~~----------~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg  287 (504)
                      ..|.+.|++++|+|+ +.+|++|+.||.|++|++.+          ...+..+.+|...|.+++|+|++. +|++|+.||
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  204 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH  204 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred             EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence            457889999999997 67999999999999999876          567788889999999999999888 999999999


Q ss_pred             cEEEEeCCCCCC----cceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCC---eEEEEeecCCCCCCCCC
Q 010669          288 TVRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSG---ICLTQVSDAGTDGRPEG  359 (504)
Q Consensus       288 ~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~  359 (504)
                      .|++||+.....    ......+.+|...|.+++|+| ++.+|++++.||.|++||++++   .....+.     .|...
T Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~  279 (430)
T 2xyi_A          205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----AHTAE  279 (430)
T ss_dssp             CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-----CCSSC
T ss_pred             eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-----cCCCC
Confidence            999999987422    122456678999999999999 6789999999999999999987   3444443     56788


Q ss_pred             eEEEEECCCCC-EEEEEeCCCcEEEEEcCC-CceeeeeeCCCCCeEEEEEcCCC-cEEEEEeCCc-EEEEEcCCC-----
Q 010669          360 YTSAAFHPDGL-ILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKL-----  430 (504)
Q Consensus       360 v~~~~~~pdg~-~l~~g~~dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~g-~~l~s~~~d~-v~vwd~~~~-----  430 (504)
                      |++++|+|++. +|++|+.||.|++||+++ ..++..+..|...|++++|+|++ .+|++++.|+ |++||++..     
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~  359 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  359 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence            99999999886 799999999999999998 56788899999999999999998 5789999998 999999873     


Q ss_pred             ---------cceeeeecCCCCCCeeEEEECCCCC-EEEEEeCc--EEEEEeec
Q 010669          431 ---------KNFRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVAS  471 (504)
Q Consensus       431 ---------~~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~~~d--i~vw~~~~  471 (504)
                               ..+..+.  .+...|.+++|+|++. +|++++.|  |+||++..
T Consensus       360 ~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          360 TEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             HHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             ccccccCCcceEEEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence                     2333333  3467899999999999 88888888  99999843

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-31  Score=261.62  Aligned_cols=245  Identities=17%  Similarity=0.237  Sum_probs=217.8

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC-----CcEEEE
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRVW  292 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d-----g~i~iw  292 (504)
                      ....|...|.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|+++++++++.+     |.|++|
T Consensus        69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~  147 (369)
T 3zwl_B           69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY  147 (369)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred             hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence            345788999999999999999999999999999999999988888 88899999999999999999999     999999


Q ss_pred             eCCCCCCc--------ceeEEeccCCc--CeEEEEEccCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCCCCCCeE
Q 010669          293 QGSEDGNY--------DCKHTLKDHTA--EVQAVTVHATNKYFVTASLDNTWCFYDLSS-GICLTQVSDAGTDGRPEGYT  361 (504)
Q Consensus       293 d~~~~~~~--------~~~~~~~~h~~--~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~  361 (504)
                      |+......        .....+..|.+  .+.+++|+|++++|++++.||.|++||+++ +.....+.     .|...|.
T Consensus       148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~  222 (369)
T 3zwl_B          148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-----LHEKSIS  222 (369)
T ss_dssp             EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-----CCSSCEE
T ss_pred             EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-----cCCCcee
Confidence            98765321        13344455665  899999999999999999999999999998 67666665     5678899


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc---------------EEEEE
Q 010669          362 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG---------------VKLWD  426 (504)
Q Consensus       362 ~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~---------------v~vwd  426 (504)
                      +++|+|++.+|++++.||.|++||+++++.+..+. +...+.+++|+|++.++++++.++               +++||
T Consensus       223 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d  301 (369)
T 3zwl_B          223 DMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH  301 (369)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred             EEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence            99999999999999999999999999999988888 778999999999999999988763               89999


Q ss_pred             cCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeec
Q 010669          427 LRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~  471 (504)
                      +.+++.+..+..+  ...|.+++|+|++++|++++.|  |++|++..
T Consensus       302 ~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          302 KIFEEEIGRVQGH--FGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             TTTCCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             cCCCcchhheecc--cCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            9999988888766  6789999999999999999988  99999943

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.7e-32  Score=292.86  Aligned_cols=244  Identities=20%  Similarity=0.345  Sum_probs=221.9

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ...|..+|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||+|++||+.++.
T Consensus        51 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~  130 (814)
T 3mkq_A           51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW  130 (814)
T ss_dssp             EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS
T ss_pred             EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc
Confidence            44688999999999999999999999999999999999999999999999999999999999999999999999998642


Q ss_pred             CcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC--CCCEEEEE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTG  375 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g  375 (504)
                        .....+.+|...|.+++|+| +++.|++++.||.|++||+.++.....+..    .+...+.+++|+|  ++.++++|
T Consensus       131 --~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~  204 (814)
T 3mkq_A          131 --ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT----GQERGVNYVDYYPLPDKPYMITA  204 (814)
T ss_dssp             --EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC----CCTTCCCEEEECCSTTCCEEEEE
T ss_pred             --eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec----CCCCCEEEEEEEECCCCCEEEEE
Confidence              55677789999999999999 889999999999999999998877766652    3447899999999  99999999


Q ss_pred             eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669          376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG  454 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g  454 (504)
                      +.||.|++||+++++.+..+.+|...|++++|+|+|.+|++++.|+ |++||+.+++....+..+  ...+.+++|+|+|
T Consensus       205 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~  282 (814)
T 3mkq_A          205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTG  282 (814)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS--SSSEEEEEECTTC
T ss_pred             eCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC--CCcEEEEEEccCC
Confidence            9999999999999999999999999999999999999999999998 999999999888888765  5789999999999


Q ss_pred             C--EEEEEeCc-EEEEEee
Q 010669          455 S--YLAVASAD-IRVYQVA  470 (504)
Q Consensus       455 ~--~l~~~~~d-i~vw~~~  470 (504)
                      .  ++++++.+ +.+|++.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~  301 (814)
T 3mkq_A          283 RKNYIASGFDNGFTVLSLG  301 (814)
T ss_dssp             GGGEEEEEETTEEEEEECS
T ss_pred             CceEEEEEeCCCEEEEEcC
Confidence            7  67777777 8888864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8.5e-32  Score=306.20  Aligned_cols=275  Identities=21%  Similarity=0.352  Sum_probs=239.3

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee--CCCEEEEEeCCCcEEEEeCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ..+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|  ++.++++|+.||.|++||+.+
T Consensus       653 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~  732 (1249)
T 3sfz_A          653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ  732 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS
T ss_pred             eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Confidence            356899999999999999999999999999999999999999999999999999999  555899999999999999988


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC------------------------
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG------------------------  352 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------------------------  352 (504)
                      +   .+...+.+|.+.|.+++|+|+++++++++.||.|++||+.++.....+....                        
T Consensus       733 ~---~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d  809 (1249)
T 3sfz_A          733 K---ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD  809 (1249)
T ss_dssp             S---SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT
T ss_pred             c---chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC
Confidence            6   6778888999999999999999999999999999999998887655443110                        


Q ss_pred             --------------------------CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEE
Q 010669          353 --------------------------TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAIS  406 (504)
Q Consensus       353 --------------------------~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~  406 (504)
                                                ..+|...+.+++|+|++.++++|+.||.|++||+.++..+..+.+|.+.|++++
T Consensus       810 g~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~  889 (1249)
T 3sfz_A          810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM  889 (1249)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEE
Confidence                                      015667899999999999999999999999999999999999999999999999


Q ss_pred             EcCCCcEEEEEeCCc-EEEEEcCCCcce-----------------------------eeeecC------CCCCCeeEEEE
Q 010669          407 FSENGYYLATAAHDG-VKLWDLRKLKNF-----------------------------RSFESS------DSETPTNSVDF  450 (504)
Q Consensus       407 ~s~~g~~l~s~~~d~-v~vwd~~~~~~~-----------------------------~~~~~~------~~~~~v~~i~~  450 (504)
                      |+|+|.+|++++.|+ |++||+.+....                             ..+...      .....+.+++|
T Consensus       890 ~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  969 (1249)
T 3sfz_A          890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL  969 (1249)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEE
Confidence            999999999999998 999997642110                             000000      01357899999


Q ss_pred             CCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          451 DHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       451 ~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +|+++++++|+.+  +++|++    .++..+..+.+|  .+.|++++|+|+|+.
T Consensus       970 sp~g~~l~~g~~~g~i~i~d~----~~~~~~~~~~~h--~~~v~~l~~s~dg~~ 1017 (1249)
T 3sfz_A          970 SPHLEYVAFGDEDGAIKIIEL----PNNRVFSSGVGH--KKAVRHIQFTADGKT 1017 (1249)
T ss_dssp             CTTSSEEEEEETTSCCEEEET----TTTSCEEECCCC--SSCCCCEEECSSSSC
T ss_pred             cCCCCEEEEEcCCCCEEEEEc----CCCceeeecccC--CCceEEEEECCCCCE
Confidence            9999999999998  999998    667788889998  889999999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8e-32  Score=283.31  Aligned_cols=266  Identities=18%  Similarity=0.209  Sum_probs=230.8

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----ceEEEcccCccc-eeEEEEee--CCCEEEEEeCCCcEEE
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKK-VTSVKFVT--EGDLFLTGSADKTVRV  291 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~-v~~l~~s~--~~~~l~s~s~dg~i~i  291 (504)
                      ...|...|.+++|+|++++|++++ ++.|.+||+.++    +....+.+|... |++++|+|  ++++|++|+.||.|++
T Consensus        14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v   92 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV   92 (615)
T ss_dssp             CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred             CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence            346788999999999999999998 889999999998    889999999999 99999999  9999999999999999


Q ss_pred             EeCCCCC-----CcceeEEeccCCcCeEEEEEccCCCEEEEEeCC----CeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669          292 WQGSEDG-----NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       292 wd~~~~~-----~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  362 (504)
                      ||+.++.     .......+..|...|.+++|+|+++++++++.+    +.|.+||  .++....+.     +|...|.+
T Consensus        93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~-----~~~~~v~~  165 (615)
T 1pgu_A           93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS-----GHSQRINA  165 (615)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC-----SCSSCEEE
T ss_pred             EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee-----cCCccEEE
Confidence            9996420     225667778899999999999999999999988    6888888  455555554     67889999


Q ss_pred             EEECCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeCCCC---CeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcceeee
Q 010669          363 AAFHPDGL-ILGTGTSEALVKIWDVKSQANVAKFDGHVG---AVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSF  436 (504)
Q Consensus       363 ~~~~pdg~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~---~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~~~  436 (504)
                      ++|+|++. ++++++.||.|++||+.+++.+..+.+|..   .|++++|+|+ +.+|++++.++ |++||+++++.+..+
T Consensus       166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          166 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             EEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence            99999998 899999999999999999999999999999   9999999999 99999999998 999999999988877


Q ss_pred             ecC--CCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCC--CCCceeEEEEe
Q 010669          437 ESS--DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLS--GTGAASFLFLF  497 (504)
Q Consensus       437 ~~~--~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~--~~~~v~~l~~~  497 (504)
                      ...  .+...|.+++|+ ++.+|++++.|  +++|++    .+++.+..+..+.  ....+.++.+.
T Consensus       246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~----~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (615)
T 1pgu_A          246 EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV----TTSKCVQKWTLDKQQLGNQQVGVVAT  307 (615)
T ss_dssp             CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEET----TTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred             cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEEC----CCCcEEEEEcCCCCcccCceeEEEeC
Confidence            221  236899999999 99999999988  999998    6677888877652  12456666664

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-33  Score=285.04  Aligned_cols=244  Identities=10%  Similarity=0.084  Sum_probs=199.5

Q ss_pred             cCCCCCeEEEEeccC------CCEEEEEeCCCcEEEEcCCCCce-----------EEEcccCccceeEEEEeeCCCEEEE
Q 010669          220 KTSKPGIVSLDIHYS------KDVIATGGVDTNAVLFDRPSGQI-----------VTTLSGHSKKVTSVKFVTEGDLFLT  282 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~------~~~l~sg~~dg~i~vwd~~~~~~-----------~~~~~~h~~~v~~l~~s~~~~~l~s  282 (504)
                      ..|.+.|.+++|+|+      +.+||+|+.||+|++||+.++..           ...+.+|...|++++|+++ ..|++
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~las  282 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVC  282 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEE
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEE
Confidence            356788999999997      57999999999999999976532           2467889999999999975 48999


Q ss_pred             EeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEE--EEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669          283 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAV--TVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG  359 (504)
Q Consensus       283 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l--~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  359 (504)
                      |+.||+|++||+.++.  .....+.+|...|.++  .|+|++ .+|++|+.|++|++||+++++....+...   .....
T Consensus       283 gs~DgtV~lWD~~~~~--~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~---~~~~~  357 (524)
T 2j04_B          283 GFKNGFVAEFDLTDPE--VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR---FRGSN  357 (524)
T ss_dssp             EETTSEEEEEETTBCS--SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE---CSCCS
T ss_pred             EeCCCEEEEEECCCCC--CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc---cccCc
Confidence            9999999999998642  3445678999999999  567887 89999999999999999987765544321   11124


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc-------
Q 010669          360 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK-------  431 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~-------  431 (504)
                      +.+++|+|++..+++++.|++|++||++++.++..+.+|.+.|++|+|+|+|.+|++|+.|+ |++||+....       
T Consensus       358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~  437 (524)
T 2j04_B          358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNS  437 (524)
T ss_dssp             CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC---
T ss_pred             ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccC
Confidence            78999999999999999999999999999998888999999999999999999999999998 9999864210       


Q ss_pred             -------ceeee----------------------------ecCCCCCCeeEEEECCCCC---EEEEEeCc--EEEEEe
Q 010669          432 -------NFRSF----------------------------ESSDSETPTNSVDFDHSGS---YLAVASAD--IRVYQV  469 (504)
Q Consensus       432 -------~~~~~----------------------------~~~~~~~~v~~i~~~~~g~---~l~~~~~d--i~vw~~  469 (504)
                             .+..+                            ....+...|.+++|+|++.   .+++|+.+  |+||++
T Consensus       438 ~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l  515 (524)
T 2j04_B          438 SATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL  515 (524)
T ss_dssp             ---CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred             ccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence                   00001                            0112356789999999964   99999987  999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.6e-31  Score=281.03  Aligned_cols=263  Identities=14%  Similarity=0.198  Sum_probs=234.6

Q ss_pred             cccCCCCC-eEEEEecc--CCCEEEEEeCCCcEEEEcCCCC--------ceEEEcccCccceeEEEEeeCCCEEEEEeCC
Q 010669          218 LHKTSKPG-IVSLDIHY--SKDVIATGGVDTNAVLFDRPSG--------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD  286 (504)
Q Consensus       218 ~~~~~~~~-I~~~~~s~--~~~~l~sg~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d  286 (504)
                      ...+|... |++++|+|  ++++|++|+.||.|++||+.++        +....+..|...|.+++|+|++++|++++.+
T Consensus        58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  137 (615)
T 1pgu_A           58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  137 (615)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC
Confidence            35678889 99999999  9999999999999999999754        6777888999999999999999999999988


Q ss_pred             ----CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC---
Q 010669          287 ----KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE---  358 (504)
Q Consensus       287 ----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---  358 (504)
                          +.|.+||.  +   .....+.+|...|.+++|+|+++ .+++++.||.|++||+.+++....+.     +|..   
T Consensus       138 ~~~~~~v~~~d~--~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-----~~~~~~~  207 (615)
T 1pgu_A          138 RDNFGVFISWDS--G---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-----THHKQGS  207 (615)
T ss_dssp             SSCSEEEEETTT--C---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-----SSSCTTC
T ss_pred             CCCccEEEEEEC--C---CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec-----ccCCCCc
Confidence                78999983  2   56778889999999999999998 89999999999999999998888775     4566   


Q ss_pred             CeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeee-e---CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc
Q 010669          359 GYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKF-D---GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN  432 (504)
Q Consensus       359 ~v~~~~~~pd-g~~l~~g~~dg~I~iwd~~~~~~~~~~-~---~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~  432 (504)
                      .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .   .|...|.+++|+ ++.+|++++.|+ |++||+++++.
T Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence            8999999999 999999999999999999999999998 6   899999999999 999999999998 99999999998


Q ss_pred             eeeeecCC--CCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          433 FRSFESSD--SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       433 ~~~~~~~~--~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      +..+..+.  ....+.++.|. ++.++++++.+  +++|++    ..++.+..+.+|  .+.|++++| |+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~----~~~~~~~~~~~~--~~~v~~~~~-~~  349 (615)
T 1pgu_A          287 VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL----GHDEVLKTISGH--NKGITALTV-NP  349 (615)
T ss_dssp             EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET----TEEEEEEEECCC--SSCEEEEET-TT
T ss_pred             EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC----CCCcEEEEEeCC--CCCEEEEEe-cC
Confidence            88887642  13567888886 89999999988  999998    668888899888  788999888 65

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.5e-31  Score=266.45  Aligned_cols=254  Identities=23%  Similarity=0.500  Sum_probs=224.4

Q ss_pred             ccCCCCCe-EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          219 HKTSKPGI-VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       219 ~~~~~~~I-~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ..+|.+.| .+  ++++|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+  ++++++|+.||+|++||+.++
T Consensus       114 l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~  189 (445)
T 2ovr_B          114 LKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG  189 (445)
T ss_dssp             EECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT
T ss_pred             ecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC
Confidence            45677665 55  45569999999999999999999999999999999999999996  679999999999999999886


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                         .....+.+|...|.++.|+  ++.+++|+.||.|++||+.+++....+.     +|...+.+++|  ++.++++|+.
T Consensus       190 ---~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~  257 (445)
T 2ovr_B          190 ---ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM-----GHVAAVRCVQY--DGRRVVSGAY  257 (445)
T ss_dssp             ---EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE-----CCSSCEEEEEE--CSSCEEEEET
T ss_pred             ---cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc-----CCcccEEEEEE--CCCEEEEEcC
Confidence               6788889999999999995  6789999999999999999999888776     67788999999  7889999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY  456 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~  456 (504)
                      ||.|++||+++++.+..+.+|...|.++.|  ++.++++++.|+ |++||+++++.+..+..+  ...+.++.+  ++.+
T Consensus       258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~--~~~~  331 (445)
T 2ovr_B          258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMEL--KDNI  331 (445)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC--CSCEEEEEE--ETTE
T ss_pred             CCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC--cccEEEEEE--eCCE
Confidence            999999999999999999999999999999  889999999998 999999999988888765  567887777  5679


Q ss_pred             EEEEeCc--EEEEEeeccCccceeEEEccCCC-CCCceeEEEEee
Q 010669          457 LAVASAD--IRVYQVASVKADWNCIKTFPDLS-GTGAASFLFLFV  498 (504)
Q Consensus       457 l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~-~~~~v~~l~~~~  498 (504)
                      +++|+.|  |++||+    .+++.+..+.++. +.+.|+++++.+
T Consensus       332 l~~~~~dg~i~vwd~----~~~~~~~~~~~~~~~~~~v~~~~~~~  372 (445)
T 2ovr_B          332 LVSGNADSTVKIWDI----KTGQCLQTLQGPNKHQSAVTCLQFNK  372 (445)
T ss_dssp             EEEEETTSCEEEEET----TTCCEEEEECSTTSCSSCEEEEEECS
T ss_pred             EEEEeCCCeEEEEEC----CCCcEEEEEccCCCCCCCEEEEEECC
Confidence            9999988  999998    6678888887631 278899998853

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-31  Score=253.15  Aligned_cols=236  Identities=24%  Similarity=0.335  Sum_probs=206.5

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC---ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~  294 (504)
                      ....|...|.+++|+|++++|++|+.||.|++|++...   +.+..+.+|...|.++.|  +++++++++.||.|++|| 
T Consensus        54 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-  130 (313)
T 3odt_A           54 VVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-  130 (313)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-
T ss_pred             EeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-
Confidence            34567889999999999999999999999999997654   567788899999999999  678999999999999999 


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                       ..   .....+..|...|.++.|+| +++++++++.||.|++||  .+.....+..    .+...+.+++|+|++. ++
T Consensus       131 -~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~----~~~~~i~~~~~~~~~~-~~  199 (313)
T 3odt_A          131 -EG---SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSG----IHNDVVRHLAVVDDGH-FI  199 (313)
T ss_dssp             -TT---EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECS----SCSSCEEEEEEEETTE-EE
T ss_pred             -CC---cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEec----cCcccEEEEEEcCCCe-EE
Confidence             22   66777889999999999998 899999999999999999  4445555531    3678899999999998 99


Q ss_pred             EEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      +++.||.|++||+++++.+..+.+|...|++++|+|++ .|++++.|+ |++||+++++....+..+  ...+.+++|+|
T Consensus       200 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~  276 (313)
T 3odt_A          200 SCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP--AISIWSVDCMS  276 (313)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS--SSCEEEEEECT
T ss_pred             EccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc--CceEEEEEEcc
Confidence            99999999999999999999999999999999999999 588888888 999999999998888776  56899999999


Q ss_pred             CCCEEEEEeCc--EEEEEeec
Q 010669          453 SGSYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~~~~  471 (504)
                      +++++ +++.|  |++|++..
T Consensus       277 ~~~~~-~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          277 NGDII-VGSSDNLVRIFSQEK  296 (313)
T ss_dssp             TSCEE-EEETTSCEEEEESCG
T ss_pred             CCCEE-EEeCCCcEEEEeCCC
Confidence            99955 56666  99999843

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.3e-32  Score=274.62  Aligned_cols=245  Identities=15%  Similarity=0.140  Sum_probs=200.0

Q ss_pred             ccCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCCCceEEEcc--cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          219 HKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLS--GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ..+|.+.|++|+|+| ++++|++|+.||+|++||+.++.......  .+...+.+++|+|++.+|++|+.||.|++||+.
T Consensus       160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~  239 (435)
T 4e54_B          160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD  239 (435)
T ss_dssp             CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS
T ss_pred             ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC
Confidence            357899999999998 68899999999999999998665433333  344567899999999999999999999999987


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      .    ..+..+.+|...|.+++|+|+++ +|++|+.|+.|++||+++.+....+..  ..+|...|++++|+|+|.+|++
T Consensus       240 ~----~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~spdg~~l~s  313 (435)
T 4e54_B          240 G----KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY--SLPHRHPVNAACFSPDGARLLT  313 (435)
T ss_dssp             S----CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB--CCBCSSCEEECCBCTTSSEEEE
T ss_pred             c----ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE--eeeccccccceeECCCCCeeEE
Confidence            5    45667889999999999999876 788999999999999998765433321  2367889999999999999999


Q ss_pred             EeCCCcEEEEEcCCCceeeeeeCCCC------CeEEEEEcCCCcEEEEEe------------CCc-EEEEEcCCCcceee
Q 010669          375 GTSEALVKIWDVKSQANVAKFDGHVG------AVTAISFSENGYYLATAA------------HDG-VKLWDLRKLKNFRS  435 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~~~~~~~~~~------~i~~l~~s~~g~~l~s~~------------~d~-v~vwd~~~~~~~~~  435 (504)
                      |+.||.|+|||++++.....+..|..      .+....|+|++.+++++.            .++ |++||..+++.+..
T Consensus       314 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~  393 (435)
T 4e54_B          314 TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ  393 (435)
T ss_dssp             EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred             EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence            99999999999999988777765542      234567777777776664            234 99999999988877


Q ss_pred             eecCCCCCCeeEE-EECCCCCEEEEEeCc-EEEEEee
Q 010669          436 FESSDSETPTNSV-DFDHSGSYLAVASAD-IRVYQVA  470 (504)
Q Consensus       436 ~~~~~~~~~v~~i-~~~~~g~~l~~~~~d-i~vw~~~  470 (504)
                      +..+ +...|.++ +|+|+|.+|++|+.+ |+||++.
T Consensus       394 l~~~-~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~  429 (435)
T 4e54_B          394 LYDP-ESSGISSLNEFNPMGDTLASAMGYHILIWSQQ  429 (435)
T ss_dssp             ECCS-SCCCCCCEEEECTTSSCEEEECSSEEEECCCC
T ss_pred             EeCC-CCCcEEEEEEECCCCCEEEEEcCCcEEEEECC
Confidence            6543 25667776 699999999998876 9999983

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.4e-30  Score=250.39  Aligned_cols=256  Identities=18%  Similarity=0.321  Sum_probs=215.0

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc--cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS--GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  303 (504)
                      +.+|+||+++ +|++|. |++|+|||+.+++.+..+.  +|...|++++|+|++++|++|+.||+|++||+.++   +++
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~---~~~  102 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRL  102 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc---eeE
Confidence            4679999875 777764 9999999999999887664  67888999999999999999999999999999886   778


Q ss_pred             EEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 010669          304 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT-QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK  382 (504)
Q Consensus       304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~  382 (504)
                      ..+.+|...+.++.+  ++..+++++.++.+.+|+........ .+.     +|...+.++.+++++.+|++++.||.|+
T Consensus       103 ~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~~~d~~i~  175 (318)
T 4ggc_A          103 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLS-----GHSQEVCGLRWAPDGRHLASGGNDNLVN  175 (318)
T ss_dssp             EEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEc-----CccCceEEEEEcCCCCEEEEEecCccee
Confidence            888899998887655  57899999999999999998765443 333     6778899999999999999999999999


Q ss_pred             EEEcCCCce----eeeeeCCCCCeEEEEEcCCCc-EE--EEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669          383 IWDVKSQAN----VAKFDGHVGAVTAISFSENGY-YL--ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG  454 (504)
Q Consensus       383 iwd~~~~~~----~~~~~~~~~~i~~l~~s~~g~-~l--~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g  454 (504)
                      +||+++++.    ......+.+.|.++.++|++. .+  ++++.++ |++||.+..........   ...+..+.|++++
T Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~---~~~v~~~~~~~~~  252 (318)
T 4ggc_A          176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHY  252 (318)
T ss_dssp             EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEEETTT
T ss_pred             EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc---eeeeeeeeecccc
Confidence            999988753    344556788999999999754 33  3445556 99999998877665544   4679999999999


Q ss_pred             CEEEEEe--Cc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          455 SYLAVAS--AD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       455 ~~l~~~~--~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ..+++++  .|  |+|||+    .+++++.++.+|  .+.|++++|+|+|+.
T Consensus       253 ~~~~~~sg~~d~~i~iwd~----~~~~~~~~l~gH--~~~V~~l~~spdg~~  298 (318)
T 4ggc_A          253 KELISGHGFAQNQLVIWKY----PTMAKVAELKGH--TSRVLSLTMSPDGAT  298 (318)
T ss_dssp             TEEEEEECTTTCCEEEEET----TTCCEEEEECCC--SSCEEEEEECTTSSC
T ss_pred             cceEEEEEcCCCEEEEEEC----CCCcEEEEEcCC--CCCEEEEEEcCCCCE
Confidence            9988765  44  999998    778999999999  889999999999964

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.7e-32  Score=262.24  Aligned_cols=233  Identities=17%  Similarity=0.235  Sum_probs=185.9

Q ss_pred             EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc--CCCEEEEEeCCCeEEEE
Q 010669          260 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFY  337 (504)
Q Consensus       260 ~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~iw  337 (504)
                      .+.+|.+.|++++|+|+|++|++|+.|++|++||+.++. ...+..+.+|.+.|.+++|++  ++++|++|+.|++|++|
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            456899999999999999999999999999999997642 235677889999999999975  48999999999999999


Q ss_pred             ECCCCe--EEEEeecCCCCCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCce---eeeeeCCCCCeEEEEEcCC
Q 010669          338 DLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQAN---VAKFDGHVGAVTAISFSEN  410 (504)
Q Consensus       338 d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~pd--g~~l~~g~~dg~I~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~  410 (504)
                      |++++.  ....+.     +|...|.+++|+|+  +.+|++|+.||.|++||++.+..   ...+.+|...|.+++|+|+
T Consensus        87 d~~~~~~~~~~~~~-----~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A           87 REENGTWEKSHEHA-----GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             CCSSSCCCEEEEEC-----CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred             ECCCCcceEEEEcc-----CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence            999874  333332     67889999999997  88999999999999999987632   3556789999999999997


Q ss_pred             -----------------CcEEEEEeCCc-EEEEEcCCC---cceeeeecCCCCCCeeEEEECCCC----CEEEEEeCc--
Q 010669          411 -----------------GYYLATAAHDG-VKLWDLRKL---KNFRSFESSDSETPTNSVDFDHSG----SYLAVASAD--  463 (504)
Q Consensus       411 -----------------g~~l~s~~~d~-v~vwd~~~~---~~~~~~~~~~~~~~v~~i~~~~~g----~~l~~~~~d--  463 (504)
                                       +.+|++|+.|+ |++||++..   +....+..|  ...|.+++|+|++    .+|++++.|  
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D~~  239 (316)
T 3bg1_A          162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQDGR  239 (316)
T ss_dssp             CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred             cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCCCe
Confidence                             46899999998 999999755   344445444  6789999999987    899999999  


Q ss_pred             EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          464 IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       464 i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      |+||++............+..|  .+.|.+++|+|+|+.
T Consensus       240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~  276 (316)
T 3bg1_A          240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANI  276 (316)
T ss_dssp             EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCC
T ss_pred             EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCE
Confidence            9999985421111112234556  789999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=270.19  Aligned_cols=236  Identities=15%  Similarity=0.232  Sum_probs=197.1

Q ss_pred             CCeEEEEeccCC--CEEEEEeCCCcEEEEcCCCCceE---------------------------------------EE-c
Q 010669          224 PGIVSLDIHYSK--DVIATGGVDTNAVLFDRPSGQIV---------------------------------------TT-L  261 (504)
Q Consensus       224 ~~I~~~~~s~~~--~~l~sg~~dg~i~vwd~~~~~~~---------------------------------------~~-~  261 (504)
                      ..|++++|+|++  .+|++++.||.|++||+.++...                                       .. .
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            889999999998  79999999999999998764432                                       12 4


Q ss_pred             ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE-------EeccCCcCeEEEEEccCC-CEEEEEeCCCe
Q 010669          262 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH-------TLKDHTAEVQAVTVHATN-KYFVTASLDNT  333 (504)
Q Consensus       262 ~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~  333 (504)
                      .+|...|++++|+|++++|++| .||.|++||+....  ....       .+.+|...|.+++|+|++ ++|++|+.||.
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  250 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITD--RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT  250 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEE--EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC--ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe
Confidence            6899999999999999999998 79999999998432  2333       356899999999999998 99999999999


Q ss_pred             EEEEECCCCeE----EEEeecCCCCCCCC------------CeEEEEECCCCCEEEEEeCCCcEEEEEcCC-Cceeeeee
Q 010669          334 WCFYDLSSGIC----LTQVSDAGTDGRPE------------GYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFD  396 (504)
Q Consensus       334 i~iwd~~~~~~----~~~~~~~~~~~~~~------------~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~-~~~~~~~~  396 (504)
                      |++||++++..    ...+.     .|..            .|.+++|+|+|.+|++++. |.|++||+++ ++++..+.
T Consensus       251 i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~  324 (447)
T 3dw8_B          251 IRLCDMRASALCDRHSKLFE-----EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ  324 (447)
T ss_dssp             EEEEETTTCSSSCTTCEEEC-----CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE
T ss_pred             EEEEECcCCccccceeeEec-----cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee
Confidence            99999999875    45554     3333            8999999999999999999 9999999997 88888888


Q ss_pred             CCCCC---------------eEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC---------------------
Q 010669          397 GHVGA---------------VTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS---------------------  439 (504)
Q Consensus       397 ~~~~~---------------i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~---------------------  439 (504)
                      +|...               +..++|+|+|.+|++|+.|+ |++||+.+++.+. +..+                     
T Consensus       325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  403 (447)
T 3dw8_B          325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKR  403 (447)
T ss_dssp             SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCC
T ss_pred             ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCc
Confidence            88642               33499999999999999999 9999999877643 1111                     


Q ss_pred             ----------CCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          440 ----------DSETPTNSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       440 ----------~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                                .....|..++|+|++++|++++.+ +.+|.-
T Consensus       404 ~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~  444 (447)
T 3dw8_B          404 KKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD  444 (447)
T ss_dssp             CTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred             ccccccccccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence                      224568899999999999999998 999974

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.8e-31  Score=265.54  Aligned_cols=235  Identities=23%  Similarity=0.444  Sum_probs=207.8

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|...|.+++|  ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+  +.++++|+.||.|++||+.++
T Consensus       168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~  243 (435)
T 1p22_A          168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASP  243 (435)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSS
T ss_pred             EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCC
Confidence            34578999999998  78999999999999999999999999999999999999996  569999999999999999886


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                      ........+.+|...|.+++|  +++++++|+.||.|++||+++++.+..+.     +|...+.++.|  ++.++++|+.
T Consensus       244 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~g~~  314 (435)
T 1p22_A          244 TDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-----GHKRGIACLQY--RDRLVVSGSS  314 (435)
T ss_dssp             SCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEE--ETTEEEEEET
T ss_pred             CCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-----CCCCcEEEEEe--CCCEEEEEeC
Confidence            544444677899999999999  68999999999999999999999888876     66788999999  4789999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc---------ceeeeecCCCCCCeeE
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK---------NFRSFESSDSETPTNS  447 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~---------~~~~~~~~~~~~~v~~  447 (504)
                      ||.|++||+++++.+..+.+|...|.+++|  ++.+|++|+.|+ |++||++++.         .+..+..+  ...|.+
T Consensus       315 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~  390 (435)
T 1p22_A          315 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFR  390 (435)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCC
T ss_pred             CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEE
Confidence            999999999999999999999999999999  788999999999 9999998765         55566554  678999


Q ss_pred             EEECCCCCEEEEEeCc--EEEEEeec
Q 010669          448 VDFDHSGSYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       448 i~~~~~g~~l~~~~~d--i~vw~~~~  471 (504)
                      ++|  ++.+|++++.|  |++|++..
T Consensus       391 l~~--~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          391 LQF--DEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             EEE--CSSCEEECCSSSEEEEEC---
T ss_pred             EEe--CCCEEEEEeCCCEEEEEECCC
Confidence            999  78889999988  99999943

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-31  Score=289.43  Aligned_cols=276  Identities=17%  Similarity=0.167  Sum_probs=205.2

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE-----------EEcccCccceeEEEEeeC-CCEEEEEeCCCcE
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-----------TTLSGHSKKVTSVKFVTE-GDLFLTGSADKTV  289 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i  289 (504)
                      |...|++++|+|++++|++|+.||.|++||+.+++..           ..+.+|.+.|++++|+|+ +..|++|+.||+|
T Consensus        97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v  176 (902)
T 2oaj_A           97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL  176 (902)
T ss_dssp             CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE
Confidence            5678999999999999999999999999999988753           234679999999999995 5789999999999


Q ss_pred             EEEeCCCCCCcceeEEeccC------------------CcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 010669          290 RVWQGSEDGNYDCKHTLKDH------------------TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA  351 (504)
Q Consensus       290 ~iwd~~~~~~~~~~~~~~~h------------------~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  351 (504)
                       +||+.++   .+...+..|                  ...|.+++|+|+|++|++|+.||.|++||+++++.+......
T Consensus       177 -lWd~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~  252 (902)
T 2oaj_A          177 -TYSLVEN---EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVF  252 (902)
T ss_dssp             -EEETTTT---EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSS
T ss_pred             -EEECCCC---ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeec
Confidence             9999875   555556544                  578999999999999999999999999999998876531110


Q ss_pred             CCC-------------CCCCCeEEEEEC----CCC-CEEEEEeC------------------------------------
Q 010669          352 GTD-------------GRPEGYTSAAFH----PDG-LILGTGTS------------------------------------  377 (504)
Q Consensus       352 ~~~-------------~~~~~v~~~~~~----pdg-~~l~~g~~------------------------------------  377 (504)
                      ...             .+...|.+++|+    |++ .++++|+.                                    
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~  332 (902)
T 2oaj_A          253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK  332 (902)
T ss_dssp             CSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCS
T ss_pred             ccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCcc
Confidence            000             123467888884    432 34555533                                    


Q ss_pred             ----------------------------------------CCcEEEEEcCCCceeee-----------------------
Q 010669          378 ----------------------------------------EALVKIWDVKSQANVAK-----------------------  394 (504)
Q Consensus       378 ----------------------------------------dg~I~iwd~~~~~~~~~-----------------------  394 (504)
                                                              ||.|++||+.++.....                       
T Consensus       333 ~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~  412 (902)
T 2oaj_A          333 QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV  412 (902)
T ss_dssp             EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE
T ss_pred             ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEc
Confidence                                                    34455555544322111                       


Q ss_pred             ------------------eeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcce--eeee--c-----CCCCCCee
Q 010669          395 ------------------FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF--RSFE--S-----SDSETPTN  446 (504)
Q Consensus       395 ------------------~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~--~~~~--~-----~~~~~~v~  446 (504)
                                        +.+|...+.+++|+|+|.+|++|+.|+ |++||+.++...  ..+.  .     ..+...|.
T Consensus       413 ~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~  492 (902)
T 2oaj_A          413 PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVD  492 (902)
T ss_dssp             EHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEE
T ss_pred             CHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCcee
Confidence                              122233334455678999999999999 999999887432  1111  0     13467899


Q ss_pred             EEEECCCCCEEEEEeCc--EEEEEeeccCc-----------------------------------------cceeEEEcc
Q 010669          447 SVDFDHSGSYLAVASAD--IRVYQVASVKA-----------------------------------------DWNCIKTFP  483 (504)
Q Consensus       447 ~i~~~~~g~~l~~~~~d--i~vw~~~~~~~-----------------------------------------~~~~i~~~~  483 (504)
                      +++|+|+|++||+|+.|  |+||++.....                                         .++++..+.
T Consensus       493 svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~  572 (902)
T 2oaj_A          493 KISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH  572 (902)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC
T ss_pred             EEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE
Confidence            99999999999999999  99999965421                                         024678888


Q ss_pred             CCCCCCceeEEEEeecCccc
Q 010669          484 DLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       484 ~h~~~~~v~~l~~~~~g~~~  503 (504)
                      +|  .+.|++++|+|+|.++
T Consensus       573 ~h--~~~V~svafSpdG~lA  590 (902)
T 2oaj_A          573 AN--KGKTSAINNSNIGFVG  590 (902)
T ss_dssp             CC--SCSEEEEEECBTSEEE
T ss_pred             cC--CCcEEEEEecCCcEEE
Confidence            98  8899999999999554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.7e-31  Score=265.63  Aligned_cols=243  Identities=12%  Similarity=0.129  Sum_probs=177.5

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE-----EEcccCccceeEEEEee--------CCCEEEEEeCCCc
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-----TTLSGHSKKVTSVKFVT--------EGDLFLTGSADKT  288 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~-----~~~~~h~~~v~~l~~s~--------~~~~l~s~s~dg~  288 (504)
                      |...+....+++++.+|++|+.|++|++||..+++..     ..+.+|.+.|++++|+|        ++++|++|+.|++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            4445555666777889999999999999999887543     34689999999999998        7889999999999


Q ss_pred             EEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecC----------------
Q 010669          289 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDA----------------  351 (504)
Q Consensus       289 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~----------------  351 (504)
                      |+|||+.++   .+...+..|...|.+++|+|++. +|++++.||+|++||+++++........                
T Consensus       168 v~~Wd~~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          168 LIIWRLTDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             EEEEEEETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             EEEEECCCC---ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            999999775   55666678889999999999874 8999999999999999987654332210                


Q ss_pred             ----CCCCCCCCeEEEEEC-CCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEE------------------Ec
Q 010669          352 ----GTDGRPEGYTSAAFH-PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAIS------------------FS  408 (504)
Q Consensus       352 ----~~~~~~~~v~~~~~~-pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~------------------~s  408 (504)
                          ...+|...+.++.|+ |||..+++++.|+.+++||+..++....+..|...+..+.                  |+
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH  324 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred             eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence                113566788899987 7999999999999999999988776666655544443333                  33


Q ss_pred             C--CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          409 E--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       409 ~--~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                      +  ++.++++|+.|+ |++||+.++........+  ...|.+++|+|+|++||+++.+ +.+|.+
T Consensus       325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~--~~~V~svafspdG~~LA~as~~Gv~lvrL  387 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL--GMPIVDFCWHQDGSHLAIATEGSVLLTRL  387 (393)
T ss_dssp             SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC--SSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred             cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            3  345677888888 999999999887776655  5789999999999999999999 888887

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.1e-30  Score=248.06  Aligned_cols=242  Identities=18%  Similarity=0.254  Sum_probs=206.5

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      ..|...|++++|+|++++|++|+.||+|++||+.+++.+..+.+|...+.++.+  ++..+++++.++.+++|+..... 
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~-  140 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE-  140 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc-
Confidence            467888999999999999999999999999999999999999999988877654  67899999999999999987653 


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC-E--EEEEe
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-I--LGTGT  376 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~-~--l~~g~  376 (504)
                       .....+.+|...+..+.++++++++++++.||.|++||+++++........ ...+...|.+++++|++. +  +++++
T Consensus       141 -~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~  218 (318)
T 4ggc_A          141 -HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQGAVKAVAWCPWQSNVLATGGGT  218 (318)
T ss_dssp             -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE-ECCCCSCEEEEEECTTSTTEEEEEECT
T ss_pred             -eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee-ecccCCceEEEEecCCCCcEEEEEecC
Confidence             566777899999999999999999999999999999999876532211110 124567899999999654 3  34667


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEe--CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA--HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~--~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~  453 (504)
                      .++.|++||.+......... +...+..+.|++++..+++++  .|+ |++||+++++.+..+..|  ...|++++|+|+
T Consensus       219 ~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--~~~V~~l~~spd  295 (318)
T 4ggc_A          219 SDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPD  295 (318)
T ss_dssp             TTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTT
T ss_pred             CCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCC
Confidence            88999999998887766655 667899999999998887765  567 999999999999998876  689999999999


Q ss_pred             CCEEEEEeCc--EEEEEe
Q 010669          454 GSYLAVASAD--IRVYQV  469 (504)
Q Consensus       454 g~~l~~~~~d--i~vw~~  469 (504)
                      |++|++|+.|  |+|||+
T Consensus       296 g~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          296 GATVASAAADETLRLWRC  313 (318)
T ss_dssp             SSCEEEEETTTEEEEECC
T ss_pred             CCEEEEEecCCeEEEEEC
Confidence            9999999999  999998

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-30  Score=262.16  Aligned_cols=249  Identities=12%  Similarity=0.112  Sum_probs=207.6

Q ss_pred             cCCCCCeEEEEeccCCCEE-EEEeCCCcEEEEcCC--CCceEEEcc--cCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669          220 KTSKPGIVSLDIHYSKDVI-ATGGVDTNAVLFDRP--SGQIVTTLS--GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~--~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~  294 (504)
                      ..|.+.|.+++|+|++++| ++|+.||.|++||+.  +++.+..+.  .|...|.+++|+|++++|++|+.||.|++|++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            3567889999999999986 899999999999998  888888876  56789999999999999999999999999999


Q ss_pred             CCCCCcc-eeEEeccCCcCeEEEEEccC---CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669          295 SEDGNYD-CKHTLKDHTAEVQAVTVHAT---NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       295 ~~~~~~~-~~~~~~~h~~~v~~l~~~p~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~  370 (504)
                      ....... ....+.+|...|.+++|+|+   +++|++|+.|+.|++||++++..+..+.    .+|...|.+++|+ ++.
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~h~~~v~~~~~s-d~~  253 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL----FGHKHFVSSICCG-KDY  253 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC----CCCSSCEEEEEEC-STT
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee----cCCCCceEEEEEC-CCC
Confidence            8754322 44467789999999999999   9999999999999999999988776642    2677899999999 999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeeeC-------------------------CCCCeEEEEEcCCCcEEEEEe-CCc-EE
Q 010669          371 ILGTGTSEALVKIWDVKSQANVAKFDG-------------------------HVGAVTAISFSENGYYLATAA-HDG-VK  423 (504)
Q Consensus       371 ~l~~g~~dg~I~iwd~~~~~~~~~~~~-------------------------~~~~i~~l~~s~~g~~l~s~~-~d~-v~  423 (504)
                      +|++|+.||.|++||+++++.+..+..                         ....|.+++|+|++.+|++++ .++ |+
T Consensus       254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~  333 (450)
T 2vdu_B          254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII  333 (450)
T ss_dssp             EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence            999999999999999999998877753                         235799999999999999998 667 99


Q ss_pred             EEEc--CCC---cceeeeecCCCCCCeeEEEECCCCCEEEEEeC------c--EEEEEeeccCccc
Q 010669          424 LWDL--RKL---KNFRSFESSDSETPTNSVDFDHSGSYLAVASA------D--IRVYQVASVKADW  476 (504)
Q Consensus       424 vwd~--~~~---~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~------d--i~vw~~~~~~~~~  476 (504)
                      +||+  ..+   ..+..+..+   ..+.+++|+|++.++++++.      +  +.+|.++.....+
T Consensus       334 iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~  396 (450)
T 2vdu_B          334 ILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSF  396 (450)
T ss_dssp             EEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEE
T ss_pred             EEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeE
Confidence            9999  554   455555553   67999999996544444442      2  7999986544333

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-31  Score=266.61  Aligned_cols=240  Identities=14%  Similarity=0.204  Sum_probs=202.5

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCC---CCceEEEccc------------CccceeEEE--EeeCCCEEEEE
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP---SGQIVTTLSG------------HSKKVTSVK--FVTEGDLFLTG  283 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~---~~~~~~~~~~------------h~~~v~~l~--~s~~~~~l~s~  283 (504)
                      .|...|.+++|+|++++|++|+.||.|++||+.   +++....+.+            +...+.++.  +++++.+|++|
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            588999999999999999999999999999984   5554443332            455677776  45789999999


Q ss_pred             eCCCcEEEEeCCCCCCcceeEEecc--CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeE
Q 010669          284 SADKTVRVWQGSEDGNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT  361 (504)
Q Consensus       284 s~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  361 (504)
                      +.||.|++||+.+.   .++..+.+  |.+.|.+++|+|++++|++|+.||.|++||+++++.+..+..    .|...|.
T Consensus       189 ~~d~~i~iwd~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~  261 (437)
T 3gre_A          189 TNLSRVIIFDIRTL---ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF----GDHAPIT  261 (437)
T ss_dssp             ETTSEEEEEETTTC---CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC----TTCEEEE
T ss_pred             eCCCeEEEEeCCCC---eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec----CCCCceE
Confidence            99999999999886   66777777  889999999999999999999999999999999998887742    3456899


Q ss_pred             EEEECC----CCCEEEEEeCCCcEEEEEcCCCceeeeeeC--------------------------CCCCeEEEEEcCCC
Q 010669          362 SAAFHP----DGLILGTGTSEALVKIWDVKSQANVAKFDG--------------------------HVGAVTAISFSENG  411 (504)
Q Consensus       362 ~~~~~p----dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~--------------------------~~~~i~~l~~s~~g  411 (504)
                      +++|+|    ++.+|++|+.||.|++||+++++.+..+.+                          |...|++++|+ ++
T Consensus       262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~  340 (437)
T 3gre_A          262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND  340 (437)
T ss_dssp             EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred             EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence            996665    688999999999999999999987776654                          44568889999 77


Q ss_pred             cEEEEEeCCc-EEEEEcCCCcceeeeecCC-----------------------------------CCCCeeEEEECCC--
Q 010669          412 YYLATAAHDG-VKLWDLRKLKNFRSFESSD-----------------------------------SETPTNSVDFDHS--  453 (504)
Q Consensus       412 ~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~i~~~~~--  453 (504)
                      .+|++|+.|+ |++||+.+++....+..+.                                   |...|++++|+++  
T Consensus       341 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~  420 (437)
T 3gre_A          341 KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE  420 (437)
T ss_dssp             EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred             eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence            9999999998 9999999998877776531                                   4778999999988  


Q ss_pred             CCEEEEEeCc--EEEEE
Q 010669          454 GSYLAVASAD--IRVYQ  468 (504)
Q Consensus       454 g~~l~~~~~d--i~vw~  468 (504)
                      +.+|++|+.|  |+||+
T Consensus       421 ~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          421 TPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SEEEEEEETTSCEEEEC
T ss_pred             ceEEEEEcCCceEEEeC
Confidence            7899999998  99994

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.1e-31  Score=266.05  Aligned_cols=249  Identities=10%  Similarity=0.070  Sum_probs=194.9

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      ...|.+++|+|||+++|+++.|++|+  |...++   .+.+|...|.+++|+|+|       .++.+.+|+.+..    .
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~----~   78 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQN----G   78 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS----C
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCc----e
Confidence            56899999999999999999999999  654444   457999999999999998       5666666664431    2


Q ss_pred             eEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 010669          303 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK  382 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~  382 (504)
                      ...+ .|...|.+++|+|+|.+|++++.||.|++||..+  .+..+. ....-....+.+++|||||++|++|+.||+|+
T Consensus        79 ~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           79 LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            2222 5578999999999999999999999999999654  344332 11101123699999999999999999999999


Q ss_pred             EEEcCCCce-------eeee----eCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcce---eeeecCCCCCCeeE
Q 010669          383 IWDVKSQAN-------VAKF----DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF---RSFESSDSETPTNS  447 (504)
Q Consensus       383 iwd~~~~~~-------~~~~----~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~---~~~~~~~~~~~v~~  447 (504)
                      |||+..+..       +.++    .+|...|.+++|+|+|  +++++.|+ |++||+..+...   ..+.. .+...|.+
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-~h~~~V~s  231 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-ASRRKITD  231 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC-CCSSCCCC
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc-cccCcEEE
Confidence            999988753       5666    5677899999999999  67777777 999999887742   34532 23578999


Q ss_pred             EEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeEEEE--eecCcc
Q 010669          448 VDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASFLFL--FVLGQT  502 (504)
Q Consensus       448 i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~--~~~g~~  502 (504)
                      ++|+  |++|++++.. |++|++    ..........+|  .+.|.++.|  +++|+.
T Consensus       232 vaFs--g~~LASa~~~tIkLWd~----~~~~~~~~~~gh--~~~V~~va~~~s~d~~~  281 (588)
T 2j04_A          232 LKIV--DYKVVLTCPGYVHKIDL----KNYSISSLKTGS--LENFHIIPLNHEKESTI  281 (588)
T ss_dssp             EEEE--TTEEEEECSSEEEEEET----TTTEEEEEECSC--CSCCCEEEETTCSSCEE
T ss_pred             EEEE--CCEEEEEeCCeEEEEEC----CCCeEEEEEcCC--CceEEEEEeeeCCCCCE
Confidence            9999  6899999866 999998    444442322277  889999999  999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.6e-30  Score=253.68  Aligned_cols=238  Identities=18%  Similarity=0.236  Sum_probs=195.8

Q ss_pred             ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCe
Q 010669          256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNT  333 (504)
Q Consensus       256 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~  333 (504)
                      +.+..+.+|.+.|++++|+|++++|++|+.||.|++||+... .......+.+|...|.+++|+++  +++|++++.||.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            456678899999999999999999999999999999999742 23667788899999999999977  899999999999


Q ss_pred             EEEEECCCCe--EEEEeecCCCCCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCc--eeeeeeCCCCCeEEEEE
Q 010669          334 WCFYDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISF  407 (504)
Q Consensus       334 i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~pd--g~~l~~g~~dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~  407 (504)
                      |++||+.+++  ....+.     .|...|.+++|+|+  +.+|++++.||.|++||++.+.  ....+..|...|.+++|
T Consensus        81 v~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~  155 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHA-----VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW  155 (379)
T ss_dssp             EEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEE
T ss_pred             EEEEEcCCCceeEeeeec-----CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEE
Confidence            9999999987  333333     57789999999999  9999999999999999998873  44566789999999999


Q ss_pred             cC-------------CCcEEEEEeCCc-EEEEEcCCCcce----eeeecCCCCCCeeEEEECCC---CCEEEEEeCc--E
Q 010669          408 SE-------------NGYYLATAAHDG-VKLWDLRKLKNF----RSFESSDSETPTNSVDFDHS---GSYLAVASAD--I  464 (504)
Q Consensus       408 s~-------------~g~~l~s~~~d~-v~vwd~~~~~~~----~~~~~~~~~~~v~~i~~~~~---g~~l~~~~~d--i  464 (504)
                      +|             ++.+|++++.|+ |++||++++...    ..+..  +...|.+++|+|+   +.+|++++.|  +
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~dg~i  233 (379)
T 3jrp_A          156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTC  233 (379)
T ss_dssp             CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred             cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence            99             699999999998 999999876543    33333  4678999999999   8999999988  9


Q ss_pred             EEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          465 RVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       465 ~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ++|++......+ ....+..+.+.+.|++++|+|+|+.
T Consensus       234 ~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~  270 (379)
T 3jrp_A          234 IIWTQDNEQGPW-KKTLLKEEKFPDVLWRASWSLSGNV  270 (379)
T ss_dssp             EEEEESSTTSCC-EEEESSSSCCSSCEEEEEECSSSCC
T ss_pred             EEEeCCCCCccc-eeeeeccccCCCcEEEEEEcCCCCE
Confidence            999995432211 2223333223789999999999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=8.6e-30  Score=278.42  Aligned_cols=244  Identities=11%  Similarity=0.134  Sum_probs=202.2

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      +.+|...|++++|+|++++||+|+.||.|+||+..+.+....+. |...|.+++|+| +++|++++.|++|++||+.++ 
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~-   89 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ-   89 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC-
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC-
Confidence            44788999999999999999999999999999998877766654 788999999999 889999999999999999875 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEee-c-----CCCCCCCCCeEEEEECCC-CCE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVS-D-----AGTDGRPEGYTSAAFHPD-GLI  371 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~-----~~~~~~~~~v~~~~~~pd-g~~  371 (504)
                        .++..+. |.+.|++++|+|+++++++|+.||.|++||++++....... .     ....+|...|.+++|+|+ +..
T Consensus        90 --~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~  166 (902)
T 2oaj_A           90 --KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT  166 (902)
T ss_dssp             --SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred             --cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence              5566664 66889999999999999999999999999999987642110 0     123478889999999995 578


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeCC------------------CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc
Q 010669          372 LGTGTSEALVKIWDVKSQANVAKFDGH------------------VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN  432 (504)
Q Consensus       372 l~~g~~dg~I~iwd~~~~~~~~~~~~~------------------~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~  432 (504)
                      +++|+.||.| +||+++++.+..+..|                  ...|++++|+|+|.+|++++.|+ |++||+++++.
T Consensus       167 l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          167 VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence            9999999999 9999999988887755                  46799999999999999999999 99999999887


Q ss_pred             eee--ee---cC-----------CCCCCeeEEEEC----CCC-CEEEEEeCc-------EEEEEe
Q 010669          433 FRS--FE---SS-----------DSETPTNSVDFD----HSG-SYLAVASAD-------IRVYQV  469 (504)
Q Consensus       433 ~~~--~~---~~-----------~~~~~v~~i~~~----~~g-~~l~~~~~d-------i~vw~~  469 (504)
                      +..  +.   .+           .+...|.+++|+    |++ .+|++|+.+       +.+|++
T Consensus       246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            653  21   11           123479999995    554 566777542       778885

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=1.2e-29  Score=246.33  Aligned_cols=236  Identities=17%  Similarity=0.246  Sum_probs=197.9

Q ss_pred             EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC-CcceeEEeccCCcCeEEEEEcc--CCCEEEEEeCCCeEEE
Q 010669          260 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG-NYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCF  336 (504)
Q Consensus       260 ~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~i~i  336 (504)
                      .+.+|.+.|++++|+|++++|++|+.||.|++||+..+. .......+.+|...|.+++|+|  ++++|++++.||.|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            457899999999999999999999999999999998642 2345677789999999999999  5999999999999999


Q ss_pred             EECCCC---------eEEEEeecCCCCCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCceeeeee---------
Q 010669          337 YDLSSG---------ICLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQANVAKFD---------  396 (504)
Q Consensus       337 wd~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~pd--g~~l~~g~~dg~I~iwd~~~~~~~~~~~---------  396 (504)
                      ||++++         +....+.     .|...|.+++|+|+  +.+|++++.||.|++||+++++.+..+.         
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLN-----DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEEC-----CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             EecCCCcccccccCcceeeeec-----ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            999987         3444443     67789999999999  9999999999999999999887654443         


Q ss_pred             ----CCCCCeEEEEEcCC---CcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC----CEEEEEeCc-
Q 010669          397 ----GHVGAVTAISFSEN---GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG----SYLAVASAD-  463 (504)
Q Consensus       397 ----~~~~~i~~l~~s~~---g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g----~~l~~~~~d-  463 (504)
                          .|...+.+++|+|+   +.+|++++.++ +.+|+...+..........+...|.+++|+|++    .+|++++.| 
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence                57789999999997   89999999998 877777766653333333447899999999998    899999998 


Q ss_pred             -EEEEEeeccC------------------------------------------ccceeEEEccCCCCCCceeEEEEeecC
Q 010669          464 -IRVYQVASVK------------------------------------------ADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       464 -i~vw~~~~~~------------------------------------------~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                       |++|++....                                          ..+..+..+.+|  .+.|++++|+|+|
T Consensus       241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~  318 (351)
T 3f3f_A          241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSWNLTG  318 (351)
T ss_dssp             CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--SSCEEEEEECSSS
T ss_pred             eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--cccEEEEEEcCCC
Confidence             9999995421                                          134788888898  8899999999998


Q ss_pred             cc
Q 010669          501 QT  502 (504)
Q Consensus       501 ~~  502 (504)
                      +.
T Consensus       319 ~~  320 (351)
T 3f3f_A          319 TI  320 (351)
T ss_dssp             CC
T ss_pred             CE
Confidence            64

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=2.1e-30  Score=255.09  Aligned_cols=206  Identities=16%  Similarity=0.158  Sum_probs=170.8

Q ss_pred             CCCCCeEEEEeccCCCEEEEE--eCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATG--GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      .+...+.+++|||||++++++  +.|++|+|||+.+++.+..+. |.+.|.+++|+|+|+++++++.++ +++|+..++.
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~  208 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGS  208 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCC
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCc
Confidence            345668999999999987654  478999999999999988886 778899999999999999998654 5666655532


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC----eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                       .........|...|.+++|+|+++++++++.|+    .+.+||+........... ...+|...|++++|+|||++||+
T Consensus       209 -~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~las  286 (365)
T 4h5i_A          209 -CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGELAVL  286 (365)
T ss_dssp             -EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSCEEEE
T ss_pred             -ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeee-eecCCCCCeEeEEECCCCCceEE
Confidence             122334557889999999999999999999887    688899887654322110 02266788999999999999999


Q ss_pred             EeCCCcEEEEEcCCCceeeee-eCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC
Q 010669          375 GTSEALVKIWDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL  430 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~  430 (504)
                      |+.||.|+|||+++++++..+ .+|...|++++|+|||.+|++|+.|+ |+|||+...
T Consensus       287 gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          287 ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999999875 78999999999999999999999998 999999643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=3.9e-30  Score=250.17  Aligned_cols=230  Identities=17%  Similarity=0.207  Sum_probs=199.2

Q ss_pred             cCCCCCeEEEEeccCCC-EEEEEeCCCcEEEEcC-CCCceEEEccc--CccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          220 KTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDR-PSGQIVTTLSG--HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~-~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ..|...|.+++|+|+++ +|++|+.||.|++||+ .+++. ..+.+  |...|.+++|+| +++|++++.||.|++||+.
T Consensus        53 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~  130 (342)
T 1yfq_A           53 LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH
T ss_pred             eecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc
Confidence            36888999999999999 9999999999999999 77655 77888  999999999999 9999999999999999987


Q ss_pred             C---------CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCCCCCCeEEEEE
Q 010669          296 E---------DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAF  365 (504)
Q Consensus       296 ~---------~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~  365 (504)
                      .         .   .++..+. |...|.+++|+|++  +++++.|+.|++||+++ +.......   ...+...+.+++|
T Consensus       131 ~~~~~~~~~~~---~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~i~~i~~  201 (342)
T 1yfq_A          131 NYGDGVIAVKN---LNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE---ESGLKYQIRDVAL  201 (342)
T ss_dssp             HHTTBCEEEEE---SCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE---ECSCSSCEEEEEE
T ss_pred             ccccccccccC---CeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceee---ecCCCCceeEEEE
Confidence            5         3   3444454 88999999999877  99999999999999998 54322211   1155678999999


Q ss_pred             CC-CCCEEEEEeCCCcEEEEEcCCC------ceeeeeeCCCC---------CeEEEEEcCCCcEEEEEeCCc-EEEEEcC
Q 010669          366 HP-DGLILGTGTSEALVKIWDVKSQ------ANVAKFDGHVG---------AVTAISFSENGYYLATAAHDG-VKLWDLR  428 (504)
Q Consensus       366 ~p-dg~~l~~g~~dg~I~iwd~~~~------~~~~~~~~~~~---------~i~~l~~s~~g~~l~s~~~d~-v~vwd~~  428 (504)
                      +| ++.++++|+.||.|++||++..      +....+..|..         .|++++|+|++.+|++++.|+ |++||+.
T Consensus       202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence            99 9999999999999999999887      77888888755         999999999999999999998 9999999


Q ss_pred             CCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       429 ~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      +++.+..+..+ +...|.+++  |++.+|++++.|
T Consensus       282 ~~~~~~~~~~~-h~~~v~~~~--~~~~~l~s~s~D  313 (342)
T 1yfq_A          282 TRKKIKNFAKF-NEDSVVKIA--CSDNILCLATSD  313 (342)
T ss_dssp             TTEEEEECCCC-SSSEEEEEE--ECSSEEEEEEEC
T ss_pred             cHhHhhhhhcc-cCCCceEec--CCCCeEEEEecC
Confidence            99888777653 156899998  999999999988

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=2.9e-29  Score=246.09  Aligned_cols=241  Identities=10%  Similarity=0.175  Sum_probs=186.4

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEE-EEEeCCCcEEEEeCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~s~dg~i~iwd~~~~~  298 (504)
                      ..|.+.|.+++|+|+|++|++|+.+| +++|+..+++.......  ..+..+++.++++.+ ++++.|++|++||..++ 
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~-   91 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK-   91 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT-
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC-
Confidence            66889999999999999999998775 78999987766555432  348888898888876 56788899999999876 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCC-----------------------------------CEEEE--EeCCCeEEEEECCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATN-----------------------------------KYFVT--ASLDNTWCFYDLSS  341 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~-----------------------------------~~l~s--~s~dg~i~iwd~~~  341 (504)
                        ..+..+. |...|.++.|+++.                                   .++++  |+.||.|++||+.+
T Consensus        92 --~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~  168 (355)
T 3vu4_A           92 --QDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQS  168 (355)
T ss_dssp             --EEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC
T ss_pred             --cEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCC
Confidence              5556654 56688888887642                                   23333  46778888888876


Q ss_pred             CeE----------------EEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEEcCCCceeeeee-C-CCCCe
Q 010669          342 GIC----------------LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL-VKIWDVKSQANVAKFD-G-HVGAV  402 (504)
Q Consensus       342 ~~~----------------~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~-I~iwd~~~~~~~~~~~-~-~~~~i  402 (504)
                      +..                ...+     .+|...|++++|+|+|.+|++|+.||+ |++||+++++.+..+. + |...|
T Consensus       169 ~~~~~~~~~~~~~~~~~p~~~~~-----~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v  243 (355)
T 3vu4_A          169 SGSATTQDQGVQQKAILGKGVLI-----KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADV  243 (355)
T ss_dssp             ------------------CCEEE-----CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCE
T ss_pred             CCccccccccccccccCcccEEE-----EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcE
Confidence            541                2233     378899999999999999999999998 9999999999999998 5 99999


Q ss_pred             EEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeee--------------------ecC-CCCCCeeEEEECCCCCEEEEE
Q 010669          403 TAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF--------------------ESS-DSETPTNSVDFDHSGSYLAVA  460 (504)
Q Consensus       403 ~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~--------------------~~~-~~~~~v~~i~~~~~g~~l~~~  460 (504)
                      ++++|+|+|.+|++++.|+ |++||++........                    ... ........++|+++|++|+++
T Consensus       244 ~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~  323 (355)
T 3vu4_A          244 VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVW  323 (355)
T ss_dssp             EEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEE
Confidence            9999999999999999998 999999765321111                    011 011234679999999999999


Q ss_pred             eCc--EEEEEeecc
Q 010669          461 SAD--IRVYQVASV  472 (504)
Q Consensus       461 ~~d--i~vw~~~~~  472 (504)
                      +.|  +++|++...
T Consensus       324 ~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          324 PHTRMIETFKVVFD  337 (355)
T ss_dssp             TTTTEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEcC
Confidence            988  899998543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.6e-29  Score=253.08  Aligned_cols=237  Identities=21%  Similarity=0.321  Sum_probs=196.7

Q ss_pred             EEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCCC-------CCcceeEEeccCCcCeEEEEEccCCC-EEEEEe
Q 010669          259 TTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSED-------GNYDCKHTLKDHTAEVQAVTVHATNK-YFVTAS  329 (504)
Q Consensus       259 ~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s  329 (504)
                      .....|.+.|++++|+|+ +.+|++++.||.|++||+...       +.......+.+|...|.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            344579999999999996 679999999999999999751       22366777889999999999999988 999999


Q ss_pred             CCCeEEEEECCCCeE----EEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCC---ceeeeeeCCCCC
Q 010669          330 LDNTWCFYDLSSGIC----LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGA  401 (504)
Q Consensus       330 ~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~---~~~~~~~~~~~~  401 (504)
                      .||.|++||+..+..    .....  ...+|...|.+++|+| ++.+|++++.||.|++||++++   +.+..+..|...
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKN--IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSE--EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             CCCeEEEEeCCCCCCCCceeccce--eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            999999999987422    11011  0226778899999999 7889999999999999999987   577788889999


Q ss_pred             eEEEEEcCCCc-EEEEEeCCc-EEEEEcCC-CcceeeeecCCCCCCeeEEEECCCCC-EEEEEeCc--EEEEEeeccCcc
Q 010669          402 VTAISFSENGY-YLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKAD  475 (504)
Q Consensus       402 i~~l~~s~~g~-~l~s~~~d~-v~vwd~~~-~~~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~~~d--i~vw~~~~~~~~  475 (504)
                      |++++|+|++. +|++|+.|+ |++||+++ ...+..+..+  ...|.+++|+|++. +|++++.|  |+||++......
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~  357 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  357 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC--SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence            99999999886 788999998 99999998 4566777655  67999999999995 68888877  999999542211


Q ss_pred             ----------ceeEEEccCCCCCCceeEEEEeecCc
Q 010669          476 ----------WNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       476 ----------~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                                ...+..+.+|  .+.|++++|+|+|+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~  391 (430)
T 2xyi_A          358 QSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEP  391 (430)
T ss_dssp             CCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSST
T ss_pred             cCccccccCCcceEEEcCCC--CCCceEEEECCCCC
Confidence                      3678888888  88999999999987

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=7.2e-29  Score=246.88  Aligned_cols=253  Identities=15%  Similarity=0.200  Sum_probs=201.1

Q ss_pred             cCCCCCeEEEEecc-CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeC---CCEEEEEeCCCcEEEEeCC
Q 010669          220 KTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE---GDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       220 ~~~~~~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~---~~~l~s~s~dg~i~iwd~~  295 (504)
                      ..|...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|++.   +.++++++.||.|++||+.
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            35889999999999 77899999999999999999998888776 7788999999984   4499999999999999998


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCe-EEEEeec----------CCCCCCCCCeEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGI-CLTQVSD----------AGTDGRPEGYTSA  363 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~-~~~~~~~----------~~~~~~~~~v~~~  363 (504)
                      ++   .....+..|...|.+++|+|+++ .|++++.||.|++||++++. ....+..          .....|...|.++
T Consensus       175 ~~---~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          175 SG---SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             SS---CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             Cc---ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            75   56777889999999999999998 58999999999999998765 3333211          0113677899999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC-----CCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669          364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-----GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       364 ~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~  437 (504)
                      +|+|++.+|++++.||.|++||+++++....+..+.     ..+........+..+++++.++ |++||+.+++.+..+.
T Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  331 (408)
T 4a11_B          252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK  331 (408)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence            999999999999999999999999987665543321     1222222223344455555566 9999999999988887


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEc
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF  482 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~  482 (504)
                      .+  ...|.+++|+|++++|++++.|  |++|++    ...+.+...
T Consensus       332 ~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~----~~~~~~~~~  372 (408)
T 4a11_B          332 GH--YKTVDCCVFQSNFQELYSGSRDCNILAWVP----SLYEPVPDD  372 (408)
T ss_dssp             CC--SSCEEEEEEETTTTEEEEEETTSCEEEEEE----CC-------
T ss_pred             cC--CCeEEEEEEcCCCCEEEEECCCCeEEEEeC----CCCCccCCC
Confidence            65  6799999999999999999998  999999    444544443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-30  Score=260.86  Aligned_cols=196  Identities=11%  Similarity=0.064  Sum_probs=165.3

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCcc-----ceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK-----KVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      .|.+.|.+++|||+|.+||+++.||.|++||...  ++..+. |..     .|.+++|||||++|++|+.||+|++||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            5678999999999999999999999999999643  677777 665     49999999999999999999999999998


Q ss_pred             CCCC----cceeEEe----ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEE---EEeecCCCCCCCCCeEEEE
Q 010669          296 EDGN----YDCKHTL----KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL---TQVSDAGTDGRPEGYTSAA  364 (504)
Q Consensus       296 ~~~~----~~~~~~~----~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~  364 (504)
                      ++..    +..+.++    .+|...|.+++|+|+|  +++++.|++|++||+.++...   ..+.    .+|...|.+++
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~----~~h~~~V~sva  233 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ----NASRRKITDLK  233 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE----CCCSSCCCCEE
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec----ccccCcEEEEE
Confidence            7521    1135665    6788899999999999  888999999999999887732   3332    15667899999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEE--cCCCcEEEEEeCCcEEEEEcC
Q 010669          365 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISF--SENGYYLATAAHDGVKLWDLR  428 (504)
Q Consensus       365 ~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~--s~~g~~l~s~~~d~v~vwd~~  428 (504)
                      |+  |..+++++ +|.|++||+.+++......+|...|..+.|  +|++..|++++++|.++|...
T Consensus       234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d  296 (588)
T 2j04_A          234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLED  296 (588)
T ss_dssp             EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESS
T ss_pred             EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeec
Confidence            99  68888887 699999999887774444479999999999  999999999998877999875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=3.1e-28  Score=245.03  Aligned_cols=259  Identities=12%  Similarity=0.074  Sum_probs=218.7

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE-----EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT-----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~-----~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+.+++|+|++.++++++.++.|++||+.+++...     .+.+|.+.|.+++|++++.++++++.|+.|++||+.++ 
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~-  201 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL-  201 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC-
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc-
Confidence            346689999977888888889999999999998887     45588899999999999999999999999999999875 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-  376 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-  376 (504)
                        .....+..|...+.+++|+|++++++++ +.|+.|++||+++++....+..      ...+.+++|+|+|+++++++ 
T Consensus       202 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          202 --AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK------IGLPRGLLLSKDGKELYIAQF  273 (433)
T ss_dssp             --CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC------CSEEEEEEECTTSSEEEEEEE
T ss_pred             --eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC------CCCceEEEEcCCCCEEEEEEC
Confidence              5667777889999999999999988554 4799999999999988776642      24589999999999999887 


Q ss_pred             -------CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEE-EEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeE
Q 010669          377 -------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL-ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS  447 (504)
Q Consensus       377 -------~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~  447 (504)
                             .||.|++||+++++.+..+. |...+.+++|+|+|.++ ++++.++ |++||+.+++....+..   ...+.+
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~~  349 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV---FDKPNT  349 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEE
T ss_pred             CCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC---CCCCCe
Confidence                   58899999999988776653 56689999999999755 5556777 99999999888777753   467999


Q ss_pred             EEECCCCCEEEEEeC---------------c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          448 VDFDHSGSYLAVASA---------------D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       448 i~~~~~g~~l~~~~~---------------d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ++|+|+|++|++++.               |  +++||+    .+++.+..+..+   ..+.+++|+|+|+.
T Consensus       350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~----~~~~~~~~~~~~---~~~~~~~~s~dg~~  414 (433)
T 3bws_A          350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT----TTDTVKEFWEAG---NQPTGLDVSPDNRY  414 (433)
T ss_dssp             EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET----TTTEEEEEEECS---SSEEEEEECTTSCE
T ss_pred             EEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC----CCCcEEEEecCC---CCCceEEEcCCCCE
Confidence            999999999988876               3  889997    667888888763   57899999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=8e-29  Score=242.83  Aligned_cols=234  Identities=21%  Similarity=0.276  Sum_probs=196.6

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEE--eeCCCEEEEEeCCCcEEEEeCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKF--VTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~--s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ....|...|.+++|+|++++|++|+.||.|++||+.+++.+. +.+|...|++++|  ++++.+|++++.||.|++||+.
T Consensus        81 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  159 (368)
T 3mmy_A           81 AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR  159 (368)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred             EeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence            456789999999999999999999999999999999888766 5569999999999  7899999999999999999998


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE----
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI----  371 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~----  371 (504)
                      ++   .....+..|. .+.++.+.  +..+++++.++.+.+||++...........   .+...+.++.+.+++..    
T Consensus       160 ~~---~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  230 (368)
T 3mmy_A          160 SS---NPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIES---PLKHQHRCVAIFKDKQNKPTG  230 (368)
T ss_dssp             CS---SCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCC---SCSSCEEEEEEEECTTSCEEE
T ss_pred             CC---cEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccc---cccCCCceEEEcccCCCCCCe
Confidence            76   5556666553 56666665  568899999999999999987655444322   33445666666665543    


Q ss_pred             EEEEeCCCcEEEEEcCCC---ceeeeeeCCCC------------CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceee
Q 010669          372 LGTGTSEALVKIWDVKSQ---ANVAKFDGHVG------------AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS  435 (504)
Q Consensus       372 l~~g~~dg~I~iwd~~~~---~~~~~~~~~~~------------~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~  435 (504)
                      +++|+.||.|++||++..   ..+..+.+|..            .|++++|+|++.+|++++.|+ |++||+++++.+..
T Consensus       231 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  310 (368)
T 3mmy_A          231 FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT  310 (368)
T ss_dssp             EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence            999999999999999887   56777777765            799999999999999999999 99999999998888


Q ss_pred             eecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          436 FESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       436 ~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      +..+  ...|.+++|+|+|.+|++++.|
T Consensus       311 ~~~~--~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          311 SEQL--DQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             CCCC--SSCEEEEEECTTSSCEEEEECC
T ss_pred             ecCC--CCCceEEEECCCCCeEEEEecc
Confidence            8765  6799999999999999999886

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=5.6e-27  Score=232.52  Aligned_cols=243  Identities=14%  Similarity=0.133  Sum_probs=202.7

Q ss_pred             CCeEEEEeccCCCEE-EEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCCcc
Q 010669          224 PGIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ..+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|+ +++.++.|++||+.++   .
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~---~  107 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN---T  107 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---E
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC---e
Confidence            458999999999976 677789999999999999988887665 899999999999775 4556799999999875   5


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE-EEEeCCC
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGTSEA  379 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l-~~g~~dg  379 (504)
                      ....+..| ..+.+++|+|+++++ ++++.|+.|++||+.+++....+..      ...+.+++|+|+|+.+ ++++.++
T Consensus       108 ~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~  180 (391)
T 1l0q_A          108 VAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV------GRSPKGIAVTPDGTKVYVANFDSM  180 (391)
T ss_dssp             EEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------CSSEEEEEECTTSSEEEEEETTTT
T ss_pred             EEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec------CCCcceEEECCCCCEEEEEeCCCC
Confidence            55555544 568999999999977 6788899999999999988877752      2457999999999877 5778899


Q ss_pred             cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEe---CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA---HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~---~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      .|++||+++++.+..+. +...+.+++|+|+|.+|++++   .++ |++||+.+++.+..+..+   ..+.+++|+|+|+
T Consensus       181 ~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~  256 (391)
T 1l0q_A          181 SISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVTPDGK  256 (391)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC---SSEEEEEECTTSS
T ss_pred             EEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC---CCccEEEEccCCC
Confidence            99999999998887776 456899999999999998887   456 999999999888877764   4588999999999


Q ss_pred             EEE-EEeCc--EEEEEeeccCccceeEEEccCC
Q 010669          456 YLA-VASAD--IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       456 ~l~-~~~~d--i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                      +|+ +++.+  +++||+    .+++.+..+..|
T Consensus       257 ~l~~s~~~d~~v~v~d~----~~~~~~~~~~~~  285 (391)
T 1l0q_A          257 KVYVALSFXNTVSVIDT----ATNTITATMAVG  285 (391)
T ss_dssp             EEEEEETTTTEEEEEET----TTTEEEEEEECS
T ss_pred             EEEEEcCCCCEEEEEEC----CCCcEEEEEECC
Confidence            885 44555  999998    667888877766

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=8.9e-28  Score=226.81  Aligned_cols=236  Identities=16%  Similarity=0.187  Sum_probs=177.9

Q ss_pred             eEEEEeccCCC---EEEEEeCCCcEEEEcCCCC---ceEEEcccCcc-------------------------ceeEEEEe
Q 010669          226 IVSLDIHYSKD---VIATGGVDTNAVLFDRPSG---QIVTTLSGHSK-------------------------KVTSVKFV  274 (504)
Q Consensus       226 I~~~~~s~~~~---~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~-------------------------~v~~l~~s  274 (504)
                      +.++-|-..|-   .+++++. ..|++|+..++   +.+.++..|..                         .|..++|+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            55566655443   6777764 58999999888   77777777664                         45677778


Q ss_pred             eC----CCEEEEEeC--------------------CCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc---CCCEEEE
Q 010669          275 TE----GDLFLTGSA--------------------DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA---TNKYFVT  327 (504)
Q Consensus       275 ~~----~~~l~s~s~--------------------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p---~~~~l~s  327 (504)
                      |+    +.++++++.                    |+.|++|++...+  +.+..+.+|...+..++|+|   ++.+|++
T Consensus       121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--~~~~s~~~~~~~v~~l~fs~~~g~~~~LaS  198 (356)
T 2w18_A          121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--GGKENQFLMPPEETILTFAEVQGMQEALLG  198 (356)
T ss_dssp             -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--CEEEEEEECCCSSCEEEEEEEETSTTEEEE
T ss_pred             CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--ceeeeeccCCCceeeEEeeccCCCCceEEE
Confidence            88    777777553                    8888899885533  56666778888888899988   6789999


Q ss_pred             EeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE------------EEEeCCCcEEEEEcCCCceeeee
Q 010669          328 ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL------------GTGTSEALVKIWDVKSQANVAKF  395 (504)
Q Consensus       328 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l------------~~g~~dg~I~iwd~~~~~~~~~~  395 (504)
                      ++.|++|++||+.+++.+..+...  ..+...+.+++|+|+|.++            ++|+.|++|++||..+++.+..+
T Consensus       199 gS~D~TIkIWDl~TGk~l~tL~g~--~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~  276 (356)
T 2w18_A          199 TTIMNNIVIWNLKTGQLLKKMHID--DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM  276 (356)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECC--C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE
T ss_pred             ecCCCcEEEEECCCCcEEEEEcCC--CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE
Confidence            999999999999999999988632  1223468889999999886            56788999999999999887665


Q ss_pred             -----eCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEE
Q 010669          396 -----DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVY  467 (504)
Q Consensus       396 -----~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw  467 (504)
                           .+|...+.+..+  ++.++++++.|+ |+|||+.+++++.++..+. ...+..++|+|+|++|++|+.|  |+||
T Consensus       277 ~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~-~~vvs~vafSPDG~~LaSGS~D~TIklW  353 (356)
T 2w18_A          277 LYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVS-DQHWSFVKWSGTDSHLLAGQKDGNIFVY  353 (356)
T ss_dssp             EECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC---CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             EeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCC-CCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence                 367666555555  488999999998 9999999999999987652 2334568999999999999999  9999


Q ss_pred             Ee
Q 010669          468 QV  469 (504)
Q Consensus       468 ~~  469 (504)
                      ++
T Consensus       354 d~  355 (356)
T 2w18_A          354 HY  355 (356)
T ss_dssp             EE
T ss_pred             cC
Confidence            96

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-28  Score=264.96  Aligned_cols=237  Identities=18%  Similarity=0.237  Sum_probs=192.8

Q ss_pred             EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC--CCEEEEEeCCCeEE
Q 010669          258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWC  335 (504)
Q Consensus       258 ~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~i~  335 (504)
                      +..+.+|.+.|++++|+|++++|++|+.||+|++||+..+ .......+.+|.+.|.+++|+|+  +++|++|+.||.|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            3467899999999999999999999999999999998742 33677788899999999999988  99999999999999


Q ss_pred             EEECCCCeEEEEeecCCCCCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcC--
Q 010669          336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSE--  409 (504)
Q Consensus       336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd--g~~l~~g~~dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~--  409 (504)
                      +||+.++.......   ..+|...|++++|+|+  +.++++|+.||.|++||++++.  ....+.+|...|.+++|+|  
T Consensus        81 vwd~~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           81 IWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             EEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred             EEECCCCccccccc---ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence            99999987322222   1267789999999999  9999999999999999998873  4456678999999999999  


Q ss_pred             -----------CCcEEEEEeCCc-EEEEEcCCCcc----eeeeecCCCCCCeeEEEECCC---CCEEEEEeCc--EEEEE
Q 010669          410 -----------NGYYLATAAHDG-VKLWDLRKLKN----FRSFESSDSETPTNSVDFDHS---GSYLAVASAD--IRVYQ  468 (504)
Q Consensus       410 -----------~g~~l~s~~~d~-v~vwd~~~~~~----~~~~~~~~~~~~v~~i~~~~~---g~~l~~~~~d--i~vw~  468 (504)
                                 ++.+|++|+.|+ |++||++++..    ...+..  |...|.+++|+|+   +.+|++++.|  |++|+
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                       589999999998 99999988743    334443  3789999999999   8999999998  99999


Q ss_pred             eeccCccce-eEEEccCCCCCCceeEEEEeecCcc
Q 010669          469 VASVKADWN-CIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       469 ~~~~~~~~~-~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +......+. .+.....|  .+.|++++|+|+|+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~  268 (753)
T 3jro_A          236 QDNEQGPWKKTLLKEEKF--PDVLWRASWSLSGNV  268 (753)
T ss_dssp             ESSSSSCCBCCBSSSSCC--SSCCCCEEECTTTCC
T ss_pred             CCCCCCcceeEEeccCCC--CCceEEEEEcCCCCE
Confidence            955322111 33333445  789999999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=6.7e-27  Score=231.93  Aligned_cols=245  Identities=13%  Similarity=0.132  Sum_probs=204.7

Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeE
Q 010669          236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ  314 (504)
Q Consensus       236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  314 (504)
                      .++++++.|+.|++||+.+++.+..+..|.. +.+++|+|+++++ ++++.|+.|++||+.++   +....+..+. .+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~~~-~v~   77 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQ   77 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEEEECCC-Ccc
Confidence            4678899999999999999999998887754 8999999999976 67779999999999875   5666665554 899


Q ss_pred             EEEEccCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCcee
Q 010669          315 AVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGTSEALVKIWDVKSQANV  392 (504)
Q Consensus       315 ~l~~~p~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l-~~g~~dg~I~iwd~~~~~~~  392 (504)
                      +++|+|++++++++ +.++.|++||+.+++....+..      ...+.+++|+|+|+.+ ++++.++.|++||+++++.+
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            99999999987654 5679999999999988877652      2468999999999977 67888999999999999988


Q ss_pred             eeeeCCCCCeEEEEEcCCCcEE-EEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEe---Cc--EE
Q 010669          393 AKFDGHVGAVTAISFSENGYYL-ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS---AD--IR  465 (504)
Q Consensus       393 ~~~~~~~~~i~~l~~s~~g~~l-~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~---~d--i~  465 (504)
                      ..+..+ ..+.+++|+|+|.+| ++++.++ |++||+++++....+..   ...+.+++|+|+|++|++++   .+  ++
T Consensus       152 ~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~  227 (391)
T 1l0q_A          152 NTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVS  227 (391)
T ss_dssp             EEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred             EEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEE
Confidence            888765 467999999999887 5566667 99999999888777764   35789999999999999887   34  99


Q ss_pred             EEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          466 VYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       466 vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +||+    .+++.+..+..|   ..+.++.|+|+|+.
T Consensus       228 ~~d~----~~~~~~~~~~~~---~~~~~~~~s~dg~~  257 (391)
T 1l0q_A          228 MIDT----GTNKITARIPVG---PDPAGIAVTPDGKK  257 (391)
T ss_dssp             EEET----TTTEEEEEEECC---SSEEEEEECTTSSE
T ss_pred             EEEC----CCCeEEEEEecC---CCccEEEEccCCCE
Confidence            9998    667788888776   35789999999863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.6e-28  Score=237.06  Aligned_cols=229  Identities=11%  Similarity=0.121  Sum_probs=178.8

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCC---------CCceEEEcc-cCccceeEEEEee--CCCEEEEEeCCCcEEE
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRP---------SGQIVTTLS-GHSKKVTSVKFVT--EGDLFLTGSADKTVRV  291 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~---------~~~~~~~~~-~h~~~v~~l~~s~--~~~~l~s~s~dg~i~i  291 (504)
                      ..|.++.|+|+   +++|+.|++|++|+..         +++.+..+. +|.+.|.+++|+|  +++++++|+.||+|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            45667778887   9999999999999655         455444443 6778999999999  9999999999999999


Q ss_pred             EeCCCCCCcceeEEe-ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEE-EEeecCCCCCCCCCeEEEEECCCC
Q 010669          292 WQGSEDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL-TQVSDAGTDGRPEGYTSAAFHPDG  369 (504)
Q Consensus       292 wd~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~pdg  369 (504)
                      ||+.++   ...... ..|...|.+++|+|++.+|++|+.||.|++||+++++.. ..+..    +|...|++++|+|+|
T Consensus       154 wd~~~~---~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~----~h~~~v~~l~fs~~g  226 (343)
T 3lrv_A          154 QSYEDD---SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV----DEEAKIKEVKFADNG  226 (343)
T ss_dssp             EESSSS---CEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC----CTTSCEEEEEECTTS
T ss_pred             EECCCC---cEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec----cCCCCEEEEEEeCCC
Confidence            999875   344444 345668999999999999999999999999999998876 55531    378899999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeC---CCCCeE--EEEEcCCCcEEEEEeC-Cc-EEEEEcCCCcceeeeecCCCC
Q 010669          370 LILGTGTSEALVKIWDVKSQANVAKFDG---HVGAVT--AISFSENGYYLATAAH-DG-VKLWDLRKLKNFRSFESSDSE  442 (504)
Q Consensus       370 ~~l~~g~~dg~I~iwd~~~~~~~~~~~~---~~~~i~--~l~~s~~g~~l~s~~~-d~-v~vwd~~~~~~~~~~~~~~~~  442 (504)
                      .+|++++ ++.|++||+++++.+..+..   |...+.  +++|+|+|.+|++++. ++ |++|++.+.......      
T Consensus       227 ~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------  299 (343)
T 3lrv_A          227 YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------  299 (343)
T ss_dssp             SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------
T ss_pred             CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------
Confidence            9999999 55999999999877665543   434444  6999999999999887 76 999999765543322      


Q ss_pred             CCeeEEEECC---CCCEEEEEeCc--EEEEEe
Q 010669          443 TPTNSVDFDH---SGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       443 ~~v~~i~~~~---~g~~l~~~~~d--i~vw~~  469 (504)
                      .++..+.|.+   ++..+++++.|  +.++-.
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          300 DEESALCLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred             cCceeEecCccccccceeEEEecCCceEEEEe
Confidence            3567788888   88888888877  655543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.4e-28  Score=244.67  Aligned_cols=221  Identities=12%  Similarity=0.078  Sum_probs=160.5

Q ss_pred             EEeeCCCEEEEEeCCCcEEEEeCCCCCC--cceeEEeccCCcCeEEEEEcc--------CCCEEEEEeCCCeEEEEECCC
Q 010669          272 KFVTEGDLFLTGSADKTVRVWQGSEDGN--YDCKHTLKDHTAEVQAVTVHA--------TNKYFVTASLDNTWCFYDLSS  341 (504)
Q Consensus       272 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~p--------~~~~l~s~s~dg~i~iwd~~~  341 (504)
                      .+.+++.+|++|+.|++|++||...+..  ......+.+|.+.|++++|+|        ++++|++|+.|++|++||+++
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            3345667899999999999999887521  122344679999999999998        789999999999999999998


Q ss_pred             CeEEEEeecCCCCCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEEcCCCceeee-------------------------e
Q 010669          342 GICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQANVAK-------------------------F  395 (504)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~v~~~~~~pdg-~~l~~g~~dg~I~iwd~~~~~~~~~-------------------------~  395 (504)
                      +.......     .|...+.+++|+|++ .+|++|+.||.|++||+++++....                         .
T Consensus       176 ~~~~~~~~-----~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  250 (393)
T 4gq1_A          176 EGPILAGY-----PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS  250 (393)
T ss_dssp             TEEEEEEE-----ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred             Cceeeeec-----CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence            88776665     556789999999987 5899999999999999988754322                         1


Q ss_pred             eCCCCCeEEEEEc-CCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCC----------------CCCeeEEEECC--CCC
Q 010669          396 DGHVGAVTAISFS-ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS----------------ETPTNSVDFDH--SGS  455 (504)
Q Consensus       396 ~~~~~~i~~l~~s-~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~----------------~~~v~~i~~~~--~g~  455 (504)
                      .+|...+.++.|+ ++|..|++++.|+ +++||+..++....+..+..                ........|+|  ++.
T Consensus       251 ~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (393)
T 4gq1_A          251 SGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDY  330 (393)
T ss_dssp             -CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTE
T ss_pred             ccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCE
Confidence            3567789999987 7999999999998 99999987765544432210                11112233333  334


Q ss_pred             EEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCccc
Q 010669          456 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       456 ~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~  503 (504)
                      ++++|+.|  |++||+    .++..+..+.+|  ...|.+++|+|+|+..
T Consensus       331 ~~~sgs~Dg~V~lwd~----~~~~~~~~~~~~--~~~V~svafspdG~~L  374 (393)
T 4gq1_A          331 FATAHSQHGLIQLINT----YEKDSNSIPIQL--GMPIVDFCWHQDGSHL  374 (393)
T ss_dssp             EEEEETTTTEEEEEET----TCTTCCEEEEEC--SSCEEEEEECTTSSEE
T ss_pred             EEEEECCCCEEEEEEC----CCCcEEEEecCC--CCcEEEEEEcCCCCEE
Confidence            56667777  999998    556667777777  7799999999999753

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=7.7e-28  Score=227.23  Aligned_cols=201  Identities=12%  Similarity=0.092  Sum_probs=158.6

Q ss_pred             CCCCeEEEEeccC----CCEEEEEeC--------------------CCcEEEEcC-CCCceEEEcccCccceeEEEEee-
Q 010669          222 SKPGIVSLDIHYS----KDVIATGGV--------------------DTNAVLFDR-PSGQIVTTLSGHSKKVTSVKFVT-  275 (504)
Q Consensus       222 ~~~~I~~~~~s~~----~~~l~sg~~--------------------dg~i~vwd~-~~~~~~~~~~~h~~~v~~l~~s~-  275 (504)
                      +...|.+++|+|+    +.++++++.                    |+.|++|++ .+++.+..+.+|...++.++|++ 
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~  189 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV  189 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence            3447889999999    777777653                    888999998 55888888888999999999998 


Q ss_pred             --CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCC---cCeEEEEEccCCCEE------------EEEeCCCeEEEEE
Q 010669          276 --EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT---AEVQAVTVHATNKYF------------VTASLDNTWCFYD  338 (504)
Q Consensus       276 --~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~l------------~s~s~dg~i~iwd  338 (504)
                        ++.+|++|+.|++|+|||+.++   ++++++.+|.   ..+.+++|+|+|.++            ++|+.|++|++||
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd  266 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN  266 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred             CCCCceEEEecCCCcEEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence              6789999999999999999987   6778887643   467888999999876            5678899999999


Q ss_pred             CCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeE-EEEEcCCCcEEEEE
Q 010669          339 LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVT-AISFSENGYYLATA  417 (504)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~-~l~~s~~g~~l~s~  417 (504)
                      ..+++.+..+......+|...+.+..++  +.++++|+.||+|+|||+.+++.+.++.+|...+. +++|+|||.+|++|
T Consensus       267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSG  344 (356)
T 2w18_A          267 PKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAG  344 (356)
T ss_dssp             TTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEE
T ss_pred             CCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEE
Confidence            9999887665321122454444444444  88999999999999999999999999999887655 68999999999999


Q ss_pred             eCCc-EEEEEc
Q 010669          418 AHDG-VKLWDL  427 (504)
Q Consensus       418 ~~d~-v~vwd~  427 (504)
                      +.|+ |+|||+
T Consensus       345 S~D~TIklWd~  355 (356)
T 2w18_A          345 QKDGNIFVYHY  355 (356)
T ss_dssp             CTTSCEEEEEE
T ss_pred             ECCCcEEEecC
Confidence            9998 999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.4e-26  Score=232.94  Aligned_cols=236  Identities=14%  Similarity=0.139  Sum_probs=203.2

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEEeCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDG  298 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~~~~~  298 (504)
                      ..|...|.+++|++++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++.++ +++.|+.|++||+.++ 
T Consensus       166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-  244 (433)
T 3bws_A          166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-  244 (433)
T ss_dssp             HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT-
T ss_pred             cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC-
Confidence            46788999999999999999999999999999999999999989999999999999999875 5558999999999875 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEe--------CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTAS--------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~  370 (504)
                        .....+..+ ..+.+++|+|+++++++++        .||.|++||+.+++....+.      +...+.+++|+|+++
T Consensus       245 --~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~g~  315 (433)
T 3bws_A          245 --LEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG------PPGNKRHIVSGNTEN  315 (433)
T ss_dssp             --EEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE------EEECEEEEEECSSTT
T ss_pred             --cEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc------CCCCcceEEECCCCC
Confidence              555666544 5599999999999999988        58899999999998776653      234688999999997


Q ss_pred             -EEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeC---------------Cc-EEEEEcCCCcce
Q 010669          371 -ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH---------------DG-VKLWDLRKLKNF  433 (504)
Q Consensus       371 -~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~---------------d~-v~vwd~~~~~~~  433 (504)
                       ++++++.++.|++||+.+++.+..+. +...+.+++|+|+|.+|++++.               |+ |++||+.+++.+
T Consensus       316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~  394 (433)
T 3bws_A          316 KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK  394 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred             EEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence             45667899999999999988887776 6678999999999998888876               45 999999999888


Q ss_pred             eeeecCCCCCCeeEEEECCCCCEEEEEeC-c--EEEEEe
Q 010669          434 RSFESSDSETPTNSVDFDHSGSYLAVASA-D--IRVYQV  469 (504)
Q Consensus       434 ~~~~~~~~~~~v~~i~~~~~g~~l~~~~~-d--i~vw~~  469 (504)
                      ..+..   ...+.+++|+|+|++|++++. |  +++|++
T Consensus       395 ~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          395 EFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             EEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             EEecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence            87765   357899999999999998875 5  999998

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=1.1e-25  Score=220.56  Aligned_cols=211  Identities=12%  Similarity=0.162  Sum_probs=158.1

Q ss_pred             EEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEE-EE
Q 010669          249 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYF-VT  327 (504)
Q Consensus       249 vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l-~s  327 (504)
                      +|++.+.+.+..+..|...|++++|+|+|++|++|+.+| +++||....   ......  +...+..+.+.++++.+ ++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~   76 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV---AHIMSQ--EMRHLSKVRMLHRTNYVAFV   76 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE---EEEEEE--ECSCCCEEEECTTSSEEEEE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc---ceeeee--ecCCeEEEEEcCCCCEEEEE
Confidence            466666777777889999999999999999999988775 789998753   333322  22347788888888877 56


Q ss_pred             EeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC-----------------------------------CEE
Q 010669          328 ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-----------------------------------LIL  372 (504)
Q Consensus       328 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg-----------------------------------~~l  372 (504)
                      ++.|++|++||+.+++.+..+.      +...|.+++|+++.                                   .++
T Consensus        77 ~~~d~~v~iWd~~~~~~~~~~~------~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~l  150 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVSRIK------VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLL  150 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEEEEE------CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEE
T ss_pred             ECCccEEEEEECCCCcEEEEEE------CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEE
Confidence            7788999999999999888774      23467777777643                                   234


Q ss_pred             EE--EeCCCcEEEEEcCCCc----------------eeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCcc
Q 010669          373 GT--GTSEALVKIWDVKSQA----------------NVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKN  432 (504)
Q Consensus       373 ~~--g~~dg~I~iwd~~~~~----------------~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~~  432 (504)
                      ++  |+.||.|++||++++.                .+..+.+|.+.|++++|+|+|.+|++|+.|+  |++||+++++.
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            44  5788999999998765                2678899999999999999999999999996  99999999999


Q ss_pred             eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeec
Q 010669          433 FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       433 ~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~  471 (504)
                      +..+....+...|.+++|+|+|++|++++.|  ++||++..
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence            9888732236899999999999999999998  99999854

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=3.1e-24  Score=214.66  Aligned_cols=242  Identities=13%  Similarity=0.113  Sum_probs=190.8

Q ss_pred             CCEEEEEeCC------CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC---cEEEEeCCCCCCcceeEE
Q 010669          235 KDVIATGGVD------TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK---TVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       235 ~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~  305 (504)
                      +..++.++.+      +.|++||+. +.....+.+|...|.+++|+|+|++|++++.++   .|++||+.++   .. ..
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg---~~-~~  217 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AV-RQ  217 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---CE-EE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---cE-EE
Confidence            5555555543      799999997 445677778999999999999999999999885   9999999875   33 34


Q ss_pred             eccCCcCeEEEEEccCCCEEE-EEeCCCe--EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC--
Q 010669          306 LKDHTAEVQAVTVHATNKYFV-TASLDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--  379 (504)
Q Consensus       306 ~~~h~~~v~~l~~~p~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg--  379 (504)
                      +..|...+.+++|+|+|++|+ +++.|+.  |++||+.+++.. .+.     .+...+.+++|+|||+.|++++. +|  
T Consensus       218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~-----~~~~~~~~~~~spdg~~l~~~s~~~g~~  291 (415)
T 2hqs_A          218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT-----DGRSNNTEPTWFPDSQNLAFTSDQAGRP  291 (415)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC-----CCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc-----CCCCcccceEECCCCCEEEEEECCCCCc
Confidence            567888999999999999887 6666654  999999988753 332     45568999999999998888876 44  


Q ss_pred             cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      .|++||+.+++. ..+..+...+.+++|+|+|++|++++.+   . |++||+.+++.. .+..+   ..+.+++|+|+|+
T Consensus       292 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~---~~~~~~~~spdg~  366 (415)
T 2hqs_A          292 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST---FLDETPSLAPNGT  366 (415)
T ss_dssp             EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS---SSCEEEEECTTSS
T ss_pred             EEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC---CCcCCeEEcCCCC
Confidence            688889887764 3445566789999999999999988764   3 999999987763 33332   3789999999999


Q ss_pred             EEEEEeCc-----EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          456 YLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       456 ~l~~~~~d-----i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      +|++++.+     +.+|++     .+.....+.+|  .+.|.+++|+|.
T Consensus       367 ~l~~~s~~~~~~~l~~~d~-----~g~~~~~l~~~--~~~v~~~~~~~~  408 (415)
T 2hqs_A          367 MVIYSSSQGMGSVLNLVST-----DGRFKARLPAT--DGQVKFPAWSPY  408 (415)
T ss_dssp             EEEEEEEETTEEEEEEEET-----TSCCEEECCCS--SSEEEEEEECCC
T ss_pred             EEEEEEcCCCccEEEEEEC-----CCCcEEEeeCC--CCCCcCCccccc
Confidence            99988765     555564     35667888888  889999999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.5e-24  Score=216.93  Aligned_cols=257  Identities=12%  Similarity=0.106  Sum_probs=199.0

Q ss_pred             CCeEEEEeccCCC-EEEEEe----CCC----cEEEEcC--CCCceE--EEcccCccceeEEEEee--------------C
Q 010669          224 PGIVSLDIHYSKD-VIATGG----VDT----NAVLFDR--PSGQIV--TTLSGHSKKVTSVKFVT--------------E  276 (504)
Q Consensus       224 ~~I~~~~~s~~~~-~l~sg~----~dg----~i~vwd~--~~~~~~--~~~~~h~~~v~~l~~s~--------------~  276 (504)
                      ..+...+|++.|. ++++|+    .+|    .+++||+  .+++.+  ..+.+|...+..+++++              .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            3566778888775 666776    467    8999999  888877  45888988888877764              1


Q ss_pred             CCEEEEEeCC------CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC---eEEEEECCCCeEEEE
Q 010669          277 GDLFLTGSAD------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN---TWCFYDLSSGICLTQ  347 (504)
Q Consensus       277 ~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg---~i~iwd~~~~~~~~~  347 (504)
                      +..++.++.+      +.|++||+..    .....+..|...+.+++|+|+|++|++++.++   .|++||+.+++... 
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g----~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-  217 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDG----YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-  217 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTS----CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCC----CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-
Confidence            5556655543      7999999975    34566778899999999999999999999885   99999999988754 


Q ss_pred             eecCCCCCCCCCeEEEEECCCCCEEE-EEeCCCc--EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c--
Q 010669          348 VSDAGTDGRPEGYTSAAFHPDGLILG-TGTSEAL--VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G--  421 (504)
Q Consensus       348 ~~~~~~~~~~~~v~~~~~~pdg~~l~-~g~~dg~--I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~--  421 (504)
                      +.     .+...+.+++|+|||+.|+ +++.+|.  |++||+.+++. ..+..|...+.+++|+|||++|++++.+ +  
T Consensus       218 l~-----~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~  291 (415)
T 2hqs_A          218 VA-----SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP  291 (415)
T ss_dssp             EE-----CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             ee-----cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence            32     3456799999999999887 6666554  99999988765 5666788899999999999999888763 3  


Q ss_pred             -EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-----EEEEEeeccCccceeEEEccCCCCCCceeEEE
Q 010669          422 -VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGTGAASFLF  495 (504)
Q Consensus       422 -v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-----i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~  495 (504)
                       |++||+.+++. ..+..+  ...+.+++|+|+|++|++++.+     |.+|++    .+++. ..+..|  . .+.++.
T Consensus       292 ~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~----~~~~~-~~l~~~--~-~~~~~~  360 (415)
T 2hqs_A          292 QVYKVNINGGAP-QRITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL----ATGGV-QVLSST--F-LDETPS  360 (415)
T ss_dssp             EEEEEETTSSCC-EECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEEEET----TTCCE-EECCCS--S-SCEEEE
T ss_pred             EEEEEECCCCCE-EEEecC--CCcccCeEECCCCCEEEEEECcCCceEEEEEEC----CCCCE-EEecCC--C-CcCCeE
Confidence             78889987764 333332  4578899999999999988752     888887    33443 456565  3 789999


Q ss_pred             EeecCcc
Q 010669          496 LFVLGQT  502 (504)
Q Consensus       496 ~~~~g~~  502 (504)
                      |+|+|+.
T Consensus       361 ~spdg~~  367 (415)
T 2hqs_A          361 LAPNGTM  367 (415)
T ss_dssp             ECTTSSE
T ss_pred             EcCCCCE
Confidence            9999974

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=4.5e-23  Score=201.09  Aligned_cols=260  Identities=12%  Similarity=0.081  Sum_probs=207.9

Q ss_pred             CCCeEEEEeccCCCEEEEEeC-------CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEEeC
Q 010669          223 KPGIVSLDIHYSKDVIATGGV-------DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQG  294 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~-------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~  294 (504)
                      ...+..++|+|+++++++++.       ++.|.+||..+++.+..+... ..+..++|+|++++++ ++..++.|.+||.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            346789999999998888774       568999999999988887643 4578899999999554 5556799999999


Q ss_pred             CCCCCcceeEEeccCCc---------CeEEEEEccCCCEEEEEe--CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEE
Q 010669          295 SEDGNYDCKHTLKDHTA---------EVQAVTVHATNKYFVTAS--LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA  363 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~---------~v~~l~~~p~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  363 (504)
                      .++   +....+..+..         .+.++.|+|+++++++++  .++.|.+||+.+++....+..     +...+.++
T Consensus       119 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~  190 (353)
T 3vgz_A          119 KTG---EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-----TGKMSTGL  190 (353)
T ss_dssp             TTC---CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-----CCTTCCCC
T ss_pred             CCC---eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-----CCCccceE
Confidence            875   44455544332         278899999999887776  478999999999988877641     22347889


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC----CCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeee
Q 010669          364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG----HVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       364 ~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~  437 (504)
                      +|+|+|+.+++++.++.|.+||+.+++.+..+..    +...+..++|+|+|.++++++.+ + |.+||+.+++.+..+.
T Consensus       191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            9999999999999999999999999988877654    45578899999999988777765 5 9999999998888777


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeC-c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ...    ...++|+|+|+++++++. +  +.+||.    .+++.+..+..   ...+.+++|+++|+.
T Consensus       271 ~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~----~~~~~~~~~~~---~~~~~~~~~s~dg~~  327 (353)
T 3vgz_A          271 APE----SLAVLFNPARNEAYVTHRQAGKVSVIDA----KSYKVVKTFDT---PTHPNSLALSADGKT  327 (353)
T ss_dssp             CSS----CCCEEEETTTTEEEEEETTTTEEEEEET----TTTEEEEEEEC---CSEEEEEEECTTSCE
T ss_pred             cCC----CceEEECCCCCEEEEEECCCCeEEEEEC----CCCeEEEEEec---CCCCCeEEEcCCCCE
Confidence            542    256999999998777664 3  999997    66778887765   347899999999973

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=5.1e-23  Score=199.62  Aligned_cols=270  Identities=14%  Similarity=0.211  Sum_probs=191.9

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCC-CcEEEEcCC--CCc--eEEEcccCccceeEEEEeeCCCEEEEEeC-CCcEEEEeCC
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVD-TNAVLFDRP--SGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGS  295 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~d-g~i~vwd~~--~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg~i~iwd~~  295 (504)
                      +...+.+++|+|+|++|++++.+ +.|.+|++.  +++  .+..+..+. .+.+++|+|++++|++++. ++.|.+||+.
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            45678899999999988888876 999999987  554  344555444 7899999999998776664 8899999995


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEe-CCCeEEEEECCC-CeEEEEe--ecCCCCCCCCCeEEEEECCCCCE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSS-GICLTQV--SDAGTDGRPEGYTSAAFHPDGLI  371 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~v~~~~~~pdg~~  371 (504)
                      .+........+..+ ..+.+++|+|+++++++++ .++.|.+||+.+ ++.....  ... . .....+.+++|+|+|++
T Consensus       115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~pdg~~  191 (343)
T 1ri6_A          115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-T-VEGAGPRHMVFHPNEQY  191 (343)
T ss_dssp             TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-C-STTCCEEEEEECTTSSE
T ss_pred             CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc-c-CCCCCcceEEECCCCCE
Confidence            32222344444433 4588999999999888887 899999999987 6443221  110 0 12246889999999997


Q ss_pred             EEEE-eCCCcEEEEEcCC--Cce--eeeee----CC--CCCeEEEEEcCCCcEEEEEe-CCc-EEEEEcCC----Cccee
Q 010669          372 LGTG-TSEALVKIWDVKS--QAN--VAKFD----GH--VGAVTAISFSENGYYLATAA-HDG-VKLWDLRK----LKNFR  434 (504)
Q Consensus       372 l~~g-~~dg~I~iwd~~~--~~~--~~~~~----~~--~~~i~~l~~s~~g~~l~s~~-~d~-v~vwd~~~----~~~~~  434 (504)
                      ++++ ..++.|.+||+..  ++.  ...+.    ++  ...+..++|+|+|.+|+++. .++ |.+||+..    .+.+.
T Consensus       192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~  271 (343)
T 1ri6_A          192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG  271 (343)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence            6555 4789999999953  332  22222    11  23577899999998887555 556 99999982    23344


Q ss_pred             eeecCCCCCCeeEEEECCCCCEEEEEeC-c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          435 SFESSDSETPTNSVDFDHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       435 ~~~~~~~~~~v~~i~~~~~g~~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      .+...   ..+..++|+|+|++|++++. +  +.+|+++.....++.+..+..   .....+++|.++-.
T Consensus       272 ~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~---g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          272 FQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV---GQGPMWVVVNAHEG  335 (343)
T ss_dssp             EEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC---SSSCCEEEEEEEC-
T ss_pred             eecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc---CCCCeeEEEEcccC
Confidence            44432   34889999999999998874 3  999988655455667777755   24567888877643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=1.3e-23  Score=226.09  Aligned_cols=268  Identities=12%  Similarity=0.075  Sum_probs=204.9

Q ss_pred             CCCeEEEEeccCCCEEEEEeC-CC-----cEEEEcCCCCceEEEcccCcc------------------------ceeEEE
Q 010669          223 KPGIVSLDIHYSKDVIATGGV-DT-----NAVLFDRPSGQIVTTLSGHSK------------------------KVTSVK  272 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~-dg-----~i~vwd~~~~~~~~~~~~h~~------------------------~v~~l~  272 (504)
                      ...+.+++|+|||++|++++. ||     .|++||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            446899999999999999998 88     899999999987776655433                        388999


Q ss_pred             EeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q 010669          273 FVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG  352 (504)
Q Consensus       273 ~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  352 (504)
                      |+|||++|++++. +.|.+||+.++.. .....+..|...+.+++|+|+|++|++++ ++.|++||+.+++.........
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCST-TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCc-ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence            9999999999887 8999999987410 03345667788899999999999999987 4699999999987654432110


Q ss_pred             CC---CC--------CCCeEEEEECCCCCEEEEEeCCC---------------------------------cEEEEEcCC
Q 010669          353 TD---GR--------PEGYTSAAFHPDGLILGTGTSEA---------------------------------LVKIWDVKS  388 (504)
Q Consensus       353 ~~---~~--------~~~v~~~~~~pdg~~l~~g~~dg---------------------------------~I~iwd~~~  388 (504)
                      ..   +.        ...+..++|+|||+.|++++.|+                                 .|++||+.+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence            00   00        00147899999999999987765                                 789999988


Q ss_pred             -Cceeeeee--CCCCCeEEEEEcCCCcEEEEEeC-----Cc-EEEEEcCCCcceeeeecCCCCC---CeeEEEECCCCCE
Q 010669          389 -QANVAKFD--GHVGAVTAISFSENGYYLATAAH-----DG-VKLWDLRKLKNFRSFESSDSET---PTNSVDFDHSGSY  456 (504)
Q Consensus       389 -~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~~~-----d~-v~vwd~~~~~~~~~~~~~~~~~---~v~~i~~~~~g~~  456 (504)
                       ++......  .|...+..++| |||++|++++.     +. |++||+.+++....+..+. ..   .+..++|+|||++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~spdg~~  350 (741)
T 2ecf_A          273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-PTWVPLHNSLRFLDDGSI  350 (741)
T ss_dssp             TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC-SSCCCCCSCCEECTTSCE
T ss_pred             CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC-CCcCCcCCceEECCCCeE
Confidence             77554433  36778999999 99999987753     24 9999999988766655432 12   3568999999998


Q ss_pred             EEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEE-EEeecCc
Q 010669          457 LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFL-FLFVLGQ  501 (504)
Q Consensus       457 l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l-~~~~~g~  501 (504)
                      +++++.+  ++||.++.   .+. ...+..|  ...|..+ .|+++|+
T Consensus       351 ~~~~~~~g~~~l~~~~~---~~~-~~~l~~~--~~~v~~~~~~s~dg~  392 (741)
T 2ecf_A          351 LWSSERTGFQHLYRIDS---KGK-AAALTHG--NWSVDELLAVDEKAG  392 (741)
T ss_dssp             EEEECTTSSCEEEEECS---SSC-EEESCCS--SSCEEEEEEEETTTT
T ss_pred             EEEecCCCccEEEEEcC---CCC-eeeeeec--ceEEEeEeEEeCCCC
Confidence            8888777  88998853   233 6777776  6678777 5999986

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=2.6e-23  Score=214.60  Aligned_cols=263  Identities=13%  Similarity=0.113  Sum_probs=205.4

Q ss_pred             eccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeC--CCCCCcceeEEecc
Q 010669          231 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG--SEDGNYDCKHTLKD  308 (504)
Q Consensus       231 ~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~~~~  308 (504)
                      |+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+|+|++|++++.|++|.+||+  .+.   .++..+. 
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~---~~~~~i~-  219 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP---TKVAEIK-  219 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---EEEEEEE-
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC---cEEEEEe-
Confidence            889999999999999999999999999999884333 899999999999999999999999999  553   5666666 


Q ss_pred             CCcCeEEEEEcc----CCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCC-----CC-CCCeEEEEECCCCC-EEEEEe
Q 010669          309 HTAEVQAVTVHA----TNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTD-----GR-PEGYTSAAFHPDGL-ILGTGT  376 (504)
Q Consensus       309 h~~~v~~l~~~p----~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~-----~~-~~~v~~~~~~pdg~-~l~~g~  376 (504)
                      +...+..++|+|    +|+++++++. +++|.+||..+++.+..+...+..     .| ...+..+.++|++. ++++..
T Consensus       220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            445689999999    9999999885 899999999999988877632100     01 23688999999765 556667


Q ss_pred             CCCcEEEEEcCCCceee--eeeCCCCCeEEEEEcCCCcEEEEEeC-Cc-EEEEEcCCCcceeeeecCC--CCCCeeEEEE
Q 010669          377 SEALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNFRSFESSD--SETPTNSVDF  450 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~g~~l~s~~~-d~-v~vwd~~~~~~~~~~~~~~--~~~~v~~i~~  450 (504)
                      .+|.|.+||+.+.+.+.  .+. +...+.++.|+|+|++|++++. ++ |.+||+.+++++..+....  |......+ +
T Consensus       300 ~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~  377 (543)
T 1nir_A          300 ETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-V  377 (543)
T ss_dssp             TTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-E
T ss_pred             CCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-C
Confidence            88999999998866543  343 5567889999999998776654 44 9999999999888877521  22223333 4


Q ss_pred             CCC-CCEEEEEe-C-c-EEEEEeeccC---ccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          451 DHS-GSYLAVAS-A-D-IRVYQVASVK---ADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       451 ~~~-g~~l~~~~-~-d-i~vw~~~~~~---~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +|+ |.+++++. . + |.||++...+   ..|++++++.+|  .+.+..+.++|+|+.
T Consensus       378 ~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~--g~~~~~v~~~pdg~~  434 (543)
T 1nir_A          378 HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ--GGGSLFIKTHPKSSH  434 (543)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCCE
T ss_pred             CCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC--CCCceEEEcCCCCCc
Confidence            777 66666664 3 3 9999995421   129999999998  677889999999975

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=6e-23  Score=211.91  Aligned_cols=258  Identities=14%  Similarity=0.126  Sum_probs=201.8

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcC--CCCceEEEcccCccceeEEEEee----CCCEEEEEeC-CCcEEEEeCCCCC
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDR--PSGQIVTTLSGHSKKVTSVKFVT----EGDLFLTGSA-DKTVRVWQGSEDG  298 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~--~~~~~~~~~~~h~~~v~~l~~s~----~~~~l~s~s~-dg~i~iwd~~~~~  298 (504)
                      +.+++|+|+|++|++++.|+.|.+||+  .+++.+.++.. ...+..++|+|    +|+++++++. +++|.+||..+. 
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-  258 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-  258 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-
Confidence            889999999999999999999999999  88888888874 45689999999    9999998884 899999998775 


Q ss_pred             CcceeEEecc----------CC-cCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCeEEE--EeecCCCCCCCCCeEEEE
Q 010669          299 NYDCKHTLKD----------HT-AEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLT--QVSDAGTDGRPEGYTSAA  364 (504)
Q Consensus       299 ~~~~~~~~~~----------h~-~~v~~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~  364 (504)
                        +++..+..          |. ..+.++.++|++. ++++...++.|.+||+.+.+.+.  .+.      +...+..+.
T Consensus       259 --~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~------~~~~~~~~~  330 (543)
T 1nir_A          259 --EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG------AAPFLHDGG  330 (543)
T ss_dssp             --CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE------CCSSCCCEE
T ss_pred             --ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec------cCcCccCce
Confidence              55555543          22 3789999999776 45666778999999998865443  222      234577899


Q ss_pred             ECCCCCEEEEE-eCCCcEEEEEcCCCceeeeeeC----CCCCeEEEEEcCC-CcEEEEEe-CCc-EEEEEcCC-------
Q 010669          365 FHPDGLILGTG-TSEALVKIWDVKSQANVAKFDG----HVGAVTAISFSEN-GYYLATAA-HDG-VKLWDLRK-------  429 (504)
Q Consensus       365 ~~pdg~~l~~g-~~dg~I~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~-g~~l~s~~-~d~-v~vwd~~~-------  429 (504)
                      |+|+|++|+++ ..++.|.+||+.+++.+..+..    |.+....+ ++|+ |.+++++. .++ |.+||+.+       
T Consensus       331 ~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~  409 (543)
T 1nir_A          331 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA  409 (543)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred             ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhc
Confidence            99999977655 4589999999999998888764    55444443 4676 66677765 445 99999988       


Q ss_pred             CcceeeeecCCCCCCeeEEEECCCCCEEEEEe--------Cc-EEEEEeeccCccceeE-EEc--------cCCCCCCce
Q 010669          430 LKNFRSFESSDSETPTNSVDFDHSGSYLAVAS--------AD-IRVYQVASVKADWNCI-KTF--------PDLSGTGAA  491 (504)
Q Consensus       430 ~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~--------~d-i~vw~~~~~~~~~~~i-~~~--------~~h~~~~~v  491 (504)
                      ++.++++..+  ...+..+.|+|+|++|++++        .+ |.|||+.+    .+.. ..+        ..+  ...+
T Consensus       410 ~~~v~~l~~~--g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~----~~~~~~~~~v~~~~~~~~~--~~~~  481 (543)
T 1nir_A          410 WKKVAELQGQ--GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN----LDAKYQVLPIAEWADLGEG--AKRV  481 (543)
T ss_dssp             TSEEEEEECS--CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC----TTSCCEEECHHHHHCCCSS--CCEE
T ss_pred             CeEEEEEEcC--CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC----CCCCeEEeechhhcccCCC--CCce
Confidence            7888888876  45678899999999999987        23 99999944    3333 332        344  6789


Q ss_pred             eEEEEeecCcc
Q 010669          492 SFLFLFVLGQT  502 (504)
Q Consensus       492 ~~l~~~~~g~~  502 (504)
                      ..+.|+++|+.
T Consensus       482 ~~~~~~~~g~~  492 (543)
T 1nir_A          482 VQPEYNKRGDE  492 (543)
T ss_dssp             EEEEECSSSSE
T ss_pred             EeccCCCCCCE
Confidence            99999999974

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=1.8e-23  Score=197.99  Aligned_cols=233  Identities=12%  Similarity=0.109  Sum_probs=180.1

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC-CceEEEcccC-ccceeEEEEeeCCCEEEEEe--CCCcEEEEeCCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGH-SKKVTSVKFVTEGDLFLTGS--ADKTVRVWQGSE  296 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~s--~dg~i~iwd~~~  296 (504)
                      .|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|++++  .++...||.+..
T Consensus        39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~  117 (297)
T 2ojh_A           39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS  117 (297)
T ss_dssp             EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred             cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence            4677899999999999999987 78999999998 8877776666 36789999999999999998  445666665543


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEE-EEeCCCeEEEEECC--CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWCFYDLS--SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~-s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                      ..  .....+..+ ..+..++|+|++++|+ +++.++.+.+|+++  ++.. ..+.     .+...+.+++|+|+|++|+
T Consensus       118 ~~--~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~-----~~~~~~~~~~~s~dg~~l~  188 (297)
T 2ojh_A          118 TG--GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLT-----HGEGRNDGPDYSPDGRWIY  188 (297)
T ss_dssp             TC--CCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECC-----CSSSCEEEEEECTTSSEEE
T ss_pred             CC--CceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcc-----cCCCccccceECCCCCEEE
Confidence            21  223344433 3489999999999877 77889999999863  4433 2332     4456799999999999887


Q ss_pred             EEe-CCCcEEEEEcC-CCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-----------c-EEEEEcCCCcceeeeecC
Q 010669          374 TGT-SEALVKIWDVK-SQANVAKFDGHVGAVTAISFSENGYYLATAAHD-----------G-VKLWDLRKLKNFRSFESS  439 (504)
Q Consensus       374 ~g~-~dg~I~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-----------~-v~vwd~~~~~~~~~~~~~  439 (504)
                      +++ .++.+++|++. .+..+..+..|...+.+++|+|+|.+|++++.+           . |++||+.+++........
T Consensus       189 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  268 (297)
T 2ojh_A          189 FNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF  268 (297)
T ss_dssp             EEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE
T ss_pred             EEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC
Confidence            766 58999999986 556677777788889999999999999888764           4 999999987664444322


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCc
Q 010669          440 DSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       440 ~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      .+...+..++|+|+|++|++++.+
T Consensus       269 ~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          269 GGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             ESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             CCCcccccceECCCCCEEEEEEec
Confidence            235678899999999999988765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=4.2e-23  Score=207.31  Aligned_cols=242  Identities=12%  Similarity=0.085  Sum_probs=176.1

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----------ceEEEc-----ccCccceeEEEEeeCCCEEE----EE
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----------QIVTTL-----SGHSKKVTSVKFVTEGDLFL----TG  283 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----------~~~~~~-----~~h~~~v~~l~~s~~~~~l~----s~  283 (504)
                      ...+..+++++++.++++++.+| +++|+....          ..+...     ..+...|.+++|+|++++|+    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34578999999999999999888 888764210          111111     13566799999999999999    78


Q ss_pred             eCCCcEEEEeCCCC--------CCcceeEEeccCCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 010669          284 SADKTVRVWQGSED--------GNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD  354 (504)
Q Consensus       284 s~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  354 (504)
                      +.|++|+|||+.+.        ........+.+|...|.+++|+|+ +++|++++.||+|++||++++.......     
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-----  189 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-----  189 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-----
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-----
Confidence            89999999998653        111234566789999999999998 7899999999999999999986654443     


Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCC-------CCCeEEEEEcCCCcEEEEEe-CC------
Q 010669          355 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH-------VGAVTAISFSENGYYLATAA-HD------  420 (504)
Q Consensus       355 ~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~g~~l~s~~-~d------  420 (504)
                      +|...+.+++|+|+|++|++|+.||.|++||++ ++....+..|       ...|.++.|++++.++++.+ .+      
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~  268 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS  268 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence            466789999999999999999999999999998 5555555433       23799999999988886543 21      


Q ss_pred             c-EEEEEcCCCcc--e---eeeecC-----CCCCCeeEEEECCCCCEEEEEeCc---EEEEEeec
Q 010669          421 G-VKLWDLRKLKN--F---RSFESS-----DSETPTNSVDFDHSGSYLAVASAD---IRVYQVAS  471 (504)
Q Consensus       421 ~-v~vwd~~~~~~--~---~~~~~~-----~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~  471 (504)
                      . +++||+++.+.  .   ..+...     ....+...+.+-++.+++++++..   +.|.....
T Consensus       269 ~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          269 PDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             CEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             CceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence            2 89999986531  1   111111     111222233444777888877664   77777543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=5.7e-22  Score=191.66  Aligned_cols=256  Identities=13%  Similarity=0.132  Sum_probs=186.3

Q ss_pred             EeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC-CCcEEEEeCCCCCCcce-eEEe
Q 010669          230 DIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSEDGNYDC-KHTL  306 (504)
Q Consensus       230 ~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~-~~~~  306 (504)
                      .|.++++ .+++++.++.|.+||..+++....+..+...+ +++|+|+++++++++. ++.|.+||..++   .. ...+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~---~~~~~~~   79 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE---PPKVVAI   79 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS---SCEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC---ceeEEec
Confidence            3555555 47778889999999999999988887666667 9999999997666655 899999999875   33 5555


Q ss_pred             ccCCcCeEEEEEccCCCEEEEEeCCC---eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE-EEeCCCc-E
Q 010669          307 KDHTAEVQAVTVHATNKYFVTASLDN---TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSEAL-V  381 (504)
Q Consensus       307 ~~h~~~v~~l~~~p~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~-~g~~dg~-I  381 (504)
                      ..+..+..+++|+|++++++++..++   .|.+||+.+++.+..+..      .....+++|+|||++++ ++..++. |
T Consensus        80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~------~~~~~~~~~spdg~~l~~~~~~~~~~i  153 (331)
T 3u4y_A           80 QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI------PYDAVGIAISPNGNGLILIDRSSANTV  153 (331)
T ss_dssp             EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC------CTTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred             ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC------CCCccceEECCCCCEEEEEecCCCceE
Confidence            56666665699999999999555553   899999999988777652      23468999999998554 4556688 9


Q ss_pred             EEEEcCCCceee----eeeCCCCCeEEEEEcCCCcEEEEEeC-Cc-EEEEEcCCCcc---eeeeecCCCCCCeeEEEECC
Q 010669          382 KIWDVKSQANVA----KFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKN---FRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       382 ~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~g~~l~s~~~-d~-v~vwd~~~~~~---~~~~~~~~~~~~v~~i~~~~  452 (504)
                      .+|++.....+.    ........+..++|+|+|+++++++. ++ |.+||+.+++.   +..+..   ...+..++|+|
T Consensus       154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~sp  230 (331)
T 3u4y_A          154 RRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSR  230 (331)
T ss_dssp             EEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECT
T ss_pred             EEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceEEECC
Confidence            999987543321    12233456899999999997766654 55 99999998887   666654   35678899999


Q ss_pred             CCCEEEEEeCc---EEEEEeeccCcccee--EEEccCC--CCCC---ceeEEEEeecCcc
Q 010669          453 SGSYLAVASAD---IRVYQVASVKADWNC--IKTFPDL--SGTG---AASFLFLFVLGQT  502 (504)
Q Consensus       453 ~g~~l~~~~~d---i~vw~~~~~~~~~~~--i~~~~~h--~~~~---~v~~l~~~~~g~~  502 (504)
                      +|++|++++..   +.+|+.    .+++.  +..+..+  ....   ....++|+|+|+.
T Consensus       231 dg~~l~v~~~~~~~i~~~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  286 (331)
T 3u4y_A          231 DGSTVYVLTESTVDVFNFNQ----LSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETK  286 (331)
T ss_dssp             TSSEEEEECSSEEEEEEEET----TTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSE
T ss_pred             CCCEEEEEEcCCCEEEEEEC----CCCceeeecccccccccCCCCcccccceEECCCCCE
Confidence            99988877643   888987    33333  4444322  0112   2245899999874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1e-22  Score=192.71  Aligned_cols=245  Identities=10%  Similarity=0.138  Sum_probs=182.1

Q ss_pred             EEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC-CCCcceeEEeccC-CcCeEEEE
Q 010669          240 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-DGNYDCKHTLKDH-TAEVQAVT  317 (504)
Q Consensus       240 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~h-~~~v~~l~  317 (504)
                      .++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|.+||+.+ +   ........| ...+.+++
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP---SPEKVDTGFATICNNDHG   91 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC---SCEECCCTTCCCBCSCCE
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC---CceEeccccccccccceE
Confidence            3467899999999988765 4455888999999999999999887 78999999987 5   334444444 46789999


Q ss_pred             EccCCCEEEEEeC--CCe--EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCC-Cce
Q 010669          318 VHATNKYFVTASL--DNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSEALVKIWDVKS-QAN  391 (504)
Q Consensus       318 ~~p~~~~l~s~s~--dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~-~g~~dg~I~iwd~~~-~~~  391 (504)
                      |+|++++|++++.  ++.  |..|++.++.. ..+.      ....+.+++|+|+|+.|+ ++..++.++||++.. +..
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~  164 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV  164 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEee------cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence            9999999999983  344  45555555542 2332      123488999999999877 778899999999642 334


Q ss_pred             eeeeeCCCCCeEEEEEcCCCcEEEEEeC-Cc-EEEEEcC-CCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-----
Q 010669          392 VAKFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLR-KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----  463 (504)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~g~~l~s~~~-d~-v~vwd~~-~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-----  463 (504)
                      ...+..+...+.+++|+|+|.+|+.++. ++ +.+|++. .+.....+..+  ...+..+.|+|+|++|++++.+     
T Consensus       165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~  242 (297)
T 2ojh_A          165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS--AYGDWFPHPSPSGDKVVFVSYDADVFD  242 (297)
T ss_dssp             EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC--SEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred             ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC--CcccCCeEECCCCCEEEEEEcCCCCCc
Confidence            4566667789999999999998887764 56 8888876 44455555443  4578899999999999887652     


Q ss_pred             --------EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          464 --------IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       464 --------i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                              +.+|++..  .....+..+.+|  ...+.++.|+|+|+.
T Consensus       243 ~~~~~~~~l~~~d~~~--~~~~~~~~~~~~--~~~~~~~~~spdg~~  285 (297)
T 2ojh_A          243 HPRDLDVRVQLMDMDG--GNVETLFDLFGG--QGTMNSPNWSPDGDE  285 (297)
T ss_dssp             CCSSEEEEEEEEETTS--CSCEEEEEEEES--TTTSCSCCBCTTSSE
T ss_pred             ccccCceEEEEEecCC--CCceeeeccCCC--CcccccceECCCCCE
Confidence                    77888732  233445666676  678999999999974

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=8.2e-22  Score=190.55  Aligned_cols=240  Identities=9%  Similarity=0.074  Sum_probs=176.0

Q ss_pred             CCCeEEEEeccCCCEEEEEeC-CCcEEEEcCCCCce-EEEcccCccceeEEEEeeCCCEEEEEeCCC---cEEEEeCCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGV-DTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGDLFLTGSADK---TVRVWQGSED  297 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg---~i~iwd~~~~  297 (504)
                      ...+ +++|+|+|+++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++   .|.+||+.++
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~  118 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN  118 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence            4455 9999999996666555 88999999999987 777777777666699999999988655553   8999999875


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEE-eCCCe-EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE-
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTA-SLDNT-WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT-  374 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~-s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~-  374 (504)
                         .....+.. .....+++|+|+|++++++ ..++. |.+|++.....+...... ..........++|+|+|+++++ 
T Consensus       119 ---~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~  193 (331)
T 3u4y_A          119 ---KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE-FISGGTRPFNITFTPDGNFAFVA  193 (331)
T ss_dssp             ---EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE-EECSSSSEEEEEECTTSSEEEEE
T ss_pred             ---CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc-cccCCCCccceEECCCCCEEEEE
Confidence               45555543 3457999999999865555 55578 999999864433211100 0022345789999999996554 


Q ss_pred             EeCCCcEEEEEcCCCce---eeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcc--eeeeecC--CCC---
Q 010669          375 GTSEALVKIWDVKSQAN---VAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKN--FRSFESS--DSE---  442 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~--~~~~~~~--~~~---  442 (504)
                      +..++.|++||+.+++.   +..+.. ...+..++|+|+|++|++++.+ + |.+||+.+++.  +..+...  ...   
T Consensus       194 ~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
T 3u4y_A          194 NLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL  272 (331)
T ss_dssp             ETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG
T ss_pred             eCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc
Confidence            45689999999999887   777764 3677899999999988777654 4 99999998776  3333221  001   


Q ss_pred             CCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669          443 TPTNSVDFDHSGSYLAVASAD---IRVYQV  469 (504)
Q Consensus       443 ~~v~~i~~~~~g~~l~~~~~d---i~vw~~  469 (504)
                      .....++|+|+|++|++++.+   +.+|++
T Consensus       273 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~  302 (331)
T 3u4y_A          273 FGANQMALNKTETKLFISANISRELKVFTI  302 (331)
T ss_dssp             TTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence            123568999999999877665   999998

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=8.4e-22  Score=190.97  Aligned_cols=255  Identities=13%  Similarity=0.160  Sum_probs=180.9

Q ss_pred             EEEEEeCCCcEEEEcCC-CC--ceEEEcccCccceeEEEEeeCCCEEEEEeCC-CcEEEEeCCC-CCCcceeEEeccCCc
Q 010669          237 VIATGGVDTNAVLFDRP-SG--QIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD-KTVRVWQGSE-DGNYDCKHTLKDHTA  311 (504)
Q Consensus       237 ~l~sg~~dg~i~vwd~~-~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d-g~i~iwd~~~-~~~~~~~~~~~~h~~  311 (504)
                      ++++++.++.|++|++. ++  +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++.. .+....+..+..+. 
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence            44455789999999985 33  233333 467789999999999988888876 9999999972 12333444554443 


Q ss_pred             CeEEEEEccCCCEEEEEeC-CCeEEEEECCCC---eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEc
Q 010669          312 EVQAVTVHATNKYFVTASL-DNTWCFYDLSSG---ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDV  386 (504)
Q Consensus       312 ~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~  386 (504)
                      .+..++|+|+++++++++. ++.|.+||+..+   .....+.      ....+.+++|+|+|+++++++ .++.|++||+
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  158 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE------GLDGCHSANISPDNRTLWVPALKQDRICLFTV  158 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc------CCCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence            7899999999998877665 889999999533   3333332      123588999999999888777 8999999999


Q ss_pred             CC-Cceee----eeeC-CCCCeEEEEEcCCCcEEEEEe-CCc-EEEEEcCC--Ccc--eeeeecC----CCCCCeeEEEE
Q 010669          387 KS-QANVA----KFDG-HVGAVTAISFSENGYYLATAA-HDG-VKLWDLRK--LKN--FRSFESS----DSETPTNSVDF  450 (504)
Q Consensus       387 ~~-~~~~~----~~~~-~~~~i~~l~~s~~g~~l~s~~-~d~-v~vwd~~~--~~~--~~~~~~~----~~~~~v~~i~~  450 (504)
                      .+ ++...    .+.. ....+.+++|+|+|.+|++++ .++ |.+||+..  +..  ...+...    .....+..++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~  238 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  238 (343)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence            87 54432    2232 334788999999999776665 556 99999953  332  2222211    11235678999


Q ss_pred             CCCCCEEEEEe-Cc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          451 DHSGSYLAVAS-AD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       451 ~~~g~~l~~~~-~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +|+|++|++++ .+  +.+|++.......+.+..+..+  . .+.+++|+++|+.
T Consensus       239 s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~-~~~~~~~s~dg~~  290 (343)
T 1ri6_A          239 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE--T-QPRGFNVDHSGKY  290 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS--S-SCCCEEECTTSSE
T ss_pred             CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC--C-ccceEEECCCCCE
Confidence            99999888665 34  9999995433456777777664  3 3889999999873

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=3.9e-21  Score=187.29  Aligned_cols=244  Identities=13%  Similarity=0.143  Sum_probs=172.5

Q ss_pred             CCCeEEEEeccCCCEEEEEeC---CCcEEEEcCCCCc--eEEEcccCccceeEEEEeeCCCEEEEEe-CCCcEEEEeCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGV---DTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSE  296 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~---dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s-~dg~i~iwd~~~  296 (504)
                      ......++|+|+|+ |++++.   ++.|.+|++.+++  .+..+..+...+..++|+|+|++|++++ .++.|.+|++..
T Consensus        39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            34567899999999 554443   6899999997665  4445555777899999999999888887 789999999965


Q ss_pred             CCCcceeEEecc---------CCcCeEEEEEccCCCEEEEEeCCCeEEEEECC-CCeEEEEeecCCCCCCCCCeEEEEEC
Q 010669          297 DGNYDCKHTLKD---------HTAEVQAVTVHATNKYFVTASLDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFH  366 (504)
Q Consensus       297 ~~~~~~~~~~~~---------h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~  366 (504)
                      .+....+..+..         +...+.+++|+|+|+++++...++.|.+||+. ++......... . ........++|+
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~-~~g~~p~~~~~s  195 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT-M-EAGFGPRHLVFS  195 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE-C-CTTCCEEEEEEC
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE-c-CCCCCCceEEEC
Confidence            444344443322         12348899999999966666678899999998 55433221110 1 112357889999


Q ss_pred             CCCCEEEE-EeCCCcEEEEEcCC--Cce--eeeeeCCC------CCeEEEEEcCCCcEEEEE-eCCc-EEEEEcCCC---
Q 010669          367 PDGLILGT-GTSEALVKIWDVKS--QAN--VAKFDGHV------GAVTAISFSENGYYLATA-AHDG-VKLWDLRKL---  430 (504)
Q Consensus       367 pdg~~l~~-g~~dg~I~iwd~~~--~~~--~~~~~~~~------~~i~~l~~s~~g~~l~s~-~~d~-v~vwd~~~~---  430 (504)
                      |||+++++ +..++.|.+|++..  ++.  +..+....      ..+..++|+|+|++|+++ ..++ |.+||+...   
T Consensus       196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~  275 (347)
T 3hfq_A          196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL  275 (347)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE
Confidence            99996555 56788999999874  432  22333222      358899999999988554 4455 999999732   


Q ss_pred             cceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEeec
Q 010669          431 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVAS  471 (504)
Q Consensus       431 ~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~  471 (504)
                      +.+..+..+  ...+..++|+|+|++|++++.+   +.+|+++.
T Consensus       276 ~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          276 TLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             EEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            333344332  3467899999999999888754   99998754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=7.2e-23  Score=219.70  Aligned_cols=271  Identities=9%  Similarity=0.027  Sum_probs=193.0

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCcc---ceeEEEEeeCCCEEEEEeCC---------CcEEEE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK---KVTSVKFVTEGDLFLTGSAD---------KTVRVW  292 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~s~d---------g~i~iw  292 (504)
                      .+.+++|+|||+++++ +.||.|++||+.+++....+.+|..   .|.+++|+|||++|++++.+         +.|.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678899999997776 7899999999999988888877765   49999999999999998764         788899


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCC--------------CC
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR--------------PE  358 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------~~  358 (504)
                      |+.++.. ..+.....|...+..++|+|+|+.|+.++. +.|++||+.+++.......... ..              ..
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~-~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE-GVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT-TTEEEEECCHHHHHTTSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC-CceECcccceeEEEEecc
Confidence            9987531 222222345556889999999999999886 7999999998876654431100 00              01


Q ss_pred             CeEEEEECCCCCEEEEEeCCC----------------------------------cEEEEEcCCCceeeeeeCC------
Q 010669          359 GYTSAAFHPDGLILGTGTSEA----------------------------------LVKIWDVKSQANVAKFDGH------  398 (504)
Q Consensus       359 ~v~~~~~~pdg~~l~~g~~dg----------------------------------~I~iwd~~~~~~~~~~~~~------  398 (504)
                      .+.+++|+|||+.|++++.++                                  .|++||+.+++....+..+      
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~  253 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence            237899999999999887543                                  7999999888765556543      


Q ss_pred             CCCeEEEEEcCCCcEEEEEeCC----c-EEEEEcCCCcceeeeecCCCCCCe----eEEEECCCCCEEEEE-e-Cc----
Q 010669          399 VGAVTAISFSENGYYLATAAHD----G-VKLWDLRKLKNFRSFESSDSETPT----NSVDFDHSGSYLAVA-S-AD----  463 (504)
Q Consensus       399 ~~~i~~l~~s~~g~~l~s~~~d----~-v~vwd~~~~~~~~~~~~~~~~~~v----~~i~~~~~g~~l~~~-~-~d----  463 (504)
                      ...+..++|+|||++|++....    . |++||+.+++....+.... ...+    ..++|+|||+.|+.. + .+    
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  332 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES-EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG  332 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC-SSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc-CCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence            5678999999999988776432    3 9999999888665554321 2223    378999999977754 3 22    


Q ss_pred             --EEEEEee-ccCccceeEEEccCCCCCCceeE-EEEeecCcc
Q 010669          464 --IRVYQVA-SVKADWNCIKTFPDLSGTGAASF-LFLFVLGQT  502 (504)
Q Consensus       464 --i~vw~~~-~~~~~~~~i~~~~~h~~~~~v~~-l~~~~~g~~  502 (504)
                        .+||.++ .......+...+..+  ...+.. +.|+|+|+.
T Consensus       333 ~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~  373 (723)
T 1xfd_A          333 KFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNK  373 (723)
T ss_dssp             CEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTE
T ss_pred             ceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCE
Confidence              3566653 111110013444432  334544 689999874

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=7.6e-22  Score=191.91  Aligned_cols=253  Identities=10%  Similarity=0.030  Sum_probs=185.9

Q ss_pred             EEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCc-cceeEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCCcceeEE
Q 010669          228 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHS-KKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~  305 (504)
                      .+++++++.++++++.++.|.+||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.++   .....
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~---~~~~~   80 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC---KNTFH   80 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC---cEEEE
Confidence            35678888899999999999999999999888876543 2578999999998654 5567899999999875   44444


Q ss_pred             ecc-C-----CcCeEEEEEccCCCEEEEEeCC------------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC
Q 010669          306 LKD-H-----TAEVQAVTVHATNKYFVTASLD------------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP  367 (504)
Q Consensus       306 ~~~-h-----~~~v~~l~~~p~~~~l~s~s~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  367 (504)
                      +.. +     ...+.+++|+|+|+++++++.+            +.|.+||+.+++....+...   .+...+.+++|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~s~  157 (349)
T 1jmx_B           81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF---PMPRQVYLMRAAD  157 (349)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE---ECCSSCCCEEECT
T ss_pred             EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec---cCCCcccceeECC
Confidence            432 2     2337889999999999998865            89999999885432211100   1223588999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC------------------------------------------------
Q 010669          368 DGLILGTGTSEALVKIWDVKSQANVAKFDGHV------------------------------------------------  399 (504)
Q Consensus       368 dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~------------------------------------------------  399 (504)
                      ||+ +++++  +.|.+||+.+++.+..+..+.                                                
T Consensus       158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            999 55554  349999999887766554221                                                


Q ss_pred             --------------------CCeEEEEEcC-CCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669          400 --------------------GAVTAISFSE-NGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA  458 (504)
Q Consensus       400 --------------------~~i~~l~~s~-~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~  458 (504)
                                          ..+..++|+| +|.+++++ .+.|.+||+.+++.+..+...   ..+.+++|+|+|++|+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~  310 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD---HTYYCVAFDKKGDKLY  310 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS---SCCCEEEECSSSSCEE
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCC---CCccceEECCCCCEEE
Confidence                                1345678889 99999988 334999999998887777643   4578999999999888


Q ss_pred             EEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669          459 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       459 ~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~  497 (504)
                      +++.+  +.+||.    .+++.+..++...+...+..+.++
T Consensus       311 ~~~~~~~v~v~d~----~~~~~~~~~~~~~~~~~~~~~~~~  347 (349)
T 1jmx_B          311 LGGTFNDLAVFNP----DTLEKVKNIKLPGGDMSTTTPQVF  347 (349)
T ss_dssp             EESBSSEEEEEET----TTTEEEEEEECSSSCCBTCCCEEE
T ss_pred             EecCCCeEEEEec----cccceeeeeecCCCCCCCcceeEE
Confidence            87665  999998    667778777654223344444443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=5e-22  Score=213.74  Aligned_cols=260  Identities=10%  Similarity=0.032  Sum_probs=195.3

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc--eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      .|.+++|||||++|++++. +.|++||+.++.  ....+..|...+.+++|+|||++|+.++. +.|.+||+.++   ..
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g---~~  184 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASG---RQ  184 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTT---EE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCC---CE
Confidence            4788999999999999886 899999998873  44567778888999999999999998874 68999999874   33


Q ss_pred             eEEeccCCcC----------------eEEEEEccCCCEEEEEeCCC---------------------------------e
Q 010669          303 KHTLKDHTAE----------------VQAVTVHATNKYFVTASLDN---------------------------------T  333 (504)
Q Consensus       303 ~~~~~~h~~~----------------v~~l~~~p~~~~l~s~s~dg---------------------------------~  333 (504)
                      ......+...                +.++.|+|||++|++++.|+                                 .
T Consensus       185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            3333333322                47899999999999998766                                 7


Q ss_pred             EEEEECCC-CeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-----CCcEEEEEcCCCceeeeeeCCCC----CeE
Q 010669          334 WCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-----EALVKIWDVKSQANVAKFDGHVG----AVT  403 (504)
Q Consensus       334 i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-----dg~I~iwd~~~~~~~~~~~~~~~----~i~  403 (504)
                      |.+||+.+ ++.......   ..+...+..++| |||+.|++++.     ++.|++||+.+++....+..+..    .+.
T Consensus       265 l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLG---KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEECSSTTCCCEEECCC---SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             EEEEECCCCCceEEecCC---CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence            89999988 775443321   135677999999 99999987654     56899999999987776665543    456


Q ss_pred             EEEEcCCCcEEEEEeCCc-EEEEEcC-CCcceeeeecCCCCCCeeEE-EECCCCCEEEEEeC-c----EEEEEeeccCcc
Q 010669          404 AISFSENGYYLATAAHDG-VKLWDLR-KLKNFRSFESSDSETPTNSV-DFDHSGSYLAVASA-D----IRVYQVASVKAD  475 (504)
Q Consensus       404 ~l~~s~~g~~l~s~~~d~-v~vwd~~-~~~~~~~~~~~~~~~~v~~i-~~~~~g~~l~~~~~-d----i~vw~~~~~~~~  475 (504)
                      .++|+|||+++++++.++ +.||.+. .+. ...+..+  ...+..+ .|+|+|+.|++.+. +    ++||++...   
T Consensus       341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~---  414 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ---  414 (741)
T ss_dssp             CCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT---
T ss_pred             ceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC---
Confidence            899999999888888887 7777665 334 4545443  4567777 59999998765543 2    889998532   


Q ss_pred             ceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          476 WNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       476 ~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +..+..+..   ...+..+.|+|+|+.
T Consensus       415 g~~~~~l~~---~~~~~~~~~spdg~~  438 (741)
T 2ecf_A          415 GGQPQRLSK---APGMHSASFARNASV  438 (741)
T ss_dssp             CCCCEECCC---SCSEEEEEECTTSSE
T ss_pred             CCCeeeccc---CCCceEEEECCCCCE
Confidence            344555554   456789999999974

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=1.7e-21  Score=208.45  Aligned_cols=261  Identities=15%  Similarity=0.125  Sum_probs=191.4

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC-----CC
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-----DG  298 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~-----~~  298 (504)
                      ..|.+++|+|| +.++.+. ++.|++||+.+++... +..+...+.+++|+|||++|+++ .|+.|.+||+.+     + 
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g-  156 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS-  156 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC-
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC-
Confidence            56999999999 6665554 5999999998876644 44467779999999999998885 679999999987     4 


Q ss_pred             CcceeEEeccCCcC--------------eEEEEEccCCCEEEEEe---------------------------------CC
Q 010669          299 NYDCKHTLKDHTAE--------------VQAVTVHATNKYFVTAS---------------------------------LD  331 (504)
Q Consensus       299 ~~~~~~~~~~h~~~--------------v~~l~~~p~~~~l~s~s---------------------------------~d  331 (504)
                        ........+...              +.++.|+|||++|++++                                 .+
T Consensus       157 --~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          157 --RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             --CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             --CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence              233322333232              48899999999999987                                 44


Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCceeeeee--CCCC---C
Q 010669          332 NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-----LVKIWDVKSQANVAKFD--GHVG---A  401 (504)
Q Consensus       332 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg-----~I~iwd~~~~~~~~~~~--~~~~---~  401 (504)
                      ..|.+||+.+++......   ...+...+.+++|+|||+.|++++.++     .|++||+.+++....+.  .+..   .
T Consensus       235 ~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP  311 (706)
T ss_dssp             EEEEEEETTTTEEEECCC---CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred             eEEEEEECCCCceEeecc---CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence            679999999987654432   124556799999999999999887775     89999999884333332  1222   3


Q ss_pred             eEEEEEcC--CCcEEEEEeCCc-EEEEEcC-CCcceeeeecCCCCCCeeE-EEECCCCCEEEEEeCc-----EEEEEeec
Q 010669          402 VTAISFSE--NGYYLATAAHDG-VKLWDLR-KLKNFRSFESSDSETPTNS-VDFDHSGSYLAVASAD-----IRVYQVAS  471 (504)
Q Consensus       402 i~~l~~s~--~g~~l~s~~~d~-v~vwd~~-~~~~~~~~~~~~~~~~v~~-i~~~~~g~~l~~~~~d-----i~vw~~~~  471 (504)
                      +.++.|+|  ||.++++++.++ +++|++. ++..+..+..+  ...+.. ++|+|+|+.|++++.+     ..||.++.
T Consensus       312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~--~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG--EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS--SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred             cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC--CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence            46789999  999999988887 8888775 55555555443  455766 7999999988776554     47887754


Q ss_pred             cCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          472 VKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       472 ~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ..  +. +..+. |  ...+.+++|+|+|+.
T Consensus       390 ~~--~~-~~~l~-~--~~~~~~~~~spdg~~  414 (706)
T 2z3z_A          390 KG--GK-TKDLT-P--ESGMHRTQLSPDGSA  414 (706)
T ss_dssp             TC--CC-CEESC-C--SSSEEEEEECTTSSE
T ss_pred             CC--CC-ceecc-C--CCceEEEEECCCCCE
Confidence            32  22 34443 4  556889999999964

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=3.9e-20  Score=181.31  Aligned_cols=264  Identities=13%  Similarity=0.130  Sum_probs=180.4

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCC----CcEEEEcCCC--Cce--EEEcccCccceeEEEEeeCCCEEEEEe-CCCcEEEE
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVD----TNAVLFDRPS--GQI--VTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVW  292 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~d----g~i~vwd~~~--~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s-~dg~i~iw  292 (504)
                      +......++|+|+|++|++++.+    +.|.+|++..  ++.  +.....+......+++  ++++|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            45567789999999999998875    7999998765  432  3344445556777777  788777666 68899999


Q ss_pred             eCCCCCCcceeEEe---cc--------CCcCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCeE------E------EEe
Q 010669          293 QGSEDGNYDCKHTL---KD--------HTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGIC------L------TQV  348 (504)
Q Consensus       293 d~~~~~~~~~~~~~---~~--------h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~------~------~~~  348 (504)
                      ++...+........   .+        +...+.+++|+|+|+++++++ .++.|.+|++.....      +      ...
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99764432221111   11        123468899999999776665 488999999875431      1      111


Q ss_pred             ecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCce--eeeee---CCCCCeEEEEEcCCCcEEEEEeCC--
Q 010669          349 SDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQAN--VAKFD---GHVGAVTAISFSENGYYLATAAHD--  420 (504)
Q Consensus       349 ~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~~~--~~~~~---~~~~~i~~l~~s~~g~~l~s~~~d--  420 (504)
                      ..    ........++|+|||+++++++ .++.|.+||+.+++.  +..+.   .+...+..++|+|||++|+++..+  
T Consensus       206 ~~----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~  281 (361)
T 3scy_A          206 KV----APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA  281 (361)
T ss_dssp             EC----CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred             ec----CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence            11    2234578999999999887776 689999999987643  22232   233457899999999998777655  


Q ss_pred             c-EEEEEcC--CCc--ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCcee
Q 010669          421 G-VKLWDLR--KLK--NFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAAS  492 (504)
Q Consensus       421 ~-v~vwd~~--~~~--~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~  492 (504)
                      + |.+|++.  +++  .+..+..   ...+..++|+|+|++|++++.+   +.+|.++.  .+++........ ....++
T Consensus       282 ~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~--~~g~~~~~~~~~-~~~~p~  355 (361)
T 3scy_A          282 DGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ--ATGLLTDIKKDI-KVDKPV  355 (361)
T ss_dssp             CEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT--TTCCEEECSCCE-ECSSEE
T ss_pred             CEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC--CCCcEeecceee-eCCCCe
Confidence            5 9999996  344  2333332   3567899999999999988743   99988854  234433332111 245788


Q ss_pred             EEEEe
Q 010669          493 FLFLF  497 (504)
Q Consensus       493 ~l~~~  497 (504)
                      |+.|.
T Consensus       356 ~v~~~  360 (361)
T 3scy_A          356 CLKFV  360 (361)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            88876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=1.5e-20  Score=183.19  Aligned_cols=230  Identities=15%  Similarity=0.174  Sum_probs=183.5

Q ss_pred             CeEEEEeccCCCEE-EEEeCCCcEEEEcCCCCceEEEcccCccc---------eeEEEEeeCCCEEEEEe--CCCcEEEE
Q 010669          225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKK---------VTSVKFVTEGDLFLTGS--ADKTVRVW  292 (504)
Q Consensus       225 ~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~~~---------v~~l~~s~~~~~l~s~s--~dg~i~iw  292 (504)
                      .+..++|+|+|+++ +++..++.|.+||..+++.+..+..+...         +.+++|+|+++++++++  .++.|.+|
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~  169 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV  169 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence            46788999999955 45556799999999999988887754432         78899999999877765  47889999


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      |..+.   .....+..+...+.++.|+|+++++++++.++.|.+||+.+++....+... ..++...+..++|+|+|+.+
T Consensus       170 d~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l  245 (353)
T 3vgz_A          170 DGGNI---KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL-DDGKEHFFINISLDTARQRA  245 (353)
T ss_dssp             ETTTT---EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC-CSSSCCCEEEEEEETTTTEE
T ss_pred             cCCCC---ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC-CCCCCcccceEEECCCCCEE
Confidence            99875   556666545666889999999999999999999999999999888776532 22344568889999999977


Q ss_pred             EEEeC-CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEe-CCc-EEEEEcCCCcceeeeecCCCCCCeeEEE
Q 010669          373 GTGTS-EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA-HDG-VKLWDLRKLKNFRSFESSDSETPTNSVD  449 (504)
Q Consensus       373 ~~g~~-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~-~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~  449 (504)
                      ++++. ++.|.+||+.+++.+..+....  ...++|+|+|.++++++ .++ |.+||+.+++.+..+...   ..+.+++
T Consensus       246 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~  320 (353)
T 3vgz_A          246 FITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---THPNSLA  320 (353)
T ss_dssp             EEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---SEEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---CCCCeEE
Confidence            76655 5999999999998887776543  36799999999776666 456 999999999888877653   4689999


Q ss_pred             ECCCCCEEEEEeCc
Q 010669          450 FDHSGSYLAVASAD  463 (504)
Q Consensus       450 ~~~~g~~l~~~~~d  463 (504)
                      |+|+|++|+++..+
T Consensus       321 ~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          321 LSADGKTLYVSVKQ  334 (353)
T ss_dssp             ECTTSCEEEEEEEC
T ss_pred             EcCCCCEEEEEEcc
Confidence            99999977766543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=6.3e-21  Score=184.30  Aligned_cols=231  Identities=12%  Similarity=0.029  Sum_probs=179.3

Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEcccCcc--ceeEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCCcceeEEecc-C--
Q 010669          236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSK--KVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKD-H--  309 (504)
Q Consensus       236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~-h--  309 (504)
                      +++++++.++.|.+||..+++.+..+.....  .+..++|+|+++.+ ++++.++.|.+||+.++   .....+.. +  
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~   78 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---ETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---CEEEEEECCBTT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC---CeEeeEEcCCcc
Confidence            4789999999999999999988887763322  48899999999765 55566889999999875   34443432 1  


Q ss_pred             --CcCeEEEEEccCCCEEEEEe------------CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          310 --TAEVQAVTVHATNKYFVTAS------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       310 --~~~v~~l~~~p~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                        ...+.+++|+|+++++++++            .++.|.+||+.+++....+..      ...+.+++|+|+|++++++
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~  152 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------PRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC------CSSCCCEEECTTSSCEEEE
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC------CCCcceeEECCCCCEEEEe
Confidence              22577899999999998886            579999999999988776652      2357789999999988887


Q ss_pred             eCCCcEEEEEcCCCceeeeeeCC---------------------------------------------------------
Q 010669          376 TSEALVKIWDVKSQANVAKFDGH---------------------------------------------------------  398 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~~---------------------------------------------------------  398 (504)
                        ++.|.+||+.+++.+..+..+                                                         
T Consensus       153 --~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  230 (337)
T 1pby_B          153 --GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE  230 (337)
T ss_dssp             --SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred             --CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence              688999999887655433221                                                         


Q ss_pred             ---------CCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEE
Q 010669          399 ---------VGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVY  467 (504)
Q Consensus       399 ---------~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw  467 (504)
                               ...+.+++|+|+|.+|+++ .+.|.+||+.+++.+..+...   ..+.+++|+|+|++|++++.+  |.+|
T Consensus       231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~  306 (337)
T 1pby_B          231 MAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP---HSYYSVNVSTDGSTVWLGGALGDLAAY  306 (337)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS---SCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred             ceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC---CceeeEEECCCCCEEEEEcCCCcEEEE
Confidence                     1234568999999999988 334999999998887777653   467899999999999988766  9999


Q ss_pred             EeeccCccceeEEEccCC
Q 010669          468 QVASVKADWNCIKTFPDL  485 (504)
Q Consensus       468 ~~~~~~~~~~~i~~~~~h  485 (504)
                      ++    .+++.+..+..+
T Consensus       307 d~----~~~~~~~~~~~~  320 (337)
T 1pby_B          307 DA----ETLEKKGQVDLP  320 (337)
T ss_dssp             ET----TTCCEEEEEECG
T ss_pred             EC----cCCcEEEEEEcC
Confidence            98    667777777654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=3.6e-21  Score=206.47  Aligned_cols=267  Identities=10%  Similarity=0.048  Sum_probs=187.0

Q ss_pred             CeEEEEeccCCCEEEEEeCC---------CcEEEEcCCCCceEEEcc---cCccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669          225 GIVSLDIHYSKDVIATGGVD---------TNAVLFDRPSGQIVTTLS---GHSKKVTSVKFVTEGDLFLTGSADKTVRVW  292 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~s~dg~i~iw  292 (504)
                      .|.+++|||||++|++++.+         +.+++||+.+++. ..+.   +|...+..++|+|||+.|+.++. +.|++|
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~  139 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC  139 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence            48999999999999998764         7888999998876 3333   45556899999999999998886 799999


Q ss_pred             eCCCCCCcceeEEeccCCcC------------------eEEEEEccCCCEEEEEeCCC----------------------
Q 010669          293 QGSEDGNYDCKHTLKDHTAE------------------VQAVTVHATNKYFVTASLDN----------------------  332 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~------------------v~~l~~~p~~~~l~s~s~dg----------------------  332 (504)
                      |+.++   ........+...                  +.++.|+|||++|++++.|+                      
T Consensus       140 ~~~~g---~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (723)
T 1xfd_A          140 AHVGK---QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPY  216 (723)
T ss_dssp             SSSSS---CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred             ECCCC---ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceec
Confidence            99875   333333333332                  37899999999999987653                      


Q ss_pred             ------------eEEEEECCCCeEEEEeecCC-CCCCCCCeEEEEECCCCCEEEEEeC----CCcEEEEEcCCCceeeee
Q 010669          333 ------------TWCFYDLSSGICLTQVSDAG-TDGRPEGYTSAAFHPDGLILGTGTS----EALVKIWDVKSQANVAKF  395 (504)
Q Consensus       333 ------------~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~pdg~~l~~g~~----dg~I~iwd~~~~~~~~~~  395 (504)
                                  .|++||+.+++....+.... ...+...+..++|+|||+++++...    +..|++||+.+++....+
T Consensus       217 ~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~  296 (723)
T 1xfd_A          217 HYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH  296 (723)
T ss_dssp             ECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             cCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence                        79999999887544443110 0112467899999999998877643    357999999998876655


Q ss_pred             eC-CCCCe----EEEEEcCCCcEEEEE--eCCc-------EEEEEc-CCCcc--eeeeecCCCCCCeeE-EEECCCCCEE
Q 010669          396 DG-HVGAV----TAISFSENGYYLATA--AHDG-------VKLWDL-RKLKN--FRSFESSDSETPTNS-VDFDHSGSYL  457 (504)
Q Consensus       396 ~~-~~~~i----~~l~~s~~g~~l~s~--~~d~-------v~vwd~-~~~~~--~~~~~~~~~~~~v~~-i~~~~~g~~l  457 (504)
                      .. +.+.+    ..++|+|||++|+..  ..++       |.+||+ ..+..  ...+...  ...+.. ++|+|+|++|
T Consensus       297 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l  374 (723)
T 1xfd_A          297 EDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKI  374 (723)
T ss_dssp             EEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEE
T ss_pred             EeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEE
Confidence            43 33444    378999999977653  3332       777883 44331  3444322  234444 6999999999


Q ss_pred             EEEeCc-----EEEEEeeccCccceeEEEccC---CCCCCceeEEEEeecCcc
Q 010669          458 AVASAD-----IRVYQVASVKADWNCIKTFPD---LSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       458 ~~~~~d-----i~vw~~~~~~~~~~~i~~~~~---h~~~~~v~~l~~~~~g~~  502 (504)
                      +..+.+     ++||+++....  .....+..   |  ...+..+.|+|+|+.
T Consensus       375 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~l~~~~~~--~~~~~~~~~spdg~~  423 (723)
T 1xfd_A          375 YFLSTEDLPRRRQLYSANTVGN--FNRQCLSCDLVE--NCTYFSASFSHSMDF  423 (723)
T ss_dssp             EEEESSSCTTCCEEEEECSSTT--CCCBCSSTTSSS--SCCCCEEEECTTSSE
T ss_pred             EEEEcCCCCcceEEEEEeCCCC--CCcceecccccC--CCCeEEEEECCCCCE
Confidence            766542     89999854321  12233332   4  567889999999874

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=3.6e-21  Score=201.28  Aligned_cols=250  Identities=14%  Similarity=0.094  Sum_probs=182.2

Q ss_pred             CCCeEEEEeccCCCEEEEEeC-CCcEEEEcCCCCceEEEcccCc-cceeEEEEeeCCCEEEEEeC---CCcEEEEeCCC-
Q 010669          223 KPGIVSLDIHYSKDVIATGGV-DTNAVLFDRPSGQIVTTLSGHS-KKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSE-  296 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~s~---dg~i~iwd~~~-  296 (504)
                      ..+|++++|+|||+.|++++. ||++.||++.+++. ..+..|. ..+..++|+|| +++++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            346999999999999999887 99999999866555 4455455 68999999999 77777765   55567766544 


Q ss_pred             -CCCcceeEEeccCCcCeEEEEEccCCCE-EEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          297 -DGNYDCKHTLKDHTAEVQAVTVHATNKY-FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       297 -~~~~~~~~~~~~h~~~v~~l~~~p~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                       .+.  .. .+..+ ..+...+|+|+++. +++++.++.+.+||+.+++.......      ..  .+++|+|||++|++
T Consensus        99 ~~g~--~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~------~~--~~~~~spDG~~la~  166 (582)
T 3o4h_A           99 RPGE--EQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL------PG--FGFVSDIRGDLIAG  166 (582)
T ss_dssp             STTC--CE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE------SS--CEEEEEEETTEEEE
T ss_pred             CCCc--cc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC------CC--ceEEECCCCCEEEE
Confidence             322  11 23222 23446688888863 33334444555999999876655431      11  78999999999998


Q ss_pred             EeCC----CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc---EEEEEcCCCcceeeeecCCCCCCeeE
Q 010669          375 GTSE----ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG---VKLWDLRKLKNFRSFESSDSETPTNS  447 (504)
Q Consensus       375 g~~d----g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~---v~vwd~~~~~~~~~~~~~~~~~~v~~  447 (504)
                      ++.+    +.|++||+.+++.. .+..|.+.+..++|+|||++|+++..++   |++||+.+++.. .+..+  ...+..
T Consensus       167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~  242 (582)
T 3o4h_A          167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSS  242 (582)
T ss_dssp             EEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHH
T ss_pred             EEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhh
Confidence            8777    78999999887754 5677888899999999999999777664   999999988765 44333  445566


Q ss_pred             EE--------ECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          448 VD--------FDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       448 i~--------~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +.        |+|||.++++++.+  +++|++      ++.+.   .+  .+.|.+++|+ +|+.
T Consensus       243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~------g~~~~---~~--~~~v~~~~~s-dg~~  295 (582)
T 3o4h_A          243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID------GERVE---AP--QGNHGRVVLW-RGKL  295 (582)
T ss_dssp             HCCSEEEEEEECTTSCEEEEEEETTEEEEEET------TEEEC---CC--SSEEEEEEEE-TTEE
T ss_pred             hhhccccceeEcCCCcEEEEEEcCCcEEEEEE------CCeec---cC--CCceEEEEec-CCEE
Confidence            66        99999888888777  999997      33333   22  4568888888 7764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=1.2e-20  Score=210.53  Aligned_cols=258  Identities=14%  Similarity=0.115  Sum_probs=204.8

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC-CceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..|...+.++.|+++ .++++++.+|.+.+|.+.. +.....+..|. .+...+|+|+|+.|+.+ .++.|.+||...  
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~--  274 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT--  274 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT--
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc--
Confidence            578889999999988 6777888889999997643 44455666565 46778999999988887 488999999843  


Q ss_pred             CcceeEEecc-----------CCcCeEEEEEc-cCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC-CeEEEEE
Q 010669          299 NYDCKHTLKD-----------HTAEVQAVTVH-ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE-GYTSAAF  365 (504)
Q Consensus       299 ~~~~~~~~~~-----------h~~~v~~l~~~-p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~  365 (504)
                        ..+..+..           |...+.+++|+ |+|+++++++ ++.|.+|++..+.... +.     .+.. .+..++|
T Consensus       275 --~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~-----~~~~~~~~~~~~  345 (1045)
T 1k32_A          275 --EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP-----EPLRIRYVRRGG  345 (1045)
T ss_dssp             --CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----CCSCEEEEEECS
T ss_pred             --eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----CCCcceEEeeeE
Confidence              22334443           34578999999 9999999888 7899999998876543 22     3445 7899999


Q ss_pred             CCCCCEEEEEeCCCcEE-EEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCC
Q 010669          366 HPDGLILGTGTSEALVK-IWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET  443 (504)
Q Consensus       366 ~pdg~~l~~g~~dg~I~-iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~  443 (504)
                      + ||+.|++++.++.+. +||+..++... +.+|...+..++|+|||++|++++.++ |++||+.+++.......+  ..
T Consensus       346 s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~--~~  421 (1045)
T 1k32_A          346 D-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR--EA  421 (1045)
T ss_dssp             S-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--SS
T ss_pred             c-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC--CC
Confidence            9 999999998888898 99998776543 347878999999999999999999998 999999998876666444  56


Q ss_pred             CeeEEEECCCCCEEEEEeC------------cEEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          444 PTNSVDFDHSGSYLAVASA------------DIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       444 ~v~~i~~~~~g~~l~~~~~------------di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .+.+++|+|||++|++++.            .+++|++    ..++ +..+..|  ...+..+.|+|+|+.
T Consensus       422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~----~~g~-~~~l~~~--~~~~~~~~~spdG~~  485 (1045)
T 1k32_A          422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM----EGRK-IFAATTE--NSHDYAPAFDADSKN  485 (1045)
T ss_dssp             CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET----TTTE-EEECSCS--SSBEEEEEECTTSCE
T ss_pred             CccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC----CCCc-EEEeeCC--CcccCCceEcCCCCE
Confidence            7899999999999988754            2999998    4444 6677777  677889999999974

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=4.4e-21  Score=192.61  Aligned_cols=217  Identities=12%  Similarity=0.146  Sum_probs=163.1

Q ss_pred             CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC-------CCcceeE-----EeccCCcC
Q 010669          245 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED-------GNYDCKH-----TLKDHTAE  312 (504)
Q Consensus       245 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~-----~~~~h~~~  312 (504)
                      +.+++|+... .      .+...++.+++++++.++++++.|+ +++|+....       .......     ....+...
T Consensus        23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            4688876531 1      1344689999999999999999988 888864310       0000011     11135678


Q ss_pred             eEEEEEccCCCEEE----EEeCCCeEEEEECCCC--------eEEEEeecCCCCCCCCCeEEEEECCC-CCEEEEEeCCC
Q 010669          313 VQAVTVHATNKYFV----TASLDNTWCFYDLSSG--------ICLTQVSDAGTDGRPEGYTSAAFHPD-GLILGTGTSEA  379 (504)
Q Consensus       313 v~~l~~~p~~~~l~----s~s~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~pd-g~~l~~g~~dg  379 (504)
                      |.+++|+|++++|+    +|+.|+.|++||++++        +.+..+..  ..+|...|.+++|+|+ +.+|++++.||
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL--LKDAGGMVIDMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC--CCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec--cCCCCCceEEEEECCCCCCEEEEEECCC
Confidence            99999999999999    7888999999998764        22222221  2367889999999997 89999999999


Q ss_pred             cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC-----CCCCeeEEEECCC
Q 010669          380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-----SETPTNSVDFDHS  453 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~-----~~~~v~~i~~~~~  453 (504)
                      .|++||++++..+....+|...|++++|+|+|.+|++|+.|+ |++||++ ++....+..+.     +...+.++.|+++
T Consensus       173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~  251 (434)
T 2oit_A          173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT  251 (434)
T ss_dssp             CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred             eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC
Confidence            999999999877777778889999999999999999999998 9999998 55555554332     1237899999999


Q ss_pred             CCEEEEEe-Cc--------EEEEEeecc
Q 010669          454 GSYLAVAS-AD--------IRVYQVASV  472 (504)
Q Consensus       454 g~~l~~~~-~d--------i~vw~~~~~  472 (504)
                      +.++++.+ .+        +++|++...
T Consensus       252 ~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          252 YVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ceEEEEEccCCCccCCCCceEEEEeccC
Confidence            98886543 21        889998653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=1.5e-19  Score=176.11  Aligned_cols=254  Identities=11%  Similarity=0.102  Sum_probs=172.9

Q ss_pred             CCcEEEEcC--CCCceEE-EcccCccceeEEEEeeCCCEEEEEeC---CCcEEEEeCCCCCCcceeEEeccCCcCeEEEE
Q 010669          244 DTNAVLFDR--PSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT  317 (504)
Q Consensus       244 dg~i~vwd~--~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~  317 (504)
                      ++.|.+|++  .+++... ....+...+..++|+|+|+ |++++.   ++.|.+|++.++ ....+..+..+...+..++
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ-TAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT-EEEEEEEEEEESCCCSEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC-cEEEeeeeecCCCCCEEEE
Confidence            455777765  4555432 2334556788899999999 555544   689999999653 3334455455677889999


Q ss_pred             EccCCCEEEEEe-CCCeEEEEECCC-Ce--EEEEeecCCCC----CCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC-C
Q 010669          318 VHATNKYFVTAS-LDNTWCFYDLSS-GI--CLTQVSDAGTD----GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK-S  388 (504)
Q Consensus       318 ~~p~~~~l~s~s-~dg~i~iwd~~~-~~--~~~~~~~~~~~----~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~-~  388 (504)
                      |+|+|++|++++ .++.|.+||+.. +.  .+..+...+..    .....+.+++|+|||++++++..++.|++||+. +
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence            999999888888 689999999963 22  22332211110    012358899999999977777778999999998 4


Q ss_pred             Ccee--eeeeCC-CCCeEEEEEcCCCcEEEEEeC-Cc-EEEEEcCC--Ccc--eeeeecCCC----CCCeeEEEECCCCC
Q 010669          389 QANV--AKFDGH-VGAVTAISFSENGYYLATAAH-DG-VKLWDLRK--LKN--FRSFESSDS----ETPTNSVDFDHSGS  455 (504)
Q Consensus       389 ~~~~--~~~~~~-~~~i~~l~~s~~g~~l~s~~~-d~-v~vwd~~~--~~~--~~~~~~~~~----~~~v~~i~~~~~g~  455 (504)
                      ++..  ..+..+ ...+..++|+|||++|++++. ++ |.+|++..  ++.  ...+.....    ...+..++|+|+|+
T Consensus       173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~  252 (347)
T 3hfq_A          173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH  252 (347)
T ss_dssp             SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred             CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence            5432  222222 236788999999997777654 45 99999874  332  222322211    14588899999999


Q ss_pred             EEEEEeC-c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          456 YLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       456 ~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +|++++. +  |.+|++... .....+..+..+  ...+.+++|+|+|+.
T Consensus       253 ~l~v~~~~~~~v~v~~~~~~-g~~~~~~~~~~~--~~~~~~~~~spdg~~  299 (347)
T 3hfq_A          253 FLYVSNRGYNTLAVFAVTAD-GHLTLIQQISTE--GDFPRDFDLDPTEAF  299 (347)
T ss_dssp             EEEEEEETTTEEEEEEECGG-GCEEEEEEEECS--SSCCCEEEECTTSSE
T ss_pred             EEEEEeCCCCEEEEEEECCC-CcEEEeEEEecC--CCCcCeEEECCCCCE
Confidence            8865543 3  999999532 245677777776  567899999999973

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=3.4e-20  Score=206.84  Aligned_cols=260  Identities=13%  Similarity=0.053  Sum_probs=197.2

Q ss_pred             CCCCeEEEEec-cCCCEEEEEeCCCcEEEEcCCCCceEEEcccCcc-ceeEEEEeeCCCEEEEEeCCCcEE-EEeCCCCC
Q 010669          222 SKPGIVSLDIH-YSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLFLTGSADKTVR-VWQGSEDG  298 (504)
Q Consensus       222 ~~~~I~~~~~s-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~s~dg~i~-iwd~~~~~  298 (504)
                      |...+.+++|+ |+|++|++++ ++.|.+|+..+++.. .+..|.. .+..++|+ +|+.|++++.++.+. +||+.++ 
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-  369 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-  369 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC-
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC-
Confidence            34468999999 9999998887 789999999877654 4666777 89999999 999999999888888 8998764 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                        . ...+.+|...+..++|+|+|++|++++.++.|++||+.+++......     .|...+.+++|+|||++|++++.+
T Consensus       370 --~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-----~~~~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          370 --K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-----SREAMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             --C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             --C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-----CCCCCccceEECCCCCeEEEEecC
Confidence              2 23444788899999999999999999999999999999998776654     455678999999999999888765


Q ss_pred             C----------cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc---------------
Q 010669          379 A----------LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN---------------  432 (504)
Q Consensus       379 g----------~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~---------------  432 (504)
                      +          .|++||+.+++ +..+..|...+..++|+|+|++|++++.++ ..+|+......               
T Consensus       442 ~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (1045)
T 1k32_A          442 KHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP  520 (1045)
T ss_dssp             CSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST
T ss_pred             ccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCC
Confidence            4          89999998877 667777888899999999999999988765 66676432211               


Q ss_pred             --------------------------eeeeecCCCCCCeeEEEECCCCCEEEE-----------EeC--cEEEEEeeccC
Q 010669          433 --------------------------FRSFESSDSETPTNSVDFDHSGSYLAV-----------ASA--DIRVYQVASVK  473 (504)
Q Consensus       433 --------------------------~~~~~~~~~~~~v~~i~~~~~g~~l~~-----------~~~--di~vw~~~~~~  473 (504)
                                                ........+...+..++|+|+|.++++           .+.  ...+|.++.  
T Consensus       521 ~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~--  598 (1045)
T 1k32_A          521 GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV--  598 (1045)
T ss_dssp             TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEET--
T ss_pred             CCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEEC--
Confidence                                      000111112456789999999987875           111  244444433  


Q ss_pred             ccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          474 ADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       474 ~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .+.+. ..+.     ..+.+++|+|+|+.
T Consensus       599 ~~~~~-~~l~-----~~v~~~~~S~DG~~  621 (1045)
T 1k32_A          599 KTRKV-TEVK-----NNLTDLRLSADRKT  621 (1045)
T ss_dssp             TTCCE-EEEE-----EEEEEEEECTTSCE
T ss_pred             CCCcE-EEee-----cCcceEEECCCCCE
Confidence            22222 2222     35788999999974

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=3.5e-20  Score=198.26  Aligned_cols=241  Identities=11%  Similarity=0.106  Sum_probs=179.7

Q ss_pred             CCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCC-----CceEEEcccCccc--------------eeEEEEeeCCCEEEE
Q 010669          222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-----GQIVTTLSGHSKK--------------VTSVKFVTEGDLFLT  282 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~-----~~~~~~~~~h~~~--------------v~~l~~s~~~~~l~s  282 (504)
                      +...+.+++|+|||++|+++ .++.|++|++.+     ++.......+...              +.++.|+|||++|++
T Consensus       119 ~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~  197 (706)
T 2z3z_A          119 TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAF  197 (706)
T ss_dssp             CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEE
T ss_pred             CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEE
Confidence            45568889999999999985 689999999998     7766655444443              489999999999998


Q ss_pred             Ee---------------------------------CCCcEEEEeCCCCCCcceeEEe--ccCCcCeEEEEEccCCCEEEE
Q 010669          283 GS---------------------------------ADKTVRVWQGSEDGNYDCKHTL--KDHTAEVQAVTVHATNKYFVT  327 (504)
Q Consensus       283 ~s---------------------------------~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~l~s  327 (504)
                      ++                                 .++.|.+||+.++   ......  ..|...+.+++|+|+|++|++
T Consensus       198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~---~~~~~~~~~~~~~~~~~~~~spdg~~l~~  274 (706)
T 2z3z_A          198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG---KTVYLQTGEPKEKFLTNLSWSPDENILYV  274 (706)
T ss_dssp             EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT---EEEECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred             EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC---ceEeeccCCCCceeEeeEEEECCCCEEEE
Confidence            87                                 4578999999874   222222  246678999999999999999


Q ss_pred             EeCCC-----eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEEcC-CCceeeeeeCCC
Q 010669          328 ASLDN-----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVK-SQANVAKFDGHV  399 (504)
Q Consensus       328 ~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg~I~iwd~~-~~~~~~~~~~~~  399 (504)
                      ++.++     .|.+||+.+++....+...........+.+++|+|  ||+++++++.+|.++||++. ++..+..+..+.
T Consensus       275 ~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~  354 (706)
T 2z3z_A          275 AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE  354 (706)
T ss_dssp             EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred             EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence            88776     89999999983333332110111112346789999  99999999999999999886 667777787777


Q ss_pred             CCeEE-EEEcCCCcEEEEEeCC-----c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc------EEE
Q 010669          400 GAVTA-ISFSENGYYLATAAHD-----G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD------IRV  466 (504)
Q Consensus       400 ~~i~~-l~~s~~g~~l~s~~~d-----~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d------i~v  466 (504)
                      ..+.. ++|+|+|..|+.++.+     . |..||+.++. ...+.   +...+.+++|+|+|++++..+.+      +.+
T Consensus       355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l  430 (706)
T 2z3z_A          355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTV  430 (706)
T ss_dssp             SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEE
T ss_pred             eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEE
Confidence            77877 7999999887665543     2 6677777655 33333   24568999999999988876432      888


Q ss_pred             EEee
Q 010669          467 YQVA  470 (504)
Q Consensus       467 w~~~  470 (504)
                      |++.
T Consensus       431 ~d~~  434 (706)
T 2z3z_A          431 TNIG  434 (706)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            9873

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=3.2e-20  Score=198.96  Aligned_cols=254  Identities=13%  Similarity=0.089  Sum_probs=179.5

Q ss_pred             EEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCcc---ceeEEEEeeCCCEEEEEeC---------CCcEEEEeCC
Q 010669          228 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK---KVTSVKFVTEGDLFLTGSA---------DKTVRVWQGS  295 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~s~---------dg~i~iwd~~  295 (504)
                      ++.|+|+|.++++ +.||.|++||+.+++....+.+|..   .+.+++|||||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6789999965555 4699999999999988777766554   4899999999999998876         7899999998


Q ss_pred             CCCCccee--EEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC---------------
Q 010669          296 EDGNYDCK--HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE---------------  358 (504)
Q Consensus       296 ~~~~~~~~--~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------------  358 (504)
                      ++   ...  ..+   ...+..++|+|||+.|+.+. ++.|++||+.+++.......    ++..               
T Consensus        99 ~g---~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~----~~~~~v~~g~~~~v~~ee~  167 (719)
T 1z68_A           99 NG---EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN----GRENKIFNGIPDWVYEEEM  167 (719)
T ss_dssp             TT---EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC----CBTTTEEESSCCHHHHHHT
T ss_pred             CC---ccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC----CCcCCeEcccccceeeeec
Confidence            75   221  122   25688999999999999886 78999999998876543211    2111               


Q ss_pred             --CeEEEEECCCCCEEEEEeCCC----------------------------------cEEEEEcCCCcee--------ee
Q 010669          359 --GYTSAAFHPDGLILGTGTSEA----------------------------------LVKIWDVKSQANV--------AK  394 (504)
Q Consensus       359 --~v~~~~~~pdg~~l~~g~~dg----------------------------------~I~iwd~~~~~~~--------~~  394 (504)
                        ...+++|+|||+.|++++.|.                                  .|++||+.+++..        ..
T Consensus       168 ~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  247 (719)
T 1z68_A          168 LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM  247 (719)
T ss_dssp             TCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred             ccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence              125899999999999987552                                  7889999887643        22


Q ss_pred             eeCCCCCeEEEEEcCCCcEEEEEeC--C--c-EEEEE----cCCCcceeeee----cCCCCCCee-----EEEECCCCCE
Q 010669          395 FDGHVGAVTAISFSENGYYLATAAH--D--G-VKLWD----LRKLKNFRSFE----SSDSETPTN-----SVDFDHSGSY  456 (504)
Q Consensus       395 ~~~~~~~i~~l~~s~~g~~l~s~~~--d--~-v~vwd----~~~~~~~~~~~----~~~~~~~v~-----~i~~~~~g~~  456 (504)
                      +.+|...+..++|+||++++++...  +  . |.+||    +.+++....+.    .+  ...+.     .+.|+|+|+.
T Consensus       248 ~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~  325 (719)
T 1z68_A          248 IASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR--TGWAGGFFVSTPVFSYDAIS  325 (719)
T ss_dssp             HHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS--SSCSSSSSCCCCEECTTSSC
T ss_pred             CCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC--CceEccccCCccEECCCCCe
Confidence            3457788999999999987777442  2  2 88999    77776655442    22  34454     7899999996


Q ss_pred             EEE--EeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          457 LAV--ASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       457 l~~--~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      ++.  +..+  .+||-++...  .. ...+..+  ...+..+.++ +|+
T Consensus       326 l~~~~~~~~g~~~l~~~~~~~--~~-~~~lt~~--~~~v~~~~~~-d~~  368 (719)
T 1z68_A          326 YYKIFSDKDGYKHIHYIKDTV--EN-AIQITSG--KWEAINIFRV-TQD  368 (719)
T ss_dssp             EEEEEECTTSCEEEEEESSCS--TT-CEECSCS--SSCEEEEEEE-CSS
T ss_pred             EEEEEEccCCceEEEEEECCC--Cc-eEecccC--ceEEEEEEEE-eCC
Confidence            654  3333  4555443222  22 3445444  4456666665 443

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.84  E-value=1.6e-21  Score=135.32  Aligned_cols=56  Identities=46%  Similarity=0.814  Sum_probs=53.2

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccccCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTG   56 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~   56 (504)
                      |+|+||+++|++||++|.||++|||++|++||+++|+||+||++|+.+||||++..
T Consensus         4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~   59 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS   59 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred             EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence            68999999999999996699999999999999999999999999999999999753

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=1.8e-18  Score=169.35  Aligned_cols=263  Identities=13%  Similarity=0.147  Sum_probs=176.3

Q ss_pred             CCEEEEEe----CCCcEEEEcC--CCCceEEEcccCccceeEEEEeeCCCEEEEEeCC----CcEEEEeCCCC-CCccee
Q 010669          235 KDVIATGG----VDTNAVLFDR--PSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD----KTVRVWQGSED-GNYDCK  303 (504)
Q Consensus       235 ~~~l~sg~----~dg~i~vwd~--~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d----g~i~iwd~~~~-~~~~~~  303 (504)
                      ..++++|+    .++.|++|++  .+++.......+...+..++|+|++++|++++.+    +.|.+|++... +....+
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            34556664    3567888865  4555433222266778889999999999998886    79999998764 333444


Q ss_pred             EEeccCCcCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCeEEEEe----ecCCC-----CCCCCCeEEEEECCCCCEEE
Q 010669          304 HTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQV----SDAGT-----DGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       304 ~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~----~~~~~-----~~~~~~v~~~~~~pdg~~l~  373 (504)
                      .....+......+++  +++++++++ .++.|.+|++.....+..+    ...+.     ..+...+.+++|+|||++++
T Consensus        93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~  170 (361)
T 3scy_A           93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL  170 (361)
T ss_dssp             EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred             eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence            444445566778888  788777776 5889999999754322111    11000     01123468899999999665


Q ss_pred             EEe-CCCcEEEEEcCCCce------e-------eeeeCCCCCeEEEEEcCCCcEEEEEeC-Cc-EEEEEcCCCcc--eee
Q 010669          374 TGT-SEALVKIWDVKSQAN------V-------AKFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKN--FRS  435 (504)
Q Consensus       374 ~g~-~dg~I~iwd~~~~~~------~-------~~~~~~~~~i~~l~~s~~g~~l~s~~~-d~-v~vwd~~~~~~--~~~  435 (504)
                      +++ .++.|++|++.....      +       .....+...+..++|+|+|++|++++. ++ |.+||+.++..  +..
T Consensus       171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~  250 (361)
T 3scy_A          171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT  250 (361)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence            554 588999999875431      1       111234456889999999998888774 55 99999986643  222


Q ss_pred             eecC-CCCCCeeEEEECCCCCEEEEEe-C--c-EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          436 FESS-DSETPTNSVDFDHSGSYLAVAS-A--D-IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       436 ~~~~-~~~~~v~~i~~~~~g~~l~~~~-~--d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +... .+......++|+|+|++|++++ .  + +.+|+++........+..+..   ...+.+++|+|+|+.
T Consensus       251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~  319 (361)
T 3scy_A          251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKY  319 (361)
T ss_dssp             EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCE
T ss_pred             EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCE
Confidence            3221 1234568999999999986654 3  3 999999643344556666654   346789999999973

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=2.4e-18  Score=168.90  Aligned_cols=242  Identities=14%  Similarity=0.133  Sum_probs=168.9

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCC-CCceEEEcccC-ccceeEEEEeeCCCE--EEEEe-------------CC
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRP-SGQIVTTLSGH-SKKVTSVKFVTEGDL--FLTGS-------------AD  286 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h-~~~v~~l~~s~~~~~--l~s~s-------------~d  286 (504)
                      ..+..++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++|+|+|++  +++++             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            357789999999999998887 99999987 77664433211 123567899999994  45553             68


Q ss_pred             CcEEEEeCCCCCCcceeEEec----cCCcCeEEEEEccCCCEEEEEeC-CCeEEEEECC-CCeEEEEeecCCCCCCCCCe
Q 010669          287 KTVRVWQGSEDGNYDCKHTLK----DHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLS-SGICLTQVSDAGTDGRPEGY  360 (504)
Q Consensus       287 g~i~iwd~~~~~~~~~~~~~~----~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v  360 (504)
                      |++.+|++...+  .....+.    .+...+.+++|+|+|+++++++. ++.|.+||+. +++........ ...+...+
T Consensus       119 g~v~v~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~g~~p  195 (365)
T 1jof_A          119 GYGNVFSVSETG--KLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-APDPGDHP  195 (365)
T ss_dssp             CEEEEEEECTTC--CEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-CSSTTCCE
T ss_pred             ceEEEEccCCCC--cCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe-cCCCCCCC
Confidence            999999997533  2222222    24567999999999998887764 6799999998 67643221110 10123568


Q ss_pred             EEEEECCCCCEEEEEeC-CCcEEEEEcC--CCcee---eee---e----CCCC------CeEEEE-EcCCCcEEEEEe--
Q 010669          361 TSAAFHPDGLILGTGTS-EALVKIWDVK--SQANV---AKF---D----GHVG------AVTAIS-FSENGYYLATAA--  418 (504)
Q Consensus       361 ~~~~~~pdg~~l~~g~~-dg~I~iwd~~--~~~~~---~~~---~----~~~~------~i~~l~-~s~~g~~l~s~~--  418 (504)
                      ..++|+|||+++++++. ++.|.+|++.  +++..   ..+   .    +|..      .+..++ |+|||++|++++  
T Consensus       196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            99999999998887765 6899999875  45432   112   1    1222      488999 999999887764  


Q ss_pred             CC-----cEEEEEcC-CCcceee---eecCCCCCCeeEEEECC---CCCEEEEEeCc---EEEEEeec
Q 010669          419 HD-----GVKLWDLR-KLKNFRS---FESSDSETPTNSVDFDH---SGSYLAVASAD---IRVYQVAS  471 (504)
Q Consensus       419 ~d-----~v~vwd~~-~~~~~~~---~~~~~~~~~v~~i~~~~---~g~~l~~~~~d---i~vw~~~~  471 (504)
                      .+     .|.+|++. +++....   ....  ...+..++|+|   +|++|++++.+   |.+|+++.
T Consensus       276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            23     59999996 5554321   2222  34567789999   89999998754   99999854

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=1.5e-18  Score=186.43  Aligned_cols=234  Identities=11%  Similarity=0.107  Sum_probs=169.1

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccc-----eeEEEEeeCCCEEEEEeCC---------CcEE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK-----VTSVKFVTEGDLFLTGSAD---------KTVR  290 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-----v~~l~~s~~~~~l~s~s~d---------g~i~  290 (504)
                      ...++.|+|||.+++++  ||.|++||+.+++....+.+|...     ...+.|||||++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            35689999999998886  899999999999988777777643     2448899999999988876         5667


Q ss_pred             EEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC------------
Q 010669          291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE------------  358 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------  358 (504)
                      +||+.++   . ...+..|.+.+...+|+|||+.|+.+. |+.|++||+.++........    ++..            
T Consensus        96 ~~d~~~~---~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~----g~~~~~~~g~~~~v~~  166 (740)
T 4a5s_A           96 IYDLNKR---Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWT----GKEDIIYNGITDWVYE  166 (740)
T ss_dssp             EEETTTT---E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSC----CBTTTEEESBCCHHHH
T ss_pred             EEECCCC---c-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCC----CCccceecCccccccc
Confidence            9999885   2 334567778899999999999999884 68999999998875433221    2111            


Q ss_pred             -----CeEEEEECCCCCEEEEEeCCC------------------------------------cEEEEEcCC---Cc--ee
Q 010669          359 -----GYTSAAFHPDGLILGTGTSEA------------------------------------LVKIWDVKS---QA--NV  392 (504)
Q Consensus       359 -----~v~~~~~~pdg~~l~~g~~dg------------------------------------~I~iwd~~~---~~--~~  392 (504)
                           ....+.|+|||+.|+.++.|.                                    .|++||+.+   ++  ..
T Consensus       167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~  246 (740)
T 4a5s_A          167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS  246 (740)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred             chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence                 223589999999998875321                                    488899988   63  22


Q ss_pred             eeee------CCCCCeEEEEEcCCCcEEEEEeC----Cc-EEEEEcCCCc----c--eeeeecCCCCCCee-----EEEE
Q 010669          393 AKFD------GHVGAVTAISFSENGYYLATAAH----DG-VKLWDLRKLK----N--FRSFESSDSETPTN-----SVDF  450 (504)
Q Consensus       393 ~~~~------~~~~~i~~l~~s~~g~~l~s~~~----d~-v~vwd~~~~~----~--~~~~~~~~~~~~v~-----~i~~  450 (504)
                      ..+.      +|...+..++|+|||++++....    +. |.+||+.+++    +  +..+....+...+.     .+.|
T Consensus       247 ~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f  326 (740)
T 4a5s_A          247 IQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF  326 (740)
T ss_dssp             EEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred             EEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence            2333      37778999999999997665532    23 9999998877    2  22221111233333     7889


Q ss_pred             CCCCCEEE-EEeCc-----EEEEEe
Q 010669          451 DHSGSYLA-VASAD-----IRVYQV  469 (504)
Q Consensus       451 ~~~g~~l~-~~~~d-----i~vw~~  469 (504)
                      +|||+.++ ..+..     |.+|+.
T Consensus       327 spDG~~l~~~~s~~~G~~~l~~~~~  351 (740)
T 4a5s_A          327 TLDGNSFYKIISNEEGYRHICYFQI  351 (740)
T ss_dssp             CTTSSEEEEEEECTTSCEEEEEEET
T ss_pred             cCCCCEEEEEEEcCCCceEEEEEEC
Confidence            99999877 66543     666665

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=2.7e-19  Score=191.76  Aligned_cols=267  Identities=9%  Similarity=0.056  Sum_probs=180.6

Q ss_pred             CeEEEEeccCCCEEEEEeC---------CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          225 GIVSLDIHYSKDVIATGGV---------DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~---------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      .|.+++|||||++|++++.         ++.|++||+.+++.+.... ....+..++|||||+.|+.+. ++.|++|++.
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~  138 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP  138 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence            4789999999999998876         7899999999887621111 135689999999999999886 7899999997


Q ss_pred             CCCCcceeEE-eccCCcCe-----------------EEEEEccCCCEEEEEeCCC-------------------------
Q 010669          296 EDGNYDCKHT-LKDHTAEV-----------------QAVTVHATNKYFVTASLDN-------------------------  332 (504)
Q Consensus       296 ~~~~~~~~~~-~~~h~~~v-----------------~~l~~~p~~~~l~s~s~dg-------------------------  332 (504)
                      ++.   .... ..++...|                 .++.|+|||++|++++.|.                         
T Consensus       139 ~g~---~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp  215 (719)
T 1z68_A          139 GDP---PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP  215 (719)
T ss_dssp             TSC---CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred             CCC---cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence            753   2221 12332222                 4899999999999988652                         


Q ss_pred             ---------eEEEEECCCCeEE--EEeec-CCCCCCCCCeEEEEECCCCCEEEEEeCC----CcEEEEE----cCCCcee
Q 010669          333 ---------TWCFYDLSSGICL--TQVSD-AGTDGRPEGYTSAAFHPDGLILGTGTSE----ALVKIWD----VKSQANV  392 (504)
Q Consensus       333 ---------~i~iwd~~~~~~~--~~~~~-~~~~~~~~~v~~~~~~pdg~~l~~g~~d----g~I~iwd----~~~~~~~  392 (504)
                               .|++||+.+++..  ..+.. ....++...+..++|+||++++++....    ..|.+||    +.+++..
T Consensus       216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~  295 (719)
T 1z68_A          216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP  295 (719)
T ss_dssp             BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred             CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence                     7889999887642  11110 0011356678999999998887775433    2488999    8777766


Q ss_pred             eee----eCCCCCeE-----EEEEcCCCcEEEE--EeCCc---EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669          393 AKF----DGHVGAVT-----AISFSENGYYLAT--AAHDG---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA  458 (504)
Q Consensus       393 ~~~----~~~~~~i~-----~l~~s~~g~~l~s--~~~d~---v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~  458 (504)
                      ..+    .+|.+.+.     .+.|+|||..|+.  +..++   |.+||+.+++ ...+...  ...+..+.+. +++.|+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~--~~~v~~~~~~-d~~~i~  371 (719)
T 1z68_A          296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG--KWEAINIFRV-TQDSLF  371 (719)
T ss_dssp             GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS--SSCEEEEEEE-CSSEEE
T ss_pred             EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC--ceEEEEEEEE-eCCEEE
Confidence            555    46777676     8899999986554  43443   8888887765 3334332  3457777777 777766


Q ss_pred             EEeCc-------EEEEEeeccCcc--ceeEEE-ccCCCCCCceeEEEEeecCcc
Q 010669          459 VASAD-------IRVYQVASVKAD--WNCIKT-FPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       459 ~~~~d-------i~vw~~~~~~~~--~~~i~~-~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ..+.+       .++|.+......  ..++.. +.+|  ...+..+.|+++|+.
T Consensus       372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~--~~~~~~~~~s~dg~~  423 (719)
T 1z68_A          372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKE--RCQYYTASFSDYAKY  423 (719)
T ss_dssp             EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTT--TBCBEEEEECGGGSS
T ss_pred             EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCC--CCceEEEEECCCCCE
Confidence            65532       899998542211  122211 2224  456778888888763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.81  E-value=2.1e-17  Score=159.80  Aligned_cols=244  Identities=13%  Similarity=0.163  Sum_probs=183.8

Q ss_pred             CCCeEEEEeccCCCEEEEEeCC------------------------CcEEEEcCCCCceEEEcc-cCccceeEEEEeeCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVD------------------------TNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEG  277 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~d------------------------g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~  277 (504)
                      -..+.+++++++|+++++...+                        +.|.+||..+++.+..+. ++-.....++++++|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4569999999999999988877                        479999999898876664 445678999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCcceeEEe---------ccCCcCeEEEEEcc-CCCEEEEEe-CCCeEEEEECCCCeEEE
Q 010669          278 DLFLTGSADKTVRVWQGSEDGNYDCKHTL---------KDHTAEVQAVTVHA-TNKYFVTAS-LDNTWCFYDLSSGICLT  346 (504)
Q Consensus       278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------~~h~~~v~~l~~~p-~~~~l~s~s-~dg~i~iwd~~~~~~~~  346 (504)
                      +++++...++.|++||.....  ..+..+         ..+......++++| ++.++++.+ .++.|.+|| .++..+.
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~--~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~  179 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKE--GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT  179 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSS--CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCe--EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence            988888889999999976421  133443         23445689999999 788888876 689999999 5566665


Q ss_pred             EeecCCC-----CCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeee--CCCCCeEEEEEcCCCcEEEEEe
Q 010669          347 QVSDAGT-----DGRPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATAA  418 (504)
Q Consensus       347 ~~~~~~~-----~~~~~~v~~~~~~pd-g~~l~~g~~dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~~  418 (504)
                      .+...+.     .++......++++|+ +.++++...++.|++||..+++.+..+.  .+...+..++|+| |..+++.+
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g  258 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG  258 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence            5532211     122234789999998 7888888889999999998888888774  3556788999999 44443332


Q ss_pred             -------CCc-EEEEEcCCCcceeeeec-CCCCCCeeEEEECCCCCEEEEEeCc--EEEEEee
Q 010669          419 -------HDG-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA  470 (504)
Q Consensus       419 -------~d~-v~vwd~~~~~~~~~~~~-~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~  470 (504)
                             .+. |++||+.+++.+..+.. ..+...+..++++|+|.++++...+  |++|++.
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence                   233 99999999988877742 1224568999999999666666555  8888873

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=3.2e-18  Score=169.12  Aligned_cols=257  Identities=12%  Similarity=0.030  Sum_probs=176.0

Q ss_pred             EEeccCCCEEEEEeC-CC--cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEE
Q 010669          229 LDIHYSKDVIATGGV-DT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       229 ~~~s~~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  305 (504)
                      .+|+|||++|+.++. +|  .|.+||+.+++......++...+..+.|+|||+.|+.++.++.|.+||+.++   .....
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g---~~~~~  117 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL---EENVV  117 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC---CEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC---cceee
Confidence            789999999988887 66  4888899988887777777766667889999999999999999999999885   33333


Q ss_pred             eccCCcCeEEEE--EccCCCEEEEE----------------------eCCCeEEEEECCCCeEEEEeecCCCCCCCCCeE
Q 010669          306 LKDHTAEVQAVT--VHATNKYFVTA----------------------SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT  361 (504)
Q Consensus       306 ~~~h~~~v~~l~--~~p~~~~l~s~----------------------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  361 (504)
                      +..+...+....  ++|++.+++..                      ..++.|.+||+.+++......      +...+.
T Consensus       118 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~------~~~~~~  191 (388)
T 3pe7_A          118 YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ------ENQWLG  191 (388)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE------ESSCEE
T ss_pred             eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec------CCcccc
Confidence            444545454443  48899988743                      234689999999987654443      234688


Q ss_pred             EEEECC-CCCEEEEEeCC------CcEEEEEcCCCceeeeeeCCC--CCeEEEEEcCCCcEEEEEeCC----c--EEEEE
Q 010669          362 SAAFHP-DGLILGTGTSE------ALVKIWDVKSQANVAKFDGHV--GAVTAISFSENGYYLATAAHD----G--VKLWD  426 (504)
Q Consensus       362 ~~~~~p-dg~~l~~g~~d------g~I~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~g~~l~s~~~d----~--v~vwd  426 (504)
                      .++|+| ||+.|+....+      ..|.++|+..+... .+..+.  ..+..+.|+|||+.|+..+..    .  |++||
T Consensus       192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  270 (388)
T 3pe7_A          192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSAD  270 (388)
T ss_dssp             EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEEC
T ss_pred             ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEe
Confidence            999999 99988877653      37888887655433 333333  257889999999977654431    2  99999


Q ss_pred             cCCCcceeeeecCCCC---CCeeEEEECCCCCEEEEE---------eCc--EEEEEeeccCccceeEEEccCCCCCC---
Q 010669          427 LRKLKNFRSFESSDSE---TPTNSVDFDHSGSYLAVA---------SAD--IRVYQVASVKADWNCIKTFPDLSGTG---  489 (504)
Q Consensus       427 ~~~~~~~~~~~~~~~~---~~v~~i~~~~~g~~l~~~---------~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~---  489 (504)
                      +.+++...........   .....+.|+|+|+.|+..         ..+  |.+|++    ..++ +..+..|  ..   
T Consensus       271 ~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~----~~~~-~~~l~~~--~~~~~  343 (388)
T 3pe7_A          271 PETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM----KNGT-QHRVARH--DTSWK  343 (388)
T ss_dssp             TTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET----TTTE-EEEEEEC--CCCCC
T ss_pred             cCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec----cCCc-eEEeccc--cCccc
Confidence            9988743322221100   001223799999988753         222  888887    3333 3444444  23   


Q ss_pred             --------ceeEEEEeecCcc
Q 010669          490 --------AASFLFLFVLGQT  502 (504)
Q Consensus       490 --------~v~~l~~~~~g~~  502 (504)
                              .+.+++|+|+|+.
T Consensus       344 ~~~~~~~~~~~~~~~spDg~~  364 (388)
T 3pe7_A          344 VFEGDRQVTHPHPSFTPDDKQ  364 (388)
T ss_dssp             CBTTBSSTTCCCCEECTTSSE
T ss_pred             ccccccccCCCCccCCCCCCE
Confidence                    4788899999963

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=9.4e-17  Score=151.68  Aligned_cols=238  Identities=13%  Similarity=0.202  Sum_probs=178.3

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc------cCccceeEEEEe-eCCCEEEEEeC-CCcEEEE
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS------GHSKKVTSVKFV-TEGDLFLTGSA-DKTVRVW  292 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~------~h~~~v~~l~~s-~~~~~l~s~s~-dg~i~iw  292 (504)
                      ++-....+++++++++++++...++.|.+||.. ++.+..+.      ++...+.++++. +++.++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            345678999999999998888889999999987 66666653      244578999995 67766666543 7899999


Q ss_pred             eCCCCCCcceeEEec-cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669          293 QGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI  371 (504)
Q Consensus       293 d~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~  371 (504)
                      |...    .....+. .+...+.+++++|+|+++++...++.|.+||.. ++....+...   .+...+..++++++|++
T Consensus       106 d~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~---~~~~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          106 NQYG----QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS---KHLEFPNGVVVNDKQEI  177 (286)
T ss_dssp             CTTS----CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT---TTCSSEEEEEECSSSEE
T ss_pred             CCCC----cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCC---CccCCcEEEEECCCCCE
Confidence            9433    3444443 344578999999999988888888999999965 4445444321   23346899999999998


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeCC--CCCeEEEEEcCCCcEEEEEeCC--cEEEEEcCCCcceeeeecCCCCCCeeE
Q 010669          372 LGTGTSEALVKIWDVKSQANVAKFDGH--VGAVTAISFSENGYYLATAAHD--GVKLWDLRKLKNFRSFESSDSETPTNS  447 (504)
Q Consensus       372 l~~g~~dg~I~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~g~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~~v~~  447 (504)
                      +++...++.|++||. .++.+..+..+  ...+..++++++|.++++...+  .|.+||. +++.+..+..+.....+.+
T Consensus       178 ~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~  255 (286)
T 1q7f_A          178 FISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD  255 (286)
T ss_dssp             EEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred             EEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCccee
Confidence            888888999999997 45566666433  3578999999999988888765  4999995 5666666665433345789


Q ss_pred             EEECCCCCEEEEEeCc-EEEEEe
Q 010669          448 VDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       448 i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                      ++++|+|+++++.... |++|++
T Consensus       256 i~~~~~g~l~vs~~~~~v~v~~~  278 (286)
T 1q7f_A          256 VALMDDGSVVLASKDYRLYIYRY  278 (286)
T ss_dssp             EEEETTTEEEEEETTTEEEEEEC
T ss_pred             EEECCCCcEEEECCCCeEEEEEc
Confidence            9999999877774333 999997

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.81  E-value=3.4e-18  Score=164.99  Aligned_cols=206  Identities=10%  Similarity=0.083  Sum_probs=161.4

Q ss_pred             CeEEEEeccCCCEE-EEEeCCCcEEEEcCCCCceEEEccc-C----ccceeEEEEeeCCCEEEEEe------------CC
Q 010669          225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSG-H----SKKVTSVKFVTEGDLFLTGS------------AD  286 (504)
Q Consensus       225 ~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~-h----~~~v~~l~~s~~~~~l~s~s------------~d  286 (504)
                      .+..++|+|+|+++ ++++.++.|.+||+.+++.+..+.. +    ...+.+++|+|+++++++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            36789999999865 5556688999999999988876653 2    23678899999999888886            57


Q ss_pred             CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC-C-----------
Q 010669          287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT-D-----------  354 (504)
Q Consensus       287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~-----------  354 (504)
                      +.|.+||+.++   .....+.. ...+.+++|+|++++++++  ++.|.+||+.+++....+..... .           
T Consensus       115 ~~i~v~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l  188 (337)
T 1pby_B          115 TRVALYDAETL---SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV  188 (337)
T ss_dssp             CEEEEEETTTT---EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred             ceEEEEECCCC---cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEE
Confidence            99999999775   44444443 4567889999999988888  68999999999887655532210 0           


Q ss_pred             -------------------------------------------------CCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 010669          355 -------------------------------------------------GRPEGYTSAAFHPDGLILGTGTSEALVKIWD  385 (504)
Q Consensus       355 -------------------------------------------------~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd  385 (504)
                                                                       .+...+.+++|+|||++++++  ++.|.+||
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d  266 (337)
T 1pby_B          189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFD  266 (337)
T ss_dssp             CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEE
T ss_pred             eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEE
Confidence                                                             001234568999999999988  79999999


Q ss_pred             cCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC
Q 010669          386 VKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS  439 (504)
Q Consensus       386 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~  439 (504)
                      +.+++.+..+..+ ..+.+++|+|+|++|++++.++ |.+||+.+++.+..+...
T Consensus       267 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          267 LEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            9999888777643 4678999999999999888777 999999999888877654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.80  E-value=4e-17  Score=159.75  Aligned_cols=238  Identities=13%  Similarity=0.169  Sum_probs=167.0

Q ss_pred             CCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe----------CCCcEEEEeCCCCCCcceeEEecc----
Q 010669          243 VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSEDGNYDCKHTLKD----  308 (504)
Q Consensus       243 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~----  308 (504)
                      .|+.|++||..+++.+..+..+..+  .++|+|+++++++++          .++.|.+||..+.   +.+..+..    
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~---~~~~~i~~~~~~  103 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL---TFEKEISLPPKR  103 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC---CEEEEEEECTTB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC---cEEEEEEcCccc
Confidence            4789999999999998888776655  899999999998886          3678999998765   44444432    


Q ss_pred             --CCcCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCeEEEE-eecCCCCCCCCCeEEEEECCCC-CEEEEEeCC----
Q 010669          309 --HTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQ-VSDAGTDGRPEGYTSAAFHPDG-LILGTGTSE----  378 (504)
Q Consensus       309 --h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~pdg-~~l~~g~~d----  378 (504)
                        +......++++|+|++++++..  ++.|.+||+.+++.+.. +...       ....+.+.|++ ..+++.+.|    
T Consensus       104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-------~~~~v~~~p~~~~~~~~~~~dg~~~  176 (361)
T 2oiz_A          104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-------GCWSVIPQPNRPRSFMTICGDGGLL  176 (361)
T ss_dssp             CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-------TEEEEEECTTSSSEEEEEETTSSEE
T ss_pred             cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-------CcceeEEcCCCCeeEEEECCCCcEE
Confidence              2245678999999999998874  58999999999988776 4321       01112233322 223333333    


Q ss_pred             --------------------------------------------CcEEEEEcCCCce--eeeeeC------C----CCCe
Q 010669          379 --------------------------------------------ALVKIWDVKSQAN--VAKFDG------H----VGAV  402 (504)
Q Consensus       379 --------------------------------------------g~I~iwd~~~~~~--~~~~~~------~----~~~i  402 (504)
                                                                  +.|.++|+.....  +..+..      +    ....
T Consensus       177 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~  256 (361)
T 2oiz_A          177 TINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGY  256 (361)
T ss_dssp             EEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCS
T ss_pred             EEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCe
Confidence                                                        4444444433221  111100      0    0111


Q ss_pred             EEEEEcCCCcEEEEEeC-----------Cc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          403 TAISFSENGYYLATAAH-----------DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       403 ~~l~~s~~g~~l~s~~~-----------d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                      ..++|+|++..++++..           .. |.+||+.+++.+..+..+   . +.+++|+|+|++|++++.+ |.+||.
T Consensus       257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~---~-p~~ia~spdg~~l~v~n~~~v~v~D~  332 (361)
T 2oiz_A          257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR---D-ALSMTIDQQRNLMLTLDGGNVNVYDI  332 (361)
T ss_dssp             SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT---T-CCEEEEETTTTEEEEECSSCEEEEEC
T ss_pred             eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC---C-eeEEEECCCCCEEEEeCCCeEEEEEC
Confidence            12789999887776643           23 999999999999988875   3 9999999999999988767 999998


Q ss_pred             eccCccc--eeEEEccCCCCCCceeEEEEeecCcc
Q 010669          470 ASVKADW--NCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       470 ~~~~~~~--~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                          .++  +.+.++..+  ......+.+.|+|.+
T Consensus       333 ----~t~~l~~~~~i~~~--G~~P~~~~~~p~G~~  361 (361)
T 2oiz_A          333 ----SQPEPKLLRTIEGA--AEASLQVQFHPVGGT  361 (361)
T ss_dssp             ----SSSSCEEEEEETTS--CSSEEEEEECCCSCC
T ss_pred             ----CCCcceeeEEeccC--CCCcEEEEecCCCCC
Confidence                678  899997665  567788999999974

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=1e-17  Score=162.55  Aligned_cols=208  Identities=10%  Similarity=0.044  Sum_probs=158.0

Q ss_pred             CeEEEEeccCCCEE-EEEeCCCcEEEEcCCCCceEEEcccC------ccceeEEEEeeCCCEEEEEeCC-----------
Q 010669          225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGH------SKKVTSVKFVTEGDLFLTGSAD-----------  286 (504)
Q Consensus       225 ~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h------~~~v~~l~~s~~~~~l~s~s~d-----------  286 (504)
                      .+..++|+|+|+++ +++..++.|.+||+.+++.+..+..+      ...+.+++|+|+|++|++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            46789999999865 45557899999999999887776532      2347899999999999988865           


Q ss_pred             -CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCC----------
Q 010669          287 -KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG----------  355 (504)
Q Consensus       287 -g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~----------  355 (504)
                       +.|.+||+.++.....+..+. +...+.+++|+|+++ +++++.  .|.+||+.+++....+.......          
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  199 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCcccee
Confidence             899999998743223333443 334688999999999 555544  49999999988776654221000          


Q ss_pred             -----------------------------------------------------CCCCeEEEEECC-CCCEEEEEeCCCcE
Q 010669          356 -----------------------------------------------------RPEGYTSAAFHP-DGLILGTGTSEALV  381 (504)
Q Consensus       356 -----------------------------------------------------~~~~v~~~~~~p-dg~~l~~g~~dg~I  381 (504)
                                                                           +...+..++|+| +|++++++  ++.|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v  277 (349)
T 1jmx_B          200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRL  277 (349)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEE
T ss_pred             eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeE
Confidence                                                                 011345778889 99999988  8899


Q ss_pred             EEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC
Q 010669          382 KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS  439 (504)
Q Consensus       382 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~  439 (504)
                      .+||+.+++.+..+.. ...+.+++|+|+|.+|++++.++ |.+||+.+++.+..+...
T Consensus       278 ~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          278 AKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            9999999988777763 34578999999999888887777 999999999888877664

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.78  E-value=1.2e-17  Score=174.61  Aligned_cols=225  Identities=12%  Similarity=0.123  Sum_probs=164.0

Q ss_pred             CCCCeEEEEeccCCCEEEEEeC---CCcEEEEcCCC---CceEEEcccCccceeEEEEeeCCCE-EEEEeCCCcEEEEeC
Q 010669          222 SKPGIVSLDIHYSKDVIATGGV---DTNAVLFDRPS---GQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQG  294 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~~l~sg~~---dg~i~vwd~~~---~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~s~dg~i~iwd~  294 (504)
                      +...+.+++|+|| +++++++.   +....+|.+..   +... .+..+. .+...+|+|+++. +++.+.++.+.+||+
T Consensus        63 ~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~  139 (582)
T 3o4h_A           63 PINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYAL  139 (582)
T ss_dssp             CCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEE
T ss_pred             cccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEc
Confidence            3467999999999 77777765   45455654322   3333 343222 3446788988863 344444455669999


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC----CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~  370 (504)
                      .++   .... +..+..  .+++|+|||++|++++.+    +.|++||+.+++.. .+.     .+...+..++|+|||+
T Consensus       140 ~~g---~~~~-l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~-----~~~~~~~~~~~SpDG~  207 (582)
T 3o4h_A          140 DGG---GLRE-LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD-----SGEGSFSSASISPGMK  207 (582)
T ss_dssp             ETT---EEEE-EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC-----CSSCEEEEEEECTTSC
T ss_pred             cCC---cEEE-eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee-----cCCCccccceECCCCC
Confidence            874   3332 223333  789999999999988877    78999999988765 332     4556789999999999


Q ss_pred             EEEEEeCCC--cEEEEEcCCCceeeeeeCCCCCeEEEE--------EcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC
Q 010669          371 ILGTGTSEA--LVKIWDVKSQANVAKFDGHVGAVTAIS--------FSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS  439 (504)
Q Consensus       371 ~l~~g~~dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~--------~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~  439 (504)
                      .|+++..+|  .|++||+.+++.. .+.+|...+..+.        |+|||.++++++.++ +++|++  ++...   ..
T Consensus       208 ~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~  281 (582)
T 3o4h_A          208 VTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP  281 (582)
T ss_dssp             EEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC
T ss_pred             EEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC
Confidence            999888888  8999999988877 7777777777777        999998889998888 999999  55443   11


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCc---EEEEEee
Q 010669          440 DSETPTNSVDFDHSGSYLAVASAD---IRVYQVA  470 (504)
Q Consensus       440 ~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~  470 (504)
                        ...+.+++|+ +|+++++++.+   ..+|.++
T Consensus       282 --~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          282 --QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             --SSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             --CCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence              3568899999 99998887766   5566553

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.76  E-value=3.2e-16  Score=153.66  Aligned_cols=255  Identities=11%  Similarity=0.053  Sum_probs=165.3

Q ss_pred             EEEEEeCC--CcEEEEcC--CCCceEE--Ecc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC-CCCCcceeEEe--
Q 010669          237 VIATGGVD--TNAVLFDR--PSGQIVT--TLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS-EDGNYDCKHTL--  306 (504)
Q Consensus       237 ~l~sg~~d--g~i~vwd~--~~~~~~~--~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~--  306 (504)
                      ++++|+..  +.|.+|++  .+++...  ... .....+..++|+|++++|++++.+ .|.+|++. ++   ......  
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g---~~~~~~~~   79 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT---EIVHEASH   79 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT---EEEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCC---CEEEeeEe
Confidence            34555543  46777664  4554422  221 233468899999999999998888 99999986 43   222221  


Q ss_pred             ccCCcCeEEEEEccCCCE--EEEEe-------------CCCeEEEEECC-CCeEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669          307 KDHTAEVQAVTVHATNKY--FVTAS-------------LDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       307 ~~h~~~v~~l~~~p~~~~--l~s~s-------------~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~  370 (504)
                      ..+ +.+..++|+|+|++  +++++             .+|.+.+|++. .++....+..... .+...+.+++|+|||+
T Consensus        80 ~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~spdG~  157 (365)
T 1jof_A           80 PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY-QENTGIHGMVFDPTET  157 (365)
T ss_dssp             ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC-CTTCCEEEEEECTTSS
T ss_pred             ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe-CCCCcceEEEECCCCC
Confidence            111 23556899999994  44553             68999999997 4554433321000 1235689999999999


Q ss_pred             EEEEEeC-CCcEEEEEcC-CCcee--eeee--CCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcC--CCcce---eeee
Q 010669          371 ILGTGTS-EALVKIWDVK-SQANV--AKFD--GHVGAVTAISFSENGYYLATAAHD-G-VKLWDLR--KLKNF---RSFE  437 (504)
Q Consensus       371 ~l~~g~~-dg~I~iwd~~-~~~~~--~~~~--~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~--~~~~~---~~~~  437 (504)
                      ++++++. ++.|++||+. +++..  ..+.  .|...+..++|+|+|++|++++.. + |.+|++.  +++..   ..+.
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~  237 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence            8887654 6899999998 66543  3333  235679999999999999888764 5 9999775  45432   1222


Q ss_pred             cCCC-----CC------CeeEEE-ECCCCCEEEEEe---C-----cEEEEEeeccCccceeEE---EccCCCCCCceeEE
Q 010669          438 SSDS-----ET------PTNSVD-FDHSGSYLAVAS---A-----DIRVYQVASVKADWNCIK---TFPDLSGTGAASFL  494 (504)
Q Consensus       438 ~~~~-----~~------~v~~i~-~~~~g~~l~~~~---~-----di~vw~~~~~~~~~~~i~---~~~~h~~~~~v~~l  494 (504)
                      ....     ..      .+..++ |+|||++|++++   .     .|.+|+++.   +++...   .+..+  ...+..+
T Consensus       238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~---~g~~~~~~~~~~~~--~~~~~~~  312 (365)
T 1jof_A          238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD---CGSIEKQLFLSPTP--TSGGHSN  312 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT---TSCEEEEEEEEECS--SCCTTCC
T ss_pred             cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC---CCCEEEeeeeeecC--CCCcccc
Confidence            2110     11      478999 999999988764   2     389999842   233222   23333  3456778


Q ss_pred             EEee---cCcc
Q 010669          495 FLFV---LGQT  502 (504)
Q Consensus       495 ~~~~---~g~~  502 (504)
                      +|+|   +|+.
T Consensus       313 a~sp~~~dg~~  323 (365)
T 1jof_A          313 AVSPCPWSDEW  323 (365)
T ss_dssp             CEEECTTCTTE
T ss_pred             eecCCCcCCCE
Confidence            8888   6753

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.75  E-value=8.5e-16  Score=145.93  Aligned_cols=230  Identities=11%  Similarity=0.090  Sum_probs=169.0

Q ss_pred             CCCCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669          222 SKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY  300 (504)
Q Consensus       222 ~~~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  300 (504)
                      +.....+++|+|+|+ +++++..++.|..|+..++  ...+..+...+.+++++++|+++++...++.|.+||..++.  
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~--  101 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE--  101 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC--
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc--
Confidence            344578999999998 7888888999999999876  56666677889999999999988777777899999986642  


Q ss_pred             ceeEEecc----CCcCeEEEEEccCCCEEEEE----e-------------CCCeEEEEECCCCeEEEEeecCCCCCCCCC
Q 010669          301 DCKHTLKD----HTAEVQAVTVHATNKYFVTA----S-------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEG  359 (504)
Q Consensus       301 ~~~~~~~~----h~~~v~~l~~~p~~~~l~s~----s-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  359 (504)
                       .......    ....+.+++++|+|+++++.    +             ..+.|..+|.. +... .+.     .+...
T Consensus       102 -~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~-----~~~~~  173 (296)
T 3e5z_A          102 -WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-API-----RDRVK  173 (296)
T ss_dssp             -EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEE-----CCCSS
T ss_pred             -EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eee-----cCCCC
Confidence             2211111    12346789999999988873    2             13466666665 4433 222     22345


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEcC-CCce---eeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceee
Q 010669          360 YTSAAFHPDGLILGTGTSEALVKIWDVK-SQAN---VAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRS  435 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~~dg~I~iwd~~-~~~~---~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~  435 (504)
                      ...++|+|+|+++++.+.++.|.+||+. .++.   ...+..+.+.+.+++++++|.++++. .++|.+||.. ++.+..
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~  251 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGR  251 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEE
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEE
Confidence            7899999999988777788999999997 4443   23333345667889999999877766 4459999986 777777


Q ss_pred             eecCCCCCCeeEEEE-CCCCCEEEEEeCcEEEEEe
Q 010669          436 FESSDSETPTNSVDF-DHSGSYLAVASADIRVYQV  469 (504)
Q Consensus       436 ~~~~~~~~~v~~i~~-~~~g~~l~~~~~di~vw~~  469 (504)
                      +..+  .. +.+++| .|+++.|++++.+ .+|.+
T Consensus       252 ~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~  282 (296)
T 3e5z_A          252 VLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSI  282 (296)
T ss_dssp             EECS--SC-CCEEEEESTTSCEEEEEETT-EEEEE
T ss_pred             EECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEE
Confidence            7665  34 889999 6899999998887 45554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.75  E-value=2e-15  Score=141.76  Aligned_cols=252  Identities=12%  Similarity=0.090  Sum_probs=197.0

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEcccCc-cceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccC-Cc
Q 010669          234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHS-KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH-TA  311 (504)
Q Consensus       234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h-~~  311 (504)
                      .+++|++++.++.|++||..+|+.+.++..+. ..+.++.++|+|++++  +.++.|..||. ++   +.+..+..+ ..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G---~~~W~~~~~~~~   77 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG---RELWNIAAPAGC   77 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS---CEEEEEECCTTC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC---CEEEEEcCCCCc
Confidence            46889999999999999999999999998765 4789999999999888  45778999998 44   455556544 34


Q ss_pred             CeEEEEEccCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCC-CCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 010669          312 EVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGT-DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ  389 (504)
Q Consensus       312 ~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~  389 (504)
                      .+.++.+.++|+++++.+. ++.+..+|. +++.+..+..... ..+......+++.++|+++++...++.|..||.. +
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence            6889999999999999887 888888886 6766666542211 1222345567889999999999999999999987 9


Q ss_pred             ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC----CCCCeeEEEECCCCCEEEEEe---
Q 010669          390 ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD----SETPTNSVDFDHSGSYLAVAS---  461 (504)
Q Consensus       390 ~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~----~~~~v~~i~~~~~g~~l~~~~---  461 (504)
                      +.+.++... ..+.++.+.++|.++++++.++ |..||..+++.+..+....    ....+..+...++|.++++..   
T Consensus       156 ~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~  234 (276)
T 3no2_A          156 QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGH  234 (276)
T ss_dssp             CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTT
T ss_pred             CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCc
Confidence            998888754 4566788899999999888887 9999999999988886432    123478889999999998874   


Q ss_pred             -------CcEEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669          462 -------ADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       462 -------~di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~  497 (504)
                             .+.+++++   ..+++.+-+|..+..-+.+.+++..
T Consensus       235 ~~~~~~~~~~~~~~~---~~~g~~~W~~~~~~~~~~~~~~~~~  274 (276)
T 3no2_A          235 DREAGKGKHPQLVEI---DSEGKVVWQLNDKVKFGMISTICPI  274 (276)
T ss_dssp             CTTGGGSCCCSEEEE---CTTSBEEEEECCTTTSCCCCEEEEE
T ss_pred             cccccccCCceEEEE---CCCCCEEEEecCcccccceeeeeec
Confidence                   23678988   3567888888887666777776543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=1.2e-17  Score=165.31  Aligned_cols=222  Identities=10%  Similarity=-0.018  Sum_probs=151.1

Q ss_pred             eEEEEeccCCCEEEEEeCC---CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669          226 IVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      +.+++|+|||++|+.....   ..|.+||+.+++......++......+.|+|+|++|+.++.++.|.+||+.++   ..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~---~~  114 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL---EE  114 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC---CE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCC---Cc
Confidence            5678899999988776543   46888999887765444433333344889999999999999999999999875   22


Q ss_pred             eEEeccCCcCeEE-------------------EEEccCCCEEEEE-----eCCCeEEEEECCCCeEEEEeecCCCCCCCC
Q 010669          303 KHTLKDHTAEVQA-------------------VTVHATNKYFVTA-----SLDNTWCFYDLSSGICLTQVSDAGTDGRPE  358 (504)
Q Consensus       303 ~~~~~~h~~~v~~-------------------l~~~p~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  358 (504)
                      ......+......                   +.|+|+++.++.+     ..+..|.+||+.+++......      +..
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~------~~~  188 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ------DTA  188 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE------ESS
T ss_pred             EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc------CCc
Confidence            2333323332222                   3457777766554     356689999999887655442      234


Q ss_pred             CeEEEEECC-CCCEEEEEeCC------CcEEEEEcCCCceeeeeeCC-CCCeEEEEEcCCCcEEEEEeCC-----c-EEE
Q 010669          359 GYTSAAFHP-DGLILGTGTSE------ALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHD-----G-VKL  424 (504)
Q Consensus       359 ~v~~~~~~p-dg~~l~~g~~d------g~I~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~s~~~d-----~-v~v  424 (504)
                      .+..+.|+| ++..|+..+.+      ..|.+||+..++........ ...+..+.|+|+|.+|+.++.+     + |++
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (396)
T 3c5m_A          189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK  268 (396)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred             ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEE
Confidence            688999999 88877665543      36888998765433322211 2358889999999987766443     3 999


Q ss_pred             EEcCCCcceeeeecCCCCCCeeEEEECC-CCCEEEEEe
Q 010669          425 WDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVAS  461 (504)
Q Consensus       425 wd~~~~~~~~~~~~~~~~~~v~~i~~~~-~g~~l~~~~  461 (504)
                      ||+.+++........    ... +.|+| +|+++++++
T Consensus       269 ~d~~~g~~~~l~~~~----~~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          269 ANPETLENEEVMVMP----PCS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             ECTTTCCEEEEEECC----SEE-EEEECSSSSEEEEEE
T ss_pred             EECCCCCeEEeeeCC----CCC-CCccCCCCceEEEec
Confidence            999887654333222    233 89999 999888754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.74  E-value=4.2e-16  Score=165.30  Aligned_cols=262  Identities=9%  Similarity=-0.032  Sum_probs=180.7

Q ss_pred             cCCCCCeEEEEeccCCCEEEEE--eCCCcEEEEcCCCCceEEEcccCcccee---------EEEEe--eCCCE-EEEEeC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATG--GVDTNAVLFDRPSGQIVTTLSGHSKKVT---------SVKFV--TEGDL-FLTGSA  285 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~h~~~v~---------~l~~s--~~~~~-l~s~s~  285 (504)
                      .+|...+..++|++++-+++..  +.++...||....+.....+..|...+.         ...|+  |||+. |+.++.
T Consensus        20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~   99 (662)
T 3azo_A           20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF   99 (662)
T ss_dssp             HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred             hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence            3466789999999876666666  5588899998655555677777776666         66676  89998 666554


Q ss_pred             -CCcEEEEeCC--CCCCcceeEEecc-----CCcCeEEEEEccCCCEEEEEeCC----------CeEEEEECCC------
Q 010669          286 -DKTVRVWQGS--EDGNYDCKHTLKD-----HTAEVQAVTVHATNKYFVTASLD----------NTWCFYDLSS------  341 (504)
Q Consensus       286 -dg~i~iwd~~--~~~~~~~~~~~~~-----h~~~v~~l~~~p~~~~l~s~s~d----------g~i~iwd~~~------  341 (504)
                       +..|.+|++.  ..+  . ...+..     |...+.+++|+|||+.|++++.+          ..|++||+.+      
T Consensus       100 ~~~~l~~~~~~~~g~~--~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A          100 GDQRLYAFEPDAPGGA--V-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             TTCCEEEECTTSTTCC--C-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             CCCeEEEEcCCCCCCC--C-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence             5567677665  202  1 233344     66788999999999999998877          5899999988      


Q ss_pred             CeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC--------CcEEEEEcC-CC---ceeeeeeCCCCCeEEEEEcC
Q 010669          342 GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--------ALVKIWDVK-SQ---ANVAKFDGHVGAVTAISFSE  409 (504)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d--------g~I~iwd~~-~~---~~~~~~~~~~~~i~~l~~s~  409 (504)
                      +... .+..    .+...+..++|+|||+.|+.++.+        ..|++||+. ++   +......+|...+..+.|+|
T Consensus       177 ~~~~-~l~~----~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp  251 (662)
T 3azo_A          177 SAVR-ELSD----DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP  251 (662)
T ss_dssp             GGSE-ESSC----SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred             Ccee-EEEe----cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence            5433 2220    123467789999999999887754        379999998 56   44444444577899999999


Q ss_pred             CCcEEEEEeCCc---EEEEEcCCCcceeeeecCCCC------CCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeE
Q 010669          410 NGYYLATAAHDG---VKLWDLRKLKNFRSFESSDSE------TPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCI  479 (504)
Q Consensus       410 ~g~~l~s~~~d~---v~vwd~~~~~~~~~~~~~~~~------~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i  479 (504)
                      ||+++++++.++   |.+||+.+++.......+...      ..+..++|+|++.++++++.. ++||.++..   ...+
T Consensus       252 dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~---~~~~  328 (662)
T 3azo_A          252 DGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPE---SGEL  328 (662)
T ss_dssp             TSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETT---TTEE
T ss_pred             CCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECC---CCcE
Confidence            999777777665   667776566543322221100      015678999999998887655 888876432   2236


Q ss_pred             EEccCCCCCCceeEE
Q 010669          480 KTFPDLSGTGAASFL  494 (504)
Q Consensus       480 ~~~~~h~~~~~v~~l  494 (504)
                      ..+..|  .+.+..+
T Consensus       329 ~~l~~~--~~~~~~~  341 (662)
T 3azo_A          329 VDAAGP--WTEWAAT  341 (662)
T ss_dssp             EECCSS--CCEEEEE
T ss_pred             EEecCC--CCeEEEE
Confidence            677766  5566655

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=1.1e-16  Score=158.15  Aligned_cols=245  Identities=8%  Similarity=0.010  Sum_probs=164.3

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEE--eeCCCEEEEE------------
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKF--VTEGDLFLTG------------  283 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~--s~~~~~l~s~------------  283 (504)
                      +...+...+..+.|+|||+.|+.++.++.|++||+.+++....+..+...+....|  ++++.+++..            
T Consensus        75 lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~  154 (388)
T 3pe7_A           75 LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD  154 (388)
T ss_dssp             CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred             eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccc
Confidence            33444445556789999999999999999999999999877666666665554444  7888887642            


Q ss_pred             ----------eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCC------CeEEEEECCCCeEEE
Q 010669          284 ----------SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLD------NTWCFYDLSSGICLT  346 (504)
Q Consensus       284 ----------s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~d------g~i~iwd~~~~~~~~  346 (504)
                                +.++.|.+||+.++   . ...+..+...+..+.|+| +|+.|+.++.+      ..|.++|+..+... 
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g---~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-  229 (388)
T 3pe7_A          155 WKKFHEFYFTKPCCRLMRVDLKTG---E-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-  229 (388)
T ss_dssp             HHHHHHHGGGCCCEEEEEEETTTC---C-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-
T ss_pred             cchhhhhhccCCcceEEEEECCCC---c-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-
Confidence                      24578999999875   2 334445667789999999 99988887763      37888888766433 


Q ss_pred             EeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CC----cEEEEEcCCCce--eeeeeCCCC---CeEEEEEcCCCcEEEE
Q 010669          347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA----LVKIWDVKSQAN--VAKFDGHVG---AVTAISFSENGYYLAT  416 (504)
Q Consensus       347 ~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg----~I~iwd~~~~~~--~~~~~~~~~---~i~~l~~s~~g~~l~s  416 (504)
                      .+...   .....+....|+|||+.|+..+. ++    .|++||+.+++.  +..+.++..   ....+.|+|||..|+.
T Consensus       230 ~l~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~  306 (388)
T 3pe7_A          230 KVKTH---AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPV  306 (388)
T ss_dssp             ESCCC---CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--
T ss_pred             EeeeC---CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCccee
Confidence            23210   11135778899999997755432 22    399999998864  333333110   0122379999988875


Q ss_pred             E---------eCCc-EEEEEcCCCcceeeeecCCC---------CCCeeEEEECCCCCEEEEEeCc---EEEEEeec
Q 010669          417 A---------AHDG-VKLWDLRKLKNFRSFESSDS---------ETPTNSVDFDHSGSYLAVASAD---IRVYQVAS  471 (504)
Q Consensus       417 ~---------~~d~-v~vwd~~~~~~~~~~~~~~~---------~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~  471 (504)
                      .         ..+. |++||+.+++.. .+..+..         ...+..++|+|||+.|+..+..   ..||.++.
T Consensus       307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          307 DVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             ----------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             EeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence            4         2334 999999887653 3333311         0046788999999999887754   77777644

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.73  E-value=9e-16  Score=148.25  Aligned_cols=263  Identities=11%  Similarity=0.045  Sum_probs=183.6

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  303 (504)
                      ..|.++.|++++..++..+.++.+..|   .++....+..+...+.+++|++++++++++..++.|.+||..++   ...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~---~~~   79 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK---EIK   79 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC---cEE
Confidence            346788899988877777788889999   35666677777778899999999998888888999999998764   233


Q ss_pred             EEeccCCcCeEEEEEccCCCEEEEEeCC----CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC--
Q 010669          304 HTLKDHTAEVQAVTVHATNKYFVTASLD----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS--  377 (504)
Q Consensus       304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~--  377 (504)
                      .....+...+.+++++|+++++++...+    +.|.+||..++.....+...   .....+..++++|+|+++++...  
T Consensus        80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~i~~d~~g~l~v~~~~~~  156 (333)
T 2dg1_A           80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL---STAYCIDDMVFDSKGGFYFTDFRGY  156 (333)
T ss_dssp             EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS---SSCCCEEEEEECTTSCEEEEECCCB
T ss_pred             EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC---ccCCcccceEECCCCCEEEEecccc
Confidence            2222456789999999999988877766    68999999887654333211   22356899999999998877653  


Q ss_pred             ----CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEe-CCc-EEEEEcCC-Ccceeee-----ecCCCCCCe
Q 010669          378 ----EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA-HDG-VKLWDLRK-LKNFRSF-----ESSDSETPT  445 (504)
Q Consensus       378 ----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~-~d~-v~vwd~~~-~~~~~~~-----~~~~~~~~v  445 (504)
                          .+.|..||...++... +..+...+..++|+|+|.+|+.+. .++ |.+||+.+ +..+..+     ........+
T Consensus       157 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~  235 (333)
T 2dg1_A          157 STNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP  235 (333)
T ss_dssp             TTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE
T ss_pred             ccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCC
Confidence                3567777765544332 322334688999999998665554 344 99999964 3332211     111111367


Q ss_pred             eEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCC----CCceeEEEEeecCc
Q 010669          446 NSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG----TGAASFLFLFVLGQ  501 (504)
Q Consensus       446 ~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~----~~~v~~l~~~~~g~  501 (504)
                      ..++++++|+++++...+  |.+|+.     .++.+..+..+..    ...+.+++|.++|.
T Consensus       236 ~~i~~d~~G~l~v~~~~~~~v~~~d~-----~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~  292 (333)
T 2dg1_A          236 DSCCIDSDDNLYVAMYGQGRVLVFNK-----RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN  292 (333)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECT-----TSCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred             CceEECCCCCEEEEEcCCCEEEEECC-----CCCEEEEEEcCCCccccccCcceEEECCCCC
Confidence            889999999987777554  888874     3455555544310    12688999988874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.73  E-value=1.1e-14  Score=140.66  Aligned_cols=240  Identities=11%  Similarity=0.139  Sum_probs=170.5

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC----CcEEEEeCCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD----KTVRVWQGSE  296 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d----g~i~iwd~~~  296 (504)
                      .+...+.+++|+++|++++++..++.|.+||..+++.......+...+.+++|++++++++++..+    +.|.+||..+
T Consensus        42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~  121 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  121 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC
Confidence            344567899999999988888889999999998887665444566789999999999887777666    6899999876


Q ss_pred             CCCcceeEEec--cCCcCeEEEEEccCCCEEEEEeC------CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669          297 DGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       297 ~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd  368 (504)
                      ..   ....+.  .+...+.++.++|+|+++++...      .+.|..||..+++.......      ...+..++|+|+
T Consensus       122 ~~---~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~i~~~~d  192 (333)
T 2dg1_A          122 DN---LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN------ISVANGIALSTD  192 (333)
T ss_dssp             CS---CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE------ESSEEEEEECTT
T ss_pred             CE---EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC------CCcccceEECCC
Confidence            42   221221  24457899999999988777654      35677777665544332211      134788999999


Q ss_pred             CCEEE-EEeCCCcEEEEEcCC-Cceeee--------eeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669          369 GLILG-TGTSEALVKIWDVKS-QANVAK--------FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       369 g~~l~-~g~~dg~I~iwd~~~-~~~~~~--------~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~  437 (504)
                      |+.++ +.+.++.|.+||+.. +..+..        +.++ ..+..++++++|.++++...++ |.+||. +++.+..+.
T Consensus       193 g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~  270 (333)
T 2dg1_A          193 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  270 (333)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE
Confidence            98554 445678999999964 332221        1222 4678899999999888776666 999998 466666665


Q ss_pred             cCCC----CCCeeEEEECCCCCEEEEEeCc------EEEEEeec
Q 010669          438 SSDS----ETPTNSVDFDHSGSYLAVASAD------IRVYQVAS  471 (504)
Q Consensus       438 ~~~~----~~~v~~i~~~~~g~~l~~~~~d------i~vw~~~~  471 (504)
                      ....    ...+.+++|+|++..|++++.+      ..||.+..
T Consensus       271 ~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          271 IPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             CTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             cCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence            4321    1158899999998777655443      57887744

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=1.7e-15  Score=162.00  Aligned_cols=240  Identities=10%  Similarity=0.083  Sum_probs=169.6

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCC-----cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCc-------
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDT-----NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT-------  288 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~-------  288 (504)
                      +|...+..++|||||++|+.+..++     .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3444688999999999998776543     8999999999876543322 23678999999999998888766       


Q ss_pred             ---------EEEEeCCCCCCc-ceeEEeccCCcCeEEEEEccCCCEEEEEeC-----CCeEEEEECCC------Ce-EEE
Q 010669          289 ---------VRVWQGSEDGNY-DCKHTLKDHTAEVQAVTVHATNKYFVTASL-----DNTWCFYDLSS------GI-CLT  346 (504)
Q Consensus       289 ---------i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-----dg~i~iwd~~~------~~-~~~  346 (504)
                               |++|++.++... ..+.....|...+..+.|+|+|++|+.++.     +..|.+||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     999999775311 122222335566889999999999888765     56899999986      42 233


Q ss_pred             EeecCCCCCCCCCeEEEEECCCCCEEEEEeCC----CcEEEEEcCCCc--eeeeeeCCCC--CeEEEEEcCCCcEEEEEe
Q 010669          347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE----ALVKIWDVKSQA--NVAKFDGHVG--AVTAISFSENGYYLATAA  418 (504)
Q Consensus       347 ~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d----g~I~iwd~~~~~--~~~~~~~~~~--~i~~l~~s~~g~~l~s~~  418 (504)
                      .+..     +...+.. .|+|+|..|+..+..    +.|.+||+.++.  ....+..|..  .+..+.|++++.++++..
T Consensus       281 ~l~~-----~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~  354 (710)
T 2xdw_A          281 KLID-----NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL  354 (710)
T ss_dssp             EEEC-----SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             EeeC-----CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence            3431     2223333 588888877766553    369999998764  2344544543  688899998888888888


Q ss_pred             CCc---EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEE-eC-c----EEEEEe
Q 010669          419 HDG---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA-SA-D----IRVYQV  469 (504)
Q Consensus       419 ~d~---v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~-~~-d----i~vw~~  469 (504)
                      .++   |.+||+.+++.+..+..+  ...+..+.++|++..++.. +. .    +.+||+
T Consensus       355 ~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          355 HDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             ECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            775   778888777766666654  5678889999999766644 22 2    566665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.72  E-value=3.1e-16  Score=168.49  Aligned_cols=265  Identities=9%  Similarity=0.069  Sum_probs=172.2

Q ss_pred             EEEEeccCCCEEEEEeCC---------CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          227 VSLDIHYSKDVIATGGVD---------TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       227 ~~~~~s~~~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ..+.|||||++|+.++.+         +.+.+||+.+++.. .+..|.+.+...+|||||+.|+.+. |+.|.+|+..++
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~  142 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL  142 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence            458899999999998875         56779999988754 4667788899999999999998874 689999998775


Q ss_pred             CCcceeEEeccCCcCe-----------------EEEEEccCCCEEEEEeCCC----------------------------
Q 010669          298 GNYDCKHTLKDHTAEV-----------------QAVTVHATNKYFVTASLDN----------------------------  332 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v-----------------~~l~~~p~~~~l~s~s~dg----------------------------  332 (504)
                      ..  ...+..++...+                 ..+.|+|||++|+.++.|.                            
T Consensus       143 ~~--~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~  220 (740)
T 4a5s_A          143 PS--YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK  220 (740)
T ss_dssp             CC--EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred             ce--EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence            31  111122332222                 3589999999999875332                            


Q ss_pred             --------eEEEEECCC---Ce--EEEEeecC-CCCCCCCCeEEEEECCCCCEEEEEeC----CCcEEEEEcCCCc----
Q 010669          333 --------TWCFYDLSS---GI--CLTQVSDA-GTDGRPEGYTSAAFHPDGLILGTGTS----EALVKIWDVKSQA----  390 (504)
Q Consensus       333 --------~i~iwd~~~---~~--~~~~~~~~-~~~~~~~~v~~~~~~pdg~~l~~g~~----dg~I~iwd~~~~~----  390 (504)
                              .|++||+.+   +.  ....+... ...++...+..++|+|||++++....    +..|++||+.+++    
T Consensus       221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~  300 (740)
T 4a5s_A          221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN  300 (740)
T ss_dssp             TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred             CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc
Confidence                    478889888   63  12222210 00025567899999999997665533    3479999998887    


Q ss_pred             ee--eee--eCCCCCeE-----EEEEcCCCcEEE-EEeCC-c---EEEEEcCCCcceeeeecCCCCCCeeEEE-ECCCCC
Q 010669          391 NV--AKF--DGHVGAVT-----AISFSENGYYLA-TAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVD-FDHSGS  455 (504)
Q Consensus       391 ~~--~~~--~~~~~~i~-----~l~~s~~g~~l~-s~~~d-~---v~vwd~~~~~~~~~~~~~~~~~~v~~i~-~~~~g~  455 (504)
                      +.  ..+  .+|...|.     .+.|+|||+.|+ ..+.+ |   |++||+..+.... +...  ...+..+. |+  ++
T Consensus       301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g--~~~v~~~~~~d--~~  375 (740)
T 4a5s_A          301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKG--TWEVIGIEALT--SD  375 (740)
T ss_dssp             ECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCS--SSCEEEEEEEC--SS
T ss_pred             eeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccC--CEEEEEEEEEe--CC
Confidence            22  222  44555544     789999999877 66543 3   9999998765443 3222  34455544 44  55


Q ss_pred             EEE-EEeC--c----EEEEEeeccCccceeEEEccCC--CCCCceeEEEEeecCcc
Q 010669          456 YLA-VASA--D----IRVYQVASVKADWNCIKTFPDL--SGTGAASFLFLFVLGQT  502 (504)
Q Consensus       456 ~l~-~~~~--d----i~vw~~~~~~~~~~~i~~~~~h--~~~~~v~~l~~~~~g~~  502 (504)
                      .|+ +++.  +    ..||.++...  ......+...  .....+....|+++|+.
T Consensus       376 ~i~f~~~~~~~~~~~~~ly~v~~~g--~~~~~~lt~~~~~~~~~~~~~~~S~dg~~  429 (740)
T 4a5s_A          376 YLYYISNEYKGMPGGRNLYKIQLID--YTKVTCLSCELNPERCQYYSVSFSKEAKY  429 (740)
T ss_dssp             EEEEEESCGGGCTTCBEEEEEETTE--EEEEEESSTTTSTTTBCBEEEEECTTSSE
T ss_pred             EEEEEEecCCCCCceeEEEEEECCC--CCcceeeccccCCCCCceEEEEECCCCCE
Confidence            544 4444  2    7888774422  2222123211  01356788889988864

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=1.2e-15  Score=161.78  Aligned_cols=234  Identities=12%  Similarity=0.043  Sum_probs=159.2

Q ss_pred             EEEec--cCCCE-EEEEeC-CCcEEEEcCC--C-CceEEEccc-----CccceeEEEEeeCCCEEEEEeCC---------
Q 010669          228 SLDIH--YSKDV-IATGGV-DTNAVLFDRP--S-GQIVTTLSG-----HSKKVTSVKFVTEGDLFLTGSAD---------  286 (504)
Q Consensus       228 ~~~~s--~~~~~-l~sg~~-dg~i~vwd~~--~-~~~~~~~~~-----h~~~v~~l~~s~~~~~l~s~s~d---------  286 (504)
                      ...|+  |||+. |+.++. +..|++|++.  . ++ ...+..     |...+.+++|+|||+.|++++.+         
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence            34454  99998 766553 5678888876  3 43 445555     67788999999999999988876         


Q ss_pred             -CcEEEEeCCCCC--C-cceeEEec-cCCcCeEEEEEccCCCEEEEEeCC--------CeEEEEECC-CCe--EEEEeec
Q 010669          287 -KTVRVWQGSEDG--N-YDCKHTLK-DHTAEVQAVTVHATNKYFVTASLD--------NTWCFYDLS-SGI--CLTQVSD  350 (504)
Q Consensus       287 -g~i~iwd~~~~~--~-~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~d--------g~i~iwd~~-~~~--~~~~~~~  350 (504)
                       ..|.+||+.+..  . ... ..+. .+...+..+.|+|||++|+.++.+        ..|.+||+. ++.  ....+..
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~  238 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG  238 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred             eeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence             589999987620  0 022 3444 555678889999999999988755        379999999 561  2233321


Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEeCCC--cEEEEEcCCCceeeeeeCCCCC--------eEEEEEcCCCcEEEEEeCC
Q 010669          351 AGTDGRPEGYTSAAFHPDGLILGTGTSEA--LVKIWDVKSQANVAKFDGHVGA--------VTAISFSENGYYLATAAHD  420 (504)
Q Consensus       351 ~~~~~~~~~v~~~~~~pdg~~l~~g~~dg--~I~iwd~~~~~~~~~~~~~~~~--------i~~l~~s~~g~~l~s~~~d  420 (504)
                          .+...+..+.|+|||++++++..+|  .|.+||+.+++.......+...        +..++|++++.++++++. 
T Consensus       239 ----~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-  313 (662)
T 3azo_A          239 ----GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-  313 (662)
T ss_dssp             ----ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-
T ss_pred             ----CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-
Confidence                2346789999999999888888888  6667776666654433333222        567899999999999988 


Q ss_pred             c-EEEE--EcCCCcceeeeecCCCCCCeeEE-EECCCCCEEEEEeCc--EEEEEeec
Q 010669          421 G-VKLW--DLRKLKNFRSFESSDSETPTNSV-DFDHSGSYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       421 ~-v~vw--d~~~~~~~~~~~~~~~~~~v~~i-~~~~~g~~l~~~~~d--i~vw~~~~  471 (504)
                      + ++||  |+.+++ +..+..+  ...+..+ +++.+.-++++++.+  ..||.++.
T Consensus       314 ~~~~l~~~d~~~~~-~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~  367 (662)
T 3azo_A          314 GAAVLGILDPESGE-LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDT  367 (662)
T ss_dssp             SSCEEEEEETTTTE-EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred             CccEEEEEECCCCc-EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence            7 7777  655554 4555443  4456666 554443344445555  67776643

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.71  E-value=5.8e-15  Score=137.88  Aligned_cols=234  Identities=12%  Similarity=0.044  Sum_probs=164.3

Q ss_pred             CeEEEEeccCCCEEE-EEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669          225 GIVSLDIHYSKDVIA-TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  303 (504)
                      ...+++++++|++++ +.+.++.|.+|+..++........+...+.+++++++++++++.. ++.|.+||....    ..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~----~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN----NQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS----CC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc----eE
Confidence            578999999999777 547788999999765543322233445688999999998666655 889999998653    22


Q ss_pred             EEec-cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 010669          304 HTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK  382 (504)
Q Consensus       304 ~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~  382 (504)
                      ..+. .....+.+++++++|+.+++...++.|.+||..+........     .....+.+++++++|+++++...++.|.
T Consensus       100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~p~~i~~~~~g~l~v~~~~~~~i~  174 (270)
T 1rwi_B          100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-----TGLNDPDGVAVDNSGNVYVTDTDNNRVV  174 (270)
T ss_dssp             EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-----CSCCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred             eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-----ccCCCceeEEEeCCCCEEEEECCCCEEE
Confidence            2222 233568999999999988877778999999866554332211     2223578899999999888877788999


Q ss_pred             EEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEe
Q 010669          383 IWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS  461 (504)
Q Consensus       383 iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~  461 (504)
                      +||............+...+.+++++++|.++++...++ |.+||........ ... .....+.+++++++|+++++..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v~~~  252 (270)
T 1rwi_B          175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYVADR  252 (270)
T ss_dssp             EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEEEEG
T ss_pred             EEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEEEEC
Confidence            999877655443333446789999999997777766665 9999987544322 221 1135689999999998777766


Q ss_pred             Cc--EEEEEee
Q 010669          462 AD--IRVYQVA  470 (504)
Q Consensus       462 ~d--i~vw~~~  470 (504)
                      .+  |++|++.
T Consensus       253 ~~~~v~~~~~~  263 (270)
T 1rwi_B          253 GNDRVVKLTSL  263 (270)
T ss_dssp             GGTEEEEECCC
T ss_pred             CCCEEEEEcCC
Confidence            55  8888873

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=2.3e-13  Score=128.74  Aligned_cols=259  Identities=9%  Similarity=-0.000  Sum_probs=183.4

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEE-cccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT-LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ...+.+++++++|++.++...++.|.+||.. ++.... +..+...+.++++.+++.++++...++.|..||...  . .
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~-~   89 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG--I-I   89 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS--C-E
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC--c-E
Confidence            4578999999999988877668899999988 554332 233456789999999999888777788999998762  1 1


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      ....+......+.++++.+++.++++...++.|..||. ++........    .....+..++++++|.++++...++.|
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i  164 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP----NKGSYPSFITLGSDNALWFTENQNNAI  164 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS----STTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC----CCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence            11222234557899999999988888777889999998 5544332211    223468999999999988887778899


Q ss_pred             EEEEcCCCceeee-eeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEE
Q 010669          382 KIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV  459 (504)
Q Consensus       382 ~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~  459 (504)
                      ..||. +++.... +......+.+++++++|.++++...++ |.+||. +++. ..+........+.+++++++|++.++
T Consensus       165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          165 GRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-TEFKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-EEEECCCCCCCceeEEECCCCCEEEe
Confidence            99998 6654432 233445788999999998777665555 999998 6553 33433323467899999999996666


Q ss_pred             EeCc--EEEEEeeccCccceeEEEc--cCCCCCCceeEEEEeecCcc
Q 010669          460 ASAD--IRVYQVASVKADWNCIKTF--PDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       460 ~~~d--i~vw~~~~~~~~~~~i~~~--~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ...+  |.+|+.     .+. +..+  ..+  ...+.++.+ ++|.+
T Consensus       242 ~~~~~~i~~~d~-----~g~-~~~~~~~~~--~~~~~~i~~-~~g~l  279 (299)
T 2z2n_A          242 EWGANKIGRLTS-----NNI-IEEYPIQIK--SAEPHGICF-DGETI  279 (299)
T ss_dssp             ETTTTEEEEEET-----TTE-EEEEECSSS--SCCEEEEEE-CSSCE
T ss_pred             ccCCceEEEECC-----CCc-eEEEeCCCC--CCccceEEe-cCCCE
Confidence            5343  788875     122 2222  333  567888888 87764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.70  E-value=6e-16  Score=152.89  Aligned_cols=238  Identities=7%  Similarity=-0.037  Sum_probs=158.5

Q ss_pred             EEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeE-------------------EEEeeCCCEEEEE-----
Q 010669          228 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTS-------------------VKFVTEGDLFLTG-----  283 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~-------------------l~~s~~~~~l~s~-----  283 (504)
                      .+.|+|||++|+.++.++.|++||+.+++.......+......                   +.|+|+++.++.+     
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence            3789999999999999999999999988766555544442222                   3456666655443     


Q ss_pred             eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCC------CeEEEEECCCCeEEEEeecCCCCCC
Q 010669          284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLD------NTWCFYDLSSGICLTQVSDAGTDGR  356 (504)
Q Consensus       284 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~  356 (504)
                      ..+..|.+||+.++   ... .+..+...+..+.|+| ++..|+.++.+      ..|.+||+..+.... +...   ..
T Consensus       165 ~~~~~l~~~d~~~g---~~~-~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~---~~  236 (396)
T 3c5m_A          165 NPTCRLIKVDIETG---ELE-VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEH---AE  236 (396)
T ss_dssp             CCCEEEEEEETTTC---CEE-EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCC---CT
T ss_pred             CCcceEEEEECCCC---cEE-eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eecc---CC
Confidence            45678999999874   222 2335667789999999 78877776553      368889987664332 2210   11


Q ss_pred             CCCeEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeCCCCCeEEEEEcC-CCcEEEEEe------------
Q 010669          357 PEGYTSAAFHPDGLILGTGTSE-----ALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAA------------  418 (504)
Q Consensus       357 ~~~v~~~~~~pdg~~l~~g~~d-----g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~s~~------------  418 (504)
                      ...+..++|+|||+.|+.++.+     +.|++||+.+++...... .. ... +.|+| +|.++++++            
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~  313 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADS  313 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC---------
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccc
Confidence            2357889999999977766543     449999998876543322 11 233 89999 999888754            


Q ss_pred             ----CCc-EEEEEcCCCcceeeeecCCCCC---------CeeEEEECCCCCEEEEEeCc---EEEEEeeccCccce
Q 010669          419 ----HDG-VKLWDLRKLKNFRSFESSDSET---------PTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWN  477 (504)
Q Consensus       419 ----~d~-v~vwd~~~~~~~~~~~~~~~~~---------~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~  477 (504)
                          .+. |++||+.+++.. .+..+....         .+..+.|+|+|++|+.++.+   ..||.++.......
T Consensus       314 ~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~  388 (396)
T 3c5m_A          314 YNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH  388 (396)
T ss_dssp             -CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred             cccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence                224 999999877643 333321100         25668899999998887754   67777654333333

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.70  E-value=3.1e-14  Score=134.29  Aligned_cols=224  Identities=13%  Similarity=0.183  Sum_probs=163.7

Q ss_pred             cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec------cCCcCeEEEEE-ccCCCEEEEEeC-CCeE
Q 010669          263 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK------DHTAEVQAVTV-HATNKYFVTASL-DNTW  334 (504)
Q Consensus       263 ~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~h~~~v~~l~~-~p~~~~l~s~s~-dg~i  334 (504)
                      ++-..+.+++++++++++++...++.|.+||...    .....+.      ++...+.++++ .++++++++... ++.|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i  102 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI  102 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC----cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence            4556789999999999888888899999999764    3333332      24457899999 466766666543 8899


Q ss_pred             EEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee--CCCCCeEEEEEcCCCc
Q 010669          335 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGY  412 (504)
Q Consensus       335 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~g~  412 (504)
                      .+|| .+++.+..+..    .+...+..++++|+|+++++...++.|.+||. .++.+..+.  .+...+..++++++|.
T Consensus       103 ~~~d-~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A          103 QIYN-QYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             EEEC-TTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             EEEC-CCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCC
Confidence            9999 55666655532    23356899999999998888888899999996 455555554  3445789999999999


Q ss_pred             EEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCC
Q 010669          413 YLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGT  488 (504)
Q Consensus       413 ~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~  488 (504)
                      ++++...++ |++||.. ++.+..+........+..++++++|+++++...+   |.+|+.     .++.+..+..+...
T Consensus       177 l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-----~g~~~~~~~~~~~~  250 (286)
T 1q7f_A          177 IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-----DGQLISALESKVKH  250 (286)
T ss_dssp             EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-----TSCEEEEEEESSCC
T ss_pred             EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-----CCCEEEEEcccCCC
Confidence            777776666 9999974 5555555443223578899999999988887543   777773     45666666655333


Q ss_pred             CceeEEEEeecCcc
Q 010669          489 GAASFLFLFVLGQT  502 (504)
Q Consensus       489 ~~v~~l~~~~~g~~  502 (504)
                      ..+.++++.++|++
T Consensus       251 ~~~~~i~~~~~g~l  264 (286)
T 1q7f_A          251 AQCFDVALMDDGSV  264 (286)
T ss_dssp             SCEEEEEEETTTEE
T ss_pred             CcceeEEECCCCcE
Confidence            45778999999875

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.69  E-value=5.2e-15  Score=143.62  Aligned_cols=229  Identities=12%  Similarity=0.102  Sum_probs=156.3

Q ss_pred             CCeEEEEeccCCCEEEEEeCC---C--cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC------------
Q 010669          224 PGIVSLDIHYSKDVIATGGVD---T--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD------------  286 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~d---g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d------------  286 (504)
                      ..+.++.|+|||+.|+.++.+   +  .|.+|++.+++.......+ . +..+.|+|+|+.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            357889999999998887654   3  4888888887765544433 4 9999999999988877632            


Q ss_pred             ---------------CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC-------eEEEEECCCCeE
Q 010669          287 ---------------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-------TWCFYDLSSGIC  344 (504)
Q Consensus       287 ---------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-------~i~iwd~~~~~~  344 (504)
                                     ..|.+||+.++   .....+.. . .+..+.|+|+| ++++++.++       ...+|.+.+++.
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~---~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~  210 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESE---EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE  210 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTT---EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred             cceeecCcccccCccceEEEEECCCC---eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce
Confidence                           57889998774   33233333 3 78899999999 777776542       334444445543


Q ss_pred             EEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeCCCCCeEE-EEEcCCCcEEE
Q 010669          345 LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--------ALVKIWDVKSQANVAKFDGHVGAVTA-ISFSENGYYLA  415 (504)
Q Consensus       345 ~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d--------g~I~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~g~~l~  415 (504)
                      . .+..     + ..+..+  +|||+.|+.++.+        ..|.+||  +++.......+...+.. +.|+ +| +++
T Consensus       211 ~-~l~~-----~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~  277 (347)
T 2gop_A          211 E-KMFE-----K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYF  277 (347)
T ss_dssp             E-EEEE-----E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEE
T ss_pred             E-Eecc-----C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEE
Confidence            3 3321     1 234433  9999988877644        4688888  55554444556677886 9999 88 888


Q ss_pred             EEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccCC
Q 010669          416 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       416 s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                      +++.++ +++| +.+++.. .+...  ...+.+++|+|  .++++++.+   ..||.++     ++ ...+..|
T Consensus       278 ~~~~~~~~~l~-~~~g~~~-~~~~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-----g~-~~~lt~~  339 (347)
T 2gop_A          278 TLFEEGSVNLY-IWDGEIK-PIAKG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD-----GE-EKQLTDY  339 (347)
T ss_dssp             EEEETTEEEEE-EESSSEE-EEECS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES-----SS-EEECCCT
T ss_pred             EEecCCcEEEE-EcCCceE-EEecC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-----Cc-EEEeccc
Confidence            888887 8898 7755443 33222  46789999999  666666655   5899984     22 4556665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.69  E-value=1.1e-14  Score=140.69  Aligned_cols=227  Identities=12%  Similarity=0.119  Sum_probs=166.9

Q ss_pred             ccceeEEEEeeCCCEEEEEeCC------------------------CcEEEEeCCCCCCcceeEEec-cCCcCeEEEEEc
Q 010669          265 SKKVTSVKFVTEGDLFLTGSAD------------------------KTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVH  319 (504)
Q Consensus       265 ~~~v~~l~~s~~~~~l~s~s~d------------------------g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~  319 (504)
                      -+.+.+++++++|+++++...+                        ++|.+||..++   .....+. ++-.....++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~d   99 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGKNLFYLPHGLSID   99 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECTTTCSSEEEEEEC
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCCCccCCceEEEEC
Confidence            3568999999999988887777                        47999998765   3344333 344578999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCC----CCCCCCeEEEEECC-CCCEEEEEe-CCCcEEEEEcCCCcee
Q 010669          320 ATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGT----DGRPEGYTSAAFHP-DGLILGTGT-SEALVKIWDVKSQANV  392 (504)
Q Consensus       320 p~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~----~~~~~~v~~~~~~p-dg~~l~~g~-~dg~I~iwd~~~~~~~  392 (504)
                      |+|+++++.+.++.|++||..... .+..+.....    ..+......++++| +|.++++.+ .++.|++|| .+++.+
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~  178 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV  178 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence            999988888889999999986542 3444421100    13344688999999 888888886 699999999 567776


Q ss_pred             eeeeC----------CCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEE
Q 010669          393 AKFDG----------HVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA  460 (504)
Q Consensus       393 ~~~~~----------~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~  460 (504)
                      ..+..          +-.....|+|+|+ |.++++...++ |++||..+++.+..+........+..++|+| +..+++.
T Consensus       179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~  257 (329)
T 3fvz_A          179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN  257 (329)
T ss_dssp             EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred             EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence            66642          2234899999998 66666666666 9999999888888886555566788999999 4333333


Q ss_pred             e-------Cc--EEEEEeeccCccceeEEEcc---CCCCCCceeEEEEeecCcc
Q 010669          461 S-------AD--IRVYQVASVKADWNCIKTFP---DLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       461 ~-------~d--i~vw~~~~~~~~~~~i~~~~---~h~~~~~v~~l~~~~~g~~  502 (504)
                      +       .+  +++|++    .+++.+..+.   ++  ...+.+|++.++|.+
T Consensus       258 g~~~v~~~~~~~v~~~~~----~~g~~~~~~~~~~~~--~~~p~~ia~~~dG~l  305 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNF----SSGEIIDVFKPVRKH--FDMPHDIVASEDGTV  305 (329)
T ss_dssp             CCCCTTCSCCCCEEEEET----TTCCEEEEECCSSSC--CSSEEEEEECTTSEE
T ss_pred             CCEEeccCCCcEEEEEEc----CCCeEEEEEcCCCCc--cCCeeEEEECCCCCE
Confidence            2       12  888887    5677787773   44  567899999999854

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.69  E-value=4.3e-14  Score=136.28  Aligned_cols=241  Identities=9%  Similarity=-0.023  Sum_probs=170.5

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      ....+.+. +++++++...++.|.+||..+++.+.++. .......+++++++.++++...++.|.+||..+.   ....
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~---~~~~  119 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY---EITG  119 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT---EEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC---eEEE
Confidence            35667764 45566666678999999999999988885 3466899999999855555448999999999875   4444


Q ss_pred             EeccCC-----cCeEEEEEccCCCEEEEEe--CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          305 TLKDHT-----AEVQAVTVHATNKYFVTAS--LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       305 ~~~~h~-----~~v~~l~~~p~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                      .+....     .....+++  ++..+++++  .++.|.+||+.+++....+...      .....++++|+|++++++..
T Consensus       120 ~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g------~~p~~i~~~~dG~l~v~~~~  191 (328)
T 3dsm_A          120 YIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG------IQPTSLVMDKYNKMWTITDG  191 (328)
T ss_dssp             EEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS------SCBCCCEECTTSEEEEEBCC
T ss_pred             EEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC------CCccceEEcCCCCEEEEECC
Confidence            443222     14556777  344555554  4889999999999888777531      23567899999998877765


Q ss_pred             C----------CcEEEEEcCCCceeeeeeCC-CCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCee
Q 010669          378 E----------ALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTN  446 (504)
Q Consensus       378 d----------g~I~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~  446 (504)
                      +          +.|.+||..+++....+... ......++|+|++.+|+++.. .|.+||..+++...............
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~  270 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYY  270 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEE
T ss_pred             CccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceE
Confidence            4          78999999988877666532 236899999999999888765 79999998877532111111135688


Q ss_pred             EEEECCCCCEEEEEe-----Cc--EEEEEeeccCccceeEEEccC
Q 010669          447 SVDFDHSGSYLAVAS-----AD--IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       447 ~i~~~~~g~~l~~~~-----~d--i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      .++++|++..|+++.     .+  |.+|+.    . ++.+.++..
T Consensus       271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~----~-g~~~~~i~~  310 (328)
T 3dsm_A          271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSP----Q-GKLIDEFYV  310 (328)
T ss_dssp             EEEECTTTCCEEEEECTTSSSEEEEEEECT----T-CCEEEEEEE
T ss_pred             EEEEcCCCCeEEEEcccccccCCEEEEECC----C-CCEEEEEEe
Confidence            999999555444444     33  777875    3 666766653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.69  E-value=1.1e-14  Score=141.36  Aligned_cols=236  Identities=10%  Similarity=0.088  Sum_probs=157.4

Q ss_pred             CeEEEEeccCCCEEEEEe---------CCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC---C--cEE
Q 010669          225 GIVSLDIHYSKDVIATGG---------VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---K--TVR  290 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d---g--~i~  290 (504)
                      .+....+  ||+.++...         .++.|.+||+.+++... +    ..+..+.|+|||++|+.++.+   +  .|.
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            4667777  888776542         25679999998876543 3    568899999999988877653   3  377


Q ss_pred             EEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC---------------------------CeEEEEECCCCe
Q 010669          291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---------------------------NTWCFYDLSSGI  343 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d---------------------------g~i~iwd~~~~~  343 (504)
                      +|++.++   .... +..+.. +..+.|+|+|+.|+.++.+                           ..|.+||+.+++
T Consensus        89 ~~~~~~g---~~~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           89 VADLETL---SSKK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEETTTT---EEEE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             EEECCCC---ceEE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence            7787764   3322 222334 9999999999988888642                           579999999987


Q ss_pred             EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC-------cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEE
Q 010669          344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-------LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT  416 (504)
Q Consensus       344 ~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg-------~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s  416 (504)
                      ....+..      . .+..++|+||| +++++..++       ...||.+.+++ ...+..+ ..+..+  +|+|++|+.
T Consensus       164 ~~~~l~~------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~  231 (347)
T 2gop_A          164 VIEEFEK------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILL  231 (347)
T ss_dssp             EEEEEEE------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEE
T ss_pred             EEeeecC------C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEE
Confidence            6444431      2 57889999999 777776542       33444444444 3344334 455554  999998877


Q ss_pred             EeCC--------c-EEEEEcCCCcceeeeecCCCCCCeeE-EEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccC
Q 010669          417 AAHD--------G-VKLWDLRKLKNFRSFESSDSETPTNS-VDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       417 ~~~d--------~-v~vwd~~~~~~~~~~~~~~~~~~v~~-i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      ++.+        . |.+||  +++.......  +...+.. +.|+ +| ++++++.+  ++|| +.    .++....+ .
T Consensus       232 ~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~--~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~----~g~~~~~~-~  299 (347)
T 2gop_A          232 YGKPEKKYMSEHNKLYIYD--GKEVMGILDE--VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW----DGEIKPIA-K  299 (347)
T ss_dssp             EECCSSSCCCSSCEEEEEC--SSCEEESSTT--CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE----SSSEEEEE-C
T ss_pred             EEccccCCccccceEEEEC--CCceEecccc--CCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec----CCceEEEe-c
Confidence            6632        3 88888  4443322222  2456775 8999 88 77777776  9999 85    23333333 3


Q ss_pred             CCCCCceeEEEEee
Q 010669          485 LSGTGAASFLFLFV  498 (504)
Q Consensus       485 h~~~~~v~~l~~~~  498 (504)
                      +  .+.|.++++++
T Consensus       300 ~--~~~v~~~~~s~  311 (347)
T 2gop_A          300 G--RHWIMGFDVDE  311 (347)
T ss_dssp             S--SSEEEEEEESS
T ss_pred             C--CCeEEeeeeeC
Confidence            3  56788888776

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.68  E-value=8e-15  Score=143.37  Aligned_cols=219  Identities=16%  Similarity=0.174  Sum_probs=151.6

Q ss_pred             EEEeccCCCEEEEEe----------CCCcEEEEcCCCCceEEEcccC------ccceeEEEEeeCCCEEEEEeC--CCcE
Q 010669          228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGH------SKKVTSVKFVTEGDLFLTGSA--DKTV  289 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~h------~~~v~~l~~s~~~~~l~s~s~--dg~i  289 (504)
                      .++|+|||++++++.          .++.|.+||..+++.+..+...      ......++|+|+|++|++++.  +++|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            899999999998876          3677999999998888877532      245678999999999998874  6899


Q ss_pred             EEEeCCCCCCcceeEE-eccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCC-CeEE---------------------
Q 010669          290 RVWQGSEDGNYDCKHT-LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSS-GICL---------------------  345 (504)
Q Consensus       290 ~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~-~~~~---------------------  345 (504)
                      .+||+.+.   +.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|++.. ++..                     
T Consensus       134 ~v~d~~~~---~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  208 (361)
T 2oiz_A          134 GIVDVAKG---DYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPA  208 (361)
T ss_dssp             EEEETTTT---EEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCE
T ss_pred             EEEECCCC---cEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEec
Confidence            99999875   44444 321 1 12223344443 3445555555555555433 2211                     


Q ss_pred             ----------------------------EEeecCC-----CCCCCCCeEEEEECCCCCEEEEEeC-----------CCcE
Q 010669          346 ----------------------------TQVSDAG-----TDGRPEGYTSAAFHPDGLILGTGTS-----------EALV  381 (504)
Q Consensus       346 ----------------------------~~~~~~~-----~~~~~~~v~~~~~~pdg~~l~~g~~-----------dg~I  381 (504)
                                                  ..+....     ..........++|+|+++.++++..           .+.|
T Consensus       209 ~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v  288 (361)
T 2oiz_A          209 LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEI  288 (361)
T ss_dssp             ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEE
T ss_pred             ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceE
Confidence                                        0000000     0000011112789999887776543           3489


Q ss_pred             EEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCC--cceeeeecCCCCCCeeEEEECCCCC
Q 010669          382 KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKL--KNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       382 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~--~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      .+||+.+++.+.++..+.  +.+++|+|+|++|++++.+.|.+||..++  +.+..+...  ......++++|+|.
T Consensus       289 ~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~--G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          289 WVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGA--AEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTS--CSSEEEEEECCCSC
T ss_pred             EEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccC--CCCcEEEEecCCCC
Confidence            999999999999998776  99999999999999988733999999999  888776433  45778999999985

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=3e-14  Score=135.15  Aligned_cols=227  Identities=11%  Similarity=0.074  Sum_probs=162.1

Q ss_pred             ceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeE
Q 010669          256 QIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTW  334 (504)
Q Consensus       256 ~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i  334 (504)
                      ..+..+..+.....+++|+|+++ +++++..++.|..||..++     ...+..+...+.+++++|+|+++++...++.|
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i   92 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRL   92 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCCCcEEEEecCCCeE
Confidence            33444555566788999999998 7888888999999998763     34455567789999999999988877778899


Q ss_pred             EEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE----Ee-------------CCCcEEEEEcCCCceeeeeeC
Q 010669          335 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT----GT-------------SEALVKIWDVKSQANVAKFDG  397 (504)
Q Consensus       335 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~----g~-------------~dg~I~iwd~~~~~~~~~~~~  397 (504)
                      .+||..+++........ .......+..++++|+|+++++    |+             ..+.|..||.. ++ +..+..
T Consensus        93 ~~~d~~~g~~~~~~~~~-~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~  169 (296)
T 3e5z_A           93 ERQREPGGEWESIADSF-EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIR  169 (296)
T ss_dssp             EEECSTTCCEEEEECEE-TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEEC
T ss_pred             EEEcCCCCcEEEEeecc-CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeec
Confidence            99999888754433211 1011234678999999998887    33             13456666654 43 344455


Q ss_pred             CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC-CCcc---eeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeec
Q 010669          398 HVGAVTAISFSENGYYLATAAHDG-VKLWDLR-KLKN---FRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVAS  471 (504)
Q Consensus       398 ~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~-~~~~---~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~  471 (504)
                      +......++|+|+|+.|++.+.++ |.+||+. ++..   ...+  ......+..++++++|+++++. .. |.+|+.  
T Consensus       170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~--  244 (296)
T 3e5z_A          170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA-GDGVHVLTP--  244 (296)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE-TTEEEEECT--
T ss_pred             CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc-CCeEEEECC--
Confidence            666789999999999886666666 9999997 4443   2333  2224567789999999977776 44 888885  


Q ss_pred             cCccceeEEEccCCCCCCceeEEEEe-ecCc
Q 010669          472 VKADWNCIKTFPDLSGTGAASFLFLF-VLGQ  501 (504)
Q Consensus       472 ~~~~~~~i~~~~~h~~~~~v~~l~~~-~~g~  501 (504)
                         .++.+..+..+  .. +++++|. ++|+
T Consensus       245 ---~g~~~~~~~~~--~~-~~~~~f~~~d~~  269 (296)
T 3e5z_A          245 ---DGDELGRVLTP--QT-TSNLCFGGPEGR  269 (296)
T ss_dssp             ---TSCEEEEEECS--SC-CCEEEEESTTSC
T ss_pred             ---CCCEEEEEECC--CC-ceeEEEECCCCC
Confidence               36777888776  45 8999984 6765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=1.8e-13  Score=141.00  Aligned_cols=262  Identities=14%  Similarity=0.120  Sum_probs=184.1

Q ss_pred             ccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC--CCCCcceeEEeccC
Q 010669          232 HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS--EDGNYDCKHTLKDH  309 (504)
Q Consensus       232 s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~h  309 (504)
                      ++.+.++++...++.|.++|..+++.+.++... ..+..+.|+|||+++++++.|+.|.+||+.  +.   +.+..+...
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~---~~v~~i~~G  239 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP---TTVAEIKIG  239 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC---CEEEEEECC
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCC---cEeEEEecC
Confidence            344557778888999999999999999888743 357799999999999999999999999995  43   455555543


Q ss_pred             CcCeEEEEEc----cCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCC--CC---C-CCCeEEEEECCCCCEE-EEEeC
Q 010669          310 TAEVQAVTVH----ATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGT--DG---R-PEGYTSAAFHPDGLIL-GTGTS  377 (504)
Q Consensus       310 ~~~v~~l~~~----p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~--~~---~-~~~v~~~~~~pdg~~l-~~g~~  377 (504)
                       .....++|+    |+|+++++++. ++.|.++|..+.+.+..+...+.  .+   | ...+..+..++++..+ +....
T Consensus       240 -~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          240 -SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             -SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             -CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence             346789999    69998887765 58999999999998887753211  00   1 1257788889876554 44456


Q ss_pred             CCcEEEEEcCCCceee--eeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeec-CCCCCCeeEEE-EC
Q 010669          378 EALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFES-SDSETPTNSVD-FD  451 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~-~~~~~~v~~i~-~~  451 (504)
                      +|.|.++|....+.+.  .+. ......++.|+|+|++++++... + |.++|+.+++.+..+.. .....+-..+. ++
T Consensus       319 ~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~  397 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH  397 (567)
T ss_dssp             TTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE
T ss_pred             CCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeEC
Confidence            7999999997754322  222 33457789999999998887754 3 99999999988777765 22111111222 58


Q ss_pred             CCCCE-EEEEe--Cc-EEEEEeeccC---ccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          452 HSGSY-LAVAS--AD-IRVYQVASVK---ADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       452 ~~g~~-l~~~~--~d-i~vw~~~~~~---~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      |++.. .+++.  .+ |.+++....+   ..|+.++++...  ...-..+.+.|+|+
T Consensus       398 p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~--g~g~~~i~~~p~~~  452 (567)
T 1qks_A          398 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL--GGGSLFIKTHPNSQ  452 (567)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCS
T ss_pred             CCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC--CCCCEEEEeCCCCC
Confidence            87544 44442  23 9999985422   128999988764  22334456677765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=5.8e-14  Score=150.05  Aligned_cols=257  Identities=10%  Similarity=0.015  Sum_probs=169.6

Q ss_pred             cCCCEEEEEeCC-----CcEEEEcCCCCceEEEc------ccCccceeEEEEeeCCCEEEEEeCCC-----cEEEEeCCC
Q 010669          233 YSKDVIATGGVD-----TNAVLFDRPSGQIVTTL------SGHSKKVTSVKFVTEGDLFLTGSADK-----TVRVWQGSE  296 (504)
Q Consensus       233 ~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~------~~h~~~v~~l~~s~~~~~l~s~s~dg-----~i~iwd~~~  296 (504)
                      |+|++++....+     +.+.+.+...++....+      .+|...+..++|||||++|+.++.++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            667765544322     23455554444432222      13445688999999999988765433     899999988


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCe----------------EEEEECCCCeEE--EEeecCCCCCCCC
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT----------------WCFYDLSSGICL--TQVSDAGTDGRPE  358 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~----------------i~iwd~~~~~~~--~~~~~~~~~~~~~  358 (504)
                      +   ........+ ..+..++|+|||+.|+.++.++.                |++|++.++...  ..+.   ...+..
T Consensus       161 g---~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~---~~~~~~  233 (710)
T 2xdw_A          161 A---KELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE---FPDEPK  233 (710)
T ss_dssp             T---EEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC---CTTCTT
T ss_pred             C---CCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec---cCCCCe
Confidence            5   332221122 23678999999999999988766                999999887632  2222   113345


Q ss_pred             CeEEEEECCCCCEEEEEeC-----CCcEEEEEcCC------Cc-eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC----c-
Q 010669          359 GYTSAAFHPDGLILGTGTS-----EALVKIWDVKS------QA-NVAKFDGHVGAVTAISFSENGYYLATAAHD----G-  421 (504)
Q Consensus       359 ~v~~~~~~pdg~~l~~g~~-----dg~I~iwd~~~------~~-~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d----~-  421 (504)
                      .+..+.|+|||++|+.++.     +..|++||+.+      +. ....+..+...+.. .|+++|..|+..+..    . 
T Consensus       234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~  312 (710)
T 2xdw_A          234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR  312 (710)
T ss_dssp             CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE
T ss_pred             EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE
Confidence            6789999999999888764     56899999976      43 45566666666655 488888877666542    3 


Q ss_pred             EEEEEcCCCc--ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669          422 VKLWDLRKLK--NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       422 v~vwd~~~~~--~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~  497 (504)
                      |.+||+.++.  ....+..+.....+..+.|++++.++++...+  .+||.++.  .+++.+..+..+  .+.+.++.++
T Consensus       313 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~--~~g~~~~~l~~~--~~~v~~~~~s  388 (710)
T 2xdw_A          313 LINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL--ATGALLKIFPLE--VGSVVGYSGQ  388 (710)
T ss_dssp             EEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET--TTCCEEEEECCC--SSEEEEEECC
T ss_pred             EEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC--CCCCEEEecCCC--CceEEEEecC
Confidence            9999998764  23444443222367889999777777777766  44554422  345566777766  6678888888


Q ss_pred             ecCc
Q 010669          498 VLGQ  501 (504)
Q Consensus       498 ~~g~  501 (504)
                      ++|.
T Consensus       389 ~d~~  392 (710)
T 2xdw_A          389 KKDT  392 (710)
T ss_dssp             TTCS
T ss_pred             CCCC
Confidence            7764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.65  E-value=2e-14  Score=153.27  Aligned_cols=239  Identities=10%  Similarity=-0.008  Sum_probs=159.9

Q ss_pred             cCCCCCeEEEEeccCCCEEE-----EEeCCCcEEEEcCCCCceEEEcccCccce--eEEEEeeCCCEEEEEeCCCc----
Q 010669          220 KTSKPGIVSLDIHYSKDVIA-----TGGVDTNAVLFDRPSGQIVTTLSGHSKKV--TSVKFVTEGDLFLTGSADKT----  288 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~-----sg~~dg~i~vwd~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~s~s~dg~----  288 (504)
                      .+|...+.+++|||||++|+     .|+.+..|++||+.+++.+.  ..+...+  ..++|+|||+.|+.++.|..    
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence            34555789999999999988     44445789999999987641  1122223  68999999999999988776    


Q ss_pred             ---------EEEEeCCCCCCc-ceeEEeccCCcCeEEEEEccCCCEEEEEeCCC----eEEEEECCCCeEEEEeecCCCC
Q 010669          289 ---------VRVWQGSEDGNY-DCKHTLKDHTAEVQAVTVHATNKYFVTASLDN----TWCFYDLSSGICLTQVSDAGTD  354 (504)
Q Consensus       289 ---------i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~  354 (504)
                               |++|++.++... ..+.....|...+.++.|+|+|++|+.++.++    .|.+||..++.......     
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~-----  269 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK-----  269 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE-----
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec-----
Confidence                     999999875321 23333344556789999999999998887666    67777766554333322     


Q ss_pred             CCCCCeEEEEECCCCCEEEEEe---CCCcEEEEEcCCCce--eeeeeCC--CCCeEEEEEcCCCcEEEEEeCCc-EEEEE
Q 010669          355 GRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVKSQAN--VAKFDGH--VGAVTAISFSENGYYLATAAHDG-VKLWD  426 (504)
Q Consensus       355 ~~~~~v~~~~~~pdg~~l~~g~---~dg~I~iwd~~~~~~--~~~~~~~--~~~i~~l~~s~~g~~l~s~~~d~-v~vwd  426 (504)
                       +...+....+ ++|.+++...   .++.|.+||+.++..  ...+..+  ...+..++|+ ++.++++...++ .++|.
T Consensus       270 -~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          270 -GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             -CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             -CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence             1233455556 5666444443   258899999987653  2333333  4468889998 777888888886 55554


Q ss_pred             cC-CCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc------EEEEEe
Q 010669          427 LR-KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD------IRVYQV  469 (504)
Q Consensus       427 ~~-~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d------i~vw~~  469 (504)
                      +. +++....+..+. ...+..+.++|++..++....+      +.+|++
T Consensus       347 ~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          347 ATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             EETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred             EeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            43 344445554332 3567788899999876644322      666665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=4.5e-13  Score=127.85  Aligned_cols=232  Identities=12%  Similarity=0.128  Sum_probs=162.1

Q ss_pred             CCeEEEEeccCCCEEEE-------EeCCCcEEEEcCCCCceEEEcc----cCccceeEEEEeeC-CCEEEEEeCCCcEEE
Q 010669          224 PGIVSLDIHYSKDVIAT-------GGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVTE-GDLFLTGSADKTVRV  291 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~s-------g~~dg~i~vwd~~~~~~~~~~~----~h~~~v~~l~~s~~-~~~l~s~s~dg~i~i  291 (504)
                      ....+++|+++|.++++       +..++.|.+||..+++......    ++...+.+++++++ ++++++. ..+.|.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~   96 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEE
Confidence            34678999999998888       6778899999988777543222    24567899999998 6655544 4447889


Q ss_pred             EeCCCCCCcceeEE-ec----cCCcCeEEEEEccCCCEEEEEeCC---------------CeEEEEECCCCeEEEEeecC
Q 010669          292 WQGSEDGNYDCKHT-LK----DHTAEVQAVTVHATNKYFVTASLD---------------NTWCFYDLSSGICLTQVSDA  351 (504)
Q Consensus       292 wd~~~~~~~~~~~~-~~----~h~~~v~~l~~~p~~~~l~s~s~d---------------g~i~iwd~~~~~~~~~~~~~  351 (504)
                      ||.. +   ..... ..    .....+.+++++++|+++++...+               +.|..||.. ++......  
T Consensus        97 ~d~~-g---~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--  169 (314)
T 1pjx_A           97 VQTD-G---TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--  169 (314)
T ss_dssp             EETT-S---CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--
T ss_pred             EeCC-C---CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--
Confidence            9987 3   22221 11    112458899999999888777655               577888776 54433222  


Q ss_pred             CCCCCCCCeEEEEEC----CCCCEEEEE-eCCCcEEEEEcC-CCc-----eeeeeeCCC-CCeEEEEEcCCCcEEEEEeC
Q 010669          352 GTDGRPEGYTSAAFH----PDGLILGTG-TSEALVKIWDVK-SQA-----NVAKFDGHV-GAVTAISFSENGYYLATAAH  419 (504)
Q Consensus       352 ~~~~~~~~v~~~~~~----pdg~~l~~g-~~dg~I~iwd~~-~~~-----~~~~~~~~~-~~i~~l~~s~~g~~l~s~~~  419 (504)
                          +......++|+    |+|+.++++ ..++.|.+||+. .++     ....+..+. ..+..++++++|.++++...
T Consensus       170 ----~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          170 ----AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             ----EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             ----CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence                11346789999    999755544 567899999986 343     223333343 56889999999998887766


Q ss_pred             Cc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669          420 DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV  469 (504)
Q Consensus       420 d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~  469 (504)
                      ++ |.+||..+++.+..+..+  ...+.+++|+++|++|++++.+   |..|++
T Consensus       246 ~~~i~~~d~~~g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          246 SSHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             TTEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEcCCCCcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            65 999999877776666554  3678999999999966666543   666665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.62  E-value=3.5e-13  Score=129.89  Aligned_cols=243  Identities=8%  Similarity=-0.052  Sum_probs=169.2

Q ss_pred             CCCcEEEEcCCCCceEEEcc------cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEE
Q 010669          243 VDTNAVLFDRPSGQIVTTLS------GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAV  316 (504)
Q Consensus       243 ~dg~i~vwd~~~~~~~~~~~------~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l  316 (504)
                      .++.|.+||..+++....+.      ........+.+. ++.++++...++.|.+||..+.   +.+.++. .......+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~---~~~~~i~-~~~~p~~i   89 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF---KEVGRIT-GFTSPRYI   89 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC---CEEEEEE-CCSSEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc---EEEEEcC-CCCCCcEE
Confidence            47899999999988766542      122345677774 4555666667899999999876   5555554 34668899


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCceeeee
Q 010669          317 TVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQANVAKF  395 (504)
Q Consensus       317 ~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~~~~~~~  395 (504)
                      ++++++..+++...++.|.+||..+++....+......+.......+++ .++.++++.. .++.|.+||+.+++.+..+
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i  168 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL  168 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence            9998885555544899999999999988776653211111124556677 4444444443 4889999999999888777


Q ss_pred             eCCCCCeEEEEEcCCCcEEEEEeCC----------c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcE
Q 010669          396 DGHVGAVTAISFSENGYYLATAAHD----------G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADI  464 (504)
Q Consensus       396 ~~~~~~i~~l~~s~~g~~l~s~~~d----------~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di  464 (504)
                      ... .....+.++++|++++++..+          + |.+||..+++....+.... ......++|+|++++|+++...+
T Consensus       169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~~v  246 (328)
T 3dsm_A          169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINNDI  246 (328)
T ss_dssp             ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESSSE
T ss_pred             EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEccEE
Confidence            643 346789999999987777654          5 9999999988777776532 23689999999999999887668


Q ss_pred             EEEEeeccCccceeEE--EccCCCCCCceeEEEEeec
Q 010669          465 RVYQVASVKADWNCIK--TFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       465 ~vw~~~~~~~~~~~i~--~~~~h~~~~~v~~l~~~~~  499 (504)
                      .+||..    +++...  .+..+  .....++++.|+
T Consensus       247 ~~~d~~----t~~~~~~~~~~~~--~~~p~gi~vdp~  277 (328)
T 3dsm_A          247 WRMPVE----ADRVPVRPFLEFR--DTKYYGLTVNPN  277 (328)
T ss_dssp             EEEETT----CSSCCSSCSBCCC--SSCEEEEEECTT
T ss_pred             EEEECC----CCceeeeeeecCC--CCceEEEEEcCC
Confidence            788873    233221  11211  346778888873

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.61  E-value=1.7e-12  Score=133.71  Aligned_cols=266  Identities=15%  Similarity=0.114  Sum_probs=183.0

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCC--CCceEEEcccCccceeEEEEe----eCCCEEEEEe-CCCcEEEEeCCCC
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRP--SGQIVTTLSGHSKKVTSVKFV----TEGDLFLTGS-ADKTVRVWQGSED  297 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~l~~s----~~~~~l~s~s-~dg~i~iwd~~~~  297 (504)
                      .+..+.|+|||+++++++.|+.|.+||+.  +++.+..+.... ....++|+    |+|+++++++ .+++|.|+|..+.
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence            56789999999999999999999999995  788888877543 36799999    6999877766 4589999998775


Q ss_pred             CCcceeEEecc----------CCc-CeEEEEEccCCCE-EEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEE
Q 010669          298 GNYDCKHTLKD----------HTA-EVQAVTVHATNKY-FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF  365 (504)
Q Consensus       298 ~~~~~~~~~~~----------h~~-~v~~l~~~p~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  365 (504)
                         +.+..+..          |.. .+..+..++++.. ++....+|.|.++|............    ........+.|
T Consensus       277 ---~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i----~~~~~~~d~~~  349 (567)
T 1qks_A          277 ---EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI----SAERFLHDGGL  349 (567)
T ss_dssp             ---CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE----ECCSSEEEEEE
T ss_pred             ---cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee----eccccccCceE
Confidence               44444331          212 6788888887664 44556679999999987643332221    11235778999


Q ss_pred             CCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeC-----CCCCeEEEEEcCC-CcEEEEEeC-Cc-EEEEEcCC-------
Q 010669          366 HPDGLILGTGT-SEALVKIWDVKSQANVAKFDG-----HVGAVTAISFSEN-GYYLATAAH-DG-VKLWDLRK-------  429 (504)
Q Consensus       366 ~pdg~~l~~g~-~dg~I~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~-g~~l~s~~~-d~-v~vwd~~~-------  429 (504)
                      +|+|++|+++. .++.|.++|+.+++.+..+..     |.+.-..+ ++|+ |..++++.. ++ |.++|...       
T Consensus       350 ~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~  428 (567)
T 1qks_A          350 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA  428 (567)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcccc
Confidence            99999887765 578999999999987766543     33222222 5787 444455533 34 99999987       


Q ss_pred             CcceeeeecCCCCCCeeEEEECCCCCEEEEEe--------Cc-EEEEEeecc-----CccceeEEE--ccCC-CCCCcee
Q 010669          430 LKNFRSFESSDSETPTNSVDFDHSGSYLAVAS--------AD-IRVYQVASV-----KADWNCIKT--FPDL-SGTGAAS  492 (504)
Q Consensus       430 ~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~--------~d-i~vw~~~~~-----~~~~~~i~~--~~~h-~~~~~v~  492 (504)
                      .+.++++...  ...-..+.++|++++|.+..        .+ |.|||+...     .+.++.+..  +.+. .+...+.
T Consensus       429 ~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  506 (567)
T 1qks_A          429 WKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV  506 (567)
T ss_dssp             TSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE
T ss_pred             CEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE
Confidence            5667777654  23335578899999999866        23 999998543     111122211  1111 0134788


Q ss_pred             EEEEeecCc
Q 010669          493 FLFLFVLGQ  501 (504)
Q Consensus       493 ~l~~~~~g~  501 (504)
                      .+.|.++|.
T Consensus       507 ~~~~~~~G~  515 (567)
T 1qks_A          507 QGEFNKDGT  515 (567)
T ss_dssp             EEEECTTSS
T ss_pred             eeeECCCCC
Confidence            889998885

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=7.7e-12  Score=118.19  Aligned_cols=262  Identities=9%  Similarity=0.017  Sum_probs=181.1

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE-EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ...+.+++++++|++.++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..||.. +.  .
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~--~   94 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG--F   94 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--E
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC--e
Confidence            4578899999999988887778999999987 55443 223334678999999999887777778889999977 32  1


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      ....+......+.++++.++++++++...++.|..||.. ++...... .   .....+..++++++|+++++...++.|
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~-~---~~~~~~~~i~~d~~g~l~v~~~~~~~i  169 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDL-P---NKGSYPAFITLGSDNALWFTENQNNSI  169 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEEC-S---STTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccC-C---CCCCCceeEEECCCCCEEEEecCCCeE
Confidence            222222234678999999999988887778899999988 55442221 1   223468999999999977777668899


Q ss_pred             EEEEcCCCceeee-eeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEE
Q 010669          382 KIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV  459 (504)
Q Consensus       382 ~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~  459 (504)
                      ..||. +++.... ...+...+..++++++|.++++...++ |.+||. ++.... +........+.+++++++|++.++
T Consensus       170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~  246 (300)
T 2qc5_A          170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDIPTPNARPHAITAGKNSEIWFT  246 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EECCCCCCCceEEEECCCCCEEEe
Confidence            99998 5554332 223445789999999998777766565 999998 444322 322222456889999999986666


Q ss_pred             EeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          460 ASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       460 ~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ...+  |..|+.   ..... ...+...  ...+.++.+.++|.+
T Consensus       247 ~~~~~~i~~~~~---~g~~~-~~~~~~~--~~~~~~i~~~~~g~l  285 (300)
T 2qc5_A          247 EWGANQIGRITN---DNTIQ-EYQLQTE--NAEPHGITFGKDGSV  285 (300)
T ss_dssp             ETTTTEEEEECT---TSCEE-EEECCST--TCCCCCEEECTTSCE
T ss_pred             ccCCCeEEEECC---CCcEE-EEECCcc--CCccceeEeCCCCCE
Confidence            5443  777764   11111 1122322  456788888888764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.60  E-value=7.2e-12  Score=118.31  Aligned_cols=234  Identities=12%  Similarity=0.027  Sum_probs=167.6

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE-EEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ...+.+++++++|.++++...++.|..|+.. ++.. ..+......+.++++.+++.++++...++.|.+||. ++.  .
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~--~  131 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK--I  131 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC--E
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC--E
Confidence            4578999999999988887778899999976 4432 222234557899999999988887777889999998 321  1


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      .......+...+.++++.++++.+++...++.|..||. +++.......    .....+..++++++|.++++...++.|
T Consensus       132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i  206 (299)
T 2z2n_A          132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIP----TPASGPVGITKGNDDALWFVEIIGNKI  206 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS----STTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCC----CCCCcceeEEECCCCCEEEEccCCceE
Confidence            11222334467899999999988887777889999999 6654432111    223468899999999988777778899


Q ss_pred             EEEEcCCCceeee-eeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEE
Q 010669          382 KIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV  459 (504)
Q Consensus       382 ~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~  459 (504)
                      .+||. +++.... ...+...+.+++++++|.++++...++ |..||. ++. +..+........+.++++ ++|.+.++
T Consensus       207 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~  282 (299)
T 2z2n_A          207 GRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFA  282 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEE
T ss_pred             EEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEE
Confidence            99999 6654322 233456789999999998766664554 999998 343 344433333457899999 88888777


Q ss_pred             EeCc-EEEEEe
Q 010669          460 ASAD-IRVYQV  469 (504)
Q Consensus       460 ~~~d-i~vw~~  469 (504)
                      .+.+ +..++.
T Consensus       283 ~~~~~l~~~~~  293 (299)
T 2z2n_A          283 MECDKIGKLTL  293 (299)
T ss_dssp             ETTTEEEEEEE
T ss_pred             ecCCcEEEEEc
Confidence            6555 777775

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=1.5e-13  Score=146.43  Aligned_cols=254  Identities=15%  Similarity=0.027  Sum_probs=162.0

Q ss_pred             cCCCEEEEEeCCC-----cEEEEcCCCCceEEEcc------cCccceeEEEEeeCCCEEE-----EEeCCCcEEEEeCCC
Q 010669          233 YSKDVIATGGVDT-----NAVLFDRPSGQIVTTLS------GHSKKVTSVKFVTEGDLFL-----TGSADKTVRVWQGSE  296 (504)
Q Consensus       233 ~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~------~h~~~v~~l~~s~~~~~l~-----s~s~dg~i~iwd~~~  296 (504)
                      |+|++++....++     .+.+.+...++....+.      +|...+..++|||||++|+     .|+.+.+|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            6777766655433     24444444444322222      4556789999999999888     344457899999988


Q ss_pred             CCCcceeEEeccCCcCe--EEEEEccCCCEEEEEeCCCe-------------EEEEECCCCeE--EEEeecCCCCCCCCC
Q 010669          297 DGNYDCKHTLKDHTAEV--QAVTVHATNKYFVTASLDNT-------------WCFYDLSSGIC--LTQVSDAGTDGRPEG  359 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v--~~l~~~p~~~~l~s~s~dg~-------------i~iwd~~~~~~--~~~~~~~~~~~~~~~  359 (504)
                      +.   ...  ..+...+  ..++|+|||+.|+.++.|..             |++|++.++..  ...+.   ...+...
T Consensus       157 g~---~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~---~~~~~~~  228 (695)
T 2bkl_A          157 GE---WSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE---RTGDPTT  228 (695)
T ss_dssp             CC---BCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC---CCCCTTC
T ss_pred             CC---CcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe---cCCCCEE
Confidence            63   210  1111222  67899999999999998776             99999998762  22222   1134457


Q ss_pred             eEEEEECCCCCEEEEEeCCC----cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeC---Cc-EEEEEcCCCc
Q 010669          360 YTSAAFHPDGLILGTGTSEA----LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH---DG-VKLWDLRKLK  431 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~~dg----~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~---d~-v~vwd~~~~~  431 (504)
                      +..+.|+|||++|+.++.++    .|++||..++. ...+..+...+....| ++|.+++.+..   ++ |.+||+.++.
T Consensus       229 ~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          229 FLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             EEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             EEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            88999999999988877666    67777765554 3444445556666667 56664444442   34 9999998765


Q ss_pred             c--eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          432 N--FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       432 ~--~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      .  ...+..+.....+..++|+ ++.++++...+  .+||.++.   .+..+..+..+ +.+.+..+.++++|.
T Consensus       307 ~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~---~g~~~~~l~~~-~~~~v~~~~~s~d~~  375 (695)
T 2bkl_A          307 RASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL---KGKPVRTVQLP-GVGAASNLMGLEDLD  375 (695)
T ss_dssp             GGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET---TCCEEEECCCS-SSSEECCCBSCTTCS
T ss_pred             ccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC---CCCeeEEecCC-CCeEEEEeecCCCCC
Confidence            3  2334333224467888888 66677777766  77887742   24445555433 245566666666664

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.58  E-value=1.3e-15  Score=114.04  Aligned_cols=52  Identities=23%  Similarity=0.399  Sum_probs=49.7

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      |.|+||+++|++||+++ |||+|||.+|++|+..+++||+|+++|+.++|++-
T Consensus        15 ~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn   66 (85)
T 2kr4_A           15 FRDPLMDTLMTDPVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPV   66 (85)
T ss_dssp             TBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred             eECcccCchhcCCeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchH
Confidence            57999999999999997 99999999999999999999999999999999876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.56  E-value=5.6e-13  Score=143.10  Aligned_cols=237  Identities=9%  Similarity=0.038  Sum_probs=155.1

Q ss_pred             CCCeEEEEeccCCCEEEEEeCC-----CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCc---------
Q 010669          223 KPGIVSLDIHYSKDVIATGGVD-----TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT---------  288 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~---------  288 (504)
                      ...+..++|||||++|+.++.+     ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.         
T Consensus       162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            3468899999999998877644     3699999999987653 212223467899999 88888876654         


Q ss_pred             -----EEEEeCCCCCCc-ceeEEeccCCcCeEEEEEccCCCEEEEEeCCC-----eEEEEECCCCeE--EEEeecCCCCC
Q 010669          289 -----VRVWQGSEDGNY-DCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-----TWCFYDLSSGIC--LTQVSDAGTDG  355 (504)
Q Consensus       289 -----i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-----~i~iwd~~~~~~--~~~~~~~~~~~  355 (504)
                           |.+|++.++... ..+.....+...+..+.|+|+|++|+..+.++     .|.+||+.++..  ...+..     
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-----  314 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-----  314 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-----
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-----
Confidence                 889998764211 12222223334688999999999988877544     899999988721  333331     


Q ss_pred             CCCCeEEEEECCCCCEEEEEeCC----CcEEEEEcCCC--ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC
Q 010669          356 RPEGYTSAAFHPDGLILGTGTSE----ALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR  428 (504)
Q Consensus       356 ~~~~v~~~~~~pdg~~l~~g~~d----g~I~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~  428 (504)
                      +...+... ++|+|..|+..+.+    +.|.+||+.++  .....+..+...+..+.|+ ++.++++...++ .+||.+.
T Consensus       315 ~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          315 DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            12233333 34888888877653    45999999875  2333334445567778887 667778877776 4444332


Q ss_pred             -CCcceeeeecCCCCCCeeEEEECCCCCEEEEE-e-Cc----EEEEEe
Q 010669          429 -KLKNFRSFESSDSETPTNSVDFDHSGSYLAVA-S-AD----IRVYQV  469 (504)
Q Consensus       429 -~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~-~-~d----i~vw~~  469 (504)
                       ++.....+..+. ...+..+.++|++..|+.. + ..    +.+||+
T Consensus       393 ~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          393 LDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             TTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             CCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence             345555554422 4568889999998755533 2 22    666665

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.56  E-value=1.3e-13  Score=134.01  Aligned_cols=171  Identities=15%  Similarity=0.078  Sum_probs=133.7

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc-----------eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-----------IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-----------~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd  293 (504)
                      +++.+++++...++++|+.++ +.+|++.+..           ..... .+.+ |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            588999999999999999885 6669754322           11122 3556 999999  88999998 889999999


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                      +.+..   .......|...+.++.+.+.  .+++++.||.+.+||+.++.... +.        ..|+|++|+|+|  ++
T Consensus       113 v~sl~---~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~--------~~Vs~v~WSpkG--~~  176 (388)
T 1xip_A          113 LEELS---EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LA--------QNVTSFDVTNSQ--LA  176 (388)
T ss_dssp             SSSTT---CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EE--------ESEEEEEECSSE--EE
T ss_pred             chhhh---ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-cc--------CCceEEEEcCCc--eE
Confidence            98753   33345567777888877654  38899999999999999887654 22        369999999999  67


Q ss_pred             EEeCCCcEEEEEcCCCce--eeee------e---CCCCCeEEEEEcCCCcEEEEE
Q 010669          374 TGTSEALVKIWDVKSQAN--VAKF------D---GHVGAVTAISFSENGYYLATA  417 (504)
Q Consensus       374 ~g~~dg~I~iwd~~~~~~--~~~~------~---~~~~~i~~l~~s~~g~~l~s~  417 (504)
                      .|..||.+++|+...+..  ..++      .   +|...|.+|.|.+++.++++-
T Consensus       177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            899999999999877664  4455      2   367889999999999998874

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.55  E-value=2.4e-15  Score=116.02  Aligned_cols=52  Identities=23%  Similarity=0.422  Sum_probs=49.7

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      |.|+||+++|++||++| |||+|||.+|++|+..+++||+|+++|+.++|+|-
T Consensus        30 ~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn   81 (100)
T 2kre_A           30 FRDPLMDTLMTDPVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPV   81 (100)
T ss_dssp             TBCTTTCSBCSSEEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEEC
T ss_pred             hCCcCccCcccCCeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhceEC
Confidence            57999999999999997 99999999999999989999999999999999876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=9.3e-13  Score=123.43  Aligned_cols=208  Identities=13%  Similarity=0.080  Sum_probs=154.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCC-cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 010669          276 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT-AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD  354 (504)
Q Consensus       276 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  354 (504)
                      .+++|++++.|+.|.+||..++   +.+..+..+. ..+.++.+.|+|++++  +.++.|..||. +++.+..+..    
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~----   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK---EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA----   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT---EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC----
T ss_pred             CCcEEEeeCCCCEEEEEECCCC---eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC----
Confidence            4678999999999999998776   5666666655 4688999999999888  45788999999 7888887763    


Q ss_pred             CCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCceeeeee------CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEE
Q 010669          355 GRPEGYTSAAFHPDGLILGTGTS-EALVKIWDVKSQANVAKFD------GHVGAVTAISFSENGYYLATAAHDG-VKLWD  426 (504)
Q Consensus       355 ~~~~~v~~~~~~pdg~~l~~g~~-dg~I~iwd~~~~~~~~~~~------~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd  426 (504)
                      .....+.++.+.++|+++++.+. ++.|..+|. +++.+..+.      .+......+++.++|.++++...++ |..||
T Consensus        74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d  152 (276)
T 3no2_A           74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA  152 (276)
T ss_dssp             CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred             CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence            12246889999999999999887 788888885 777766654      1223455678899999999998888 99999


Q ss_pred             cCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCC----CCceeEEEEeecC
Q 010669          427 LRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG----TGAASFLFLFVLG  500 (504)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~----~~~v~~l~~~~~g  500 (504)
                      .. ++.+..+...   ..+.++.+.++|+++++++.+  +..++.    .+++.+-++..+..    -..++++...++|
T Consensus       153 ~~-G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~----~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G  224 (276)
T 3no2_A          153 PN-GQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNL----ESNRIVRRVNANDIEGVQLFFVAQLFPLQNG  224 (276)
T ss_dssp             TT-SCEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECT----TTCCEEEEEEGGGSBSCCCSEEEEEEECTTS
T ss_pred             CC-CCEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeC----cCCcEEEEecCCCCCCccccccccceEcCCC
Confidence            88 9988888764   356678889999999888776  555554    33555555543210    1225566666665


Q ss_pred             cc
Q 010669          501 QT  502 (504)
Q Consensus       501 ~~  502 (504)
                      .+
T Consensus       225 ~i  226 (276)
T 3no2_A          225 GL  226 (276)
T ss_dssp             CE
T ss_pred             CE
Confidence            54

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.54  E-value=2.4e-12  Score=124.70  Aligned_cols=254  Identities=12%  Similarity=0.078  Sum_probs=174.2

Q ss_pred             EEEeccCCCEEEEEe----------CCCcEEEEcCCCCceEEEcccCc-------cceeEEEEeeCCCEEEEEeC--CCc
Q 010669          228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGHS-------KKVTSVKFVTEGDLFLTGSA--DKT  288 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~h~-------~~v~~l~~s~~~~~l~s~s~--dg~  288 (504)
                      .+.++|||++++++.          .++.|.+||..+++.+.++.-..       .....+.|+|||++++++..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999877765          36789999999999888875321       24567999999999888864  689


Q ss_pred             EEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCCCCCCe-EEEEEC
Q 010669          289 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-GICLTQVSDAGTDGRPEGY-TSAAFH  366 (504)
Q Consensus       289 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v-~~~~~~  366 (504)
                      |.++|+.+.   +.+.++... + . ...+....+.+++.+.||.+.+.++.+ ++...... .........+ ....|.
T Consensus       162 VsVID~~t~---~vv~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~~~~~~~~~~~~~~~~  234 (386)
T 3sjl_D          162 VGVVDLEGK---AFKRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-EVFHPEDEFLINHPAYS  234 (386)
T ss_dssp             EEEEETTTT---EEEEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-CCCSCTTSCBCSCCEEE
T ss_pred             EEEEECCCC---cEEEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-ceeccccccccccceeE
Confidence            999999886   555655422 1 1 222333456777888999999999976 55432211 1111111222 224564


Q ss_pred             -CCCCEEEEEeCCCcEEEEEcCCCc--eeeeee---------C-CCCCeEEEEEcCCCcEEEEEeC----------Cc-E
Q 010669          367 -PDGLILGTGTSEALVKIWDVKSQA--NVAKFD---------G-HVGAVTAISFSENGYYLATAAH----------DG-V  422 (504)
Q Consensus       367 -pdg~~l~~g~~dg~I~iwd~~~~~--~~~~~~---------~-~~~~i~~l~~s~~g~~l~s~~~----------d~-v  422 (504)
                       ++|++++ .+.+|.|+++|+....  .+..+.         + ..+....+++++++..++....          .+ |
T Consensus       235 ~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V  313 (386)
T 3sjl_D          235 QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV  313 (386)
T ss_dssp             TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred             cCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence             6887655 4558999999997654  222221         0 1223445778998888877642          13 9


Q ss_pred             EEEEcCCCcceeeeecCCCCCCeeEEEECCCCC-EEEEEeC-c--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          423 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       423 ~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~~~-d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      .++|+.+++.+..+...   ..++++.|++|++ +|++... +  +.++|.    .+++.++++..   .+.-..|.+++
T Consensus       314 ~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~----~t~k~~~~i~~---~~~p~~l~~s~  383 (386)
T 3sjl_D          314 VVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDA----ESGEELRSVNQ---LGHGPQVITTA  383 (386)
T ss_dssp             EEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEET----TTCCEEEEECC---CCSSCCEEEEC
T ss_pred             EEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEEC----CCCcEEEEecC---CCCCceeEECC
Confidence            99999999999998874   4788999999997 7776543 2  999998    77888888866   34456666666


Q ss_pred             c
Q 010669          499 L  499 (504)
Q Consensus       499 ~  499 (504)
                      |
T Consensus       384 d  384 (386)
T 3sjl_D          384 D  384 (386)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.53  E-value=1.4e-11  Score=122.27  Aligned_cols=240  Identities=12%  Similarity=0.100  Sum_probs=160.8

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCCcc
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYD  301 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~  301 (504)
                      .....++|+++++++++...++.|++||..++......... .... ++|+++++.|+++..++  .|.+|+........
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            45789999999998888888899999999877765554432 2334 99999999988888766  78888876542111


Q ss_pred             eeEEecc-CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCC--eEEEEECC-CCCEEEEEeC
Q 010669          302 CKHTLKD-HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG--YTSAAFHP-DGLILGTGTS  377 (504)
Q Consensus       302 ~~~~~~~-h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--v~~~~~~p-dg~~l~~g~~  377 (504)
                      ....+.. ....+.+++++|++..|+.+..++.|..||..++....... ....+....  ...++|+| ++.++++-..
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~-~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQ-LELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEE-CCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEec-ccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            1111112 44667899999965556667788999999998776433211 001111111  23899999 5677777777


Q ss_pred             CCcEEEEEcCCCceeeeeeCCC---------------CCeEEEEEcCCCcEEEEEe-CCc-EEEEEcCCCcceeeeecCC
Q 010669          378 EALVKIWDVKSQANVAKFDGHV---------------GAVTAISFSENGYYLATAA-HDG-VKLWDLRKLKNFRSFESSD  440 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~---------------~~i~~l~~s~~g~~l~s~~-~d~-v~vwd~~~~~~~~~~~~~~  440 (504)
                      ++.|+.||....  +..+.++.               .....++|+++|.++++-. .+. |+.||+.++.. ..+....
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~  364 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQV  364 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECT
T ss_pred             CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCC
Confidence            899999997543  33333221               3578999999999666665 555 99999877654 3332210


Q ss_pred             -------------CCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          441 -------------SETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       441 -------------~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                                   .-.....++++++|.++++-..+  |+.+.+
T Consensus       365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                         01357899999997766666555  555543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.53  E-value=1.7e-12  Score=120.99  Aligned_cols=200  Identities=11%  Similarity=-0.007  Sum_probs=145.3

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  303 (504)
                      ..+.+++++++|+++++.. ++.|.+||................+.+++++++|+++++...++.|.+|+..+.   ...
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~---~~~  142 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK---TQT  142 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC---SCE
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc---eeE
Confidence            4577899999999766665 889999998765443222233356899999999998777777889999975442   222


Q ss_pred             EEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 010669          304 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI  383 (504)
Q Consensus       304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~i  383 (504)
                      .........+.+++++++|+++++...++.|.+||...........     .....+..++++++|.++++...++.|.+
T Consensus       143 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~p~~i~~d~~g~l~v~~~~~~~v~~  217 (270)
T 1rwi_B          143 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-----TDITAPWGIAVDEAGTVYVTEHNTNQVVK  217 (270)
T ss_dssp             ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-----SSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred             eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc-----cCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence            2122233467889999999977777778899999998765443221     22256889999999988888778899999


Q ss_pred             EEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc
Q 010669          384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN  432 (504)
Q Consensus       384 wd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~  432 (504)
                      ||............+...+.+++++++|.++++...++ |++|++...+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          218 LLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             ECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             EcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            99866543332223335789999999999777777777 99999876543

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.53  E-value=4.9e-15  Score=113.80  Aligned_cols=52  Identities=33%  Similarity=0.449  Sum_probs=49.3

Q ss_pred             CccccCCCCCCCceEeCCCC-eeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSG-LLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      |.|+||+++|++||+++ +| |+|||.+|++|+.++++||+|+++|+.++|+|-
T Consensus        23 ~~CpI~~~~m~dPV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn   75 (98)
T 1wgm_A           23 FLDPIMSTLMCDPVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN   75 (98)
T ss_dssp             TBCTTTCSBCSSEEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred             cCCcCccccccCCeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEc
Confidence            57999999999999997 78 999999999999999999999999999999876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=6.3e-12  Score=119.24  Aligned_cols=224  Identities=13%  Similarity=0.069  Sum_probs=152.9

Q ss_pred             CeEEEEeccCC-CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669          225 GIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       225 ~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  303 (504)
                      -.-+..|++++ .++++...++.|+.||..+++. ..+. ....+.+++++++|+++++ . ++.|.+||..++. ...+
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~-~~~~   88 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS-AVVL   88 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE-EEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc-EEEE
Confidence            35578899964 5667777789999999987765 2332 3467999999999995554 4 5679999987642 1222


Q ss_pred             EEecc--CCcCeEEEEEccCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669          304 HTLKD--HTAEVQAVTVHATNKYFVTASL-----------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       304 ~~~~~--h~~~v~~l~~~p~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~  370 (504)
                      .....  ....+.+++++|+|+++++...           .+.|..+|.. +.......      .....+.++|+||++
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~------~~~~pngi~~spdg~  161 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD------QVDISNGLDWSLDHK  161 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE------EESBEEEEEECTTSC
T ss_pred             EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee------ccccccceEEcCCCC
Confidence            22111  1245789999999997665432           1344444443 33222221      113467899999998


Q ss_pred             EEE-EEeCCCcEEEEEc--CCCce-----eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCC
Q 010669          371 ILG-TGTSEALVKIWDV--KSQAN-----VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS  441 (504)
Q Consensus       371 ~l~-~g~~dg~I~iwd~--~~~~~-----~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~  441 (504)
                      .|+ +.+.++.|.+||+  .++..     +..+..+.+.+..++++++|++.++...++ |.+||..+++.+..+..+  
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p--  239 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP--  239 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS--
T ss_pred             EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC--
Confidence            664 5556789999997  44432     223333446788999999998777776666 999999989888888765  


Q ss_pred             CCCeeEEEEC-CCCCEEEEEeC
Q 010669          442 ETPTNSVDFD-HSGSYLAVASA  462 (504)
Q Consensus       442 ~~~v~~i~~~-~~g~~l~~~~~  462 (504)
                      ...+++++|. |+++.|++++.
T Consensus       240 ~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          240 VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             SSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCceEEEEeCCCCCEEEEEcC
Confidence            4578999998 88887776654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.51  E-value=9.9e-11  Score=110.48  Aligned_cols=233  Identities=10%  Similarity=0.038  Sum_probs=164.2

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEE-EcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ...+.+++++++|++.++...++.|..||.. ++... .+......+.++++.++++++++...++.|..||.. +.  .
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~--~  136 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT--I  136 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC--E
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC--E
Confidence            3568899999999988877778899999987 55432 223234678999999999888877778899999876 31  1


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      ....+......+.++++.++++.+++...++.|..||. +++... +..   ......+..++++++|.++++....+.|
T Consensus       137 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i  211 (300)
T 2qc5_A          137 YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPL---PTNAAAPVGITSGNDGALWFVEIMGNKI  211 (300)
T ss_dssp             EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC---SSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeC---CCCCCCcceEEECCCCCEEEEccCCCEE
Confidence            11223334467899999999997777666889999998 555443 221   1223468899999999888877777889


Q ss_pred             EEEEcCCCceeee-eeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEE
Q 010669          382 KIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV  459 (504)
Q Consensus       382 ~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~  459 (504)
                      .+||. +++.... +..+...+.+++++++|.++++...++ |..||. ++.. ..+........+.+++++++|.+.++
T Consensus       212 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~  288 (300)
T 2qc5_A          212 GRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTI-QEYQLQTENAEPHGITFGKDGSVWFA  288 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCE-EEEECCSTTCCCCCEEECTTSCEEEE
T ss_pred             EEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcE-EEEECCccCCccceeEeCCCCCEEEE
Confidence            99998 4443332 233456789999999998666665545 999998 3433 33433322456889999999987666


Q ss_pred             EeCcEEEEEe
Q 010669          460 ASADIRVYQV  469 (504)
Q Consensus       460 ~~~di~vw~~  469 (504)
                      .. . .|+.+
T Consensus       289 ~~-~-~i~~~  296 (300)
T 2qc5_A          289 LK-C-KIGKL  296 (300)
T ss_dssp             CS-S-EEEEE
T ss_pred             cc-C-ceEEe
Confidence            55 5 44444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.51  E-value=7.7e-11  Score=115.29  Aligned_cols=239  Identities=10%  Similarity=-0.014  Sum_probs=163.3

Q ss_pred             EEEeccCCCEEEEEe----------CCCcEEEEcCCCCceEEEcccC-------ccceeEEEEeeCCCEEEEEeC--CCc
Q 010669          228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGH-------SKKVTSVKFVTEGDLFLTGSA--DKT  288 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~s~s~--dg~  288 (504)
                      .+.++|||++++++.          .++.|.+||..+.+.+..+...       ......+.|+|||++|++++.  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999988875          3678999999988887766422       123468999999999998874  578


Q ss_pred             EEEEeCCCCCCcceeEE-eccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCCCCCCeEEEEE
Q 010669          289 VRVWQGSEDGNYDCKHT-LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAG-TDGRPEGYTSAAF  365 (504)
Q Consensus       289 i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~  365 (504)
                      |.++| .++   +.+.. +.. .+   ++.+.|++ ..+++.+.||.+.++|. +++......... ..+.........+
T Consensus       150 v~viD-~t~---~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~  220 (373)
T 2mad_H          150 VGLVV-QGG---SSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQ  220 (373)
T ss_pred             EEEEE-CCC---CEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeeccee
Confidence            99999 775   44454 432 12   24455555 45667778999999999 777663322000 0011111223456


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCCCc--eeeeeeC----------CCCCeEEEEEcCCCcEEEEEeC----------Cc-E
Q 010669          366 HPDGLILGTGTSEALVKIWDVKSQA--NVAKFDG----------HVGAVTAISFSENGYYLATAAH----------DG-V  422 (504)
Q Consensus       366 ~pdg~~l~~g~~dg~I~iwd~~~~~--~~~~~~~----------~~~~i~~l~~s~~g~~l~s~~~----------d~-v  422 (504)
                      .+++..++..+..+.+.+.|+....  .+..+..          .......+.+++++..++++..          .+ |
T Consensus       221 ~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V  300 (373)
T 2mad_H          221 ANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV  300 (373)
T ss_pred             EecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence            6665554444578899999997553  2222221          1123445789999888777643          23 9


Q ss_pred             EEEEcCCCcceeeeecCCCCCCeeEEEECCCCC-EEEEEeC-c--EEEEEeeccCccceeEEEc
Q 010669          423 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA-D--IRVYQVASVKADWNCIKTF  482 (504)
Q Consensus       423 ~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~~~-d--i~vw~~~~~~~~~~~i~~~  482 (504)
                      .++|+.+++.+..+...   ....+++|+|||+ +++++.. +  +.+||.    .+++.+.++
T Consensus       301 ~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~----~t~~vv~~i  357 (373)
T 2mad_H          301 TSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDA----GAGDQDQST  357 (373)
T ss_pred             EEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEEC----CCCCEEeee
Confidence            99999999998988753   4689999999999 6777653 3  999998    678888774

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.49  E-value=1.3e-11  Score=117.44  Aligned_cols=229  Identities=10%  Similarity=0.088  Sum_probs=157.5

Q ss_pred             CCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669          224 PGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       224 ~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      .......|+++|+ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.. + ....
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g-~~~~  120 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G-QAHL  120 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEE
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C-CEEE
Confidence            3467889999998 6677778899999987 454 34555566778999999999976666566789999875 2 2121


Q ss_pred             eE-EeccC-CcCeEEEEEccCCCEEEE----EeC-------------CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEE
Q 010669          303 KH-TLKDH-TAEVQAVTVHATNKYFVT----ASL-------------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA  363 (504)
Q Consensus       303 ~~-~~~~h-~~~v~~l~~~p~~~~l~s----~s~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  363 (504)
                      +. ...+. ...+.++.++|+|+++++    |..             .+.|..||..+++..... .  .    .....+
T Consensus       121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~--~----~~p~gl  193 (305)
T 3dr2_A          121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D--L----DHPNGL  193 (305)
T ss_dssp             EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E--E----SSEEEE
T ss_pred             EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c--C----CCCcce
Confidence            11 11111 134678999999998886    332             256888887666543322 1  1    246789


Q ss_pred             EECCCCCEEEEEeCC------CcEEEEEcCCCce--eeee-eCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCccee
Q 010669          364 AFHPDGLILGTGTSE------ALVKIWDVKSQAN--VAKF-DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR  434 (504)
Q Consensus       364 ~~~pdg~~l~~g~~d------g~I~iwd~~~~~~--~~~~-~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~  434 (504)
                      +|+||++.|+++...      +.|.+||+..+..  ...+ ....+.+..++++++|++.+ ++.++|.+||. .++.+.
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~gv~~~~~-~g~~~~  271 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTGVCVFDS-DGQLLG  271 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSEEEEECT-TSCEEE
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCcEEEECC-CCCEEE
Confidence            999999988777665      7899999875431  1111 11234566789999999544 44567999998 567777


Q ss_pred             eeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEE
Q 010669          435 SFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQ  468 (504)
Q Consensus       435 ~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~  468 (504)
                      .+..+.   .+.+++|+++++.|++++.+ +..++
T Consensus       272 ~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          272 HIPTPG---TASNCTFDQAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             EEECSS---CCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred             EEECCC---ceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence            776642   58899999999988888877 44333

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.48  E-value=6.2e-11  Score=113.99  Aligned_cols=221  Identities=12%  Similarity=0.065  Sum_probs=149.4

Q ss_pred             eEEEEeccCCC-EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          226 IVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       226 I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      ..+..|+|++. ++++...++.|..||..+++.. .+. ....+.+++|+++|+++++. .+ .|.+||..++. ...+.
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~-~~~~~  125 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV-LTLHA  125 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC-EEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc-EEEEe
Confidence            46788999754 6667767889999999877543 333 34679999999999877654 44 49999987642 12121


Q ss_pred             Eecc--CCcCeEEEEEccCCCEEEEEeC------CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE-
Q 010669          305 TLKD--HTAEVQAVTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-  375 (504)
Q Consensus       305 ~~~~--h~~~v~~l~~~p~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g-  375 (504)
                      ....  ....+.++.++|+|+++++...      .+.|..+|  +++......      .......++|+|||+.++.+ 
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~------~~~~~~~i~~s~dg~~lyv~~  197 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA------DISIPNSICFSPDGTTGYFVD  197 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE------EESSEEEEEECTTSCEEEEEE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC------CCcccCCeEEcCCCCEEEEEE
Confidence            1111  1235889999999997765542      24566666  454433221      11246789999999866554 


Q ss_pred             eCCCcEEEEEcC--CC-ce-----eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCee
Q 010669          376 TSEALVKIWDVK--SQ-AN-----VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN  446 (504)
Q Consensus       376 ~~dg~I~iwd~~--~~-~~-----~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~  446 (504)
                      +.++.|.+||+.  ++ ..     +..+......+..++++++|.++++...++ |.+||. +++.+..+..+  ...+.
T Consensus       198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~--~~~~~  274 (326)
T 2ghs_A          198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--GKQTT  274 (326)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--CSBEE
T ss_pred             CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC--CCCcE
Confidence            557899999986  55 31     222333345678899999998777765555 999998 56666666654  35689


Q ss_pred             EEEEC-CCCCEEEEEeC
Q 010669          447 SVDFD-HSGSYLAVASA  462 (504)
Q Consensus       447 ~i~~~-~~g~~l~~~~~  462 (504)
                      +++|+ +++..|++++.
T Consensus       275 ~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          275 CPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEESTTSCEEEEEEB
T ss_pred             EEEEecCCCCEEEEEec
Confidence            99998 88887766554

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.47  E-value=2.4e-14  Score=121.39  Aligned_cols=52  Identities=37%  Similarity=0.629  Sum_probs=48.9

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCC-CCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGK-CPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~   53 (504)
                      |+|+||+++|.+||++| |||+|||.+|++|+..+|. ||+|+++|+..+|+|-
T Consensus       107 f~CPI~~elm~DPV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN  159 (179)
T 2f42_A          107 LCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN  159 (179)
T ss_dssp             GBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred             hcccCccccCCCCeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence            57999999999999996 9999999999999998875 9999999999999886

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=3e-14  Score=109.12  Aligned_cols=53  Identities=28%  Similarity=0.471  Sum_probs=47.9

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC------CCCCCCCC---CCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG------KCPVTGEP---LTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~~~~---~~~~~~~~~   53 (504)
                      |.|+||+++|++||++|++||+|||.+|++|+.+++      +||+||.+   |+.++|++-
T Consensus         8 ~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn   69 (94)
T 2yu4_A            8 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD   69 (94)
T ss_dssp             CBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred             eECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence            579999999999999977999999999999999862      89998887   888898765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.47  E-value=1.2e-11  Score=121.99  Aligned_cols=238  Identities=12%  Similarity=0.069  Sum_probs=160.9

Q ss_pred             cCCCEEEEEeC-C----CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe----------CCCcEEEEeCCCC
Q 010669          233 YSKDVIATGGV-D----TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSED  297 (504)
Q Consensus       233 ~~~~~l~sg~~-d----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s----------~dg~i~iwd~~~~  297 (504)
                      ++++.+++... +    +.|.++|..+++.+.++.....+  .++++||+++++++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            35554444433 2    69999999999999998755555  899999999888776          3678999999886


Q ss_pred             CCcceeEEeccC-------CcCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCC-C-CCCCeEEE---
Q 010669          298 GNYDCKHTLKDH-------TAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTD-G-RPEGYTSA---  363 (504)
Q Consensus       298 ~~~~~~~~~~~h-------~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~-~-~~~~v~~~---  363 (504)
                         +.+..+.-.       ......+.|+|+|++++++..  ++.|.+.|+.+++.+..+...+.. . ....-..+   
T Consensus       160 ---~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~  236 (426)
T 3c75_H          160 ---LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNC  236 (426)
T ss_dssp             ---CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred             ---cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEc
Confidence               444444311       123457899999999999874  578999999999887776531100 0 00000112   


Q ss_pred             ----------------------------------EECCCCCEEEEEeCCCcEEEEEcCCCcee--eeeeC----------
Q 010669          364 ----------------------------------AFHPDGLILGTGTSEALVKIWDVKSQANV--AKFDG----------  397 (504)
Q Consensus       364 ----------------------------------~~~pdg~~l~~g~~dg~I~iwd~~~~~~~--~~~~~----------  397 (504)
                                                        .|.+++..++.....|.|.+.|+......  ..+..          
T Consensus       237 ~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~  316 (426)
T 3c75_H          237 RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDW  316 (426)
T ss_dssp             TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE
T ss_pred             CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccc
Confidence                                              33444444444445566667776543211  11110          


Q ss_pred             CCCCeEEEEEcCCCcEEEEEeC----------Cc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC-EEEEEeC-c-
Q 010669          398 HVGAVTAISFSENGYYLATAAH----------DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA-D-  463 (504)
Q Consensus       398 ~~~~i~~l~~s~~g~~l~s~~~----------d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~~~-d-  463 (504)
                      .......++|++++..+++...          .+ |.++|+.+.+.+.++...   .....+.|+|+|+ ++++... + 
T Consensus       317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~  393 (426)
T 3c75_H          317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQ  393 (426)
T ss_dssp             EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTT
T ss_pred             ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCC
Confidence            0111223689999887776642          23 999999999999999764   3589999999999 8888874 3 


Q ss_pred             -EEEEEeeccCccceeEEEc
Q 010669          464 -IRVYQVASVKADWNCIKTF  482 (504)
Q Consensus       464 -i~vw~~~~~~~~~~~i~~~  482 (504)
                       |.|+|.    .+++.++++
T Consensus       394 ~VsVID~----~t~kvv~tI  409 (426)
T 3c75_H          394 TLHIYDA----ATGEELRSV  409 (426)
T ss_dssp             EEEEEET----TTCCEEEEE
T ss_pred             eEEEEEC----CCCCEEEEe
Confidence             999998    789999887

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.46  E-value=1.9e-10  Score=112.44  Aligned_cols=247  Identities=10%  Similarity=-0.029  Sum_probs=165.0

Q ss_pred             ccCCCEEEEEeC--CC---cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe----------CCCcEEEEeCCC
Q 010669          232 HYSKDVIATGGV--DT---NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSE  296 (504)
Q Consensus       232 s~~~~~l~sg~~--dg---~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s----------~dg~i~iwd~~~  296 (504)
                      .|+++++++...  .+   .|.+||..+++.+..+.....+  .++++|||++++++.          .++.|.+||..+
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            356665555542  22   7899999999998888754444  999999999988876          367899999976


Q ss_pred             CCCcceeEEeccC-------CcCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCeEEEE-eecCCCCCCCCCeEEEEEC
Q 010669          297 DGNYDCKHTLKDH-------TAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQ-VSDAGTDGRPEGYTSAAFH  366 (504)
Q Consensus       297 ~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~  366 (504)
                      .   +.+..+...       ......+.|+|+|++++++..  ++.|.++| .+++.+.. +...         .|+.+.
T Consensus       107 ~---~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~---------~~~~~~  173 (373)
T 2mad_H          107 F---LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP---------TCYHIH  173 (373)
T ss_pred             C---cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC---------ceEEEE
Confidence            4   344433211       123458999999999998874  57899999 99988776 5311         134555


Q ss_pred             CCC-CEEEEEeCCCcEEEEEcCCCceeeeee-----CCCCC-eEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc--ceeee
Q 010669          367 PDG-LILGTGTSEALVKIWDVKSQANVAKFD-----GHVGA-VTAISFSENGYYLATAAHDG-VKLWDLRKLK--NFRSF  436 (504)
Q Consensus       367 pdg-~~l~~g~~dg~I~iwd~~~~~~~~~~~-----~~~~~-i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~--~~~~~  436 (504)
                      |++ ..+++.+.||.+.++|. +++.+....     ....+ .....|.+++..++..+..+ +.+.|+....  .+..+
T Consensus       174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~  252 (373)
T 2mad_H          174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI  252 (373)
T ss_pred             eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeee
Confidence            654 45667778999999999 777663322     11122 22345666654444334555 9999987543  22233


Q ss_pred             ecCC--------CCCCeeEEEECCCCCEEEEEeC------------cEEEEEeeccCccceeEEEccCCCCCCceeEEEE
Q 010669          437 ESSD--------SETPTNSVDFDHSGSYLAVASA------------DIRVYQVASVKADWNCIKTFPDLSGTGAASFLFL  496 (504)
Q Consensus       437 ~~~~--------~~~~v~~i~~~~~g~~l~~~~~------------di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~  496 (504)
                      ....        .......+.++|+++.++++..            +|.++|.    .+++.+.++..   .....++.|
T Consensus       253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~----~t~~vv~~i~~---g~~p~~i~~  325 (373)
T 2mad_H          253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG----LVGQTSSQISL---GHDVDAISV  325 (373)
T ss_pred             eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC----CCCEEEEEEEC---CCCcCeEEE
Confidence            2110        0122445789999998887642            2777787    77888888865   446899999


Q ss_pred             eecCc
Q 010669          497 FVLGQ  501 (504)
Q Consensus       497 ~~~g~  501 (504)
                      +++|+
T Consensus       326 s~Dg~  330 (373)
T 2mad_H          326 AQDGG  330 (373)
T ss_pred             CCCCC
Confidence            99997

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.46  E-value=8.3e-12  Score=120.92  Aligned_cols=251  Identities=8%  Similarity=0.010  Sum_probs=171.4

Q ss_pred             EeccCCCEEEEEeC-----CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe----------CCCcEEEEeC
Q 010669          230 DIHYSKDVIATGGV-----DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQG  294 (504)
Q Consensus       230 ~~s~~~~~l~sg~~-----dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s----------~dg~i~iwd~  294 (504)
                      ...|+++.+++...     ++.|.++|..+++.+.++.....+  .++++|||+++++++          .++.|.+||.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            34578887777654     679999999999999988755555  499999999887775          3678999999


Q ss_pred             CCCCCcceeEEeccC-------CcCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEE
Q 010669          295 SEDGNYDCKHTLKDH-------TAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF  365 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  365 (504)
                      .+.   +.+..+...       ...-..+.|+|+|++++++..  ++.|.++|+.+++.+..+...   +    . ...+
T Consensus       117 ~t~---~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---g----~-~~~~  185 (386)
T 3sjl_D          117 VTL---LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---D----C-YHIF  185 (386)
T ss_dssp             TTC---CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---S----E-EEEE
T ss_pred             CCC---eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---C----c-ceee
Confidence            886   445544321       123567899999999888864  689999999999998888521   1    1 1223


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeC----CCCCeE-EEEEc-CCCcEEEEEeCCc-EEEEEcCCCc--ceee
Q 010669          366 HPDGLILGTGTSEALVKIWDVKS-QANVAKFDG----HVGAVT-AISFS-ENGYYLATAAHDG-VKLWDLRKLK--NFRS  435 (504)
Q Consensus       366 ~pdg~~l~~g~~dg~I~iwd~~~-~~~~~~~~~----~~~~i~-~l~~s-~~g~~l~s~~~d~-v~vwd~~~~~--~~~~  435 (504)
                      ....+.+++.+.||.+.+.++.. ++.......    ...++. ...|. ++|++++.. .++ |+++|+.+..  ....
T Consensus       186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs-~~g~V~v~d~~~~~~~v~~~  264 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT-YTGKIHQIDLSSGDAKFLPA  264 (386)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB-TTSEEEEEECTTSSCEECCC
T ss_pred             cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEe-CCCEEEEEECCCCcceeecc
Confidence            22445677778888888888876 554321111    112222 24664 678666644 456 9999997654  3333


Q ss_pred             eecCC--------CCCCeeEEEECCCCCEEEEEeC-----------c-EEEEEeeccCccceeEEEccCCCCCCceeEEE
Q 010669          436 FESSD--------SETPTNSVDFDHSGSYLAVASA-----------D-IRVYQVASVKADWNCIKTFPDLSGTGAASFLF  495 (504)
Q Consensus       436 ~~~~~--------~~~~v~~i~~~~~g~~l~~~~~-----------d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~  495 (504)
                      +....        .......++++++++.+++...           + |.++|.    ++++.+..+..   ...+.+|.
T Consensus       265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~----~t~kv~~~i~v---g~~~~~la  337 (386)
T 3sjl_D          265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA----KTGERLAKFEM---GHEIDSIN  337 (386)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET----TTCCEEEEEEE---EEEECEEE
T ss_pred             eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC----CCCeEEEEEEC---CCCcceEE
Confidence            33100        0123445788999998888642           1 666666    78888888875   45788999


Q ss_pred             EeecCc
Q 010669          496 LFVLGQ  501 (504)
Q Consensus       496 ~~~~g~  501 (504)
                      |+++|+
T Consensus       338 vs~D~~  343 (386)
T 3sjl_D          338 VSQDEK  343 (386)
T ss_dssp             ECSSSS
T ss_pred             ECCCCC
Confidence            999986

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.45  E-value=1.2e-11  Score=132.69  Aligned_cols=254  Identities=15%  Similarity=0.046  Sum_probs=159.0

Q ss_pred             cCCCEEEEEeCCCc---EEEE--cCC---CCceEEEc------ccCccceeEEEEeeCCCEEEEEeCC-----CcEEEEe
Q 010669          233 YSKDVIATGGVDTN---AVLF--DRP---SGQIVTTL------SGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQ  293 (504)
Q Consensus       233 ~~~~~l~sg~~dg~---i~vw--d~~---~~~~~~~~------~~h~~~v~~l~~s~~~~~l~s~s~d-----g~i~iwd  293 (504)
                      |+|++++....++.   -.+|  +..   .++....+      .+|...+..++|||||++|+.++.+     .+|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            78887766554332   3444  433   33322221      2333468899999999998876543     4699999


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCe--------------EEEEECCCCeE--EEEeecCCCCCCC
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT--------------WCFYDLSSGIC--LTQVSDAGTDGRP  357 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~--------------i~iwd~~~~~~--~~~~~~~~~~~~~  357 (504)
                      +.++.   .... ..+...+..++|+|| +.|+.++.++.              |++|++.++..  ...+.   ...+.
T Consensus       196 l~tg~---~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~---~~~~~  267 (741)
T 1yr2_A          196 VADGK---PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA---TPELP  267 (741)
T ss_dssp             TTTCC---EEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC---CTTCT
T ss_pred             CCCCC---CCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec---cCCCC
Confidence            98863   2221 112222357899999 98888887654              89999987652  22222   11233


Q ss_pred             CCeEEEEECCCCCEEEEEeCCC-----cEEEEEcCCC--ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC----c-EEEE
Q 010669          358 EGYTSAAFHPDGLILGTGTSEA-----LVKIWDVKSQ--ANVAKFDGHVGAVTAISFSENGYYLATAAHD----G-VKLW  425 (504)
Q Consensus       358 ~~v~~~~~~pdg~~l~~g~~dg-----~I~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d----~-v~vw  425 (504)
                      ..+..+.|+|||++|+..+.++     .|++||+.++  +....+..+...+.... +|+|..|+..+.+    . |.+|
T Consensus       268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~  346 (741)
T 1yr2_A          268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRV  346 (741)
T ss_dssp             TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEE
T ss_pred             eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEE
Confidence            4588999999999888877544     8999999876  31455555555555553 4788877776642    3 9999


Q ss_pred             EcCCCc-ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          426 DLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       426 d~~~~~-~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      |+.++. ....+..+ ....+..+.|+ ++.++++...+  .+||.++.   .+..+..+..+ +.+.+..+.++++|+
T Consensus       347 d~~~~~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~---~g~~~~~l~~~-~~~~v~~~~~s~d~~  419 (741)
T 1yr2_A          347 DLSGSTPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL---DGKPAGAVSLP-GIGSASGLSGRPGDR  419 (741)
T ss_dssp             ECSSSSCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET---TSCEEEECBCS-SSCEEEEEECCBTCS
T ss_pred             eCCCCccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC---CCCceeeccCC-CCeEEEEeecCCCCC
Confidence            998752 33333322 23456677887 55566666666  67777642   24455555432 256788888888775

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.43  E-value=3.1e-12  Score=124.44  Aligned_cols=175  Identities=16%  Similarity=0.082  Sum_probs=131.0

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC--------CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEE
Q 010669          267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD  338 (504)
Q Consensus       267 ~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd  338 (504)
                      .++.+++++...++++|+.++ +.+|+.....        ........ .+.. |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            689999999999999999985 5669854321        01222222 3556 999999  89999998 889999999


Q ss_pred             CCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669          339 LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA  418 (504)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~  418 (504)
                      +.+........     .+...+.++.+.+..  +++++.||.|.+||++++....    +...|+|++|||+|  ++.|.
T Consensus       113 v~sl~~~~~~~-----~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          113 LEELSEFRTVT-----SFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             SSSTTCEEEEE-----ECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE
T ss_pred             chhhhccCccc-----eeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE
Confidence            98766444443     233457777776643  8888999999999999877643    34589999999999  66788


Q ss_pred             CCc-EEEEEcCCCcc--eeeeec----C---CCCCCeeEEEECCCCCEEEEE
Q 010669          419 HDG-VKLWDLRKLKN--FRSFES----S---DSETPTNSVDFDHSGSYLAVA  460 (504)
Q Consensus       419 ~d~-v~vwd~~~~~~--~~~~~~----~---~~~~~v~~i~~~~~g~~l~~~  460 (504)
                      .|+ +++|+......  ...+..    .   .+...|.++.|.+++.++++-
T Consensus       180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            888 99998877664  445521    1   135789999999999999874

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.41  E-value=4.6e-10  Score=106.30  Aligned_cols=225  Identities=12%  Similarity=0.129  Sum_probs=146.9

Q ss_pred             CccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 010669          264 HSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG  342 (504)
Q Consensus       264 h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~  342 (504)
                      +..-.-+..|+++ +.++++...++.|..||..++.    ...+ .....+.+++++++|+++++ . ++.|.+||..++
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~----~~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g   83 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ----VQRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ   83 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----EEEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc----EEEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence            3344567899985 4566677778999999988642    2222 23467999999999995554 3 568999999988


Q ss_pred             eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC---------CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcE
Q 010669          343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE---------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYY  413 (504)
Q Consensus       343 ~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d---------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~  413 (504)
                      +........ .......+..++++|+|+++++....         ..-.||.+.....+..+..+....+.++|+|+|+.
T Consensus        84 ~~~~~~~~~-~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~  162 (297)
T 3g4e_A           84 SAVVLATVD-NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI  162 (297)
T ss_dssp             EEEEEEECC-TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred             cEEEEEecC-CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence            754433211 11123457899999999977654321         22344544322222223333446789999999987


Q ss_pred             EEEEeC-Cc-EEEEEc--CCCcce--eeee-cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccC
Q 010669          414 LATAAH-DG-VKLWDL--RKLKNF--RSFE-SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       414 l~s~~~-d~-v~vwd~--~~~~~~--~~~~-~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      |+.+.. ++ |.+||+  .++...  ..+. .......+..++++++|++.++....  |.+|+.    .+++.+..+..
T Consensus       163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~----~tG~~~~~i~~  238 (297)
T 3g4e_A          163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP----VTGKRLQTVKL  238 (297)
T ss_dssp             EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT----TTCCEEEEEEC
T ss_pred             EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC----CCceEEEEEEC
Confidence            766554 44 999987  344321  1121 11113467899999999877776655  777775    45778888876


Q ss_pred             CCCCCceeEEEEe-ecCcc
Q 010669          485 LSGTGAASFLFLF-VLGQT  502 (504)
Q Consensus       485 h~~~~~v~~l~~~-~~g~~  502 (504)
                      +  ...+++++|. ++++.
T Consensus       239 p--~~~~t~~~f~g~d~~~  255 (297)
T 3g4e_A          239 P--VDKTTSCCFGGKNYSE  255 (297)
T ss_dssp             S--SSBEEEEEEESGGGCE
T ss_pred             C--CCCceEEEEeCCCCCE
Confidence            5  5689999998 77653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.41  E-value=3e-11  Score=128.47  Aligned_cols=229  Identities=15%  Similarity=0.101  Sum_probs=148.6

Q ss_pred             CCCCCeEEEEeccCCCEEEEE-----eCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCc-------
Q 010669          221 TSKPGIVSLDIHYSKDVIATG-----GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT-------  288 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg-----~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~-------  288 (504)
                      +|...+..++|||||++|+.+     +....|++||+.+++.+... .+......++|+ |++.|+.++.+..       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            355578899999999988843     33357999999999865431 111123678999 9999888887743       


Q ss_pred             ------EEEEeCCCCCCc-ceeEEecc-CCcCeEEEEEccCCCEEEEEeC----CCeEEEEECCCCe-EEEEeecCCCCC
Q 010669          289 ------VRVWQGSEDGNY-DCKHTLKD-HTAEVQAVTVHATNKYFVTASL----DNTWCFYDLSSGI-CLTQVSDAGTDG  355 (504)
Q Consensus       289 ------i~iwd~~~~~~~-~~~~~~~~-h~~~v~~l~~~p~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~~~~~~~~  355 (504)
                            |++|++.+.... ..+..... |...+..+.|+|+|++|+....    +..|.++|+.++. ....+..     
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-----  278 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-----  278 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-----
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-----
Confidence                  999998765311 22333333 4456788999999998765443    3589999998763 2333331     


Q ss_pred             CCCCeEEEEECCCCCEEE-EEeCC---CcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCCcEEEEEeC-Cc---EEEE
Q 010669          356 RPEGYTSAAFHPDGLILG-TGTSE---ALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAH-DG---VKLW  425 (504)
Q Consensus       356 ~~~~v~~~~~~pdg~~l~-~g~~d---g~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s~~~-d~---v~vw  425 (504)
                      +....... ++++|..|+ ....+   +.|..+|+.++..  ...+..|...+.  .|++++.+|+.... ++   |++|
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~  355 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQF  355 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence            22233333 566555544 44333   6799999987654  345655665554  88888887776654 43   8999


Q ss_pred             EcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEe
Q 010669          426 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS  461 (504)
Q Consensus       426 d~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~  461 (504)
                      |+..+ ....+.... ...+..+.+++++..++...
T Consensus       356 d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~  389 (693)
T 3iuj_A          356 DYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGF  389 (693)
T ss_dssp             CTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEE
T ss_pred             ECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEe
Confidence            98743 444454332 34577778888887665543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.39  E-value=1.2e-10  Score=110.83  Aligned_cols=222  Identities=14%  Similarity=0.129  Sum_probs=147.1

Q ss_pred             ccceeEEEEeeCCCEEEE-------EeCCCcEEEEeCCCCCCcceeEEec-----cCCcCeEEEEEccC-CCEEEEEeCC
Q 010669          265 SKKVTSVKFVTEGDLFLT-------GSADKTVRVWQGSEDGNYDCKHTLK-----DHTAEVQAVTVHAT-NKYFVTASLD  331 (504)
Q Consensus       265 ~~~v~~l~~s~~~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~-~~~l~s~s~d  331 (504)
                      -....+++|++++.++++       +..++.|.+||..++.   . ..+.     ++...+.++.++++ ++++++ +..
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~---~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~   91 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---K-TVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMR   91 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---E-EEEECCEETTEECCEEEEEECSSSSEEEEE-ETT
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc---E-EEEEecccCCCCCCCceEEEecCCCcEEEE-ECC
Confidence            345688999999987777       5778899999976642   2 1222     24567899999998 665544 445


Q ss_pred             CeEEEEECCCCeEEEE-eecCCCCCCCCCeEEEEECCCCCEEEEEeCC---------------CcEEEEEcCCCceeeee
Q 010669          332 NTWCFYDLSSGICLTQ-VSDAGTDGRPEGYTSAAFHPDGLILGTGTSE---------------ALVKIWDVKSQANVAKF  395 (504)
Q Consensus       332 g~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d---------------g~I~iwd~~~~~~~~~~  395 (504)
                      +.|.+||.. ++.... .... .......+.+++++++|+++++...+               +.|..||.. ++... +
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~  167 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDS-EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-V  167 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCT-TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-E
T ss_pred             CCEEEEeCC-CCEEEEEeccC-CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-e
Confidence            579999998 665433 2111 11122458899999999988877655               567777765 54333 2


Q ss_pred             eCCCCCeEEEEEc----CCCcEEEEEe-CCc-EEEEEcC-CCcce--eeee-cCCCC-CCeeEEEECCCCCEEEEEeCc-
Q 010669          396 DGHVGAVTAISFS----ENGYYLATAA-HDG-VKLWDLR-KLKNF--RSFE-SSDSE-TPTNSVDFDHSGSYLAVASAD-  463 (504)
Q Consensus       396 ~~~~~~i~~l~~s----~~g~~l~s~~-~d~-v~vwd~~-~~~~~--~~~~-~~~~~-~~v~~i~~~~~g~~l~~~~~d-  463 (504)
                      ..+......++|+    ++|..|+.+. .++ |.+||+. .++..  ..+. ..... ..+..++++++|+++++...+ 
T Consensus       168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence            2334467899999    9997665554 445 9999986 33311  1111 11112 457889999999988876544 


Q ss_pred             -EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          464 -IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       464 -i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                       |.+|+.    .+++.+..+..+  ...+.++.|.++|.
T Consensus       248 ~i~~~d~----~~g~~~~~~~~~--~~~~~~i~~~~dg~  280 (314)
T 1pjx_A          248 HIEVFGP----DGGQPKMRIRCP--FEKPSNLHFKPQTK  280 (314)
T ss_dssp             EEEEECT----TCBSCSEEEECS--SSCEEEEEECTTSS
T ss_pred             EEEEEcC----CCCcEeEEEeCC--CCCceeEEECCCCC
Confidence             888875    335555555554  46789999988886

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.35  E-value=1.7e-10  Score=111.76  Aligned_cols=235  Identities=8%  Similarity=0.044  Sum_probs=151.4

Q ss_pred             CCeEEEEeccCCCEEEEEe--CCCcEEEEcCCCCceEEEc-------ccCccceeEEEEeeCCCEEEEEeC-----CCcE
Q 010669          224 PGIVSLDIHYSKDVIATGG--VDTNAVLFDRPSGQIVTTL-------SGHSKKVTSVKFVTEGDLFLTGSA-----DKTV  289 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~-------~~h~~~v~~l~~s~~~~~l~s~s~-----dg~i  289 (504)
                      .....++++++|+++++..  .++.+.||.+.+++. ..+       ..|...+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5688999999999988864  234244454435543 322       134567999999999886665433     5789


Q ss_pred             EEEeCCCCCCcceeEEecc------CCcCeEEEEEccCCCEE-EEEe---CCCeEEEEECCCCeEEEEeecC-CCC----
Q 010669          290 RVWQGSEDGNYDCKHTLKD------HTAEVQAVTVHATNKYF-VTAS---LDNTWCFYDLSSGICLTQVSDA-GTD----  354 (504)
Q Consensus       290 ~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~~p~~~~l-~s~s---~dg~i~iwd~~~~~~~~~~~~~-~~~----  354 (504)
                      .+||+.++   +.+..+..      +...+..+++++++..+ ++..   .++.|.+||+.+++....+... ...    
T Consensus        96 ~~~d~~tg---~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           96 VAWDTLNN---QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             EEEETTTT---EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             EEEECCCC---eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            99999875   33333322      22456899999865544 4444   5789999999988766544210 000    


Q ss_pred             -----C--------------CCCCeEEEEECCCCCEEEEEeCCC-cEEEEEcC---CCc-----eee--eeeCCCCCeEE
Q 010669          355 -----G--------------RPEGYTSAAFHPDGLILGTGTSEA-LVKIWDVK---SQA-----NVA--KFDGHVGAVTA  404 (504)
Q Consensus       355 -----~--------------~~~~v~~~~~~pdg~~l~~g~~dg-~I~iwd~~---~~~-----~~~--~~~~~~~~i~~  404 (504)
                           +              ....+..++|+|||+.|+++..++ .|..++..   .+.     ...  ...++.+....
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg  252 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG  252 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence                 0              012468899999999888877665 55555532   111     011  11234456678


Q ss_pred             EEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          405 ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       405 l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      ++++++|.++++...++ |.+||..+++....... .....+.+++|+++|.++++.+..
T Consensus       253 ia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          253 ISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEECTTSCEEEEECCG
T ss_pred             EEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEECCCCcEEEEeCcc
Confidence            99999999888887777 99999855553222221 123468899999998877776543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.35  E-value=2.5e-10  Score=108.59  Aligned_cols=223  Identities=16%  Similarity=0.100  Sum_probs=148.7

Q ss_pred             EcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEE
Q 010669          260 TLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD  338 (504)
Q Consensus       260 ~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd  338 (504)
                      .+...........|+++++ ++++...++.|..|+...    . ...+..+...+.++.++++|+++++...++.|.+||
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence            3333445577899999998 667777889999998732    2 234445567789999999999776666668999999


Q ss_pred             CCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE----EeC-------------CCcEEEEEcCCCceeeeeeCCCCC
Q 010669          339 LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT----GTS-------------EALVKIWDVKSQANVAKFDGHVGA  401 (504)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~----g~~-------------dg~I~iwd~~~~~~~~~~~~~~~~  401 (504)
                      .. +......... .......+..++++++|+++++    |..             .+.|..||..+++.....  ....
T Consensus       114 ~~-g~~~~~~~~~-~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~  189 (305)
T 3dr2_A          114 AD-GQAHLLVGRY-AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH  189 (305)
T ss_dssp             TT-SCEEEEECEE-TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred             CC-CCEEEEEecc-CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence            86 5433222110 1011234678999999998886    432             256888887666544333  3456


Q ss_pred             eEEEEEcCCCcEEEEEeCC------c-EEEEEcCCCcc--eeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeec
Q 010669          402 VTAISFSENGYYLATAAHD------G-VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVAS  471 (504)
Q Consensus       402 i~~l~~s~~g~~l~s~~~d------~-v~vwd~~~~~~--~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~  471 (504)
                      .+.++|+|+|..|+.+...      + |.+||+.....  ...+... .......++++++|++.++. .+ |.+|+.  
T Consensus       190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~--  265 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSSS-GTGVCVFDS--  265 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEECC-SSEEEEECT--
T ss_pred             CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEec-CCcEEEECC--
Confidence            7889999999977777554      4 99999875431  1111111 13345679999999955544 55 777773  


Q ss_pred             cCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          472 VKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       472 ~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                         .++.+..+..+  . .+.+++|.++++
T Consensus       266 ---~g~~~~~~~~~--~-~~~~~~f~~d~~  289 (305)
T 3dr2_A          266 ---DGQLLGHIPTP--G-TASNCTFDQAQQ  289 (305)
T ss_dssp             ---TSCEEEEEECS--S-CCCEEEECTTSC
T ss_pred             ---CCCEEEEEECC--C-ceeEEEEeCCCC
Confidence               46677777654  3 588888887775

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.30  E-value=2.5e-09  Score=102.66  Aligned_cols=216  Identities=11%  Similarity=0.048  Sum_probs=140.9

Q ss_pred             eeEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEE
Q 010669          268 VTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT  346 (504)
Q Consensus       268 v~~l~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~  346 (504)
                      ..+..|+|++ .++++...++.|..||..++   . ...+. ....+.++.|+++|+++++. . ..|.+||..+++...
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---~-~~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASG---R-KTVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL  123 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTT---E-EEEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCC---c-EEEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence            4567899864 45666667889999998764   2 22222 34679999999999877754 3 459999998887543


Q ss_pred             EeecCCCCCCCCCeEEEEECCCCCEEEEEeC------CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeC-
Q 010669          347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTS------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-  419 (504)
Q Consensus       347 ~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~-  419 (504)
                      ..... .......+..++++|+|+++++...      .+.|..+|  +++. ..+..+......++|+|+|+.|+.+.. 
T Consensus       124 ~~~~~-~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          124 HAELE-SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             EECSS-TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             EeeCC-CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECC
Confidence            32211 1111246889999999997765432      24566666  4443 233333346789999999987766654 


Q ss_pred             Cc-EEEEEcC--CC-cce--eeee-cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCc
Q 010669          420 DG-VKLWDLR--KL-KNF--RSFE-SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGA  490 (504)
Q Consensus       420 d~-v~vwd~~--~~-~~~--~~~~-~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~  490 (504)
                      ++ |.+||+.  ++ ...  ..+. .......+..++++++|.+.++...+  |.+|+.     .++.+..+..+  ...
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-----~g~~~~~i~~~--~~~  272 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-----DGNHIARYEVP--GKQ  272 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-----TCCEEEEEECS--CSB
T ss_pred             CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-----CCCEEEEEECC--CCC
Confidence            45 9999986  44 321  1221 11113456789999999877766443  777764     35566666654  557


Q ss_pred             eeEEEEe-ecCc
Q 010669          491 ASFLFLF-VLGQ  501 (504)
Q Consensus       491 v~~l~~~-~~g~  501 (504)
                      +++++|. +++.
T Consensus       273 ~~~~af~g~d~~  284 (326)
T 2ghs_A          273 TTCPAFIGPDAS  284 (326)
T ss_dssp             EEEEEEESTTSC
T ss_pred             cEEEEEecCCCC
Confidence            8999998 7764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.29  E-value=1.5e-10  Score=112.19  Aligned_cols=232  Identities=10%  Similarity=-0.006  Sum_probs=151.4

Q ss_pred             cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe----------CCCcEEEEeCCCCCCcceeEEeccC------
Q 010669          246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSEDGNYDCKHTLKDH------  309 (504)
Q Consensus       246 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~h------  309 (504)
                      .|.++|..+++.+.++.....+  .+.++||+++++++.          .++.|.+||..+.   +.+.++...      
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~---~vv~~I~v~~~~~~~  121 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIELPDAPRFS  121 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC---CEEEEEEETTSCSCC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC---CEEEEEECCCccccc
Confidence            8889999999999998755555  799999999888886          3689999999886   556665432      


Q ss_pred             -CcCeEEEEEccCCCEEEEEeC--CCeEEE--EECCCCeEEEEeecCCC-------------CCCCCCeEEEEE------
Q 010669          310 -TAEVQAVTVHATNKYFVTASL--DNTWCF--YDLSSGICLTQVSDAGT-------------DGRPEGYTSAAF------  365 (504)
Q Consensus       310 -~~~v~~l~~~p~~~~l~s~s~--dg~i~i--wd~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~------  365 (504)
                       ......+.++|+|++++++..  +..+.+  +|..+   +..+...+.             ......+..+..      
T Consensus       122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~  198 (368)
T 1mda_H          122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAA  198 (368)
T ss_dssp             BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred             cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence             123568899999999998875  457888  88866   222211000             000000000110      


Q ss_pred             --------------------CCCCCEEEEEeCCCcEEEEEcCCCc--eeeeeeC-------C---CCCeEEEEEcCCCcE
Q 010669          366 --------------------HPDGLILGTGTSEALVKIWDVKSQA--NVAKFDG-------H---VGAVTAISFSENGYY  413 (504)
Q Consensus       366 --------------------~pdg~~l~~g~~dg~I~iwd~~~~~--~~~~~~~-------~---~~~i~~l~~s~~g~~  413 (504)
                                          .+++..++..+. +.|.+.|+....  .+..+.-       +   ......+.|+|+|..
T Consensus       199 ~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~  277 (368)
T 1mda_H          199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG  277 (368)
T ss_dssp             CEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred             CCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence                                333333333334 777777875432  2222210       0   011222689999988


Q ss_pred             EEEEeC----------CcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE-EEEEe--Cc-EEEEEeeccCccceeE
Q 010669          414 LATAAH----------DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY-LAVAS--AD-IRVYQVASVKADWNCI  479 (504)
Q Consensus       414 l~s~~~----------d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~-l~~~~--~d-i~vw~~~~~~~~~~~i  479 (504)
                      ++.+..          +++.++|+.+.+.+..+...   .....++|+|||++ +++..  .+ |.|+|+    .+++.+
T Consensus       278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~----~t~kvv  350 (368)
T 1mda_H          278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDA----ASDQDQ  350 (368)
T ss_dssp             EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEES----SSCEEE
T ss_pred             EEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEEC----CCCcEE
Confidence            876532          24779999999998888764   36899999999984 44444  23 999998    889999


Q ss_pred             EEccCCCCCCceeEEEE
Q 010669          480 KTFPDLSGTGAASFLFL  496 (504)
Q Consensus       480 ~~~~~h~~~~~v~~l~~  496 (504)
                      .++...   .....+.+
T Consensus       351 ~~I~vg---~~P~~i~~  364 (368)
T 1mda_H          351 SSVELD---KGPESLSV  364 (368)
T ss_dssp             EECCCC---SCCCEEEC
T ss_pred             EEEECC---CCCCEEEe
Confidence            999864   33344444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.29  E-value=2e-09  Score=106.73  Aligned_cols=224  Identities=13%  Similarity=0.075  Sum_probs=142.4

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC--eEEEEECCCCe
Q 010669          266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN--TWCFYDLSSGI  343 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg--~i~iwd~~~~~  343 (504)
                      .....++|+++++++++...++.|++||..++   ........ ..... ++|+++++.+++++.++  .|.+||...+.
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTT---EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCC---EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            35789999999998777777899999999764   23222222 22233 99999999999988866  79999987665


Q ss_pred             EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee----eeCCCCCe--EEEEEcCC-CcEEEE
Q 010669          344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK----FDGHVGAV--TAISFSEN-GYYLAT  416 (504)
Q Consensus       344 ~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~----~~~~~~~i--~~l~~s~~-g~~l~s  416 (504)
                      ....+... .......+.+++++|++..|+++..++.|+.||..++.....    ..++...-  ..++|+|+ +.++++
T Consensus       206 ~~~~~g~~-~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          206 APTRIGQL-GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             CEEEEEEC-CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred             eeEEeeec-cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence            43333110 001235678899999544455577789999999987653322    22222222  39999995 555555


Q ss_pred             EeCCc-EEEEEcCCCcceeeeecCC-------------CCCCeeEEEECCCCCEEEEEe-Cc--EEEEEeeccCccceeE
Q 010669          417 AAHDG-VKLWDLRKLKNFRSFESSD-------------SETPTNSVDFDHSGSYLAVAS-AD--IRVYQVASVKADWNCI  479 (504)
Q Consensus       417 ~~~d~-v~vwd~~~~~~~~~~~~~~-------------~~~~v~~i~~~~~g~~l~~~~-~d--i~vw~~~~~~~~~~~i  479 (504)
                      -..++ |+.||....  +..+....             .-.....++|+++|+++++-. .+  |+.|++    ..+. +
T Consensus       285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~----~~G~-v  357 (409)
T 3hrp_A          285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI----LDGY-V  357 (409)
T ss_dssp             ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET----TTTE-E
T ss_pred             eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC----CCCE-E
Confidence            44455 999987643  22222211             013478999999999666655 44  777775    2333 3


Q ss_pred             EEccCCCC-------------CCceeEEEEeecCcc
Q 010669          480 KTFPDLSG-------------TGAASFLFLFVLGQT  502 (504)
Q Consensus       480 ~~~~~h~~-------------~~~v~~l~~~~~g~~  502 (504)
                      .++-++..             -....++++.++|.+
T Consensus       358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~l  393 (409)
T 3hrp_A          358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGY  393 (409)
T ss_dssp             EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEE
T ss_pred             EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCE
Confidence            33333200             135778888888764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.28  E-value=2.6e-09  Score=104.17  Aligned_cols=222  Identities=10%  Similarity=0.117  Sum_probs=150.8

Q ss_pred             cCCCEEEE-EeCCCcEEEEcCCCC----ceEEEcc-------cCccceeEEEEeeCCCEEEEEeCC------CcEEEEeC
Q 010669          233 YSKDVIAT-GGVDTNAVLFDRPSG----QIVTTLS-------GHSKKVTSVKFVTEGDLFLTGSAD------KTVRVWQG  294 (504)
Q Consensus       233 ~~~~~l~s-g~~dg~i~vwd~~~~----~~~~~~~-------~h~~~v~~l~~s~~~~~l~s~s~d------g~i~iwd~  294 (504)
                      .++++|++ |..++.|+|+|+.+.    +...++.       .....-..+...|+| +++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77776654 567889999998755    5666663       111245667788999 77776655      78999998


Q ss_pred             CCCCCcceeEEeccC--C-cCeEEEEEccCCCEEEEEe-------------------CCCeEEEEECCCCeEEEEeecCC
Q 010669          295 SEDGNYDCKHTLKDH--T-AEVQAVTVHATNKYFVTAS-------------------LDNTWCFYDLSSGICLTQVSDAG  352 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h--~-~~v~~l~~~p~~~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~~~~  352 (504)
                      .+.   +.+.++...  . ..-..+.|+|+++.+++..                   .+.+|.+||+.+++.+..+... 
T Consensus       172 ~T~---~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg-  247 (462)
T 2ece_A          172 YSF---EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG-  247 (462)
T ss_dssp             TTC---CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC-
T ss_pred             CCC---eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC-
Confidence            875   556665422  1 2234688899999888885                   3689999999999887777531 


Q ss_pred             CCCCCCCeEEEEE--CCCCCEEEEEeC------CCcEEEEEcCCCce--eeee--eCC----------------CCCeEE
Q 010669          353 TDGRPEGYTSAAF--HPDGLILGTGTS------EALVKIWDVKSQAN--VAKF--DGH----------------VGAVTA  404 (504)
Q Consensus       353 ~~~~~~~v~~~~~--~pdg~~l~~g~~------dg~I~iwd~~~~~~--~~~~--~~~----------------~~~i~~  404 (504)
                        ........+.|  +|+++++++++.      ++.|.+|....++.  ...+  ...                ......
T Consensus       248 --~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          248 --EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             --TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             --CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence              11123445555  999998888774      56887766544321  1111  110                245788


Q ss_pred             EEEcCCCcEEEEEeCC-c-EEEEEcCC---CcceeeeecCCC------------CCCeeEEEECCCCCEEEEEe
Q 010669          405 ISFSENGYYLATAAHD-G-VKLWDLRK---LKNFRSFESSDS------------ETPTNSVDFDHSGSYLAVAS  461 (504)
Q Consensus       405 l~~s~~g~~l~s~~~d-~-v~vwd~~~---~~~~~~~~~~~~------------~~~v~~i~~~~~g~~l~~~~  461 (504)
                      |.+|+||++|.++..+ + |.+||+..   .+.+..+.....            ......+.++|||++|+++.
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999999999999876 3 99999863   344444443210            11368899999999999998

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.27  E-value=2.5e-12  Score=125.91  Aligned_cols=203  Identities=16%  Similarity=0.138  Sum_probs=117.5

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCc-C
Q 010669          234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA-E  312 (504)
Q Consensus       234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~-~  312 (504)
                      ++..+++++.||.|+.||..+|+.+..+..  +.+.+..+..++..+++++.||.|..||..++.   .+..+..+.. .
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~---~~w~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE---GLTKLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C---CSEECSCCHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc---eeeeeeccCccc
Confidence            578899999999999999999999888875  556666666677788888899999999997752   2222222211 1


Q ss_pred             eE-EEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce
Q 010669          313 VQ-AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN  391 (504)
Q Consensus       313 v~-~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~  391 (504)
                      +. +..+ ..+..+++++.|+.++.||..+|+....+...     .    ...++|++..+++++.|+.|+.||.++++.
T Consensus        83 ~~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-----~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           83 VQASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-----F----ADSLSPSTSLLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             HTTCSCC------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred             cccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCC-----C----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence            10 0011 13557788888999999999999887666421     1    234566888899999999999999999987


Q ss_pred             eeeeeCCCCCeEEEEEcCCC---cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCee-EEEECCCCCE
Q 010669          392 VAKFDGHVGAVTAISFSENG---YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN-SVDFDHSGSY  456 (504)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~g---~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~-~i~~~~~g~~  456 (504)
                      +..+..+.  .....++.++   ..+++++.++ |+.||.++++.+..+...   .++. ...++++|..
T Consensus       153 ~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          153 RWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA---SPVVAFYVWQREGLR  217 (369)
T ss_dssp             CCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS---SCEEEEEECTTSSCE
T ss_pred             EEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC---CceEEEEEecCCceE
Confidence            76654221  1223333332   4566677777 999999999987776643   3443 4456667653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.20  E-value=1.2e-08  Score=99.44  Aligned_cols=224  Identities=11%  Similarity=0.065  Sum_probs=148.2

Q ss_pred             eCCCEEE-EEeCCCcEEEEeCCCC-CCcceeEEec-------cCCcCeEEEEEccCCCEEEEEeCC------CeEEEEEC
Q 010669          275 TEGDLFL-TGSADKTVRVWQGSED-GNYDCKHTLK-------DHTAEVQAVTVHATNKYFVTASLD------NTWCFYDL  339 (504)
Q Consensus       275 ~~~~~l~-s~s~dg~i~iwd~~~~-~~~~~~~~~~-------~h~~~v~~l~~~p~~~~l~s~s~d------g~i~iwd~  339 (504)
                      .++++|+ .+..++.|.|+|+.+. ...+...++.       .....-..+.+.|+| .++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            6777655 5667889999998653 2234444442       111245667888999 77776555      78999999


Q ss_pred             CCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeeeCC--
Q 010669          340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-------------------SEALVKIWDVKSQANVAKFDGH--  398 (504)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-------------------~dg~I~iwd~~~~~~~~~~~~~--  398 (504)
                      .+++.+..+....  .....-..+.|+|+++.+++..                   .+..|.+||+.+++.+.++...  
T Consensus       172 ~T~~v~~~~~~~~--~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          172 YSFEPLGKWEIDR--GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             TTCCEEEECCSBC--TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             CCCeEEEEEccCC--CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            9999988886321  1112234688899999888874                   3689999999998888777642  


Q ss_pred             CCCeEEEEE--cCCCcEEEEEeC-----C-c-EEEEEcCCCc--ceeeeecCC----------------CCCCeeEEEEC
Q 010669          399 VGAVTAISF--SENGYYLATAAH-----D-G-VKLWDLRKLK--NFRSFESSD----------------SETPTNSVDFD  451 (504)
Q Consensus       399 ~~~i~~l~~--s~~g~~l~s~~~-----d-~-v~vwd~~~~~--~~~~~~~~~----------------~~~~v~~i~~~  451 (504)
                      ......+.|  +|+|+++++++.     . + |.+|....+.  ..+.+....                .......|.++
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence            124556666  999999888876     4 3 7665544332  111111110                01357789999


Q ss_pred             CCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCC------------CCCceeEEEEeecCcc
Q 010669          452 HSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLS------------GTGAASFLFLFVLGQT  502 (504)
Q Consensus       452 ~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~------------~~~~v~~l~~~~~g~~  502 (504)
                      +||++|+++...   |.+|++... .+.+.+..+....            ..+.-..+.++++|+.
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~d~-~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~  394 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDISNP-FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRR  394 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECSST-TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSE
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCC-CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCE
Confidence            999999998765   999998532 3456666654320            0113578999999874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.18  E-value=1e-11  Score=116.75  Aligned_cols=52  Identities=35%  Similarity=0.625  Sum_probs=48.4

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCC-CCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGK-CPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~   53 (504)
                      |.|+||+++|.+||++| |||+|||.+|++|+..++. ||+|+++|+..+|+|-
T Consensus       209 ~~c~i~~~~~~dPv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n  261 (281)
T 2c2l_A          209 LCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN  261 (281)
T ss_dssp             TBCTTTCSBCSSEEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred             cCCcCcCCHhcCCeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence            57999999999999997 9999999999999998775 9999999999998764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.18  E-value=3.9e-09  Score=111.44  Aligned_cols=241  Identities=15%  Similarity=0.140  Sum_probs=162.7

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEcccC-c----cceeEEEEeeCCCEEEEEeC------CCcEEEEeCCCCCCcce
Q 010669          234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGH-S----KKVTSVKFVTEGDLFLTGSA------DKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~----~~v~~l~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~  302 (504)
                      ++..|++++.|+.|+.+|..+|+.+..+..+ .    ..+.+--.. .+..++.++.      +|.|..||..++.   .
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~---~  202 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGE---R  202 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCC---E
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCc---E
Confidence            3667888899999999999999998887654 1    122211111 2344555543      7899999998863   3


Q ss_pred             eEEeccCC--------------------------------cCeEEEEEccCCCEEEEEeCCC------------------
Q 010669          303 KHTLKDHT--------------------------------AEVQAVTVHATNKYFVTASLDN------------------  332 (504)
Q Consensus       303 ~~~~~~h~--------------------------------~~v~~l~~~p~~~~l~s~s~dg------------------  332 (504)
                      +-.+....                                .....++++|++..++.++.++                  
T Consensus       203 ~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~  282 (677)
T 1kb0_A          203 KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYL  282 (677)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred             EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeee
Confidence            33322111                                1113577888889888887664                  


Q ss_pred             -eEEEEECCCCeEEEEeecCCCCC----CCCCeEEEEECCCC---CEEEEEeCCCcEEEEEcCCCceeeeeeCCC-----
Q 010669          333 -TWCFYDLSSGICLTQVSDAGTDG----RPEGYTSAAFHPDG---LILGTGTSEALVKIWDVKSQANVAKFDGHV-----  399 (504)
Q Consensus       333 -~i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~pdg---~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-----  399 (504)
                       .|..+|.++|+....+.......    .......+....+|   ..+++++.+|.|+++|..+++.+..+....     
T Consensus       283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~  362 (677)
T 1kb0_A          283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS  362 (677)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence             59999999999887776321110    01223334444577   689999999999999999999876654211     


Q ss_pred             -----C-Ce------------------------EEEEEcCCCcEEEEEeC------------------------------
Q 010669          400 -----G-AV------------------------TAISFSENGYYLATAAH------------------------------  419 (504)
Q Consensus       400 -----~-~i------------------------~~l~~s~~g~~l~s~~~------------------------------  419 (504)
                           + ++                        ..++|+|++.++++...                              
T Consensus       363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence                 0 01                        15688998877777532                              


Q ss_pred             -------------Cc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEcc
Q 010669          420 -------------DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP  483 (504)
Q Consensus       420 -------------d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~  483 (504)
                                   .+ |..||+.+++.+..+...   .++....+...+..+++++.+  +++||.    .+++.+.++.
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~----~tG~~lw~~~  515 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHA----ATGEKLWEAP  515 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEET----TTCCEEEEEE
T ss_pred             ccccccccCCCCCccEEEEEeCCCCcEEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEEC----CCCceeeeee
Confidence                         15 999999999988777653   334455566778888888877  888997    6788888876


Q ss_pred             CC
Q 010669          484 DL  485 (504)
Q Consensus       484 ~h  485 (504)
                      ..
T Consensus       516 ~~  517 (677)
T 1kb0_A          516 TG  517 (677)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.17  E-value=4.9e-09  Score=101.41  Aligned_cols=228  Identities=10%  Similarity=-0.003  Sum_probs=144.2

Q ss_pred             cceeEEEEeeCCCEEEEEe--CCCcEEEEeCCCCCCcceeEEe-------ccCCcCeEEEEEccCCCEEEEEeC-----C
Q 010669          266 KKVTSVKFVTEGDLFLTGS--ADKTVRVWQGSEDGNYDCKHTL-------KDHTAEVQAVTVHATNKYFVTASL-----D  331 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~l~s~s~-----d  331 (504)
                      ..+..++++++|+++++..  .++.++||.+.+ +  . +..+       ..|...+.+++++++++++++-..     +
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g--~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-D--G-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-T--E-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-C--C-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            5689999999999888864  234355665543 2  1 2222       234567999999999876665443     5


Q ss_pred             CeEEEEECCCCeEEEEeecCC-CCCCCCCeEEEEECCCC-CEEEEEe---CCCcEEEEEcCCCceeeeeeCCC-------
Q 010669          332 NTWCFYDLSSGICLTQVSDAG-TDGRPEGYTSAAFHPDG-LILGTGT---SEALVKIWDVKSQANVAKFDGHV-------  399 (504)
Q Consensus       332 g~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~pdg-~~l~~g~---~dg~I~iwd~~~~~~~~~~~~~~-------  399 (504)
                      +.|.+||+.+++.+..+.... ...+...+..+++++++ ..+++..   .++.|.+||+.+++....+.+|.       
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            789999999998776665321 11223456899999864 4455554   57899999998877655443321       


Q ss_pred             ----------------------CCeEEEEEcCCCcEEEEEeCCc--EEEEEcC---CCc-----ceeeeecCCCCCCeeE
Q 010669          400 ----------------------GAVTAISFSENGYYLATAAHDG--VKLWDLR---KLK-----NFRSFESSDSETPTNS  447 (504)
Q Consensus       400 ----------------------~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~---~~~-----~~~~~~~~~~~~~v~~  447 (504)
                                            ..+..|+|+|+|..|+.+...+  +..++..   .+.     ....+...........
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg  252 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG  252 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence                                  2368899999999888887665  6555532   111     0111111001235667


Q ss_pred             EEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          448 VDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       448 i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ++++++|.++++...+  |.+|+.    ..++...... ......+++++|.++|++
T Consensus       253 ia~d~~G~l~va~~~~~~V~~~d~----~~G~~~~~~~-~~~~~~p~~va~~~~g~l  304 (343)
T 2qe8_A          253 ISIDKDHNIYVGDLAHSAIGVITS----ADRAYKLLVT-DEKLSWTDSFNFGSDGYL  304 (343)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEEET----TTTEEEEEEE-CGGGSCEEEEEECTTSCE
T ss_pred             EEECCCCCEEEEccCCCeEEEEEC----CCCCEEEEEE-CCceecCCeeEECCCCcE
Confidence            9999999888877655  888885    1233222221 111346788999888764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.16  E-value=3e-09  Score=104.85  Aligned_cols=205  Identities=11%  Similarity=0.067  Sum_probs=133.1

Q ss_pred             EEEeccCCCEEEEEe----------CCCcEEEEcCCCCceEEEcccC-------ccceeEEEEeeCCCEEEEEeC--CCc
Q 010669          228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGH-------SKKVTSVKFVTEGDLFLTGSA--DKT  288 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~s~s~--dg~  288 (504)
                      .+.++|||++++++.          .++.|.++|..+++.+..+.-.       ......+.|+|||++++++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999887775          4678999999999988877521       133567899999999998874  578


Q ss_pred             EEEEeCCCCCCcceeEEeccCCc-------CeEEEEE-------------------------------------ccCCCE
Q 010669          289 VRVWQGSEDGNYDCKHTLKDHTA-------EVQAVTV-------------------------------------HATNKY  324 (504)
Q Consensus       289 i~iwd~~~~~~~~~~~~~~~h~~-------~v~~l~~-------------------------------------~p~~~~  324 (504)
                      |.+.|..+.   +.+..+.....       .-..+.+                                     .+++..
T Consensus       202 VsVID~~t~---kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~  278 (426)
T 3c75_H          202 VGVVDLEGK---TFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR  278 (426)
T ss_dssp             EEEEETTTT---EEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE
T ss_pred             EEEEECCCC---eEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE
Confidence            999999875   33333332100       0001222                                     223333


Q ss_pred             EEEEeCCCeEEEEECCCCeEEE--EeecCCCCC-----CCCCeEEEEECCCCCEEEEEeC----------CCcEEEEEcC
Q 010669          325 FVTASLDNTWCFYDLSSGICLT--QVSDAGTDG-----RPEGYTSAAFHPDGLILGTGTS----------EALVKIWDVK  387 (504)
Q Consensus       325 l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~-----~~~~v~~~~~~pdg~~l~~g~~----------dg~I~iwd~~  387 (504)
                      ++..+..+.+.+.|+..+....  .+.......     .......++++|+++.+++...          ++.|.++|+.
T Consensus       279 ~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~  358 (426)
T 3c75_H          279 LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE  358 (426)
T ss_dssp             EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence            3333334444455543332111  000000000     0111223789999887776542          3579999999


Q ss_pred             CCceeeeeeCCCCCeEEEEEcCCCc-EEEEEeC-Cc-EEEEEcCCCcceeee
Q 010669          388 SQANVAKFDGHVGAVTAISFSENGY-YLATAAH-DG-VKLWDLRKLKNFRSF  436 (504)
Q Consensus       388 ~~~~~~~~~~~~~~i~~l~~s~~g~-~l~s~~~-d~-v~vwd~~~~~~~~~~  436 (504)
                      +.+.+.++... .....+.|+|||+ ++++... ++ |.++|+.+++.+.++
T Consensus       359 T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          359 TGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            99999888632 2588999999998 8888874 55 999999999999887

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.14  E-value=9.3e-09  Score=108.78  Aligned_cols=256  Identities=14%  Similarity=0.119  Sum_probs=164.5

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccC--ccceeEEEEee---CCCEEEEEe------CCCcEEEEeCCCCCCccee
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGH--SKKVTSVKFVT---EGDLFLTGS------ADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~---~~~~l~s~s------~dg~i~iwd~~~~~~~~~~  303 (504)
                      +..+++++.|+.|+.+|..+|+.+..+...  ......+..+|   ++. ++.++      .+|.|..||..++.   .+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~---~~  196 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGK---EA  196 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCC---EE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCc---EE
Confidence            567888889999999999999988776542  11111111111   444 44443      37899999998863   33


Q ss_pred             EEecc-------------------------------CCcCeEEEEEccCCCEEEEEeCCCe-------------------
Q 010669          304 HTLKD-------------------------------HTAEVQAVTVHATNKYFVTASLDNT-------------------  333 (504)
Q Consensus       304 ~~~~~-------------------------------h~~~v~~l~~~p~~~~l~s~s~dg~-------------------  333 (504)
                      -.+..                               +......+.+.|++..++.++.++.                   
T Consensus       197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~  276 (689)
T 1yiq_A          197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS  276 (689)
T ss_dssp             EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred             EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            22211                               0011125778888899999888764                   


Q ss_pred             EEEEECCCCeEEEEeecCCCCC----CCCCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCceeeeeeCCC-------
Q 010669          334 WCFYDLSSGICLTQVSDAGTDG----RPEGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANVAKFDGHV-------  399 (504)
Q Consensus       334 i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~pdg~---~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-------  399 (504)
                      |..||.++|+.+..+.......    ............+|+   .++.++.+|.++++|.++++.+.......       
T Consensus       277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~  356 (689)
T 1yiq_A          277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGM  356 (689)
T ss_dssp             EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccccc
Confidence            9999999999888776321110    112222233333665   78899999999999999998874332100       


Q ss_pred             ---------------------C-----------CeEEEEEcCCCcEEEEEeC----------------------------
Q 010669          400 ---------------------G-----------AVTAISFSENGYYLATAAH----------------------------  419 (504)
Q Consensus       400 ---------------------~-----------~i~~l~~s~~g~~l~s~~~----------------------------  419 (504)
                                           .           .-..++|+|+..++++...                            
T Consensus       357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  436 (689)
T 1yiq_A          357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT  436 (689)
T ss_dssp             ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred             CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence                                 0           0112688888777776521                            


Q ss_pred             -----------------Cc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeE
Q 010669          420 -----------------DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCI  479 (504)
Q Consensus       420 -----------------d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i  479 (504)
                                       ++ |+.||+.+++.+..+....   +...-.+...+.++++++.|  ++.||.    ++++.+
T Consensus       437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~----~tG~~l  509 (689)
T 1yiq_A          437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAA----DTGEKL  509 (689)
T ss_dssp             CCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEET----TTCCEE
T ss_pred             cccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEEC----CCCccc
Confidence                             25 9999999999887776542   23334566678899999888  999997    677887


Q ss_pred             EEccCCCCCCceeEEEEeecCcc
Q 010669          480 KTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       480 ~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      -.+.... ....+-+.+..+|++
T Consensus       510 w~~~~~~-~~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          510 WEQPAAS-GVMAAPVTYSVDGEQ  531 (689)
T ss_dssp             EEEECSS-CCCSCCEEEEETTEE
T ss_pred             eeeeCCC-CcccCceEEEECCEE
Confidence            7776431 112233555677653

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.13  E-value=4.8e-11  Score=88.13  Aligned_cols=52  Identities=27%  Similarity=0.535  Sum_probs=47.4

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+++.+||+++ +||+|+|.+|++|++. +.+||+++++++.++|++-
T Consensus         9 ~~C~IC~~~~~~Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n   61 (78)
T 1t1h_A            9 FRCPISLELMKDPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN   61 (78)
T ss_dssp             SSCTTTSCCCSSEEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred             CCCCCccccccCCEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence            47999999999999996 9999999999999997 6789999999998887654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.12  E-value=3.2e-07  Score=85.07  Aligned_cols=245  Identities=7%  Similarity=-0.036  Sum_probs=148.4

Q ss_pred             CEEEEEeCCCcEEEEcCCCCce-----EEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCCcceeEEeccC
Q 010669          236 DVIATGGVDTNAVLFDRPSGQI-----VTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDCKHTLKDH  309 (504)
Q Consensus       236 ~~l~sg~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~h  309 (504)
                      .+|+.+.. +.|+.+++.....     ...+......+..++|++++..|+ +-..++.|..++.....   ....+...
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---~~~~~~~~   77 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PTTIIRQD   77 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CEEEECTT
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---cEEEEECC
Confidence            34444443 4688888765432     111222234578999998655544 55567899999987632   22222222


Q ss_pred             CcCeEEEEEccCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC---CCcEEEEE
Q 010669          310 TAEVQAVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWD  385 (504)
Q Consensus       310 ~~~v~~l~~~p~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~---dg~I~iwd  385 (504)
                      ......+++++++..++.+ ...+.|.++++.......... .    .......++++|++..|+.+..   .+.|..++
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~----~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-T----GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-S----SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-C----CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence            2467899999976555544 456799999987543222221 1    1135689999996555544443   46888888


Q ss_pred             cCCCceeeeee-CCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669          386 VKSQANVAKFD-GHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA  462 (504)
Q Consensus       386 ~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~  462 (504)
                      +... ....+. ........+++++++..|+.+... + |.++|+........+..   ......++++  +..|+++..
T Consensus       153 ~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~  226 (267)
T 1npe_A          153 MDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDW  226 (267)
T ss_dssp             TTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEET
T ss_pred             cCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEEC
Confidence            7543 222222 233468899999987777666655 4 99999975443333322   2345677764  556666654


Q ss_pred             c---EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          463 D---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       463 d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      .   |.+++.    .+++.+..+... ......++++.|++
T Consensus       227 ~~~~v~~~d~----~~g~~~~~i~~g-~~~~p~gi~~~~~~  262 (267)
T 1npe_A          227 KTNSVIAMDL----AISKEMDTFHPH-KQTRLYGITIALSQ  262 (267)
T ss_dssp             TTTEEEEEET----TTTEEEEEECCS-SCCCCCCEEEECSC
T ss_pred             CCCeEEEEeC----CCCCceEEEccc-cccccceeeecCcc
Confidence            3   766665    567778887643 12246788888775

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.11  E-value=3.8e-09  Score=112.25  Aligned_cols=193  Identities=13%  Similarity=0.167  Sum_probs=125.6

Q ss_pred             cCccceeEEEEeeCCCEEEEE-----eCCCcEEEEeCCCCCCcceeE-EeccCCcCeEEEEEccCCCEEEEEeCCCe---
Q 010669          263 GHSKKVTSVKFVTEGDLFLTG-----SADKTVRVWQGSEDGNYDCKH-TLKDHTAEVQAVTVHATNKYFVTASLDNT---  333 (504)
Q Consensus       263 ~h~~~v~~l~~s~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~s~s~dg~---  333 (504)
                      +|...+..++|||||++|+-+     +...+|++||+.++.   .+. .+..  .....++|+ |++.|+.++.+..   
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~---~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ---PLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS---EEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC--
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC---CCccccCC--ceeccEEEe-CCCEEEEEEecCcccc
Confidence            355578899999999987743     333579999998863   222 1211  113567899 9999998887743   


Q ss_pred             ----------EEEEECCCCeE--EEEeecCCCCC-CCCCeEEEEECCCCCEEEEEeC----CCcEEEEEcCCCc-eeeee
Q 010669          334 ----------WCFYDLSSGIC--LTQVSDAGTDG-RPEGYTSAAFHPDGLILGTGTS----EALVKIWDVKSQA-NVAKF  395 (504)
Q Consensus       334 ----------i~iwd~~~~~~--~~~~~~~~~~~-~~~~v~~~~~~pdg~~l~~g~~----dg~I~iwd~~~~~-~~~~~  395 (504)
                                |++|++.++..  ...+..   .. +...+..+.|+|||++|+....    ++.|+++|+.++. ....+
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGA---IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESC---SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEec---CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                      99999987653  222221   12 3345788999999998865432    3589999998764 44556


Q ss_pred             eCCCCCeEEEEEcCCCcEE-EEEeCC---c-EEEEEcCCCcc--eeeeecCCCCCCeeEEEECCCCCEEEEEeCc-----
Q 010669          396 DGHVGAVTAISFSENGYYL-ATAAHD---G-VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD-----  463 (504)
Q Consensus       396 ~~~~~~i~~l~~s~~g~~l-~s~~~d---~-v~vwd~~~~~~--~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-----  463 (504)
                      ..+....... |+++|..| +.+..+   . |..+|+.++..  ...+..+  ...+.  .|++++++|+....+     
T Consensus       277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~--~~s~~g~~lv~~~~~~g~~~  351 (693)
T 3iuj_A          277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--RQQVL--TVHSGSGYLFAEYMVDATAR  351 (693)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--CSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred             eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--CCCEE--EEEEECCEEEEEEEECCeeE
Confidence            5566555555 55555544 444433   3 99999987654  3344433  22333  889999988876543     


Q ss_pred             EEEEEe
Q 010669          464 IRVYQV  469 (504)
Q Consensus       464 i~vw~~  469 (504)
                      |.+|++
T Consensus       352 l~~~d~  357 (693)
T 3iuj_A          352 VEQFDY  357 (693)
T ss_dssp             EEEECT
T ss_pred             EEEEEC
Confidence            666665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.11  E-value=2.8e-09  Score=103.29  Aligned_cols=217  Identities=11%  Similarity=0.001  Sum_probs=137.3

Q ss_pred             EEEeccCCCEEEEEe----------CCCcEEEEcCCCCceEEEcccC-------ccceeEEEEeeCCCEEEEEeC--CCc
Q 010669          228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGH-------SKKVTSVKFVTEGDLFLTGSA--DKT  288 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~s~s~--dg~  288 (504)
                      .+.++||+++++++.          .++.|.+||..+++.+.++..+       ......++|+|||++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            699999999888775          3688999999999999988643       124678999999999998875  457


Q ss_pred             EEE--EeCCCCCCcceeEE------ecc---------CCcCeEEEEE--------------------------ccCCCEE
Q 010669          289 VRV--WQGSEDGNYDCKHT------LKD---------HTAEVQAVTV--------------------------HATNKYF  325 (504)
Q Consensus       289 i~i--wd~~~~~~~~~~~~------~~~---------h~~~v~~l~~--------------------------~p~~~~l  325 (504)
                      |.+  +|..+.   ..+..      ...         ..+.+..+..                          .+++..+
T Consensus       149 v~V~~iD~~tv---~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~  225 (368)
T 1mda_H          149 AGLSVPGASDD---QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEEETTTEEE---EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEEEEchhhc---eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence            888  887540   11100      000         0000000110                          2233333


Q ss_pred             EEEeCCCeEEEEECCCCe--EEEEeecCC-----CCCCCCCeEEEEECCCCCEEEEEeC---------CCcEEEEEcCCC
Q 010669          326 VTASLDNTWCFYDLSSGI--CLTQVSDAG-----TDGRPEGYTSAAFHPDGLILGTGTS---------EALVKIWDVKSQ  389 (504)
Q Consensus       326 ~s~s~dg~i~iwd~~~~~--~~~~~~~~~-----~~~~~~~v~~~~~~pdg~~l~~g~~---------dg~I~iwd~~~~  389 (504)
                      +..+. +.+.+.|+.+..  .+..+....     ..........++++||++.++++..         ++.+.++|+.+.
T Consensus       226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~  304 (368)
T 1mda_H          226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence            44444 666666665432  111111000     0000112223789999988887543         235669999999


Q ss_pred             ceeeeeeCCCCCeEEEEEcCCCc-EEEEEe-CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          390 ANVAKFDGHVGAVTAISFSENGY-YLATAA-HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       390 ~~~~~~~~~~~~i~~l~~s~~g~-~l~s~~-~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      +.+..+.... ....+.|+|||+ .+++.. .++ |.++|+.+++.+.++...   .....+++.+
T Consensus       305 ~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg---~~P~~i~~~~  366 (368)
T 1mda_H          305 QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD---KGPESLSVQN  366 (368)
T ss_dssp             CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC---SCCCEEECCC
T ss_pred             eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC---CCCCEEEeec
Confidence            9888886443 588999999997 455555 356 999999999999888764   4566677654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.09  E-value=7.3e-09  Score=104.55  Aligned_cols=238  Identities=11%  Similarity=0.082  Sum_probs=156.8

Q ss_pred             cCCCEEEEEeC-CCcEEEEcCCCCceEEEccc-CccceeEEEE-e-eCCCEEEEEe------------------CCCcEE
Q 010669          233 YSKDVIATGGV-DTNAVLFDRPSGQIVTTLSG-HSKKVTSVKF-V-TEGDLFLTGS------------------ADKTVR  290 (504)
Q Consensus       233 ~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~-s-~~~~~l~s~s------------------~dg~i~  290 (504)
                      +||++++.... ++.|.+.|+.+.++...+.- ....+..+++ + |+++++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            47887766554 56799999999998774432 2245788888 5 8999988884                  345788


Q ss_pred             EEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC--------------------------------------
Q 010669          291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN--------------------------------------  332 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg--------------------------------------  332 (504)
                      ++|..+.   +...++.-- +.-..++++|+|+++++.+.+.                                      
T Consensus       179 vID~~t~---~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          179 AVDADKW---EVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EEETTTT---EEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEECCCC---eEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            9998874   444444421 2346678899999998888553                                      


Q ss_pred             eEEEEECCC--CeE-EEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCc------------eeeeee
Q 010669          333 TWCFYDLSS--GIC-LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQA------------NVAKFD  396 (504)
Q Consensus       333 ~i~iwd~~~--~~~-~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~~------------~~~~~~  396 (504)
                      .|.+.|..+  ++. +..+..      .....++.++|||+++++++ .+..|.++|+.+.+            .+....
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipv------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPI------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEE------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             cEEEEeCcccCCceeEEEEec------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence            366677766  433 333321      12467899999999777655 67899999998653            223332


Q ss_pred             CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC----------CcceeeeecCCCCC---CeeEEEECCCCCEEEEEeC
Q 010669          397 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK----------LKNFRSFESSDSET---PTNSVDFDHSGSYLAVASA  462 (504)
Q Consensus       397 ~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~----------~~~~~~~~~~~~~~---~v~~i~~~~~g~~l~~~~~  462 (504)
                       -......++|+++|...++.--++ |.+||+.+          .+.+.++..+...+   .-..+.++|||++|++...
T Consensus       329 -vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          329 -LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             -CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             -CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence             234678999999994334444556 99999977          44556666542100   0122355899999999854


Q ss_pred             ---c-E-----------EEEEeeccCccceeEEEcc
Q 010669          463 ---D-I-----------RVYQVASVKADWNCIKTFP  483 (504)
Q Consensus       463 ---d-i-----------~vw~~~~~~~~~~~i~~~~  483 (504)
                         | +           .++|+..  ...+.+...+
T Consensus       408 ~skdr~~~~gp~~~~~~ql~dis~--~~m~lv~d~p  441 (595)
T 1fwx_A          408 FSKDRFLNVGPLKPENDQLIDISG--DKMVLVHDGP  441 (595)
T ss_dssp             CCTTSSCCCCSSCCEEEEEEECSS--SSCEEEEEEE
T ss_pred             CCccccccCCCCCCCcceEEEcCC--CcEEEEEEEc
Confidence               4 5           8999822  3345555443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.07  E-value=1.6e-08  Score=102.09  Aligned_cols=234  Identities=12%  Similarity=0.093  Sum_probs=160.7

Q ss_pred             EEEEeCCCcEEEEcCCCCceEEEccc---------------------------------C------ccceeEEEEee---
Q 010669          238 IATGGVDTNAVLFDRPSGQIVTTLSG---------------------------------H------SKKVTSVKFVT---  275 (504)
Q Consensus       238 l~sg~~dg~i~vwd~~~~~~~~~~~~---------------------------------h------~~~v~~l~~s~---  275 (504)
                      +.+|+..|.++|+-+.+++.+..+.-                                 +      .+.......|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            56788889999998888776665320                                 0      11223345554   


Q ss_pred             --CCCEEEEEeC-CCcEEEEeCCCCCCcceeEEecc-CCcCeEEEEE-c-cCCCEEEEEe------------------CC
Q 010669          276 --EGDLFLTGSA-DKTVRVWQGSEDGNYDCKHTLKD-HTAEVQAVTV-H-ATNKYFVTAS------------------LD  331 (504)
Q Consensus       276 --~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~-~-p~~~~l~s~s------------------~d  331 (504)
                        ||++++.+.. ++.|.+.|+.+.   ++...+.- .......+++ + |++.++++++                  .+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~---~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVM---KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTT---EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCc---eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence              7887776654 557999999885   55553321 2345788887 5 8999999885                  24


Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC--------------------------------
Q 010669          332 NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA--------------------------------  379 (504)
Q Consensus       332 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg--------------------------------  379 (504)
                      +.+.++|..+.+...++...   +   ....++++|||+++++.+.+.                                
T Consensus       175 ~~vtvID~~t~~v~~qI~Vg---g---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G  248 (595)
T 1fwx_A          175 NVFTAVDADKWEVAWQVLVS---G---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  248 (595)
T ss_dssp             EEEEEEETTTTEEEEEEEES---S---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             ceEEEEECCCCeEEEEEEeC---C---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence            57999999999888887632   1   245678999999998887553                                


Q ss_pred             ------cEEEEEcCC--Cce-eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCc------------ceeee
Q 010669          380 ------LVKIWDVKS--QAN-VAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLK------------NFRSF  436 (504)
Q Consensus       380 ------~I~iwd~~~--~~~-~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~------------~~~~~  436 (504)
                            .|.|.|.++  ++. +..+.. .....++.++|||+++++++...  |.++|+.+.+            ....+
T Consensus       249 k~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v  327 (595)
T 1fwx_A          249 DYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  327 (595)
T ss_dssp             CSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred             CeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc
Confidence                  367777776  444 334432 23567899999999999887663  9999999753            12222


Q ss_pred             ecCCCCCCeeEEEECCCCCEEEEEeC-c--EEEEEeecc------CccceeEEEccCC
Q 010669          437 ESSDSETPTNSVDFDHSGSYLAVASA-D--IRVYQVASV------KADWNCIKTFPDL  485 (504)
Q Consensus       437 ~~~~~~~~v~~i~~~~~g~~l~~~~~-d--i~vw~~~~~------~~~~~~i~~~~~h  485 (504)
                      ..   ......++|+++| ++++... +  +.+|++...      .+....+.++..|
T Consensus       328 ~v---G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~  381 (595)
T 1fwx_A          328 EL---GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH  381 (595)
T ss_dssp             BC---CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred             CC---CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc
Confidence            22   4578899999999 6666543 3  999998552      1236778888776

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.06  E-value=4.7e-08  Score=89.62  Aligned_cols=198  Identities=5%  Similarity=-0.027  Sum_probs=136.2

Q ss_pred             CeEEEEeccCCCEEEEEeC--CCcEEEEcCCCCceEEEcccCcc-ceeEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCCc
Q 010669          225 GIVSLDIHYSKDVIATGGV--DTNAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNY  300 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~  300 (504)
                      ....+.|++++.++++.+.  ++.|.++|+.+++.+..+.-... ....+++.  ++.| ++.-.++.+.++|..+.   
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~---   96 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL---   96 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT---
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCC---
Confidence            4578999998765555543  57999999999999888752221 22345553  5444 44556889999999875   


Q ss_pred             ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010669          301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL  380 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~  380 (504)
                      +.+.++......  ...++++|+.++++..++.|.++|..+.+....+........-..++.+.|. +|.+++....++.
T Consensus        97 ~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A           97 SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence            555655422122  2334567887777777899999999999888777632110111236678888 7876666667899


Q ss_pred             EEEEEcCCCceeeeeeCC-------------CCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCC
Q 010669          381 VKIWDVKSQANVAKFDGH-------------VGAVTAISFSENGYYLATAAHD-G-VKLWDLRKL  430 (504)
Q Consensus       381 I~iwd~~~~~~~~~~~~~-------------~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~  430 (504)
                      |.+.|..+++.+..+...             ....+.|+|+|++..|++++.. . |.+.++...
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            999999999988887531             1356899999998766666654 4 888887654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.06  E-value=5.9e-11  Score=105.32  Aligned_cols=53  Identities=25%  Similarity=0.543  Sum_probs=47.9

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC--CCCC--CCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG--KCPV--TGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~--~~~~~~~~~~~~~   53 (504)
                      |.|+||++++++||++.+|||+|||.+|++|++++|  +||+  |+++++..+|++=
T Consensus       182 l~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN  238 (267)
T 3htk_C          182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD  238 (267)
T ss_dssp             SBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred             eECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence            579999999999999877999999999999999875  5999  5699999999764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.05  E-value=6.7e-08  Score=87.53  Aligned_cols=197  Identities=11%  Similarity=0.129  Sum_probs=136.9

Q ss_pred             ceEEEcccCccc--eeEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCCcceeEEeccCCcCe--EEEEEccCCCEEEEEe
Q 010669          256 QIVTTLSGHSKK--VTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDCKHTLKDHTAEV--QAVTVHATNKYFVTAS  329 (504)
Q Consensus       256 ~~~~~~~~h~~~--v~~l~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v--~~l~~~p~~~~l~s~s  329 (504)
                      +.+.++. |...  ...+.|+ ++.++.+++.+|  .|+++|+.++   +....+... ...  ..+.+  +++.|....
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tg---kv~~~~~l~-~~~FgeGit~--~g~~ly~lt  103 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESG---KTLQQIELG-KRYFGEGISD--WKDKIVGLT  103 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTC---CEEEEEECC-TTCCEEEEEE--ETTEEEEEE
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCC---cEEEEEecC-CccceeEEEE--eCCEEEEEE
Confidence            4556664 4433  4678888 677777777766  8999999986   444444322 223  33444  455555554


Q ss_pred             -CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC-----CCeE
Q 010669          330 -LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-----GAVT  403 (504)
Q Consensus       330 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-----~~i~  403 (504)
                       .++.+.+||..+.+.+..+...   +     ....+.+|+..|+.+..++.|.++|..+.+.+.++....     ..++
T Consensus       104 w~~~~v~v~D~~t~~~~~ti~~~---~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A          104 WKNGLGFVWNIRNLRQVRSFNYD---G-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN  175 (262)
T ss_dssp             SSSSEEEEEETTTCCEEEEEECS---S-----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred             eeCCEEEEEECccCcEEEEEECC---C-----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence             5889999999999999988742   1     112233567777776667889999999998877765321     3456


Q ss_pred             EEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC----------CCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          404 AISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD----------SETPTNSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       404 ~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~----------~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                      .+.|. +|...+..-.+. |.+.|..+++.+..+....          .....+.|+|+|+++.|++.+.. =++|.+
T Consensus       176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev  252 (262)
T 3nol_A          176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEI  252 (262)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEE
Confidence            67886 776554444445 9999999999988887631          12356899999999999999988 777776

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.04  E-value=1.2e-07  Score=86.81  Aligned_cols=200  Identities=12%  Similarity=0.107  Sum_probs=135.2

Q ss_pred             ceEEEcccCcc--ceeEEEEeeCCCEEEEEeC--CCcEEEEeCCCCCCcceeEEecc-CCcCeEEEEEccCCCEEEEE-e
Q 010669          256 QIVTTLSGHSK--KVTSVKFVTEGDLFLTGSA--DKTVRVWQGSEDGNYDCKHTLKD-HTAEVQAVTVHATNKYFVTA-S  329 (504)
Q Consensus       256 ~~~~~~~~h~~--~v~~l~~s~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~l~s~-s  329 (504)
                      +.+.++. |..  ....+.|++++.++++.+.  ++.|.++|..++   +.+..+.. .......+++.  ++.++.+ -
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg---~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~   83 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTG---KVENIHKMDDSYFGEGLTLL--NEKLYQVVW   83 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTC---CEEEEEECCTTCCEEEEEEE--TTEEEEEET
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCC---CEEEEEecCCCcceEEEEEe--CCEEEEEEe
Confidence            4556664 443  3579999988755555543  579999999986   44444431 11223455555  4455444 4


Q ss_pred             CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC-----CCeEE
Q 010669          330 LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-----GAVTA  404 (504)
Q Consensus       330 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-----~~i~~  404 (504)
                      .++.+.++|..+.+.+..+...  .+  .   ...+++||+.++++..++.|.++|..+.+.+..+.-..     ..++.
T Consensus        84 ~~~~v~viD~~t~~v~~~i~~g--~~--~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSNIKNFTHQ--MK--D---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             TCSEEEEEETTTTEEEEEEECC--SS--S---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             cCCEEEEEECCCCcEEEEEECC--CC--C---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence            5789999999999998887532  01  1   13355577777777778999999999988877765321     24678


Q ss_pred             EEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC-----------CCCCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669          405 ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-----------SETPTNSVDFDHSGSYLAVASAD---IRVYQV  469 (504)
Q Consensus       405 l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~-----------~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~  469 (504)
                      +.|. +|...+....++ |.+.|..+++.+..+....           .....+.++|+|+++.+++++..   +.+.++
T Consensus       157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence            8888 775444443445 9999999999988887531           12356899999999888877765   555555

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.03  E-value=7.7e-09  Score=98.97  Aligned_cols=245  Identities=14%  Similarity=0.043  Sum_probs=148.3

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      .+.++...+++. |..++.+  |..||. +++.+..+...........+.  +..+..++.++.|..+|.. +   ....
T Consensus        61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g---~~~~  130 (330)
T 3hxj_A           61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-G---TEKW  130 (330)
T ss_dssp             EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-S---CEEE
T ss_pred             cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-C---CEEE
Confidence            346666666665 4444444  888886 565544443333223333333  4567778888999999987 3   3333


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW  384 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iw  384 (504)
                      ....+...+.++...+++. +..++.++.|..||.. ++.......     ....+.++.+.++|.+++. +  +.|..|
T Consensus       131 ~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~-----~~~~~~~~~~d~~g~l~v~-t--~~l~~~  200 (330)
T 3hxj_A          131 RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT-----NDAITSAASIGKDGTIYFG-S--DKVYAI  200 (330)
T ss_dssp             EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC-----SSCCCSCCEECTTCCEEEE-S--SSEEEE
T ss_pred             EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec-----CCCceeeeEEcCCCEEEEE-e--CEEEEE
Confidence            3344444556666666665 6667888999999998 776655542     1234667778888876554 4  789999


Q ss_pred             EcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-
Q 010669          385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-  463 (504)
Q Consensus       385 d~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-  463 (504)
                      | .+++.+..+......+.++.+.++|.+.+....++|..+|. ++..+..+...  ...+..+.+++++.+. +++.+ 
T Consensus       201 d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g~l~-v~t~~g  275 (330)
T 3hxj_A          201 N-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTDTIY-FGSYDG  275 (330)
T ss_dssp             C-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTSCEE-EECTTC
T ss_pred             C-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCCeEE-EecCCC
Confidence            9 77777766665556788889988886655444445888874 55555555443  2334456667666544 45555 


Q ss_pred             -EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          464 -IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       464 -i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                       +..++.     +++.+..+...  ...+.++.+..+|.
T Consensus       276 gl~~~d~-----~g~~~~~~~~~--~~~~~~~~~d~~g~  307 (330)
T 3hxj_A          276 HLYAINP-----DGTEKWNFETG--SWIIATPVIDENGT  307 (330)
T ss_dssp             EEEEECT-----TSCEEEEEECS--SCCCSCCEECTTCC
T ss_pred             CEEEECC-----CCcEEEEEEcC--CccccceEEcCCCE
Confidence             555552     34444444332  34455555545554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.03  E-value=6.6e-11  Score=115.77  Aligned_cols=186  Identities=15%  Similarity=0.101  Sum_probs=99.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCC
Q 010669          276 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG  355 (504)
Q Consensus       276 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  355 (504)
                      ++..+++++.||.|..||..++   +....+..  +.+.+..+..++..+++++.||.|+.||..+++.+......    
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG---~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~----   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG---SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT----   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC---CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC----
T ss_pred             eCCEEEEEcCCCEEEEEECCCC---CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc----
Confidence            5778999999999999999886   44444443  44555555567778888889999999999988776554311    


Q ss_pred             CCCCeE-EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcce
Q 010669          356 RPEGYT-SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF  433 (504)
Q Consensus       356 ~~~~v~-~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~  433 (504)
                      ....+. +..+. ++..+++|+.+|.|+.||.++|+.+..+..+.    ...++|++..+++++.++ |+.||.++++.+
T Consensus        79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             HHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence            000010 00111 34567788889999999999999887776543    234567888888888887 999999999877


Q ss_pred             eeeecCCCCCCeeEEEECCCC---CEEEEEeCc--EEEEEeeccCccceeEEEcc
Q 010669          434 RSFESSDSETPTNSVDFDHSG---SYLAVASAD--IRVYQVASVKADWNCIKTFP  483 (504)
Q Consensus       434 ~~~~~~~~~~~v~~i~~~~~g---~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~  483 (504)
                      ..+....    .....++.+.   ..+++++.+  +..||.    .+++.+-.+.
T Consensus       154 W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~----~tG~~~W~~~  200 (369)
T 2hz6_A          154 WNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDS----ESGDVLWIQN  200 (369)
T ss_dssp             CEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECT----TTCCEEEEEE
T ss_pred             EeEeccc----ccCccccCCccccceEEEECCCCEEEEEEC----CCCcEEEEec
Confidence            6665321    1223344432   445566666  778887    3444444443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.00  E-value=7.4e-07  Score=82.54  Aligned_cols=219  Identities=11%  Similarity=0.031  Sum_probs=140.0

Q ss_pred             CeEEEEeccCCCEE-EEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCCcce
Q 010669          225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       225 ~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      .+..++|++++..| ++-..++.|.+++...+.....+.........+++++++..| ++-...+.|.+++.....   .
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~---~  113 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---R  113 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---C
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---E
Confidence            46789999976555 455567899999987655443333333567899999865544 455567889999986531   1


Q ss_pred             eEEeccCCcCeEEEEEccCCCEEEEEeC---CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE-EEEeCC
Q 010669          303 KHTLKDHTAEVQAVTVHATNKYFVTASL---DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGTSE  378 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l-~~g~~d  378 (504)
                      .............++++|++..|+.+..   .+.|..+++..... ..+..    ........+++++++..| ++-...
T Consensus       114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~----~~~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQ----DNLGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEEC----TTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEEE----CCCCCCcEEEEcCCCCEEEEEECCC
Confidence            1112222245789999997666665554   36888888865432 22221    112357889999976655 455566


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      +.|.++|+........+.+ ......+++.  +..|+.+..+ + |.++|..+++.+..+.... ......+++.|++.
T Consensus       189 ~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~~  263 (267)
T 1npe_A          189 HRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQC  263 (267)
T ss_dssp             TEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSCC
T ss_pred             CEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCccC
Confidence            8999999975443333332 2345677764  4455555543 4 9999999998888876432 12467788888764

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=98.99  E-value=1.8e-10  Score=120.34  Aligned_cols=52  Identities=19%  Similarity=0.403  Sum_probs=48.7

Q ss_pred             CccccCCCCCCCceEeCCCC-eeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSG-LLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      |.|+||+++|+|||+.| || ++|||..|++|+..+++||+|+++|+.++|||-
T Consensus       892 F~cPIs~~lM~DPVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN  944 (968)
T 3m62_A          892 FLDPLMYTIMKDPVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN  944 (968)
T ss_dssp             GBCTTTCSBCSSEEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred             hCCcchhhHHhCCeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence            57999999999999998 65 799999999999999999999999999999876

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.97  E-value=5.6e-08  Score=102.58  Aligned_cols=220  Identities=12%  Similarity=0.173  Sum_probs=148.6

Q ss_pred             CCEEEEEeC------CCcEEEEcCCCCceEEEcccCccc--------------------------------eeEEEEeeC
Q 010669          235 KDVIATGGV------DTNAVLFDRPSGQIVTTLSGHSKK--------------------------------VTSVKFVTE  276 (504)
Q Consensus       235 ~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~h~~~--------------------------------v~~l~~s~~  276 (504)
                      +..+++++.      +|.|+.||..+|+.+..+......                                ...++++++
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~  253 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE  253 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence            345555543      689999999999988776532111                                135678888


Q ss_pred             CCEEEEEeCCC-------------------cEEEEeCCCCCCcceeEEec--cCC-------cCeEEEEEccCC---CEE
Q 010669          277 GDLFLTGSADK-------------------TVRVWQGSEDGNYDCKHTLK--DHT-------AEVQAVTVHATN---KYF  325 (504)
Q Consensus       277 ~~~l~s~s~dg-------------------~i~iwd~~~~~~~~~~~~~~--~h~-------~~v~~l~~~p~~---~~l  325 (504)
                      +..++.+..++                   .|..+|..++   +..-.++  .|.       .....+....+|   ..+
T Consensus       254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG---~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l  330 (677)
T 1kb0_A          254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG---KYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVI  330 (677)
T ss_dssp             TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEE
T ss_pred             CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC---CEEEEEecCCCcccccccCCCcEEEecccCCcEeeEE
Confidence            88888887664                   4899999886   3333332  221       122233334467   689


Q ss_pred             EEEeCCCeEEEEECCCCeEEEEeecCCCC------CCCC------------------------CeEEEEECCCCCEEEEE
Q 010669          326 VTASLDNTWCFYDLSSGICLTQVSDAGTD------GRPE------------------------GYTSAAFHPDGLILGTG  375 (504)
Q Consensus       326 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~------------------------~v~~~~~~pdg~~l~~g  375 (504)
                      +.++.+|.++++|..+|+.+..+......      ....                        .-..++++|++.++++.
T Consensus       331 ~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~  410 (677)
T 1kb0_A          331 LHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLP  410 (677)
T ss_dssp             EECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEE
T ss_pred             EEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEe
Confidence            99999999999999999988766522100      0000                        01257889988888775


Q ss_pred             eC-------------------------------------------CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCc
Q 010669          376 TS-------------------------------------------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY  412 (504)
Q Consensus       376 ~~-------------------------------------------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~  412 (504)
                      ..                                           .|.|..||+.+++.+-.+. +..++....+...+.
T Consensus       411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~  489 (677)
T 1kb0_A          411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGN  489 (677)
T ss_dssp             EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTT
T ss_pred             ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCC
Confidence            43                                           2789999999999887776 334445555666777


Q ss_pred             EEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC-EEEE
Q 010669          413 YLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAV  459 (504)
Q Consensus       413 ~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~-~l~~  459 (504)
                      +++.++.++ +++||.++++.+..+.... .....-+.|..+|+ |+++
T Consensus       490 ~v~~g~~dg~l~a~D~~tG~~lw~~~~~~-~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          490 VVFQGTADGRLVAYHAATGEKLWEAPTGT-GVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEEE
T ss_pred             EEEEECCCCcEEEEECCCCceeeeeeCCC-CcccCCEEEEeCCEEEEEE
Confidence            888888888 9999999999999887653 22334466667775 4444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.97  E-value=5.3e-08  Score=93.08  Aligned_cols=213  Identities=11%  Similarity=0.073  Sum_probs=143.7

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeE
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ  314 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  314 (504)
                      +..+..++.++.|..+|.. ++....+..+...+.++...+++. +..++.++.|..||.. +   .....+......+.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g---~~~~~~~~~~~~~~  180 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-G---TEKWRFKTNDAITS  180 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-S---CEEEEEECSSCCCS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-C---CEeEEEecCCCcee
Confidence            5567778888999999988 777766665555567777766665 6667788999999987 3   33334444445566


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 010669          315 AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK  394 (504)
Q Consensus       315 ~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~  394 (504)
                      ++...+++..++ ++  +.+..|| .+++.......     ....+.++...++|.+ .+++.++.|..+|. +++.+..
T Consensus       181 ~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~-----~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~  249 (330)
T 3hxj_A          181 AASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA-----GYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWR  249 (330)
T ss_dssp             CCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC-----SSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEE
T ss_pred             eeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc-----CCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEE
Confidence            777776776444 44  8899999 67766655542     2245778888888865 44566788888874 5666666


Q ss_pred             eeCCCCCeEEEEEcCCCcEEEEEeCC-cEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          395 FDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       395 ~~~~~~~i~~l~~s~~g~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      +......+..+.+.++|. |..++.+ +|..+|. +++....+...  ...+.++..+++|.+.+ ++.+  +++...
T Consensus       250 ~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~--~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~  322 (330)
T 3hxj_A          250 FKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETG--SWIIATPVIDENGTIYF-GTRNGKFYALFN  322 (330)
T ss_dssp             EECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECS--SCCCSCCEECTTCCEEE-ECTTSCEEEEEC
T ss_pred             eeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcC--CccccceEEcCCCEEEE-EcCCCeEEEEec
Confidence            654444455566766665 4556666 4999995 67666666543  45677788888887655 5555  655553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.96  E-value=8.6e-07  Score=84.62  Aligned_cols=231  Identities=10%  Similarity=0.046  Sum_probs=144.3

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc--------------------CccceeEEEEee-CCCEEEEEe
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG--------------------HSKKVTSVKFVT-EGDLFLTGS  284 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--------------------h~~~v~~l~~s~-~~~~l~s~s  284 (504)
                      ..+++|++++++++++..++.|..|+..++... .+..                    ....+..+++.+ +++ |+.+.
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d   98 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD   98 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence            457889999997888888999999998765432 2210                    113578899987 565 55554


Q ss_pred             CCCcEEEEeCCCCCCcceeEE-ecc-CCcCeEEEEEcc-CCCEEEEEeC-----------------CCeEEEEECCCCeE
Q 010669          285 ADKTVRVWQGSEDGNYDCKHT-LKD-HTAEVQAVTVHA-TNKYFVTASL-----------------DNTWCFYDLSSGIC  344 (504)
Q Consensus       285 ~dg~i~iwd~~~~~~~~~~~~-~~~-h~~~v~~l~~~p-~~~~l~s~s~-----------------dg~i~iwd~~~~~~  344 (504)
                      ..+.|..+|..++. ...+.. ..+ .......+++.+ +|+.+++-..                 ++.|..||..+++.
T Consensus        99 ~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           99 CYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             TTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             CCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            44558888876421 111111 111 113478899999 8987766432                 36799999887764


Q ss_pred             EEEeecCCCCCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeC--
Q 010669          345 LTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAH--  419 (504)
Q Consensus       345 ~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g-~~dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~--  419 (504)
                      ......      ......++++|+|+.|+++ +.++.|.+|++....  ....+....+ ...+++.++|.+.++...  
T Consensus       178 ~~~~~~------~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~  250 (322)
T 2fp8_A          178 TLLLKE------LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEEL  250 (322)
T ss_dssp             EEEEEE------ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEET
T ss_pred             EEeccC------CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcc
Confidence            433221      1235679999999866555 566899999987421  1122221223 788999999987776654  


Q ss_pred             --------Cc-EEEEEcCCCcceeeeecCCC--CCCeeEEEECCCCCEEEEEeC-c--EEEEEe
Q 010669          420 --------DG-VKLWDLRKLKNFRSFESSDS--ETPTNSVDFDHSGSYLAVASA-D--IRVYQV  469 (504)
Q Consensus       420 --------d~-v~vwd~~~~~~~~~~~~~~~--~~~v~~i~~~~~g~~l~~~~~-d--i~vw~~  469 (504)
                              .+ |..+|.. ++.+..+.....  ...+..+++. ++ .|++++. +  |.++++
T Consensus       251 ~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             TSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC
T ss_pred             cccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEec
Confidence                    34 8888864 666666654421  2346667663 44 4555533 3  777776

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.95  E-value=4.2e-07  Score=88.81  Aligned_cols=233  Identities=11%  Similarity=0.069  Sum_probs=143.0

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCe
Q 010669          234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV  313 (504)
Q Consensus       234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  313 (504)
                      ++..+++++.++.|..+|..+|+.+..+............  .+..++.++.++.|..+|..++   +............
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG---~~~W~~~~~~~~~  176 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADG---AVKWTVNLDMPSL  176 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTC---CEEEEEECCC---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCC---cEEEEEeCCCCce
Confidence            4567788888999999999999987766543322222222  2457888889999999999876   3333332211110


Q ss_pred             -----EEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCC--CCeEEEEECC--CCCEEEEEeCCCcEEEE
Q 010669          314 -----QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAAFHP--DGLILGTGTSEALVKIW  384 (504)
Q Consensus       314 -----~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p--dg~~l~~g~~dg~I~iw  384 (504)
                           .....  .+..++.++.++.+..+|..+++...........+..  ..+..+...|  .+..+++++.+|.+..+
T Consensus       177 ~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~  254 (376)
T 3q7m_A          177 SLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL  254 (376)
T ss_dssp             --CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred             eecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence                 11111  2457888888999999999999887766532110000  0000011112  34567777889999999


Q ss_pred             EcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       385 d~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      |.++++.+.....  .....+..  ++..++.++.++ |..+|..+++......... ...+.....  .+..|++++.+
T Consensus       255 d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~  327 (376)
T 3q7m_A          255 DLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-HRLLTSPVL--YNGNLVVGDSE  327 (376)
T ss_dssp             ETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTT-TSCCCCCEE--ETTEEEEECTT
T ss_pred             ECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccC-CCcccCCEE--ECCEEEEEeCC
Confidence            9999988766542  23445544  355666677776 9999999998776655221 112222222  25677777776


Q ss_pred             --EEEEEeeccCccceeEEEccC
Q 010669          464 --IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       464 --i~vw~~~~~~~~~~~i~~~~~  484 (504)
                        +.++|.    .+++.+..+..
T Consensus       328 g~l~~~d~----~tG~~~~~~~~  346 (376)
T 3q7m_A          328 GYLHWINV----EDGRFVAQQKV  346 (376)
T ss_dssp             SEEEEEET----TTCCEEEEEEC
T ss_pred             CeEEEEEC----CCCcEEEEEec
Confidence              777776    45555555543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.94  E-value=3.2e-07  Score=83.11  Aligned_cols=199  Identities=11%  Similarity=0.085  Sum_probs=135.6

Q ss_pred             ceEEEcccCccc--eeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCe
Q 010669          256 QIVTTLSGHSKK--VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT  333 (504)
Q Consensus       256 ~~~~~~~~h~~~--v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~  333 (504)
                      +.+.++. |...  ...+.|+ ++.++++.+.+|.|+++|+.++.   .+..+......-..+++.. +..++..-.++.
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgk---v~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~  117 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQ---PVWMERLGNIFAEGLASDG-ERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSS---CSEEEECTTCCEEEEEECS-SCEEEEESSSCE
T ss_pred             EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCc---EEeEECCCCcceeEEEEeC-CEEEEEEccCCE
Confidence            4555664 4332  3678886 46677788888999999999874   3333311111223455542 334444456889


Q ss_pred             EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC-----CCeEEEEEc
Q 010669          334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-----GAVTAISFS  408 (504)
Q Consensus       334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-----~~i~~l~~s  408 (504)
                      +.+||..+.+.+..+...   +.   -..++  +|+..|+.+..++.|.++|..+.+.+.++....     ..++.+.|.
T Consensus       118 v~V~D~~Tl~~~~ti~~~---~e---GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~  189 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYS---GE---GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA  189 (268)
T ss_dssp             EEEEETTTTEEEEEEECS---SC---CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             EEEEECCcCcEEEEEeCC---Cc---eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence            999999999999988742   11   12333  567778877779999999999998887765321     245778887


Q ss_pred             CCCcEEEEEeCCc-EEEEEcCCCcceeeeecC-----------CCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          409 ENGYYLATAAHDG-VKLWDLRKLKNFRSFESS-----------DSETPTNSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       409 ~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~-----------~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                       +|...+...... |.+.|..+++.+..+...           ......+.|+|+|+++.|++.+.. =++|.+
T Consensus       190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev  262 (268)
T 3nok_A          190 -NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEV  262 (268)
T ss_dssp             -TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEE
T ss_pred             -CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEE
Confidence             776554443444 999999999988887753           112467899999998888888877 677765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.94  E-value=2.1e-07  Score=84.30  Aligned_cols=188  Identities=12%  Similarity=0.071  Sum_probs=130.7

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCC--cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEE-eCCCcEEEEeCCCCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDGN  299 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-s~dg~i~iwd~~~~~~  299 (504)
                      ..-...+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+.... ........++++.|... -.++.+.+||..+.  
T Consensus        42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~--  117 (262)
T 3nol_A           42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNL--  117 (262)
T ss_dssp             TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTC--
T ss_pred             CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccC--
Confidence            3445778888 677777777766  89999999999988876433 34443333445555544 46889999999876  


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCC-CCeEEEEECCCCCEEEEEeCC
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP-EGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~v~~~~~~pdg~~l~~g~~d  378 (504)
                       +.+.++.... .=..++  ++++.|+.+..++.|.++|..+.+....+..... +.. ..++.+.|. +|.+++..-.+
T Consensus       118 -~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~-g~~~~~lNELe~~-~G~lyan~w~~  191 (262)
T 3nol_A          118 -RQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH-GEELPELNELEWV-DGEIFANVWQT  191 (262)
T ss_dssp             -CEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             -cEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC-CccccccceeEEE-CCEEEEEEccC
Confidence             5566665322 223343  5677777776688899999999988887763211 111 334567776 78777766678


Q ss_pred             CcEEEEEcCCCceeeeeeCC------------CCCeEEEEEcCCCcEEEEEeCC
Q 010669          379 ALVKIWDVKSQANVAKFDGH------------VGAVTAISFSENGYYLATAAHD  420 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~------------~~~i~~l~~s~~g~~l~s~~~d  420 (504)
                      +.|.+.|.++++.+..+...            ....+.|+|+|++..|++.+..
T Consensus       192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            89999999999988777531            1356899999988877777755

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.94  E-value=1.1e-07  Score=100.60  Aligned_cols=212  Identities=11%  Similarity=0.158  Sum_probs=142.3

Q ss_pred             CCcEEEEcCCCCceEEEcccCc-------------------------------cceeEEEEeeCCCEEEEEeCCCc----
Q 010669          244 DTNAVLFDRPSGQIVTTLSGHS-------------------------------KKVTSVKFVTEGDLFLTGSADKT----  288 (504)
Q Consensus       244 dg~i~vwd~~~~~~~~~~~~h~-------------------------------~~v~~l~~s~~~~~l~s~s~dg~----  288 (504)
                      +|.|+.||..+|+.+..+....                               .....++++|++.+++.+..++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            6899999999999887664210                               01125778888888888887764    


Q ss_pred             ---------------EEEEeCCCCCCcceeEEecc--CC-------cCeEEEEEccCCC---EEEEEeCCCeEEEEECCC
Q 010669          289 ---------------VRVWQGSEDGNYDCKHTLKD--HT-------AEVQAVTVHATNK---YFVTASLDNTWCFYDLSS  341 (504)
Q Consensus       289 ---------------i~iwd~~~~~~~~~~~~~~~--h~-------~~v~~l~~~p~~~---~l~s~s~dg~i~iwd~~~  341 (504)
                                     |..||..++   +.+-.++.  |.       .++.......+|+   .++.++.+|.++++|.++
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG---~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t  338 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTG---EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT  338 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTC---CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             CCCCCCCCCceeeeeEEEEEccCC---ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC
Confidence                           999999886   33333332  21       2222223333564   788999999999999999


Q ss_pred             CeEEEEeecCCCC-----------------------CCC-----------CCeEEEEECCCCCEEEEEeC----------
Q 010669          342 GICLTQVSDAGTD-----------------------GRP-----------EGYTSAAFHPDGLILGTGTS----------  377 (504)
Q Consensus       342 ~~~~~~~~~~~~~-----------------------~~~-----------~~v~~~~~~pdg~~l~~g~~----------  377 (504)
                      |+.+.........                       ...           ..-..++|+|+..+++++..          
T Consensus       339 G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~  418 (689)
T 1yiq_A          339 GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIP  418 (689)
T ss_dssp             CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCS
T ss_pred             CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecc
Confidence            9987544321100                       000           01123788998887777532          


Q ss_pred             -----------------------------------CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-
Q 010669          378 -----------------------------------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-  421 (504)
Q Consensus       378 -----------------------------------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-  421 (504)
                                                         +|.|..||+.+++.+-.+..+. ++..-.+...|.+++.++.|+ 
T Consensus       419 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~  497 (689)
T 1yiq_A          419 EAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGR  497 (689)
T ss_dssp             SCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSE
T ss_pred             ccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCc
Confidence                                               3789999999999888776443 333345566778899999998 


Q ss_pred             EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC-EEEEE
Q 010669          422 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVA  460 (504)
Q Consensus       422 v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~  460 (504)
                      |+.||.++++.+..+.... .....-+.|..+|+ |+++.
T Consensus       498 l~a~D~~tG~~lw~~~~~~-~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          498 VIAYAADTGEKLWEQPAAS-GVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             EEEEETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEEEE
T ss_pred             EEEEECCCCccceeeeCCC-CcccCceEEEECCEEEEEEE
Confidence            9999999999998887643 22223467777775 55544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.94  E-value=6.1e-07  Score=80.55  Aligned_cols=199  Identities=14%  Similarity=0.139  Sum_probs=135.1

Q ss_pred             ceEEEcccCcc--ceeEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCCcceeEEeccCCc-CeEEEEEccCCCEEEEEeC
Q 010669          256 QIVTTLSGHSK--KVTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDCKHTLKDHTA-EVQAVTVHATNKYFVTASL  330 (504)
Q Consensus       256 ~~~~~~~~h~~--~v~~l~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~-~v~~l~~~p~~~~l~s~s~  330 (504)
                      +.+.++. |..  -.-.+.|+. +.++.+.+.+|  .|+.+|+.++   +....+..... .-..+++. .+..+...-.
T Consensus        10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg---kv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~   83 (243)
T 3mbr_X           10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG---RILQRAEVPPPYFGAGIVAW-RDRLIQLTWR   83 (243)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC---CEEEEEECCTTCCEEEEEEE-TTEEEEEESS
T ss_pred             EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCC---CEEEEEeCCCCcceeEEEEe-CCEEEEEEee
Confidence            4556663 443  355888875 56666666654  8999999986   44444432221 12334443 2334444456


Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCC-----CCeEEE
Q 010669          331 DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-----GAVTAI  405 (504)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-----~~i~~l  405 (504)
                      ++.+.+||..+.+.+..+...   +   .-..++  +|+..|+++..++.|.++|..+.+.+.++....     ..++.+
T Consensus        84 ~~~v~v~D~~tl~~~~ti~~~---~---~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL  155 (243)
T 3mbr_X           84 NHEGFVYDLATLTPRARFRYP---G---EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL  155 (243)
T ss_dssp             SSEEEEEETTTTEEEEEEECS---S---CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             CCEEEEEECCcCcEEEEEeCC---C---CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence            889999999999999988742   1   113343  566667777778999999999998877775321     356677


Q ss_pred             EEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC-----------CCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          406 SFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-----------SETPTNSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       406 ~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~-----------~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                      .|. +|..++...... |.+.|..+++.+..+....           .....+.|+|+|+++.|++.+.. =++|.+
T Consensus       156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v  231 (243)
T 3mbr_X          156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEI  231 (243)
T ss_dssp             EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEE
Confidence            776 676555443444 9999999999988877431           12356899999999999999888 777776

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.88  E-value=1.1e-06  Score=85.72  Aligned_cols=223  Identities=10%  Similarity=0.046  Sum_probs=136.3

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccC---------ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEE
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGH---------SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h---------~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  305 (504)
                      +..+++++.++.|..||..+|+.+..+...         ...+.+. ...++..++.++.++.|..+|..++   +....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG---~~~W~  128 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDG---TVAWQ  128 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTC---CEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCC---CEEEE
Confidence            677888888999999999999987666532         1222222 2224567888899999999999876   33333


Q ss_pred             eccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Q 010669          306 LKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD  385 (504)
Q Consensus       306 ~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd  385 (504)
                      .............  .+..++.++.++.+..+|..+++......................  .+..+++++.+|.|..+|
T Consensus       129 ~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d  204 (376)
T 3q7m_A          129 TKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVL  204 (376)
T ss_dssp             EECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEE
T ss_pred             EeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEE
Confidence            3322211111112  245788889999999999999988877653211000000011111  144677888899999999


Q ss_pred             cCCCceeeeeeCCCCC----eE---EEEEcC--CCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          386 VKSQANVAKFDGHVGA----VT---AISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       386 ~~~~~~~~~~~~~~~~----i~---~l~~s~--~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      ..+++.+..+......    +.   .+.-.|  .+..++.++.++ +..+|..+++.+......    ....+..  ++.
T Consensus       205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~~--~~~  278 (376)
T 3q7m_A          205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----SVNDFIV--DGN  278 (376)
T ss_dssp             TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----CEEEEEE--ETT
T ss_pred             CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----CCCCceE--ECC
Confidence            9999887666532100    00   011111  245566666666 999999999877665432    3444444  355


Q ss_pred             EEEEEeCc--EEEEEeec
Q 010669          456 YLAVASAD--IRVYQVAS  471 (504)
Q Consensus       456 ~l~~~~~d--i~vw~~~~  471 (504)
                      .+++++.+  +..+|..+
T Consensus       279 ~l~~~~~~g~l~~~d~~t  296 (376)
T 3q7m_A          279 RIYLVDQNDRVMALTIDG  296 (376)
T ss_dssp             EEEEEETTCCEEEEETTT
T ss_pred             EEEEEcCCCeEEEEECCC
Confidence            66666655  77777633

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.87  E-value=1.1e-05  Score=87.01  Aligned_cols=242  Identities=9%  Similarity=0.042  Sum_probs=158.1

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc-------CccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-------HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-------h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      ...|.++...++|.+.+ |+.+| |.+|+..++........       ....|.++...++|. |-.|+.++-|..|+..
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence            35699999998888655 44454 88899877654433211       235699998888876 4556777778889865


Q ss_pred             CCCCcceeEEec----cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC---CCCCCCeEEEEECCC
Q 010669          296 EDGNYDCKHTLK----DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT---DGRPEGYTSAAFHPD  368 (504)
Q Consensus       296 ~~~~~~~~~~~~----~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~~pd  368 (504)
                      .. .+.......    .....|.++...++|+ |..|+.++-|..||..++...........   ......|.++...++
T Consensus       339 ~~-~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~  416 (795)
T 4a2l_A          339 RN-RFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK  416 (795)
T ss_dssp             GG-SSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred             cc-cceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence            52 111111100    1235699999887776 45577787899999887765433211100   012356899999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeee----CCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeec----CC
Q 010669          369 GLILGTGTSEALVKIWDVKSQANVAKFD----GHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES----SD  440 (504)
Q Consensus       369 g~~l~~g~~dg~I~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~----~~  440 (504)
                      |.+|.+|+.++-|.+||..+++......    .....|.++...++|.+.+... +|+.+||..+++.......    ..
T Consensus       417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~  495 (795)
T 4a2l_A          417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPV  495 (795)
T ss_dssp             TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBC
T ss_pred             CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEcccccccccc
Confidence            9866677777779999988765432211    1345799999988888666554 7799999877654322111    11


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCcEEEEEee
Q 010669          441 SETPTNSVDFDHSGSYLAVASADIRVYQVA  470 (504)
Q Consensus       441 ~~~~v~~i~~~~~g~~l~~~~~di~vw~~~  470 (504)
                      ....|.++..+++|.+.+.....+..|+..
T Consensus       496 ~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~  525 (795)
T 4a2l_A          496 VSKQITTLFRDSHKRLWIGGEEGLSVFKQE  525 (795)
T ss_dssp             CCCCEEEEEECTTCCEEEEESSCEEEEEEE
T ss_pred             CCceEEEEEECCCCCEEEEeCCceEEEeCC
Confidence            135789999999998877666338888873

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.84  E-value=4.9e-07  Score=81.86  Aligned_cols=188  Identities=13%  Similarity=0.053  Sum_probs=129.0

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCCcc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ..-...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ - ..........++++ +.+..-.++.+.+||..+.   +
T Consensus        54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl---~  127 (268)
T 3nok_A           54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP---Q  127 (268)
T ss_dssp             TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT---E
T ss_pred             ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC---c
Confidence            3445678887 4667788888899999999999987776 2 23333322333444 4444557889999999875   5


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV  381 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I  381 (504)
                      .+.++... ..-+.++  ++++.|+.+..++.|.++|..+.+....+........-..++.+.|. +|.+++..-.++.|
T Consensus       128 ~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I  203 (268)
T 3nok_A          128 RERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDV  203 (268)
T ss_dssp             EEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred             EEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeE
Confidence            66666532 2224444  46788888777899999999999888877632111111245667777 77777666678899


Q ss_pred             EEEEcCCCceeeeeeCC-------------CCCeEEEEEcCCCcEEEEEeCC
Q 010669          382 KIWDVKSQANVAKFDGH-------------VGAVTAISFSENGYYLATAAHD  420 (504)
Q Consensus       382 ~iwd~~~~~~~~~~~~~-------------~~~i~~l~~s~~g~~l~s~~~d  420 (504)
                      .+.|.++++.+..+.-.             ....+.|+|+|++..|++.+..
T Consensus       204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            99999999988776521             1367899999976655555543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.83  E-value=1.1e-05  Score=87.08  Aligned_cols=265  Identities=8%  Similarity=0.018  Sum_probs=166.5

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc------cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS------GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~------~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ...|.++...++|.+- .|+.++-|..|+..++.......      -....|.++...++|. |-.|+.++-|..|+..+
T Consensus       309 ~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~  386 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT  386 (795)
T ss_dssp             SSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred             CCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence            3579999999888754 46666678888876554322111      1234689998887776 45577777799998776


Q ss_pred             CCCcceeEEec--------cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669          297 DGNYDCKHTLK--------DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       297 ~~~~~~~~~~~--------~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd  368 (504)
                      +   .......        .....|.++...++++.|..|+.++.+..||..+++........ .......|.++...++
T Consensus       387 ~---~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~-~~l~~~~v~~i~~d~~  462 (795)
T 4a2l_A          387 Q---RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN-SQLVNENVYAILPDGE  462 (795)
T ss_dssp             C---CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTT-SCCSCSCEEEEEECSS
T ss_pred             C---cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC-CCcCCCeeEEEEECCC
Confidence            3   1111110        12357899998888885777888888999999887654332111 1123457899999998


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeeC------CCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeec---C
Q 010669          369 GLILGTGTSEALVKIWDVKSQANVAKFDG------HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES---S  439 (504)
Q Consensus       369 g~~l~~g~~dg~I~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~---~  439 (504)
                      |.+.+.. .+ -|.+||..+++.......      ....|.++...++|.+.+... +||..||..+.+.  .+..   .
T Consensus       463 g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~  537 (795)
T 4a2l_A          463 GNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPV  537 (795)
T ss_dssp             SCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCS
T ss_pred             CCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCC
Confidence            8866554 44 488899877644322111      235799999999998766555 7799999876654  2221   0


Q ss_pred             --CCCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          440 --DSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       440 --~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                        .....|.++..+++|.+.++....+..|+...  ..........+. ....|.++...++|.
T Consensus       538 ~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~d~~~--~~~~~~~~~~gl-~~~~i~~i~~d~~g~  598 (795)
T 4a2l_A          538 SNVTKLFTNCIYEASNGIIWVGTREGFYCFNEKD--KQIKRYNTTNGL-PNNVVYGILEDSFGR  598 (795)
T ss_dssp             CGGGGSCEEEEEECTTSCEEEEESSCEEEEETTT--TEEEEECGGGTC-SCSCEEEEEECTTSC
T ss_pred             CCCCCCeeEEEEECCCCCEEEEeCCCceeECCCC--CcEEEeCCCCCC-chhheEEEEECCCCC
Confidence              11346899999999987665544477777521  222222222222 123566666665554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.81  E-value=1e-05  Score=76.41  Aligned_cols=229  Identities=14%  Similarity=0.091  Sum_probs=137.6

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCCcce
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDC  302 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~~  302 (504)
                      ....++|+++++++++-..++.|..||... .....+. ....+..+++.++++++++....+  .|..+|..++ ....
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g-~~~~  109 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG-TVET  109 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS-CEEE
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC-eEEE
Confidence            467899999999877777889999999765 3333333 234688999999998666554332  3666665553 2222


Q ss_pred             eEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE-EEEeecC----CCCCCCCCeEEEEECCCCCEEEE-Ee
Q 010669          303 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-LTQVSDA----GTDGRPEGYTSAAFHPDGLILGT-GT  376 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~----~~~~~~~~v~~~~~~pdg~~l~~-g~  376 (504)
                      +..+. .......++..+++..+++-..++.|.++|..++.. +......    .....-.....+  ++++..|++ -.
T Consensus       110 ~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~  186 (306)
T 2p4o_A          110 LLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT  186 (306)
T ss_dssp             EEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred             EEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence            22221 222345555555554455544688999999876532 2111100    000111234445  788765554 45


Q ss_pred             CCCcEEEEEcCC-Cce--eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCccee--eeecCCCCCCeeEEEE
Q 010669          377 SEALVKIWDVKS-QAN--VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR--SFESSDSETPTNSVDF  450 (504)
Q Consensus       377 ~dg~I~iwd~~~-~~~--~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~--~~~~~~~~~~v~~i~~  450 (504)
                      ..+.|..||+.. ++.  ...+. .......++++++|+++++....+ |.+||.. ++...  .+...  ....++++|
T Consensus       187 ~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~--~~~p~~~a~  262 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG--VIGSTAVAF  262 (306)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT--CTTEEEEEE
T ss_pred             CCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc--cCCceEEEE
Confidence            678999999864 321  11221 113467789999998766655555 9999975 54422  23222  356899999


Q ss_pred             C---CCCCEEEEEeCc
Q 010669          451 D---HSGSYLAVASAD  463 (504)
Q Consensus       451 ~---~~g~~l~~~~~d  463 (504)
                      .   |++..|++++..
T Consensus       263 ~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          263 GQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CCSTTTTTEEEEEECT
T ss_pred             ecccCCCCEEEEECCC
Confidence            8   888887776543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.80  E-value=8.4e-07  Score=93.50  Aligned_cols=240  Identities=13%  Similarity=0.145  Sum_probs=152.7

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCc----cceeEEEEeeCCCEEEEEeC------CCcEEEEeCCCCCCcceeE
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHS----KKVTSVKFVTEGDLFLTGSA------DKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~  304 (504)
                      +..+++++.|+.|+.+|..+|+.+..+....    ..+.+--...++ .++++..      +|.|..||..++.   .+-
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~---~~W  192 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGK---LAW  192 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCC---EEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCc---EEE
Confidence            5678888899999999999999887765421    111111011144 4555433      5899999998863   333


Q ss_pred             Eecc---C----------------------------CcCeEEEEEccCCCEEEEEeCCC-------------------eE
Q 010669          305 TLKD---H----------------------------TAEVQAVTVHATNKYFVTASLDN-------------------TW  334 (504)
Q Consensus       305 ~~~~---h----------------------------~~~v~~l~~~p~~~~l~s~s~dg-------------------~i  334 (504)
                      .+..   .                            ......+++.|+...++.++.++                   .|
T Consensus       193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v  272 (668)
T 1kv9_A          193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI  272 (668)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence            2221   0                            01112467888888888888776                   39


Q ss_pred             EEEECCCCeEEEEeecCCCCC----CCCCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCceeeeeeCCC--------
Q 010669          335 CFYDLSSGICLTQVSDAGTDG----RPEGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANVAKFDGHV--------  399 (504)
Q Consensus       335 ~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~pdg~---~l~~g~~dg~I~iwd~~~~~~~~~~~~~~--------  399 (504)
                      ..+|.++|+.+..+.......    ...+.....+..+|+   .++.++.+|.++++|..+++.+..+....        
T Consensus       273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d  352 (668)
T 1kv9_A          273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD  352 (668)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred             EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence            999999999888776321111    012333333334665   68899999999999999998874332111        


Q ss_pred             ---C-C------------------------eEEEEEcCCCcEEEEEe---------------------------------
Q 010669          400 ---G-A------------------------VTAISFSENGYYLATAA---------------------------------  418 (504)
Q Consensus       400 ---~-~------------------------i~~l~~s~~g~~l~s~~---------------------------------  418 (504)
                         + +                        -..++++|+..+++...                                 
T Consensus       353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p  432 (668)
T 1kv9_A          353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP  432 (668)
T ss_dssp             TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred             cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence               0 0                        01267777766555421                                 


Q ss_pred             ---CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCC
Q 010669          419 ---HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       419 ---~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                         .++ |..||+.+++.+......   .......+...+.++++++.+  +++||.    ++++.+..+...
T Consensus       433 ~~~~~g~l~A~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~----~tG~~l~~~~~~  498 (668)
T 1kv9_A          433 AAVVSGALLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSA----DKGEALWQFEAQ  498 (668)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEET----TTCCEEEEEECS
T ss_pred             CCCccceEEEEeCCCCcEEEEccCC---CCCcCceeEeCCCEEEEECCcccchhhhh----hcChhheEecCC
Confidence               225 999999999987777653   233333445578888888877  888887    667777766543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.77  E-value=3.5e-06  Score=75.63  Aligned_cols=188  Identities=12%  Similarity=0.016  Sum_probs=127.6

Q ss_pred             CCeEEEEeccCCCEEEEEeCCC--cEEEEcCCCCceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCCc
Q 010669          224 PGIVSLDIHYSKDVIATGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNY  300 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~  300 (504)
                      .-...+.|+. +.++.+.+.+|  .|+++|+.+++.+..+.-... .........++ +.+..-.++.+.+||..+.   
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl---   95 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATL---   95 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTT---
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcC---
Confidence            4566888886 56666666654  899999999999888764332 33332333344 4445557899999999875   


Q ss_pred             ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010669          301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL  380 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~  380 (504)
                      +.+.++... ..-..++  +++..|+.+..++.|.++|..+.+....+........-..++.+.|. +|.+++..-.+..
T Consensus        96 ~~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~  171 (243)
T 3mbr_X           96 TPRARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR  171 (243)
T ss_dssp             EEEEEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred             cEEEEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe
Confidence            666666532 2224454  46777777777889999999999888777632110111234566665 7777766667889


Q ss_pred             EEEEEcCCCceeeeeeCC-------------CCCeEEEEEcCCCcEEEEEeCC
Q 010669          381 VKIWDVKSQANVAKFDGH-------------VGAVTAISFSENGYYLATAAHD  420 (504)
Q Consensus       381 I~iwd~~~~~~~~~~~~~-------------~~~i~~l~~s~~g~~l~s~~~d  420 (504)
                      |.+.|.++++.+..+.-.             ....+.|+|+|++..|++.+..
T Consensus       172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            999999999988776521             1356899999987777666654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.76  E-value=4e-05  Score=73.87  Aligned_cols=256  Identities=8%  Similarity=-0.037  Sum_probs=147.7

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCCcce
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      +..+|.+..+++ +|+.+. ...|+..++........+.. ...+..++|++.+..|+ +-...+.|..+++....   .
T Consensus        34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~  107 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---V  107 (349)
T ss_dssp             TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---C
T ss_pred             CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCC---c
Confidence            345676666643 444443 34588888876554444443 34588999997555544 54567889999887642   2


Q ss_pred             eEEeccCCcCeEEEEEccCCCE-EEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC-CEEEEEeCC-C
Q 010669          303 KHTLKDHTAEVQAVTVHATNKY-FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSE-A  379 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg-~~l~~g~~d-g  379 (504)
                      ...+.........+++.+.+.. +++-...+.|.+.++........+.     ..-.....++++|.+ .++++-... +
T Consensus       108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-----~~l~~P~~iavdp~~g~ly~td~~~~~  182 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-----QSLEKPRAIALHPMEGTIYWTDWGNTP  182 (349)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----TTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred             eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-----CCCCCcceEEEecCcCeEEEeccCCCC
Confidence            2222222234578888875554 4555557889999987654333222     112457899999954 455554455 7


Q ss_pred             cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEE
Q 010669          380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL  457 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l  457 (504)
                      .|..+++............-...+.|+|++++..|+.+... + |..+|+.... ...+.... ......+++.  +..|
T Consensus       183 ~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~~~~~~-~~~P~giav~--~~~l  258 (349)
T 3v64_C          183 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQG-LPHPFAITVF--EDSL  258 (349)
T ss_dssp             EEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSS-CSSEEEEEEE--TTEE
T ss_pred             EEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEEEEeCC-CCCceEEEEE--CCEE
Confidence            89999886433222222233467899999877777766655 4 9999986433 23222211 3456788883  3455


Q ss_pred             EEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          458 AVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       458 ~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      +.+... -+|+.++.  .+++.+..+...  .....++.++.
T Consensus       259 y~td~~~~~V~~~~~--~~G~~~~~i~~~--~~~p~gi~v~~  296 (349)
T 3v64_C          259 YWTDWHTKSINSANK--FTGKNQEIIRNK--LHFPMDIHTLH  296 (349)
T ss_dssp             EEEETTTTEEEEEET--TTCCSCEEEECS--CSCCCCEEEEC
T ss_pred             EEecCCCCeEEEEEc--cCCCccEEeccC--CCCCceEEEEc
Confidence            555544 44444432  233333333322  33455665553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.75  E-value=3.4e-06  Score=90.22  Aligned_cols=195  Identities=9%  Similarity=0.009  Sum_probs=115.2

Q ss_pred             CeEEEEec-cCCCEEEEEeC-CC----cEEEEcCCCC-ceEEEcccCccceeEEEEeeCCCEEEEEeCC-----CcEEEE
Q 010669          225 GIVSLDIH-YSKDVIATGGV-DT----NAVLFDRPSG-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRVW  292 (504)
Q Consensus       225 ~I~~~~~s-~~~~~l~sg~~-dg----~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d-----g~i~iw  292 (504)
                      .+....|| |||++|+.+.. +|    .|+++|+.++ +.+..  .-......+.|+|||+.|+....|     ..|.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            57889999 99998875543 23    4999999988 63211  001123578999999877766654     257778


Q ss_pred             eCCCCCCcceeEEec-cCCcCeEEEEEccCCCEEEEEeC---CCeEEEEECCCCe-EE--EEeecCCCCCCCCCeEEEEE
Q 010669          293 QGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASL---DNTWCFYDLSSGI-CL--TQVSDAGTDGRPEGYTSAAF  365 (504)
Q Consensus       293 d~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~---dg~i~iwd~~~~~-~~--~~~~~~~~~~~~~~v~~~~~  365 (504)
                      ++.++.. .....+. ........+.|+|||++|+..+.   ...|.++|+.++. ..  ..+..    ........+.|
T Consensus       253 ~lgt~~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~----~~~~~~~s~~~  327 (751)
T 2xe4_A          253 VMGKLQS-EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP----REKGVRYDVQM  327 (751)
T ss_dssp             ETTSCGG-GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC----CCTTCCEEEEE
T ss_pred             ECCCCch-hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec----CCCCceEEEee
Confidence            8766421 1122222 22345678899999998887653   3468889998752 12  23321    22234556666


Q ss_pred             CCCCCEEEEEeCC----CcEEEEEcCCCceeee-eeCCCC--CeEEEEEcCCCcEEEEEeCCc---EEEEEc
Q 010669          366 HPDGLILGTGTSE----ALVKIWDVKSQANVAK-FDGHVG--AVTAISFSENGYYLATAAHDG---VKLWDL  427 (504)
Q Consensus       366 ~pdg~~l~~g~~d----g~I~iwd~~~~~~~~~-~~~~~~--~i~~l~~s~~g~~l~s~~~d~---v~vwd~  427 (504)
                      +.++.+++....+    ..|..+|+.++..... +..+..  .+..+.+. .+.++++...++   |.++|+
T Consensus       328 ~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          328 HGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             ETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             eeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            5555555555443    3677777764322222 333333  45566665 344555566664   777786

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.70  E-value=1.4e-05  Score=75.45  Aligned_cols=224  Identities=11%  Similarity=0.043  Sum_probs=134.1

Q ss_pred             ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC--Ce
Q 010669          256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD--NT  333 (504)
Q Consensus       256 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d--g~  333 (504)
                      +.+..+... .....++|+++++++++-..++.|..||....    ....+. ......++++.++++++++....  ..
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~----~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~   96 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN----QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIP   96 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC----EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc----eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcce
Confidence            344445322 45778999999987777668899999987652    222222 23468899999999966655432  24


Q ss_pred             EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce-eeee---------eCCCCCeE
Q 010669          334 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN-VAKF---------DGHVGAVT  403 (504)
Q Consensus       334 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~-~~~~---------~~~~~~i~  403 (504)
                      |..+|..+++........    .......++..+++..+++-..+|.|+++|...++. +...         ...-...+
T Consensus        97 v~~~d~~~g~~~~~~~~~----~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn  172 (306)
T 2p4o_A           97 VVSLVKSDGTVETLLTLP----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  172 (306)
T ss_dssp             EEEEECTTSCEEEEEECT----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             EEEEcCCCCeEEEEEeCC----CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence            777787777654333211    112234556666666566555689999999865421 2110         01112355


Q ss_pred             EEEEcCCCcEEEEEeCC-c-EEEEEcCC-Ccc--eeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccc
Q 010669          404 AISFSENGYYLATAAHD-G-VKLWDLRK-LKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW  476 (504)
Q Consensus       404 ~l~~s~~g~~l~s~~~d-~-v~vwd~~~-~~~--~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~  476 (504)
                      .+  ++++.+|+.+... + |..||+.. +..  ...+..   ......++++++|++.++....  |.+|+.     .+
T Consensus       173 gi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~-----~G  242 (306)
T 2p4o_A          173 GL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAP-----DR  242 (306)
T ss_dssp             EE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECT-----TC
T ss_pred             Cc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECC-----CC
Confidence            56  7788777766654 4 99999874 321  112211   1346779999999876655433  777663     24


Q ss_pred             ee--EEEccCCCCCCceeEEEEe---ecCc
Q 010669          477 NC--IKTFPDLSGTGAASFLFLF---VLGQ  501 (504)
Q Consensus       477 ~~--i~~~~~h~~~~~v~~l~~~---~~g~  501 (504)
                      +.  +..+...  ....++++|.   +++.
T Consensus       243 ~~~~~~~~~~~--~~~p~~~a~~g~~~d~~  270 (306)
T 2p4o_A          243 STTIIAQAEQG--VIGSTAVAFGQTEGDCT  270 (306)
T ss_dssp             CEEEEECGGGT--CTTEEEEEECCSTTTTT
T ss_pred             CEEEEeecccc--cCCceEEEEecccCCCC
Confidence            33  3334321  3567888887   6754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.69  E-value=5.6e-05  Score=72.13  Aligned_cols=262  Identities=9%  Similarity=0.081  Sum_probs=146.9

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc----cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ...+.+|.|.+++..+++ +..|.|. .....|+.-..+.    .....+.++.|.+ +..+ .++.+|.|.. ..+.+.
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~-~~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGW-IVGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEE-EEEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEE-EEECCCeEEE-ECCCCC
Confidence            347999999887777775 4567653 3334444333322    1244688999875 4444 4455665433 333344


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                      .+........+.+.+..+.+.+++..++.+ .+|.|.. ..+.++.......    .....+..+.+.+++.+++++...
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~G  183 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSRG  183 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETTS
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECCC
Confidence            444433222234557788887777666555 4555432 2233443333331    223468899999999888777554


Q ss_pred             CcEEEEEc--CCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC--CCCCCeeEEEECCC
Q 010669          379 ALVKIWDV--KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS--DSETPTNSVDFDHS  453 (504)
Q Consensus       379 g~I~iwd~--~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~--~~~~~v~~i~~~~~  453 (504)
                      +..+-+|-  .+.+.+.  ......+..+.+.+++.+++.+ .++ +++.+...++....+...  .....+..+.+.++
T Consensus       184 ~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~  260 (327)
T 2xbg_A          184 SFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP  260 (327)
T ss_dssp             SEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred             cEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence            44444442  2223332  2345678899999998876655 455 766643334433333221  11235889999998


Q ss_pred             CCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          454 GSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       454 g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      +.+++++... .+|.-....++|..+.....+  ...+.++.|..+++
T Consensus       261 ~~~~~~g~~g-~i~~S~DgG~tW~~~~~~~~~--~~~~~~v~~~~~~~  305 (327)
T 2xbg_A          261 NEVWLAGGAG-ALLCSQDGGQTWQQDVDVKKV--PSNFYKILFFSPDQ  305 (327)
T ss_dssp             SCEEEEESTT-CEEEESSTTSSCEECGGGTTS--SSCCCEEEEEETTE
T ss_pred             CEEEEEeCCC-eEEEeCCCCcccEEcCccCCC--CCCeEEEEEECCCc
Confidence            8887776654 223333334678766543232  34567777765543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.69  E-value=6.3e-06  Score=78.54  Aligned_cols=225  Identities=11%  Similarity=0.068  Sum_probs=134.0

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec-----------------cCCcCeEEEEEccCCCEEEEEe
Q 010669          267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-----------------DHTAEVQAVTVHATNKYFVTAS  329 (504)
Q Consensus       267 ~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----------------~h~~~v~~l~~~p~~~~l~s~s  329 (504)
                      ...+++|.+++++++++..++.|..|+..+.. ........                 .....+.++++.+++..|+.+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            45678899998878888889999999876531 11111000                 0113578999997334455565


Q ss_pred             CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeC-----------------CCcEEEEEcCCCce
Q 010669          330 LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTS-----------------EALVKIWDVKSQAN  391 (504)
Q Consensus       330 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~-----------------dg~I~iwd~~~~~~  391 (504)
                      ..+.|..+|..++... .+..............+++.+ +|+++++-..                 +|.|..||..+++.
T Consensus        99 ~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             TTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             CCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            5566888887765422 221100001113468899999 9987776432                 36788899876654


Q ss_pred             eeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCc--ceeeeecCCCCCCeeEEEECCCCCEEEEEeC-----
Q 010669          392 VAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLK--NFRSFESSDSETPTNSVDFDHSGSYLAVASA-----  462 (504)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~--~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~-----  462 (504)
                      ..... .......|+|+++|.+|+.+... + |.+|++....  ....+...  .. ...++++++|++.++...     
T Consensus       178 ~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~--~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          178 TLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI--PN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC--SS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC--CC-CCCeEECCCCCEEEEecCccccc
Confidence            32222 22345789999999877666443 4 9999987532  11222211  23 788999999987776644     


Q ss_pred             -----cEEEEEeeccCccceeEEEccCCCC--CCceeEEEEeecCc
Q 010669          463 -----DIRVYQVASVKADWNCIKTFPDLSG--TGAASFLFLFVLGQ  501 (504)
Q Consensus       463 -----di~vw~~~~~~~~~~~i~~~~~h~~--~~~v~~l~~~~~g~  501 (504)
                           ..+|+.++   ..++.+..+....+  ...++++.+ .+|+
T Consensus       254 ~~~~~~~~v~~~d---~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~  295 (322)
T 2fp8_A          254 MHGRVDPKGIKFD---EFGNILEVIPLPPPFAGEHFEQIQE-HDGL  295 (322)
T ss_dssp             TTSCEEEEEEEEC---TTSCEEEEEECCTTTTTSCCCEEEE-ETTE
T ss_pred             ccCCCccEEEEEC---CCCCEEEEEECCCCCccccceEEEE-eCCE
Confidence                 34555553   34566666644311  134555554 3443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.67  E-value=7.4e-07  Score=93.94  Aligned_cols=263  Identities=13%  Similarity=0.079  Sum_probs=149.1

Q ss_pred             EEEecc-CCCEEEEEeCCC-----------cEEEEcCCCCce--EEEcc-cCccceeEEEEeeCCCEEEEEeC-CCcEEE
Q 010669          228 SLDIHY-SKDVIATGGVDT-----------NAVLFDRPSGQI--VTTLS-GHSKKVTSVKFVTEGDLFLTGSA-DKTVRV  291 (504)
Q Consensus       228 ~~~~s~-~~~~l~sg~~dg-----------~i~vwd~~~~~~--~~~~~-~h~~~v~~l~~s~~~~~l~s~s~-dg~i~i  291 (504)
                      ++++.+ ++++++.|+.++           .+.+||..+++.  +..+. .+.....++++..++.+++.|+. ++.+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456666 888888887543           588999887653  22221 23333445777789999999884 558999


Q ss_pred             EeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEe-CC-----CeEEEEECCCCeEEEEe----ecCCCCCCCCCeE
Q 010669          292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LD-----NTWCFYDLSSGICLTQV----SDAGTDGRPEGYT  361 (504)
Q Consensus       292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~d-----g~i~iwd~~~~~~~~~~----~~~~~~~~~~~v~  361 (504)
                      ||..+. .+.....+... ..-.++...++++.++.|+ .+     ..+.+||..++.-...-    .......+     
T Consensus       270 yd~~t~-~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-----  342 (656)
T 1k3i_A          270 YDSSSD-SWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-----  342 (656)
T ss_dssp             EEGGGT-EEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-----
T ss_pred             ecCcCC-ceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc-----
Confidence            998763 33333222211 1123455667899999988 44     46999999887644321    00000000     


Q ss_pred             EEEECCCCCEEEEEeCCC---------cEEEEEcCCCceeeeeeCCC---------CCeEEEEEcC-CCcEEEEEeCC--
Q 010669          362 SAAFHPDGLILGTGTSEA---------LVKIWDVKSQANVAKFDGHV---------GAVTAISFSE-NGYYLATAAHD--  420 (504)
Q Consensus       362 ~~~~~pdg~~l~~g~~dg---------~I~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~-~g~~l~s~~~d--  420 (504)
                      ...+..++.+++.|+.+|         .+..||..+..-......+.         ..-.++.|.. ++++++.|+.+  
T Consensus       343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~  422 (656)
T 1k3i_A          343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY  422 (656)
T ss_dssp             TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred             cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence            012234556666665544         46788887665332222111         1234455543 77888887732  


Q ss_pred             ----------cEEEEEcCCCcceeee--ecCCCCCCeeEEEECCCCCEEEEEeC------------c-EEEEEeeccCcc
Q 010669          421 ----------GVKLWDLRKLKNFRSF--ESSDSETPTNSVDFDHSGSYLAVASA------------D-IRVYQVASVKAD  475 (504)
Q Consensus       421 ----------~v~vwd~~~~~~~~~~--~~~~~~~~v~~i~~~~~g~~l~~~~~------------d-i~vw~~~~~~~~  475 (504)
                                .|.+||..+..-....  ..+. ...-.+++..|+|+++++||.            . +.+||...  ..
T Consensus       423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~-~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t--~~  499 (656)
T 1k3i_A          423 QDSDATTNAHIITLGEPGTSPNTVFASNGLYF-ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ--DT  499 (656)
T ss_dssp             SSSBCCCCEEEEECCSTTSCCEEEECTTCCSS-CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG--TE
T ss_pred             CCCCcCCcceEEEcCCCCCCCeeEEccCCCCC-CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC--Cc
Confidence                      2667787665433222  1111 122345567789999999873            1 77888644  56


Q ss_pred             ceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          476 WNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       476 ~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      |..+..+...  -....+..+.++|++
T Consensus       500 W~~~~~~~~~--R~~hs~a~ll~dg~v  524 (656)
T 1k3i_A          500 FYKQNPNSIV--RVYHSISLLLPDGRV  524 (656)
T ss_dssp             EEECCCCSSC--CCTTEEEEECTTSCE
T ss_pred             eeecCCCCCc--cccccHhhcCCCcEE
Confidence            8776654332  112233344566654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.67  E-value=5.2e-06  Score=85.65  Aligned_cols=238  Identities=14%  Similarity=0.079  Sum_probs=146.4

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCc--c--ceeEEEEeeCCCEEEEEeC------CCcEEEEeCCCCCCcceeE
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHS--K--KVTSVKFVTEGDLFLTGSA------DKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~--~v~~l~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~  304 (504)
                      +..+++++.|+.+..+|..+|+.+..+....  .  .+.+--...++ .+++++.      +|.|..+|..++.   .+-
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~---~~W  190 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGE---LKW  190 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCC---EEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCc---EEE
Confidence            5677888889999999999999887654221  0  12211011144 4555554      7899999998863   332


Q ss_pred             EeccCCc-------------------------------------Ce-EEEEEccCCCEEEEEeCC---------------
Q 010669          305 TLKDHTA-------------------------------------EV-QAVTVHATNKYFVTASLD---------------  331 (504)
Q Consensus       305 ~~~~h~~-------------------------------------~v-~~l~~~p~~~~l~s~s~d---------------  331 (504)
                      .+.....                                     .+ ..+++.+....++.++.+               
T Consensus       191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y  270 (571)
T 2ad6_A          191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence            2221100                                     00 135566666677666532               


Q ss_pred             -CeEEEEECCCCeEEEEeecCCCC-----CCCCCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCceeeeeeCCC---
Q 010669          332 -NTWCFYDLSSGICLTQVSDAGTD-----GRPEGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANVAKFDGHV---  399 (504)
Q Consensus       332 -g~i~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~pdg~---~l~~g~~dg~I~iwd~~~~~~~~~~~~~~---  399 (504)
                       +.|..+|.++++.+..+......     ....++ -+....+|+   .++.++.+|.++++|..+++.+..+....   
T Consensus       271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~  349 (571)
T 2ad6_A          271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN  349 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             EEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcc
Confidence             36999999999988777532110     111222 233334774   67788999999999999998876654211   


Q ss_pred             ----------CCe--------------------------EEEEEcCCCcEEEEEe-------------------------
Q 010669          400 ----------GAV--------------------------TAISFSENGYYLATAA-------------------------  418 (504)
Q Consensus       400 ----------~~i--------------------------~~l~~s~~g~~l~s~~-------------------------  418 (504)
                                .++                          ..++|+|++.+|++..                         
T Consensus       350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  429 (571)
T 2ad6_A          350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence                      111                          2357888766666653                         


Q ss_pred             ------------CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEcc
Q 010669          419 ------------HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP  483 (504)
Q Consensus       419 ------------~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~  483 (504)
                                  .++ |..||+.+++...++....   .+....+...+..+++++.|  +++||.    ++++.+-.+.
T Consensus       430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~---~~~~~~~~t~gg~v~~g~~dg~l~a~D~----~tG~~lw~~~  502 (571)
T 2ad6_A          430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDN----KDGKELWNFK  502 (571)
T ss_dssp             EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEET----TTCCEEEEEE
T ss_pred             eeccCccccCCCCCCeEEEEECCCCCEEEEecCCC---CccceeEEECCCEEEEEcCCCeEEEEEC----CCCCEEEEEe
Confidence                        235 9999999998877776532   22222233356677778777  888887    5677776665


Q ss_pred             C
Q 010669          484 D  484 (504)
Q Consensus       484 ~  484 (504)
                      .
T Consensus       503 ~  503 (571)
T 2ad6_A          503 M  503 (571)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.66  E-value=0.00021  Score=67.72  Aligned_cols=221  Identities=8%  Similarity=-0.023  Sum_probs=129.6

Q ss_pred             EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCE-EEEEeCCCcEEEEeCCCCCC-cceeEEeccCCcCeE
Q 010669          237 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQ  314 (504)
Q Consensus       237 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~  314 (504)
                      +|+.+. ...|+..|+...+....+. ....+..++|++.+.. +++-..++.|..+++..... ......+...-....
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            344443 3468888988776655544 3456789999986554 44555678999998875100 011122222223467


Q ss_pred             EEEEccCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CC-CcEEEEEcCCCce
Q 010669          315 AVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SE-ALVKIWDVKSQAN  391 (504)
Q Consensus       315 ~l~~~p~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~d-g~I~iwd~~~~~~  391 (504)
                      ++++.+.+. .+++-...+.|.++|+........+.     ........++++|.+..|+... .. +.|..+++. +..
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-----~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~  154 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVD  154 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCC
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-----CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCC
Confidence            888887555 44555667899999987654333332     1123578999999555444443 33 788888874 333


Q ss_pred             eeee-eCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeec-CCCCCCeeEEEECCCCCEEEEEeCc---E
Q 010669          392 VAKF-DGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD---I  464 (504)
Q Consensus       392 ~~~~-~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~-~~~~~~v~~i~~~~~g~~l~~~~~d---i  464 (504)
                      ...+ ...-...+.|+|++++..|+.+... + |..+|+.. .....+.. .........++++  +..|+.....   |
T Consensus       155 ~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V  231 (316)
T 1ijq_A          155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAI  231 (316)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeE
Confidence            3333 2233568899999987777776655 4 99999874 33333322 1112456788885  3455555443   5


Q ss_pred             EEEE
Q 010669          465 RVYQ  468 (504)
Q Consensus       465 ~vw~  468 (504)
                      ..++
T Consensus       232 ~~~~  235 (316)
T 1ijq_A          232 FSAN  235 (316)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5554

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.66  E-value=2.2e-08  Score=76.23  Aligned_cols=51  Identities=20%  Similarity=0.385  Sum_probs=44.2

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC--CCCCCCCCC-CCCccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG--KCPVTGEPL-TMDDIV   51 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~-~~~~~~   51 (504)
                      +.|+|+.+++.+||+.|.+||+|++.+|++|+..++  +||++++++ ..++|.
T Consensus        14 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~   67 (92)
T 3ztg_A           14 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALI   67 (92)
T ss_dssp             TEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCE
T ss_pred             CCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccC
Confidence            469999999999999966899999999999999776  799999987 444543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.66  E-value=5.2e-05  Score=74.16  Aligned_cols=255  Identities=8%  Similarity=-0.033  Sum_probs=145.5

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCE-EEEEeCCCcEEEEeCCCCCCccee
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~  303 (504)
                      .-.|.+..+ ..+|+.+. ...|+.+++........+.. ...+..++|++.+.. +++-...+.|..+++...   ...
T Consensus        78 ~~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~---~~~  151 (386)
T 3v65_B           78 RRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGS---NVE  151 (386)
T ss_dssp             SSCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---CEE
T ss_pred             CCeECCccc-cceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC---CcE
Confidence            344555555 33444443 35688888876655444443 345889999975554 445556788999988764   222


Q ss_pred             EEeccCCcCeEEEEEccCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE-EEeCC-Cc
Q 010669          304 HTLKDHTAEVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSE-AL  380 (504)
Q Consensus       304 ~~~~~h~~~v~~l~~~p~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~-~g~~d-g~  380 (504)
                      ..+.........+++.+.+..| ++-...+.|.+.++........+.     ........++++|.+..|+ +-... +.
T Consensus       152 ~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-----~~l~~P~giavdp~~g~ly~td~~~~~~  226 (386)
T 3v65_B          152 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-----QSLEKPRAIALHPMEGTIYWTDWGNTPR  226 (386)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-----SSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred             EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-----CCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence            2222222345678888755544 455557789999887554333222     1124578999998655444 44444 78


Q ss_pred             EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEE
Q 010669          381 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA  458 (504)
Q Consensus       381 I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~  458 (504)
                      |..+++............-...+.|+|+|++..|+.+... + |..+|+..... ..+.... ......++++  +..|+
T Consensus       227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~-~~~P~giav~--~~~ly  302 (386)
T 3v65_B          227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQG-LPHPFAITVF--EDSLY  302 (386)
T ss_dssp             EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSS-CSSEEEEEEE--TTEEE
T ss_pred             EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECC-CCCceEEEEE--CCEEE
Confidence            8888886443332223333467899999877777666655 4 99999864332 3232211 3456788883  33455


Q ss_pred             EEeCc-EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          459 VASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       459 ~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      .+... -+|+.++.  .+++.+..+...  .....++.++.
T Consensus       303 ~td~~~~~V~~~~~--~~G~~~~~i~~~--~~~p~gi~v~~  339 (386)
T 3v65_B          303 WTDWHTKSINSANK--FTGKNQEIIRNK--LHFPMDIHTLH  339 (386)
T ss_dssp             EEETTTTEEEEEET--TTCCSCEEEECS--CSCCCCEEEES
T ss_pred             EeeCCCCeEEEEEC--CCCcceEEEccC--CCCCceEEEEc
Confidence            44443 44444422  233434444322  33455666553

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.64  E-value=3.9e-08  Score=70.93  Aligned_cols=53  Identities=19%  Similarity=0.197  Sum_probs=48.6

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+.+.+||+...+||+|.+.+|.+|++.+.+||+++++++.+++++.
T Consensus        16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A           16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred             CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence            36999999999999974599999999999999998999999999999988765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=7.8e-05  Score=80.18  Aligned_cols=266  Identities=12%  Similarity=0.046  Sum_probs=160.8

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc---------cCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS---------GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---------~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd  293 (504)
                      ...|.++...++|.+ ..|+.++-|..|+..++.......         .....|.++...++|. |..|+.++-|..||
T Consensus       312 ~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~  389 (781)
T 3v9f_A          312 NASARYIFQDSFNNI-WIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE  389 (781)
T ss_dssp             SSCEEEEEECSSCCE-EEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred             CCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence            457999999988874 456666668888877654332211         1235688888877776 44566556688898


Q ss_pred             CCCCCCcceeEE-eccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          294 GSEDGNYDCKHT-LKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       294 ~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      ..+.. ...... .......|.++...+++.+ ..|+.++.+..+|..+++...... .  ......|.++...++|.+.
T Consensus       390 ~~~~~-~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~-~--~~~~~~v~~i~~d~~g~lw  464 (781)
T 3v9f_A          390 NGKRV-AIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIEL-E--KNELLDVRVFYEDKNKKIW  464 (781)
T ss_dssp             TTEEE-EECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCS-T--TTCCCCEEEEEECTTSEEE
T ss_pred             CCCCe-EEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEecc-C--CCCCCeEEEEEECCCCCEE
Confidence            76521 111100 0123457899988877764 447777789999988775433221 1  1223578999999888755


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeCC-----CCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCC--CCCCe
Q 010669          373 GTGTSEALVKIWDVKSQANVAKFDGH-----VGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSD--SETPT  445 (504)
Q Consensus       373 ~~g~~dg~I~iwd~~~~~~~~~~~~~-----~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~--~~~~v  445 (504)
                      + |+. +-|..||..+++........     ...|.++...++|.+.+....+||..||..+.+. ..+....  ....|
T Consensus       465 i-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i  541 (781)
T 3v9f_A          465 I-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTI  541 (781)
T ss_dssp             E-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCE
T ss_pred             E-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCee
Confidence            5 444 45888998776543322211     3579999999999876655446798899876543 3332211  13568


Q ss_pred             eEEEECCCCCEEEEEeCcE-EEEEeeccCccceeEEEccCCCCCCceeEEEEeecCc
Q 010669          446 NSVDFDHSGSYLAVASADI-RVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQ  501 (504)
Q Consensus       446 ~~i~~~~~g~~l~~~~~di-~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~  501 (504)
                      .++..+++|.+.++....+ ..|+..  .........-.+. ....|.++...++|.
T Consensus       542 ~~i~~d~~g~lWi~T~~Glv~~~d~~--~~~~~~~~~~~gl-~~~~i~~i~~d~~g~  595 (781)
T 3v9f_A          542 NQIYRSSKGQMWLATGEGLVCFPSAR--NFDYQVFQRKEGL-PNTHIRAISEDKNGN  595 (781)
T ss_dssp             EEEEECTTSCEEEEETTEEEEESCTT--TCCCEEECGGGTC-SCCCCCEEEECSSSC
T ss_pred             EEEEECCCCCEEEEECCCceEEECCC--CCcEEEccccCCC-CCceEEEEEECCCCC
Confidence            9999999998776555335 666542  2223222222222 123466666655554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.62  E-value=2.3e-05  Score=71.27  Aligned_cols=201  Identities=10%  Similarity=0.139  Sum_probs=132.0

Q ss_pred             CCeEEEEeccCCCE-EEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          224 PGIVSLDIHYSKDV-IATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       224 ~~I~~~~~s~~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ..+..++|+|+++. +++...++.|...|.. ++.++.+. +-....-.|++.+++.++++.-.++.+.++++.......
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence            46999999998764 4557778899999987 88877764 222457788888888777776677889999887654211


Q ss_pred             eeEEec------cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCC---CeEEEEeecC--CCCCCCCCeEEEEECC-CC
Q 010669          302 CKHTLK------DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS---GICLTQVSDA--GTDGRPEGYTSAAFHP-DG  369 (504)
Q Consensus       302 ~~~~~~------~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~--~~~~~~~~v~~~~~~p-dg  369 (504)
                      ......      ..+.....++|+|.++.|+++.......+|.+..   ...+......  ........+..++++| .+
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg  185 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN  185 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred             eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence            112221      2345578999999998777776655545554431   1111212100  0001234578999999 66


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeCCC---------CCeEEEEEcCCCcEEEEEeCCc-EEEEEc
Q 010669          370 LILGTGTSEALVKIWDVKSQANVAKFDGHV---------GAVTAISFSENGYYLATAAHDG-VKLWDL  427 (504)
Q Consensus       370 ~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~g~~l~s~~~d~-v~vwd~  427 (504)
                      ++++....++.|.++|.. ++.+..+.-..         .....|+|.++|++.++ ++.+ ++.|.-
T Consensus       186 ~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          186 TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            777888888999999965 55554443211         26789999999985555 6666 776653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.61  E-value=0.0002  Score=70.38  Aligned_cols=247  Identities=8%  Similarity=-0.041  Sum_probs=143.1

Q ss_pred             EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCCc-ceeEEeccCCcCeE
Q 010669          237 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNY-DCKHTLKDHTAEVQ  314 (504)
Q Consensus       237 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~  314 (504)
                      +|+.+. ...|+..++........+. ....+..++|++.+..|+ +-...+.|..+++...... .....+........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444444 4678888887665544443 456688999998555554 4456788888888652110 12222232345678


Q ss_pred             EEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-C-CCcEEEEEcCCCce
Q 010669          315 AVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-S-EALVKIWDVKSQAN  391 (504)
Q Consensus       315 ~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~-dg~I~iwd~~~~~~  391 (504)
                      .+++.+.+ +++++-...+.|.+.+++.......+..     .......++++|.+..|+... . .+.|...++.....
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-----~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~  237 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  237 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-----SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-----CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence            89998744 4555555678999999986654444331     123578999999655554443 2 47899998864433


Q ss_pred             eeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEE
Q 010669          392 VAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRV  466 (504)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~v  466 (504)
                      .......-...+.|++++++..|+.+... . |..+|+....................+++.  +..|+.....   |..
T Consensus       238 ~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~  315 (400)
T 3p5b_L          238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFS  315 (400)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEE
T ss_pred             EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEE
Confidence            33333333578999999887777777655 3 999998654332222221112345677773  4445544443   555


Q ss_pred             EEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          467 YQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       467 w~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      ++.    .+++.+..+...  .....++.++.
T Consensus       316 ~~~----~~G~~~~~i~~~--~~~p~~i~v~~  341 (400)
T 3p5b_L          316 ANR----LTGSDVNLLAEN--LLSPEDMVLFH  341 (400)
T ss_dssp             EES----SSCCCCEEEECS--CSCEEEEEEES
T ss_pred             EEc----CCCCceEEEecC--CCCCceEEEEe
Confidence            553    334444444322  33455555553

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.59  E-value=5.9e-08  Score=70.37  Aligned_cols=52  Identities=19%  Similarity=0.332  Sum_probs=44.3

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC--CCCCCCCCCC-CCcccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG--KCPVTGEPLT-MDDIVP   52 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~-~~~~~~   52 (504)
                      +.|+|+.+++.+||+.|.+||+|++.+|.+|+..++  +||++++++. .+.|++
T Consensus        16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~   70 (74)
T 2yur_A           16 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSG   70 (74)
T ss_dssp             GSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTC
T ss_pred             CCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccccc
Confidence            369999999999999976999999999999999874  7999999854 444444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.59  E-value=1.5e-05  Score=82.28  Aligned_cols=235  Identities=12%  Similarity=0.047  Sum_probs=142.2

Q ss_pred             EEEEeCCCcEEEEcCCCCceEEEcccCc----cceeEEEEeeCCCEEEEEe------CCCcEEEEeCCCCCCcceeEEec
Q 010669          238 IATGGVDTNAVLFDRPSGQIVTTLSGHS----KKVTSVKFVTEGDLFLTGS------ADKTVRVWQGSEDGNYDCKHTLK  307 (504)
Q Consensus       238 l~sg~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~s~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~  307 (504)
                      |++++.|+.|..+|..+|+.+.......    ..+.+--...++ .+++++      .+|.|+.+|..++.   .+-.+.
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~---~~W~~~  199 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGE---QVWRAY  199 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCC---EEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEECCCCc---EEEEEc
Confidence            7888889999999999999877654221    012211011144 455554      37999999998863   332222


Q ss_pred             cCCc-------------------------------------Ce-EEEEEccCCCEEEEEeCC----------------Ce
Q 010669          308 DHTA-------------------------------------EV-QAVTVHATNKYFVTASLD----------------NT  333 (504)
Q Consensus       308 ~h~~-------------------------------------~v-~~l~~~p~~~~l~s~s~d----------------g~  333 (504)
                      ....                                     .+ ..+++.+....++.++.+                +.
T Consensus       200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s  279 (599)
T 1w6s_A          200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT  279 (599)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccce
Confidence            1100                                     01 134556677777777665                38


Q ss_pred             EEEEECCCCeEEEEeecCCCCC-----CCCCeEEEEEC-CCC---CEEEEEeCCCcEEEEEcCCCceeeeeeCCC-----
Q 010669          334 WCFYDLSSGICLTQVSDAGTDG-----RPEGYTSAAFH-PDG---LILGTGTSEALVKIWDVKSQANVAKFDGHV-----  399 (504)
Q Consensus       334 i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~-pdg---~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-----  399 (504)
                      |.-+|.++|+.+..+.......     ...++ -+... .+|   ..++.++.+|.++++|.++++.+.......     
T Consensus       280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~  358 (599)
T 1w6s_A          280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF  358 (599)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccc
Confidence            9999999999887776321110     11112 23332 567   577888999999999999998876553110     


Q ss_pred             -------C-Ce--------------------------EEEEEcCCCcEEEEEe---------------------------
Q 010669          400 -------G-AV--------------------------TAISFSENGYYLATAA---------------------------  418 (504)
Q Consensus       400 -------~-~i--------------------------~~l~~s~~g~~l~s~~---------------------------  418 (504)
                             + ++                          ..++|+|+..++++..                           
T Consensus       359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  438 (599)
T 1w6s_A          359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM  438 (599)
T ss_dssp             EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccccee
Confidence                   0 11                          2356676655554421                           


Q ss_pred             ------------CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEcc
Q 010669          419 ------------HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP  483 (504)
Q Consensus       419 ------------~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~  483 (504)
                                  ..+ |..||+.+++.+-.....   .+...-.+...+..+++++.|  ++.||.    ++++.+-+++
T Consensus       439 ~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D~----~tG~~lW~~~  511 (599)
T 1w6s_A          439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDS----DTGDLLWKFK  511 (599)
T ss_dssp             EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEET----TTCCEEEEEE
T ss_pred             ccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEEC----CCCCEEEEee
Confidence                        235 888999998877666532   112111123356777778877  888887    5566666554


Q ss_pred             C
Q 010669          484 D  484 (504)
Q Consensus       484 ~  484 (504)
                      .
T Consensus       512 l  512 (599)
T 1w6s_A          512 I  512 (599)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.58  E-value=8.7e-08  Score=75.98  Aligned_cols=52  Identities=23%  Similarity=0.407  Sum_probs=46.5

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC---CCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG---KCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+.+.+||++| +||+|++.+|.+|+..++   +||+++.+++.++|.+.
T Consensus        22 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~   76 (112)
T 1jm7_A           22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES   76 (112)
T ss_dssp             TSCSSSCCCCSSCCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred             CCCcccChhhcCeEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence            46999999999999996 999999999999999764   79999999998877554

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.55  E-value=6.1e-08  Score=74.86  Aligned_cols=52  Identities=15%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVP   52 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~   52 (504)
                      +.|+|+.+.+.+||+.+.+||+|++.+|.+|+..+.+||+++.++..++|.+
T Consensus        23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~   74 (99)
T 2y43_A           23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKN   74 (99)
T ss_dssp             TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred             CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCc
Confidence            4699999999999998569999999999999998889999999999877654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=8.4e-05  Score=73.77  Aligned_cols=235  Identities=12%  Similarity=0.123  Sum_probs=135.8

Q ss_pred             CeEEEEecc-CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC-CC----cEEEEeCCCCC
Q 010669          225 GIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DK----TVRVWQGSEDG  298 (504)
Q Consensus       225 ~I~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg----~i~iwd~~~~~  298 (504)
                      ....++++| ++..|+++...+.|+.+|+..+....... .......++|++++++|+.+.. ++    .+.+++...  
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g--  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES--  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG--
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC--
Confidence            346789998 45555555555889999987665444333 4556889999999996666554 22    233344322  


Q ss_pred             CcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE-EEEEe
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI-LGTGT  376 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~-l~~g~  376 (504)
                      .+.....+.. .....+++++| ++.++++-..++.|..+|...+........    ........++|+|+|++ +++-.
T Consensus       215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~----~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI----QDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC----SSSSCCEEEEECTTSSEEEEEET
T ss_pred             ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc----CCCCcceeEEEcCCCCEEEEEEC
Confidence            2221122221 23457788999 666666666778999999987765332221    11234678999999994 55555


Q ss_pred             CCCcEEEEEcCC--Cce--eeeeeCC---------------CCCeE-EEEEc--------CCCcEEEEEeCCc-EEEEEc
Q 010669          377 SEALVKIWDVKS--QAN--VAKFDGH---------------VGAVT-AISFS--------ENGYYLATAAHDG-VKLWDL  427 (504)
Q Consensus       377 ~dg~I~iwd~~~--~~~--~~~~~~~---------------~~~i~-~l~~s--------~~g~~l~s~~~d~-v~vwd~  427 (504)
                      ..+.|..++...  +..  +..+.+.               -.... .++..        ++|.++++-..+. |+.++.
T Consensus       290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~  369 (430)
T 3tc9_A          290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP  369 (430)
T ss_dssp             TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT
T ss_pred             CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC
Confidence            678899988653  211  1122111               11233 45553        3355544444444 888883


Q ss_pred             CCCcceeeeecC---------C-------CCCCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669          428 RKLKNFRSFESS---------D-------SETPTNSVDFDHSGSYLAVASAD---IRVYQV  469 (504)
Q Consensus       428 ~~~~~~~~~~~~---------~-------~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~  469 (504)
                       .+... .+...         +       .-.....+++++++..|+++...   |+.++.
T Consensus       370 -~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          370 -QGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             -TSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             -CCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence             44332 22211         0       01257899999965555555443   666554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.54  E-value=3.7e-05  Score=79.39  Aligned_cols=239  Identities=15%  Similarity=0.143  Sum_probs=144.1

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCcc----cee-EEEEeeC---CC-EEEEEe------CCCcEEEEeCCCCCC
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK----KVT-SVKFVTE---GD-LFLTGS------ADKTVRVWQGSEDGN  299 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~----~v~-~l~~s~~---~~-~l~s~s------~dg~i~iwd~~~~~~  299 (504)
                      +..++.++.|+.|..+|..+|+.+..+.....    .+. .-....+   ++ .+++++      .+|.|..+|..++. 
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~-  195 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE-  195 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC-
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC-
Confidence            56778888999999999999998876653221    111 1111111   22 566654      37899999988763 


Q ss_pred             cceeEEeccCC----------------------------------------c-CeEEEEEccCCCEEEEEeC--------
Q 010669          300 YDCKHTLKDHT----------------------------------------A-EVQAVTVHATNKYFVTASL--------  330 (504)
Q Consensus       300 ~~~~~~~~~h~----------------------------------------~-~v~~l~~~p~~~~l~s~s~--------  330 (504)
                        .+-......                                        + .-..+++.|....++.++.        
T Consensus       196 --~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~  273 (582)
T 1flg_A          196 --EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW  273 (582)
T ss_dssp             --EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred             --EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence              222211100                                        0 0013456666677776653        


Q ss_pred             ------------C----CeEEEEECCCCeEEEEeecCCCC-----CCCCCeEEEEEC-CCCC---EEEEEeCCCcEEEEE
Q 010669          331 ------------D----NTWCFYDLSSGICLTQVSDAGTD-----GRPEGYTSAAFH-PDGL---ILGTGTSEALVKIWD  385 (504)
Q Consensus       331 ------------d----g~i~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~-pdg~---~l~~g~~dg~I~iwd  385 (504)
                                  |    +.|.-+|..+|+.+..+......     ....++ -+... .+|+   .++.++.+|.++++|
T Consensus       274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD  352 (582)
T 1flg_A          274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVD  352 (582)
T ss_dssp             GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred             ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEE
Confidence                        2    58999999999988877532111     011122 22222 4674   788899999999999


Q ss_pred             cCCCceeeeeeCCC------------C-C--------------------------------eEEEEEcCCCcEEEEEe--
Q 010669          386 VKSQANVAKFDGHV------------G-A--------------------------------VTAISFSENGYYLATAA--  418 (504)
Q Consensus       386 ~~~~~~~~~~~~~~------------~-~--------------------------------i~~l~~s~~g~~l~s~~--  418 (504)
                      ..+++.+..+....            + +                                -..++++|+...+++..  
T Consensus       353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~  432 (582)
T 1flg_A          353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH  432 (582)
T ss_dssp             TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred             CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence            99998876554321            0 0                                01346666544444432  


Q ss_pred             -------------------------------CCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--E
Q 010669          419 -------------------------------HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--I  464 (504)
Q Consensus       419 -------------------------------~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i  464 (504)
                                                     .++ |..||+.+++.+.......   ++..-.....+.++++++.|  +
T Consensus       433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~g~~dg~l  509 (582)
T 1flg_A          433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL---PLWAGVLATAGNLVFTGTGDGYF  509 (582)
T ss_dssp             EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS---CCCSCCEEETTTEEEEECTTSEE
T ss_pred             cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC---CCcccceEeCCCEEEEECCCCcE
Confidence                                           135 9999999998877665432   22211122346778888887  8


Q ss_pred             EEEEeeccCccceeEEEccC
Q 010669          465 RVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       465 ~vw~~~~~~~~~~~i~~~~~  484 (504)
                      +.||.    ++++.+-.++.
T Consensus       510 ~A~D~----~tG~~lW~~~~  525 (582)
T 1flg_A          510 KAFDA----KSGKELWKFQT  525 (582)
T ss_dssp             EEEET----TTCCEEEEEEC
T ss_pred             EEEEC----CCCCEEEEecC
Confidence            88887    66777776655

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.54  E-value=8e-08  Score=74.20  Aligned_cols=53  Identities=21%  Similarity=0.364  Sum_probs=48.0

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhc-CCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY-GKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+.+.+||+...+||+|++.+|.+|+..+ .+||+++.+++.++|+..
T Consensus        23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~   76 (100)
T 3lrq_A           23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNC   76 (100)
T ss_dssp             TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhh
Confidence            46999999999999933599999999999999988 489999999999998876

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.53  E-value=0.00017  Score=65.58  Aligned_cols=204  Identities=14%  Similarity=0.205  Sum_probs=129.1

Q ss_pred             EcccCccceeEEEEeeCCCE-EEEEeCCCcEEEEeCCCCCCcceeEEec-cCCcCeEEEEEccCCCEEEEEeCCCeEEEE
Q 010669          260 TLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFY  337 (504)
Q Consensus       260 ~~~~h~~~v~~l~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iw  337 (504)
                      .+.+-...+..++|+|+++. +++...++.|...|.. +   .....+. +-....-.|++.+++.++++.-.++.+.++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g---~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G---DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVI   96 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C---CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C---CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence            45566678999999997664 5557778888888887 3   4444442 222567889999888877776677899999


Q ss_pred             ECCCCeE---EEEeecC-CCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcC---CCceeeeee-------CCCCCeE
Q 010669          338 DLSSGIC---LTQVSDA-GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK---SQANVAKFD-------GHVGAVT  403 (504)
Q Consensus       338 d~~~~~~---~~~~~~~-~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~---~~~~~~~~~-------~~~~~i~  403 (504)
                      ++.....   ....... .....+.....++|+|+++.|.++.......+|.+.   ....+..+.       .+...+.
T Consensus        97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S  176 (255)
T 3qqz_A           97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS  176 (255)
T ss_dssp             EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred             EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence            8876542   2222211 112345668999999988777776665555555553   111122221       1234678


Q ss_pred             EEEEcCCCcEEEEEeC-Cc-EEEEEcCCCcceeeeecCCC-------CCCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669          404 AISFSENGYYLATAAH-DG-VKLWDLRKLKNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASADIRVYQV  469 (504)
Q Consensus       404 ~l~~s~~g~~l~s~~~-d~-v~vwd~~~~~~~~~~~~~~~-------~~~v~~i~~~~~g~~l~~~~~di~vw~~  469 (504)
                      .++++|....|+.-++ .. +.++|.. ++.+..+.....       ......|+|+++|+..++ ++.-.+|.+
T Consensus       177 ~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          177 GAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             eEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            9999996544444444 45 8899965 555555554321       135689999999985555 544355555

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.53  E-value=5.6e-08  Score=68.35  Aligned_cols=52  Identities=19%  Similarity=0.393  Sum_probs=47.5

Q ss_pred             CccccCCCCCCCc-------eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEP-------VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+.+.+|       ++. .+||+|.+.+|++|++.+.+||+++.+++.++++++
T Consensus         4 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   62 (64)
T 2xeu_A            4 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI   62 (64)
T ss_dssp             CBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHcCCCCCCCCccCCccceeee
Confidence            3699999998887       677 499999999999999999999999999999999876

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.53  E-value=0.00013  Score=78.39  Aligned_cols=266  Identities=11%  Similarity=0.072  Sum_probs=158.6

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc--------------cCccceeEEEEeeCCCEEEEEeCCCc
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS--------------GHSKKVTSVKFVTEGDLFLTGSADKT  288 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--------------~h~~~v~~l~~s~~~~~l~s~s~dg~  288 (504)
                      ...|.++...++|.+.+ |+..+-|.++|..++.......              .....|.++...++|. |-.|+.++-
T Consensus       257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred             CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence            35699999888776544 5554558888887654322111              1345688998888776 455666677


Q ss_pred             EEEEeCCCCCCcceeEE-------eccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeE
Q 010669          289 VRVWQGSEDGNYDCKHT-------LKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT  361 (504)
Q Consensus       289 i~iwd~~~~~~~~~~~~-------~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  361 (504)
                      |..|+..... +.....       .......|.++...++|. |..|+.++-|..||..++.... +... .......|.
T Consensus       335 l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~-~~~~~~~v~  410 (781)
T 3v9f_A          335 INFISNAPPT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIY-NKEN-RELLSNSVL  410 (781)
T ss_dssp             EEEECSSCCS-CEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEEC-C------CCCSBEE
T ss_pred             EEEeCCCCCc-ceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEE-ccCC-CCCCCcceE
Confidence            8888876531 111110       011235689998887766 4556666778999987553322 1110 112345789


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee--CCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecC
Q 010669          362 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESS  439 (504)
Q Consensus       362 ~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~  439 (504)
                      ++...++|.+.+ |+.++-|..||.++++......  .....|.++...++|.+.+. +.+||..||..+++........
T Consensus       411 ~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~~Gl~~~~~~~~~~~~~~~~~  488 (781)
T 3v9f_A          411 CSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-THAGVFVIDLASKKVIHHYDTS  488 (781)
T ss_dssp             EEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ETTEEEEEESSSSSCCEEECTT
T ss_pred             EEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-ECCceEEEeCCCCeEEecccCc
Confidence            999988887555 6666678899987665332211  13457999999888875554 4577999998876543322111


Q ss_pred             ---CCCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCCC--CCCceeEEEEeecCc
Q 010669          440 ---DSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLS--GTGAASFLFLFVLGQ  501 (504)
Q Consensus       440 ---~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~--~~~~v~~l~~~~~g~  501 (504)
                         .....|.++..+++|.+.+....+ +..|+.    .. ..+..+....  ....|.++...++|.
T Consensus       489 ~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~----~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~  551 (781)
T 3v9f_A          489 NSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTP----DM-QLVRKFNQYEGFCSNTINQIYRSSKGQ  551 (781)
T ss_dssp             TSSCSCSCEEEEEECTTCCEEEEESSSCEEEECT----TC-CEEEEECTTTTCSCSCEEEEEECTTSC
T ss_pred             ccccccceeEEEEEcCCCCEEEEEcCCCEEEEeC----CC-CeEEEccCCCCCCCCeeEEEEECCCCC
Confidence               013578999999999877655434 777764    11 1222332110  134567776666654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=4.3e-08  Score=69.39  Aligned_cols=48  Identities=19%  Similarity=0.297  Sum_probs=43.8

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHH-hcCCCCCCCCCCCCCcc
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHIL-DYGKCPVTGEPLTMDDI   50 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~   50 (504)
                      .|+|+.+.+.+||+++ +||+|.+.+|.+|+. .+.+||+++.+++.+++
T Consensus        17 ~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           17 KCEKCHLVLCSPKQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             ECTTTCCEESSCCCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             CCCCCChHhcCeeECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            5999999999999985 999999999999995 45689999999998876

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.50  E-value=0.00015  Score=71.92  Aligned_cols=236  Identities=11%  Similarity=0.110  Sum_probs=135.7

Q ss_pred             CeEEEEeccC--CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC---C-cEEEEeCCCCC
Q 010669          225 GIVSLDIHYS--KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---K-TVRVWQGSEDG  298 (504)
Q Consensus       225 ~I~~~~~s~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d---g-~i~iwd~~~~~  298 (504)
                      .-..++|+|+  +..|+.+...+.|+.++..++....... .......++|+++|+++++....   . .+...+...  
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~--  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS--  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG--
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC--
Confidence            3568899984  4445444444889999988776654433 44568999999999944443321   1 133333222  


Q ss_pred             CcceeEEeccCCcCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE-EEEEe
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI-LGTGT  376 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~-l~~g~  376 (504)
                      .+.....+. .......++++| ++.++++-..++.|+.+|..++.....+...   +....-..++|+|+|+. +++-.
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~---~~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM---DTKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC---SCCSSCEEEEECTTSSEEEEEET
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc---CCCCCcccEEEeCCCCEEEEEeC
Confidence            111111121 223456788999 6666666666789999999877653333211   11123357999999984 45555


Q ss_pred             CCCcEEEEEcCC--Cce--eeeeeCC---------------CCCeEEEEE---------cCCCcEEEEEeCCc-EEEEEc
Q 010669          377 SEALVKIWDVKS--QAN--VAKFDGH---------------VGAVTAISF---------SENGYYLATAAHDG-VKLWDL  427 (504)
Q Consensus       377 ~dg~I~iwd~~~--~~~--~~~~~~~---------------~~~i~~l~~---------s~~g~~l~s~~~d~-v~vwd~  427 (504)
                      ..+.|+.+|+..  +..  ...+.+.               -.....+++         .++|.++++-..+. |+.++.
T Consensus       293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            678899988652  221  1122111               124677999         66776666655555 999985


Q ss_pred             CCCcceeeeecCC----------------CCCCeeEEEECCCCCEEEEEeC-c--EEEEEe
Q 010669          428 RKLKNFRSFESSD----------------SETPTNSVDFDHSGSYLAVASA-D--IRVYQV  469 (504)
Q Consensus       428 ~~~~~~~~~~~~~----------------~~~~v~~i~~~~~g~~l~~~~~-d--i~vw~~  469 (504)
                       ++. +.++....                .-.....|+++|....|+++.. +  |+.+++
T Consensus       373 -~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          373 -EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             -TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             -CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence             443 23332210                0124678999944444444443 3  666554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.50  E-value=1.1e-05  Score=85.11  Aligned_cols=213  Identities=14%  Similarity=0.219  Sum_probs=135.7

Q ss_pred             CCcEEEEcCCCCceEEEcccC---c----------------------------cceeEEEEeeCCCEEEEEeCCCc----
Q 010669          244 DTNAVLFDRPSGQIVTTLSGH---S----------------------------KKVTSVKFVTEGDLFLTGSADKT----  288 (504)
Q Consensus       244 dg~i~vwd~~~~~~~~~~~~h---~----------------------------~~v~~l~~s~~~~~l~s~s~dg~----  288 (504)
                      +|.|+.||..+|+.+..+...   .                            .....+++.++..+++.++.++.    
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            589999999999988776421   0                            01124678887788888877763    


Q ss_pred             ---------------EEEEeCCCCCCcceeEEec--cCC-------cCeEEEEEccCCC---EEEEEeCCCeEEEEECCC
Q 010669          289 ---------------VRVWQGSEDGNYDCKHTLK--DHT-------AEVQAVTVHATNK---YFVTASLDNTWCFYDLSS  341 (504)
Q Consensus       289 ---------------i~iwd~~~~~~~~~~~~~~--~h~-------~~v~~l~~~p~~~---~l~s~s~dg~i~iwd~~~  341 (504)
                                     |..+|..++   +.+-.++  .|.       .+.....+..+|+   .++.++.+|.++++|..+
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG---~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t  333 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTG---KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN  333 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCC---ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC
Confidence                           899999886   3333332  222       2233333334665   688999999999999999


Q ss_pred             CeEEEEeecCCC---------CCC---------C-------------CCeEEEEECCCCCEEEEEe--------------
Q 010669          342 GICLTQVSDAGT---------DGR---------P-------------EGYTSAAFHPDGLILGTGT--------------  376 (504)
Q Consensus       342 ~~~~~~~~~~~~---------~~~---------~-------------~~v~~~~~~pdg~~l~~g~--------------  376 (504)
                      |+.+........         .+.         .             ..-..++++|+..++++..              
T Consensus       334 G~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~  413 (668)
T 1kv9_A          334 GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDF  413 (668)
T ss_dssp             CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGC
T ss_pred             CCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccc
Confidence            998754432110         000         0             0011367888766665421              


Q ss_pred             ----------------------CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcce
Q 010669          377 ----------------------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF  433 (504)
Q Consensus       377 ----------------------~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~  433 (504)
                                            .+|.|..||+.+++.+-.+..+ .+.....+...|.+++.++.++ |++||.++++.+
T Consensus       414 ~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          414 VTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             CCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence                                  2378999999999987776533 2333334444677888888888 999999999999


Q ss_pred             eeeecCCCCCCeeEEEECCCCC-EEEEEe
Q 010669          434 RSFESSDSETPTNSVDFDHSGS-YLAVAS  461 (504)
Q Consensus       434 ~~~~~~~~~~~v~~i~~~~~g~-~l~~~~  461 (504)
                      ..+..... ....-+.+..+|+ |+++++
T Consensus       493 ~~~~~~~~-~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          493 WQFEAQSG-IVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EEEECSSC-CCSCCEEEEETTEEEEEEEE
T ss_pred             eEecCCCC-cccCceEEEECCEEEEEEEe
Confidence            88876421 1112344445665 565554

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.49  E-value=1.2e-07  Score=78.88  Aligned_cols=47  Identities=19%  Similarity=0.263  Sum_probs=43.4

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCCCCCCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGEPLTMD   48 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~   48 (504)
                      +.|+|+.+++.+||++| +||+|++.||.+|+.... +||+++.++..+
T Consensus        79 ~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           79 FMCVCCQELVYQPVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             TBCTTTSSBCSSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CEeecCChhhcCCEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            46999999999999996 999999999999999765 799999999977

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.49  E-value=1e-07  Score=76.20  Aligned_cols=52  Identities=35%  Similarity=0.483  Sum_probs=47.4

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+++.+||+++ +||+|++.+|.+|+..++ +||+++.+++.+++++-
T Consensus        19 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   71 (118)
T 3hct_A           19 YECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD   71 (118)
T ss_dssp             GBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred             CCCCcCChhhcCeEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccC
Confidence            36999999999999996 999999999999999887 89999999998887654

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.48  E-value=8.4e-08  Score=69.01  Aligned_cols=52  Identities=19%  Similarity=0.393  Sum_probs=47.2

Q ss_pred             CccccCCCCCCCc-------eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEP-------VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+.+.+|       ++. .+||+|.+.+|.+|++.+.+||+++.+++.++++++
T Consensus        11 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   69 (71)
T 3ng2_A           11 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI   69 (71)
T ss_dssp             CBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred             CCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence            3699999999888       666 599999999999999999999999999999998876

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=1.6e-07  Score=69.45  Aligned_cols=45  Identities=22%  Similarity=0.391  Sum_probs=42.2

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT   46 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   46 (504)
                      +.|+|+.+.+.+||++| +||+|++.+|.+|++.+.+||+++.++.
T Consensus        16 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           16 FRCFICRQAFQNPVVTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             SBCSSSCSBCCSEEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCcCCCchhcCeeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            46999999999999985 9999999999999999889999999986

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.48  E-value=0.00017  Score=69.33  Aligned_cols=205  Identities=10%  Similarity=-0.003  Sum_probs=127.3

Q ss_pred             CeEEEEeccCCCEE-EEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCCcce
Q 010669          225 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       225 ~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      ....++|++.+..| ++-...+.|..++...+.....+.........+++.+. +.++++-...+.|.+.+.....   .
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---~  150 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---R  150 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---C
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---e
Confidence            47899999766554 44456788999998766544444333345678999874 4455555667889999987531   2


Q ss_pred             eEEeccCCcCeEEEEEccCCCEEEEEeC-C-CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE-EEeCCC
Q 010669          303 KHTLKDHTAEVQAVTVHATNKYFVTASL-D-NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSEA  379 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~-~g~~dg  379 (504)
                      ...+...-.....++++|.+..|+.+.. . +.|..+++..........     ..-.....++++|++..|. +-...+
T Consensus       151 ~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-----~~~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-----THLFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-----SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-----CCCCCcceEEEeCCCCEEEEEECCCC
Confidence            2222233355789999997666555543 4 788888887543322221     1123578999998655554 445567


Q ss_pred             cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec
Q 010669          380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~  438 (504)
                      .|..+|+........+.........+++. ++.++++-...+ |..+|..+++....+..
T Consensus       226 ~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  284 (349)
T 3v64_C          226 VIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN  284 (349)
T ss_dssp             EEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             EEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence            89999986443332333334567788883 444444443444 88888767766665543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.48  E-value=0.00011  Score=71.72  Aligned_cols=206  Identities=10%  Similarity=-0.006  Sum_probs=128.5

Q ss_pred             CCeEEEEeccCCCE-EEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          224 PGIVSLDIHYSKDV-IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       224 ~~I~~~~~s~~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      .....++|++.+.. +++-...+.|..++...+.....+.........+++.+.+ .++++-...+.|.+.++...   .
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~---~  192 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---H  192 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC---S
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC---c
Confidence            35788999976554 4555567889999987665444443333456788888754 44555556778888887653   1


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeC-C-CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE-EEEeCC
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASL-D-NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGTSE  378 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l-~~g~~d  378 (504)
                      ....+.........++++|.+..|+.+.. . +.|..+++..........     ..-.....++|+|++..| ++-...
T Consensus       193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-----~~~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-----THLFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-----SSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred             eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-----CCCCCeeeEEEeCCCCEEEEEECCC
Confidence            22222233356789999997776666554 3 688888887544333222     112357899999855544 454566


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~  438 (504)
                      +.|..+|+........+.........|++. .+.++++-...+ |..+|..+++....+..
T Consensus       268 ~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          268 HVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN  327 (386)
T ss_dssp             TEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence            789999986443333333334467788883 444444444445 88898777776666654

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.47  E-value=1.8e-07  Score=70.05  Aligned_cols=52  Identities=27%  Similarity=0.489  Sum_probs=47.5

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh------cCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD------YGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+.+.+||+.| +||+|++.+|.+|+..      ..+||+++.+++.++|.+-
T Consensus        20 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n   77 (85)
T 2ecw_A           20 VTCPICLELLKEPVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN   77 (85)
T ss_dssp             TSCTTTCSCCSSCEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEEC
T ss_pred             CCCcCCChhhCcceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcC
Confidence            36999999999999996 9999999999999998      5679999999999888765

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.46  E-value=1.6e-07  Score=75.79  Aligned_cols=46  Identities=17%  Similarity=0.236  Sum_probs=42.1

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCCCCCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGEPLTM   47 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~   47 (504)
                      +.|+|+.+++.+||+.| +||+|++.+|.+|+..++ +||+++.+++.
T Consensus        53 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           53 FQCICCQELVFRPITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             TBCTTTSSBCSSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCcCChHHcCcEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            46999999999999996 999999999999999665 79999999876

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.46  E-value=0.00017  Score=68.46  Aligned_cols=214  Identities=9%  Similarity=0.049  Sum_probs=125.1

Q ss_pred             CCcEEEEcCCCCc--eEEEcccCccceeEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEcc
Q 010669          244 DTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA  320 (504)
Q Consensus       244 dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p  320 (504)
                      ...|+.+++....  ....+. ....+..+.|.+.+ .++.+-...+.|..+++.....  ....+...-....++++.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~--~~~~~~~~l~~p~glavd~   88 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--VQNVVVSGLLSPDGLACDW   88 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC--CCEEEEECCSCCCEEEEET
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc--eEEEEcCCCCCccEEEEEc
Confidence            4568888887653  222222 23456789999854 4555555678899998876421  1111222223466788887


Q ss_pred             CCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeeeeeC
Q 010669          321 TNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT--SEALVKIWDVKSQANVAKFDG  397 (504)
Q Consensus       321 ~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~--~dg~I~iwd~~~~~~~~~~~~  397 (504)
                      .+. ++++-...+.|.++++..........     ........++++|.+..|+...  ..+.|..+++...........
T Consensus        89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-----~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  163 (318)
T 3sov_A           89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFW-----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS  163 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEEC-----SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             CCCeEEEEECCCCEEEEEECCCCcEEEEEe-----CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence            554 44555567899999987654332221     1124578999999655555444  357888888753322222222


Q ss_pred             CCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669          398 HVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV  469 (504)
Q Consensus       398 ~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~  469 (504)
                      .-...+.|+|++++..|+.+... + |..+|+... ....+.. ........++++.  ..++.....   |..++.
T Consensus       164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~-~~~~~P~glav~~--~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVK-GSLPHPFALTLFE--DILYWTDWSTHSILACNK  236 (318)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC-SCCSCEEEEEEET--TEEEEEETTTTEEEEEET
T ss_pred             CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEec-CCCCCceEEEEeC--CEEEEEecCCCeEEEEEC
Confidence            23467899999977777776655 4 999998643 3333322 1134567788753  344444433   555553

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.43  E-value=1.5e-07  Score=77.52  Aligned_cols=45  Identities=20%  Similarity=0.301  Sum_probs=42.1

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT   46 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   46 (504)
                      +.|+|+.+.+.+||+.| +||+|++.+|.+|+..+.+||+++.++.
T Consensus        54 ~~C~iC~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   98 (138)
T 4ayc_A           54 LQCIICSEYFIEAVTLN-CAHSFCSYCINEWMKRKIECPICRKDIK   98 (138)
T ss_dssp             SBCTTTCSBCSSEEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred             CCCcccCcccCCceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence            36999999999999997 9999999999999999999999998875

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=9.6e-08  Score=68.64  Aligned_cols=52  Identities=13%  Similarity=0.105  Sum_probs=47.3

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+.+.+||+.| +||+|.+.+|.+|+..+.+||+++.++..++|+.-
T Consensus        16 ~~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p   67 (71)
T 2d8t_A           16 PECAICLQTCVHPVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSG   67 (71)
T ss_dssp             CBCSSSSSBCSSEEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCS
T ss_pred             CCCccCCcccCCCEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCC
Confidence            36999999999999996 99999999999999988899999999998877544

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=1.9e-07  Score=67.50  Aligned_cols=49  Identities=22%  Similarity=0.383  Sum_probs=44.0

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh---cCCCCCCCCCCCCCcc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD---YGKCPVTGEPLTMDDI   50 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~   50 (504)
                      +.|+|+.+.+.+||+.| +||+|++.+|.+|++.   +.+||+++++++.+++
T Consensus        21 ~~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           21 VICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CBCTTTCSBCSSEEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             CEeccCCcccCCeEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            36999999999999995 9999999999999973   4479999999998876

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.42  E-value=2.5e-07  Score=73.76  Aligned_cols=52  Identities=23%  Similarity=0.337  Sum_probs=46.8

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+++.+||+++ +||+|++.+|.+|+.. +.+||+++.+++.++|++.
T Consensus        24 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   76 (116)
T 1rmd_A           24 ISCQICEHILADPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP   76 (116)
T ss_dssp             TBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred             CCCCCCCcHhcCcEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence            46999999999999995 9999999999999998 5689999999998887643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.42  E-value=3.9e-05  Score=79.11  Aligned_cols=218  Identities=13%  Similarity=0.099  Sum_probs=133.5

Q ss_pred             CEEEEEeC------CCcEEEEcCCCCceEEEcccCccc-------------------------------------e-eEE
Q 010669          236 DVIATGGV------DTNAVLFDRPSGQIVTTLSGHSKK-------------------------------------V-TSV  271 (504)
Q Consensus       236 ~~l~sg~~------dg~i~vwd~~~~~~~~~~~~h~~~-------------------------------------v-~~l  271 (504)
                      ..+++++.      +|.|+.+|..+|+.+..+......                                     + ..+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            45555554      789999999999988766532110                                     0 135


Q ss_pred             EEeeCCCEEEEEeCC----------------CcEEEEeCCCCCCcceeEEec--cC--------CcCeEEEEEccCCC--
Q 010669          272 KFVTEGDLFLTGSAD----------------KTVRVWQGSEDGNYDCKHTLK--DH--------TAEVQAVTVHATNK--  323 (504)
Q Consensus       272 ~~s~~~~~l~s~s~d----------------g~i~iwd~~~~~~~~~~~~~~--~h--------~~~v~~l~~~p~~~--  323 (504)
                      ++.++...++.+..+                +.|..+|..++   +.+-.++  .|        ..++. +...++|+  
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG---~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~  316 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG---MAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMT  316 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC---CEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEE
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCC---cEEEEecCCCCcccccccCCCCEE-EecccCCcEE
Confidence            566655666665532                35889998886   3333332  22        12222 22234674  


Q ss_pred             -EEEEEeCCCeEEEEECCCCeEEEEeecCCCC--------CCCCCe--------------------------EEEEECCC
Q 010669          324 -YFVTASLDNTWCFYDLSSGICLTQVSDAGTD--------GRPEGY--------------------------TSAAFHPD  368 (504)
Q Consensus       324 -~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~~v--------------------------~~~~~~pd  368 (504)
                       .++.++.+|.++++|..+++.+.........        ....++                          ..++++|+
T Consensus       317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  396 (571)
T 2ad6_A          317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE  396 (571)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence             5778899999999999999988766432100        000011                          24678887


Q ss_pred             CCEEEEEe-------------------------------------CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCC
Q 010669          369 GLILGTGT-------------------------------------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG  411 (504)
Q Consensus       369 g~~l~~g~-------------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g  411 (504)
                      ..++++..                                     .+|.|..||+.+++.+-++... ..+....+...+
T Consensus       397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~g  475 (571)
T 2ad6_A          397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKG  475 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETT
T ss_pred             CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECC
Confidence            77776653                                     3578999999999887776532 222222223345


Q ss_pred             cEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEE
Q 010669          412 YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV  459 (504)
Q Consensus       412 ~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~  459 (504)
                      ..++.++.++ |+.||.++++.+..+..... .....+.+..+|+.++.
T Consensus       476 g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~-~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          476 GLVWYATLDGYLKALDNKDGKELWNFKMPSG-GIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCCEEEEEeCCCC-cEeeeEEEEECCEEEEE
Confidence            6677788888 99999999999988876431 11122345566654443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.39  E-value=0.00087  Score=71.36  Aligned_cols=225  Identities=7%  Similarity=-0.039  Sum_probs=132.7

Q ss_pred             EEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCC-cceeEEeccCCcCeE
Q 010669          237 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQ  314 (504)
Q Consensus       237 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~  314 (504)
                      +|+.+. ...|+..++........+. ....+..++|.+.+. ++++-...+.|+.+++..... ......+........
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            444433 3467778877655444444 345678999998544 455555667888888865211 011222332334567


Q ss_pred             EEEEccCCCEEEE-EeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CC-CcEEEEEcCCCce
Q 010669          315 AVTVHATNKYFVT-ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SE-ALVKIWDVKSQAN  391 (504)
Q Consensus       315 ~l~~~p~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~d-g~I~iwd~~~~~~  391 (504)
                      .|++.+.+..|+. -...+.|.+.++........+.     ........|+++|.+..|+... .+ +.|...++.....
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-----~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~  549 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  549 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-----CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce
Confidence            8899877755554 4557899999998665433332     1123578999999654444443 33 7899999864443


Q ss_pred             eeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEE
Q 010669          392 VAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQ  468 (504)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~  468 (504)
                      ...+...-...+.|++++.+..|+.+... . |..+|+........+...........|++  .+.+|+..... -+|+.
T Consensus       550 ~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~  627 (791)
T 3m0c_C          550 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFS  627 (791)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEE
Confidence            33333334578999999877777777655 3 99999865443333332211233456666  44577766655 55555


Q ss_pred             ee
Q 010669          469 VA  470 (504)
Q Consensus       469 ~~  470 (504)
                      ++
T Consensus       628 ~d  629 (791)
T 3m0c_C          628 AN  629 (791)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.38  E-value=2.7e-07  Score=69.00  Aligned_cols=52  Identities=21%  Similarity=0.364  Sum_probs=47.2

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh------cCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD------YGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+.+.+|++.| +||+|++.+|.+|+..      ..+||+++.+++.++|.+-
T Consensus        20 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n   77 (85)
T 2ecv_A           20 VTCPICLELLTQPLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN   77 (85)
T ss_dssp             CCCTTTCSCCSSCBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred             CCCCCCCcccCCceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence            46999999999999996 9999999999999998      6789999999999887654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.37  E-value=0.00016  Score=68.21  Aligned_cols=193  Identities=15%  Similarity=0.260  Sum_probs=126.3

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeC----CC---EEEEEe-C--CCcEEEEeCCCCCCccee
Q 010669          234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE----GD---LFLTGS-A--DKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~----~~---~l~s~s-~--dg~i~iwd~~~~~~~~~~  303 (504)
                      ...+++.....+-+.+||+ +|+.+..+..  +.++.+..-|+    |+   ++++.. .  +++|.+|++....  ..+
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--~~l  113 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GTL  113 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--CCE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--Cce
Confidence            4456666677788999999 7998888864  56777777663    22   233333 3  5799999774211  123


Q ss_pred             EEecc------CC-cCeEEEEE--ccC-CC-EEEEEeCCCeEEEEECC-------CCeEEEEeecCCCCCCCCCeEEEEE
Q 010669          304 HTLKD------HT-AEVQAVTV--HAT-NK-YFVTASLDNTWCFYDLS-------SGICLTQVSDAGTDGRPEGYTSAAF  365 (504)
Q Consensus       304 ~~~~~------h~-~~v~~l~~--~p~-~~-~l~s~s~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~~~v~~~~~  365 (504)
                      ..+..      .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+.+..+..      ...+..|..
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l------gsq~Egcvv  187 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM------NSQTEGMAA  187 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC------SSCEEEEEE
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC------CCCcceEEE
Confidence            33311      11 45677777  664 43 68888889999999883       2344555542      246888999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcC-----CCceeeeee-CC-CCCeEEEEEc--CCCc-EEEEEeCC-c-EEEEEcC-CCcc
Q 010669          366 HPDGLILGTGTSEALVKIWDVK-----SQANVAKFD-GH-VGAVTAISFS--ENGY-YLATAAHD-G-VKLWDLR-KLKN  432 (504)
Q Consensus       366 ~pdg~~l~~g~~dg~I~iwd~~-----~~~~~~~~~-~~-~~~i~~l~~s--~~g~-~l~s~~~d-~-v~vwd~~-~~~~  432 (504)
                      .+....|+++-++.-|..||..     +++.+..+. ++ ...+..|++.  ++|. ||++++.+ + +.+||.. +.+.
T Consensus       188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~  267 (355)
T 3amr_A          188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY  267 (355)
T ss_dssp             ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred             cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence            9988899999998778777854     234454442 22 2368888884  4554 66666644 3 9999996 5666


Q ss_pred             eeeee
Q 010669          433 FRSFE  437 (504)
Q Consensus       433 ~~~~~  437 (504)
                      +..|.
T Consensus       268 vg~f~  272 (355)
T 3amr_A          268 VADFR  272 (355)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66664

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.36  E-value=0.0008  Score=63.65  Aligned_cols=204  Identities=9%  Similarity=-0.026  Sum_probs=124.4

Q ss_pred             CCeEEEEeccCCCE-EEEEeCCCcEEEEcCCC----CceEEEcccCccceeEEEEeeCC-CEEEEEeCCCcEEEEeCCCC
Q 010669          224 PGIVSLDIHYSKDV-IATGGVDTNAVLFDRPS----GQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       224 ~~I~~~~~s~~~~~-l~sg~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iwd~~~~  297 (504)
                      .....++|++.++. +++-..++.|..+++..    ......+.........+++.+.+ ++.++-...+.|.+++....
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            35679999987654 45555678899999875    22222233233456889998644 44555567789999998753


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC--CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE-
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD--NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT-  374 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~-  374 (504)
                         .....+.........++++|.+..++.+...  +.|..+++..... ..+..    ..-.....+++++++..|+. 
T Consensus       110 ---~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~----~~~~~P~gla~d~~~~~lY~~  181 (316)
T 1ijq_A          110 ---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT----ENIQWPNGITLDLLSGRLYWV  181 (316)
T ss_dssp             ---SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEEC----SSCSCEEEEEEETTTTEEEEE
T ss_pred             ---ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEEE----CCCCCceEEEEeccCCEEEEE
Confidence               1222222233567899999977766665543  6888888865433 22221    11245789999987655554 


Q ss_pred             EeCCCcEEEEEcCCCceeeee-e--CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669          375 GTSEALVKIWDVKSQANVAKF-D--GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~~~~~-~--~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~  437 (504)
                      -...+.|..+|+... ....+ .  ........+++. .+.++++-...+ |..+|..+++....+.
T Consensus       182 D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          182 DSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             ETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             ECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            445679999998643 22222 2  122456788885 344444444445 9999987777665554

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.35  E-value=4.4e-07  Score=77.26  Aligned_cols=47  Identities=17%  Similarity=0.254  Sum_probs=42.6

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLTMD   48 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~   48 (504)
                      .|+|+.+.+.+||+.+.+||+|++.||++|+.. +.+||+++.++...
T Consensus        56 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  103 (165)
T 2ckl_B           56 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK  103 (165)
T ss_dssp             BCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred             CCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence            699999999999998569999999999999997 67899999998643

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.35  E-value=4.1e-07  Score=71.39  Aligned_cols=48  Identities=17%  Similarity=0.201  Sum_probs=44.1

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMD   48 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~   48 (504)
                      +.|+|+.+++.+||+...+||+|++.+|.+|+..+.+||+++.++...
T Consensus        16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            469999999999999845999999999999999988999999998865

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.35  E-value=6.8e-08  Score=71.19  Aligned_cols=52  Identities=21%  Similarity=0.377  Sum_probs=46.7

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh-------cCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-------YGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+.+.+||+.| +||+|++.+|.+|+..       ..+||+++.+++.++|.+-
T Consensus        13 ~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n   71 (79)
T 2egp_A           13 VTCPICLELLTEPLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN   71 (79)
T ss_dssp             CEETTTTEECSSCCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTC
T ss_pred             CCCcCCCcccCCeeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcC
Confidence            46999999999999996 9999999999999987       5679999999999887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.35  E-value=0.00013  Score=69.78  Aligned_cols=171  Identities=10%  Similarity=0.126  Sum_probs=101.7

Q ss_pred             CCCcEEEEeCCCCC-CcceeEEecc-----CCcCeEEEEEcc--CCC-EEEEEeC---CCeEEEEECCCCe-EEEEeecC
Q 010669          285 ADKTVRVWQGSEDG-NYDCKHTLKD-----HTAEVQAVTVHA--TNK-YFVTASL---DNTWCFYDLSSGI-CLTQVSDA  351 (504)
Q Consensus       285 ~dg~i~iwd~~~~~-~~~~~~~~~~-----h~~~v~~l~~~p--~~~-~l~s~s~---dg~i~iwd~~~~~-~~~~~~~~  351 (504)
                      .+|.|.++|..+.. ....+ .+.+     .......+.+.+  ++. +|+++..   +.+|.+|+++... ....+...
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~  159 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI  159 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence            68899999987421 11222 2222     234677888866  343 4544432   4577887765432 22212111


Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEe-----------------CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEE
Q 010669          352 GTDGRPEGYTSAAFHPDGLILGTGT-----------------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL  414 (504)
Q Consensus       352 ~~~~~~~~v~~~~~~pdg~~l~~g~-----------------~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  414 (504)
                       ....-...+.+.+.++|.++++..                 ..|.|..||.  ++ +..+...-...+.++|+||++.|
T Consensus       160 -~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~l  235 (355)
T 3sre_A          160 -RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYV  235 (355)
T ss_dssp             -CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEE
T ss_pred             -ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEE
Confidence             112234678999999999877754                 1245655655  32 22222233467899999999988


Q ss_pred             EEEeCC-c-EEEEEcCC-Ccc--eeeeecCCCCCCeeEEEECC-CCCEEEEEeCc
Q 010669          415 ATAAHD-G-VKLWDLRK-LKN--FRSFESSDSETPTNSVDFDH-SGSYLAVASAD  463 (504)
Q Consensus       415 ~s~~~d-~-v~vwd~~~-~~~--~~~~~~~~~~~~v~~i~~~~-~g~~l~~~~~d  463 (504)
                      +.+... . |..||+.. +..  ...+..   ....-.+++++ +|++.+++..+
T Consensus       236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEEEEESC
T ss_pred             EEEeCCCCeEEEEEECCCCcEecCEEEeC---CCCCceEEEeCCCCcEEEEecCC
Confidence            887655 3 99999863 222  223322   35678899999 59988877645

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.34  E-value=0.0011  Score=65.08  Aligned_cols=207  Identities=10%  Similarity=-0.012  Sum_probs=128.1

Q ss_pred             CCCeEEEEeccCCCEEE-EEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCC
Q 010669          223 KPGIVSLDIHYSKDVIA-TGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~-sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ...+..++|++.+..|+ +-...+.|+.+++...    .....+.........+++.+ .+++.++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            34678999998666554 4445678888887652    23333333445678899987 455555656778899998875


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      .   .....+.........|+++|.+.+|+.+..  .+.|...++..........     ..-.....+++++++..|+.
T Consensus       191 ~---~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~-----~~l~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          191 V---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-----ENIQWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             C---SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC-----SSCSCEEEEEEETTTTEEEE
T ss_pred             C---ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE-----CCCCceEEEEEEeCCCEEEE
Confidence            3   222222233345789999997776666653  3689999887554333322     11245789999986665555


Q ss_pred             E-eCCCcEEEEEcCCCceeeeeeC--CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec
Q 010669          375 G-TSEALVKIWDVKSQANVAKFDG--HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       375 g-~~dg~I~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~  438 (504)
                      + ...+.|..+|+...........  .......+++. .+.++++-...+ |..+|..+++.+..+..
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~  329 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE  329 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence            5 4567899999865433222222  23355677773 333444443444 99999878877666654

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.33  E-value=8.9e-07  Score=66.62  Aligned_cols=54  Identities=17%  Similarity=0.374  Sum_probs=48.0

Q ss_pred             CccccCCCCCCC----ceEeCCCCeeeeHHHHHHHHHhc---CCCCCCCCCCCCCccccccC
Q 010669            1 MNCSISGEVPEE----PVVSKNSGLLFEKRLIERHILDY---GKCPVTGEPLTMDDIVPIKT   55 (504)
Q Consensus         1 ~~c~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~   55 (504)
                      +.|+|+.+.+.+    |++.+ +||+|.+.+|.+|++.+   .+||++++++..+++..+..
T Consensus        16 ~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~   76 (88)
T 2ct2_A           16 LECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTD   76 (88)
T ss_dssp             CBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEE
T ss_pred             CCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHH
Confidence            469999999999    99996 99999999999999986   68999999999888766644

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.33  E-value=2.1e-05  Score=82.83  Aligned_cols=236  Identities=11%  Similarity=0.092  Sum_probs=131.3

Q ss_pred             eEEEEeccCCCEEEEEeC-CCcEEEEcCCCCceEEEcccCcc-ceeEEEEeeCCCEEEEEe-CC-----CcEEEEeCCCC
Q 010669          226 IVSLDIHYSKDVIATGGV-DTNAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLFLTGS-AD-----KTVRVWQGSED  297 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~s-~d-----g~i~iwd~~~~  297 (504)
                      ..++++..++.+++.|+. ++.+.+||..+.+-...-..+.. .-.+++..+++++++.|+ .+     ..+.+||..+.
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            345677789999999984 45799999877654332221211 123455567899988888 44     56899998763


Q ss_pred             CCcceeEEe--ccCCcCeEEEEEccCCCEEEEEeCCC---------eEEEEECCCCeEEEEeecCCC----CCCCCCeEE
Q 010669          298 GNYDCKHTL--KDHTAEVQAVTVHATNKYFVTASLDN---------TWCFYDLSSGICLTQVSDAGT----DGRPEGYTS  362 (504)
Q Consensus       298 ~~~~~~~~~--~~h~~~v~~l~~~p~~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~  362 (504)
                       .+..+...  ......-....+..++..++.++.+|         .+..||..+............    ......-.+
T Consensus       325 -~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~a  403 (656)
T 1k3i_A          325 -TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA  403 (656)
T ss_dssp             -EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred             -cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCce
Confidence             22221000  00000000011223455555565443         567888887764433221100    001112344


Q ss_pred             EEECC-CCCEEEEEeCCC-----------cEEEEEcCCCceeeee--eCCCCC-eEEEEEcCCCcEEEEEeCC-------
Q 010669          363 AAFHP-DGLILGTGTSEA-----------LVKIWDVKSQANVAKF--DGHVGA-VTAISFSENGYYLATAAHD-------  420 (504)
Q Consensus       363 ~~~~p-dg~~l~~g~~dg-----------~I~iwd~~~~~~~~~~--~~~~~~-i~~l~~s~~g~~l~s~~~d-------  420 (504)
                      +.|.. +++++++|+.++           .|.+||..+..-....  ..+... -.++...++|++++.|+.+       
T Consensus       404 v~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~  483 (656)
T 1k3i_A          404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED  483 (656)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             EeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence            55543 788889988543           6788888765433222  112222 2345667899999998743       


Q ss_pred             ----c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669          421 ----G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA  462 (504)
Q Consensus       421 ----~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~  462 (504)
                          . +.+||..+.+-...-.............+.++|++++.||.
T Consensus       484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                3 89999876543221111111223344567799999999985

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.30  E-value=9.3e-05  Score=76.37  Aligned_cols=218  Identities=17%  Similarity=0.195  Sum_probs=132.2

Q ss_pred             EEEEEe------CCCcEEEEcCCCCceEEEcccCccce-----------------------------------------e
Q 010669          237 VIATGG------VDTNAVLFDRPSGQIVTTLSGHSKKV-----------------------------------------T  269 (504)
Q Consensus       237 ~l~sg~------~dg~i~vwd~~~~~~~~~~~~h~~~v-----------------------------------------~  269 (504)
                      .+++++      .+|.|+.+|..+|+.+.........+                                         .
T Consensus       170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~  249 (582)
T 1flg_A          170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ  249 (582)
T ss_dssp             EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCS
T ss_pred             EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccC
Confidence            566654      37899999999998876553211000                                         1


Q ss_pred             EEEEeeCCCEEEEEeC--------------------C----CcEEEEeCCCCCCcceeEEec--cCC--------cCeEE
Q 010669          270 SVKFVTEGDLFLTGSA--------------------D----KTVRVWQGSEDGNYDCKHTLK--DHT--------AEVQA  315 (504)
Q Consensus       270 ~l~~s~~~~~l~s~s~--------------------d----g~i~iwd~~~~~~~~~~~~~~--~h~--------~~v~~  315 (504)
                      .+++.|+..+++.+..                    |    +.|..+|..++   +.+-.++  .|.        .++. 
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG---~~~W~~q~~~~d~wd~~~~~~p~l-  325 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG---EVKWFYQHTPNDAWDFSGNNELVL-  325 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC---CEEEEEESSTTCCSCCCCCCCCEE-
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC---CEEEEEeCCCCCcccccCCCCcEE-
Confidence            2456666666666553                    2    58999999886   3333332  232        1222 


Q ss_pred             EEEc-cCCC---EEEEEeCCCeEEEEECCCCeEEEEeecCCCC----------C-------------------CCC----
Q 010669          316 VTVH-ATNK---YFVTASLDNTWCFYDLSSGICLTQVSDAGTD----------G-------------------RPE----  358 (504)
Q Consensus       316 l~~~-p~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------~-------------------~~~----  358 (504)
                      +... .+|+   .++.++.+|.++++|.++|+.+.........          +                   ...    
T Consensus       326 ~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~  405 (582)
T 1flg_A          326 FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVS  405 (582)
T ss_dssp             EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEES
T ss_pred             EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEEC
Confidence            2221 4563   7888999999999999999988765432100          0                   000    


Q ss_pred             -------CeEEEEECCCCCEEEEEe---------------------------------CCCcEEEEEcCCCceeeeeeCC
Q 010669          359 -------GYTSAAFHPDGLILGTGT---------------------------------SEALVKIWDVKSQANVAKFDGH  398 (504)
Q Consensus       359 -------~v~~~~~~pdg~~l~~g~---------------------------------~dg~I~iwd~~~~~~~~~~~~~  398 (504)
                             .-..++++|+..++++..                                 .+|.|..||+.+++.+-+....
T Consensus       406 P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~  485 (582)
T 1flg_A          406 PPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH  485 (582)
T ss_dssp             SCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES
T ss_pred             cCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC
Confidence                   011456777655554432                                 2578999999999887666532


Q ss_pred             CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC-EEEEE
Q 010669          399 VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVA  460 (504)
Q Consensus       399 ~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~  460 (504)
                      . ++..-.+...+.+++.++.|+ ++.||.++++.+..+..... ....-+.|..+|+ |+++.
T Consensus       486 ~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g-~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          486 L-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG-IVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             S-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTEEEEEEE
T ss_pred             C-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC-cccCceEEEECCEEEEEEE
Confidence            2 222111122456777788888 99999999999988877421 1122356666775 55544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.29  E-value=0.00035  Score=65.38  Aligned_cols=201  Identities=9%  Similarity=0.120  Sum_probs=124.7

Q ss_pred             EEEEeccCCCEEEEEe-CCCcEEEEcCCCCceEEE-ccc----Cc--cceeEEEE---eeCCCEEEEEe-----------
Q 010669          227 VSLDIHYSKDVIATGG-VDTNAVLFDRPSGQIVTT-LSG----HS--KKVTSVKF---VTEGDLFLTGS-----------  284 (504)
Q Consensus       227 ~~~~~s~~~~~l~sg~-~dg~i~vwd~~~~~~~~~-~~~----h~--~~v~~l~~---s~~~~~l~s~s-----------  284 (504)
                      -+++|++....+..++ ..|+|..|+...+..... +.+    ..  ..+..|.|   .|+++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            3678988666666665 789999999876544333 322    11  13578999   57877776543           


Q ss_pred             --CCCcEEEEeCC---CCCCcceeEEeccC-----------CcCeEEEEEccCCCEEEEEeCC-CeEEEEECCCCeEEEE
Q 010669          285 --ADKTVRVWQGS---EDGNYDCKHTLKDH-----------TAEVQAVTVHATNKYFVTASLD-NTWCFYDLSSGICLTQ  347 (504)
Q Consensus       285 --~dg~i~iwd~~---~~~~~~~~~~~~~h-----------~~~v~~l~~~p~~~~l~s~s~d-g~i~iwd~~~~~~~~~  347 (504)
                        .+..|..||+.   ++.. .....+...           ......++..++|+..++++.. +.|..++.........
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~-~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~  174 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKP-VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTF  174 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCC-SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCE-EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeee
Confidence              26779999988   5422 112222211           1248899999999999999988 8888888775533222


Q ss_pred             eecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCce--eeeee--CC---CCCeEEE-EEcCCCcEEEEE-e
Q 010669          348 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--VAKFD--GH---VGAVTAI-SFSENGYYLATA-A  418 (504)
Q Consensus       348 ~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~--~~~~~--~~---~~~i~~l-~~s~~g~~l~s~-~  418 (504)
                      .............+.++++|+|.+|++....|.|..+|++....  +. ..  +.   -.....| ..-.+|+.|+++ +
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEEEcC
Confidence            21111112234578999999999888887799999999985432  11 11  21   1223443 333477774444 4


Q ss_pred             CCc-EEEEEcCC
Q 010669          419 HDG-VKLWDLRK  429 (504)
Q Consensus       419 ~d~-v~vwd~~~  429 (504)
                      ..+ +.+.+...
T Consensus       254 ~~~~~~l~S~Dg  265 (334)
T 2p9w_A          254 APYAISFRSWDN  265 (334)
T ss_dssp             TTEEEEEECSST
T ss_pred             CCCEEEEECCCC
Confidence            455 55555443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.29  E-value=0.00076  Score=63.84  Aligned_cols=205  Identities=8%  Similarity=-0.002  Sum_probs=126.0

Q ss_pred             CeEEEEeccCCC-EEEEEeCCCcEEEEcCCCCce-EEEcccCccceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCcc
Q 010669          225 GIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       225 ~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ...+++|++.+. ++.+-...+.|..++...+.. ...+...-.....+++.+ .+.++++-...+.|.++++....   
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---  112 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL---  112 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---
Confidence            366899998654 555555678899998876532 112222234567888887 44555555667889999987531   


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE-EEeCC
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSE  378 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~-~g~~d  378 (504)
                      ....+.........++++|.+..|+.+..  .+.|..+++..........     ..-.....+++++++..|. +-...
T Consensus       113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-----~~l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-----SEIYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-----SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-----CCCCCccEEEEeccCCEEEEEECCC
Confidence            11222233456789999997666666653  5788888887543222221     1123568999999655554 44567


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~  438 (504)
                      +.|..+|+..........+.......+++.. +.++.+-...+ |..+|..+++....+..
T Consensus       188 ~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          188 NFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             TEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence            8899999864332222232345667888853 33444433344 99999887876666544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.29  E-value=9.4e-05  Score=76.34  Aligned_cols=212  Identities=13%  Similarity=0.125  Sum_probs=129.4

Q ss_pred             CCCcEEEEcCCCCceEEEcccCccc-------------------------------------e-eEEEEeeCCCEEEEEe
Q 010669          243 VDTNAVLFDRPSGQIVTTLSGHSKK-------------------------------------V-TSVKFVTEGDLFLTGS  284 (504)
Q Consensus       243 ~dg~i~vwd~~~~~~~~~~~~h~~~-------------------------------------v-~~l~~s~~~~~l~s~s  284 (504)
                      .+|.|+.+|..+|+.+..+......                                     + ...++.+...+++.+.
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3799999999999988766532111                                     0 1345566667777776


Q ss_pred             CC----------------CcEEEEeCCCCCCcceeEEec--cCC--------cCeEEEEEc-cCC---CEEEEEeCCCeE
Q 010669          285 AD----------------KTVRVWQGSEDGNYDCKHTLK--DHT--------AEVQAVTVH-ATN---KYFVTASLDNTW  334 (504)
Q Consensus       285 ~d----------------g~i~iwd~~~~~~~~~~~~~~--~h~--------~~v~~l~~~-p~~---~~l~s~s~dg~i  334 (504)
                      .+                +.|..+|..++   +..-.++  .|.        .++. +... .+|   ..++.++.+|.+
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG---~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l  335 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTG---EAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIV  335 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTC---CEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCC---ceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEE
Confidence            55                37889999886   3333332  221        1222 2222 467   567788999999


Q ss_pred             EEEECCCCeEEEEeecCCCC--------CCCC--------------------------CeEEEEECCCCCEEEEEe----
Q 010669          335 CFYDLSSGICLTQVSDAGTD--------GRPE--------------------------GYTSAAFHPDGLILGTGT----  376 (504)
Q Consensus       335 ~iwd~~~~~~~~~~~~~~~~--------~~~~--------------------------~v~~~~~~pdg~~l~~g~----  376 (504)
                      +++|.++|+.+.........        ....                          .-..++++|+..++++..    
T Consensus       336 ~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~  415 (599)
T 1w6s_A          336 YTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHIC  415 (599)
T ss_dssp             EEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEE
T ss_pred             EEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccc
Confidence            99999999988766422100        0000                          012456777666555431    


Q ss_pred             -----------------------------------CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc
Q 010669          377 -----------------------------------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG  421 (504)
Q Consensus       377 -----------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~  421 (504)
                                                         .+|.|..||+.+++.+-+... ..+...-.+...+.+++.++.|+
T Consensus       416 ~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg  494 (599)
T 1w6s_A          416 MDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDG  494 (599)
T ss_dssp             EEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTS
T ss_pred             eeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCC
Confidence                                               347899999999988766642 11221111222566777788888


Q ss_pred             -EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC-EEEEE
Q 010669          422 -VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVA  460 (504)
Q Consensus       422 -v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~-~l~~~  460 (504)
                       ++.||.++++.+..+..... ....-+.|..+|+ |+++.
T Consensus       495 ~l~A~D~~tG~~lW~~~l~~g-~~~~P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          495 YLKARDSDTGDLLWKFKIPSG-AIGYPMTYTHKGTQYVAIY  534 (599)
T ss_dssp             EEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTEEEEEEE
T ss_pred             eEEEEECCCCCEEEEeeCCCC-cEeccEEEEeCCEEEEEEE
Confidence             99999999999988876421 1223355556665 45443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.28  E-value=0.0011  Score=62.93  Aligned_cols=231  Identities=7%  Similarity=0.047  Sum_probs=130.9

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc---cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS---GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY  300 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~  300 (504)
                      ..+.+|.|++ +..++ ++..|.|+. ....|+.-..+.   .+.+.+..+.+.+++..++.+ .+|.|.. ..+.+..+
T Consensus        80 ~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW  154 (327)
T 2xbg_A           80 YRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNW  154 (327)
T ss_dssp             CEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSE
T ss_pred             ccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCC
Confidence            3688899976 44444 455665544 333344433332   233557888887777666554 4565422 12233344


Q ss_pred             ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010669          301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL  380 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~  380 (504)
                      ....  ..+...+..+.+.+++.+++.+...+.++-+|- .+.....+..    .....+..+.+.+++.++++ +.+|.
T Consensus       155 ~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~-~~~G~  226 (327)
T 2xbg_A          155 QALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNR----TTSRRLHNMGFTPDGRLWMI-VNGGK  226 (327)
T ss_dssp             EEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEEC----CSSSCEEEEEECTTSCEEEE-ETTTE
T ss_pred             EEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCC----CCCCccceeEECCCCCEEEE-eCCce
Confidence            4332  345567899999998887776654443444442 1222222221    22356889999999887655 46788


Q ss_pred             EEEEEcCCCceeeeee-C---CCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecC-CCCCCeeEEEECCCCC
Q 010669          381 VKIWDVKSQANVAKFD-G---HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESS-DSETPTNSVDFDHSGS  455 (504)
Q Consensus       381 I~iwd~~~~~~~~~~~-~---~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~-~~~~~v~~i~~~~~g~  455 (504)
                      +++.+...++....+. +   +...+..+.+.+++.+++++..+.| ++....++....+... .....+.++.|.+++.
T Consensus       227 ~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~  305 (327)
T 2xbg_A          227 IAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ  305 (327)
T ss_dssp             EEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE
T ss_pred             EEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc
Confidence            8776433243333222 1   2235889999988887777664446 4555555554444321 1124578888875555


Q ss_pred             EEEEEeCcEEEEEe
Q 010669          456 YLAVASADIRVYQV  469 (504)
Q Consensus       456 ~l~~~~~di~vw~~  469 (504)
                       +++++.+..|+.+
T Consensus       306 -~~~~G~~G~i~~~  318 (327)
T 2xbg_A          306 -GFILGQKGILLRY  318 (327)
T ss_dssp             -EEEECSTTEEEEE
T ss_pred             -eEEEcCCceEEEE
Confidence             5555666556655

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.27  E-value=7.8e-05  Score=79.67  Aligned_cols=192  Identities=11%  Similarity=0.081  Sum_probs=111.5

Q ss_pred             ceeEEEEe-eCCCEEEEEe-CCC----cEEEEeCCCC-CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC-----CeE
Q 010669          267 KVTSVKFV-TEGDLFLTGS-ADK----TVRVWQGSED-GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTW  334 (504)
Q Consensus       267 ~v~~l~~s-~~~~~l~s~s-~dg----~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i  334 (504)
                      .+....|| |||++|+.+. .+|    +|+++|+.++ ...  ...+.   .....+.|+|||+.|+....|     ..|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l--~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI--ADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC--CCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC--Ccccc---CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            57889999 9999877443 333    5999999875 311  11111   113468899999888877665     268


Q ss_pred             EEEECCCCeE--EEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCc-ee--eee-eCCCCCeEEE
Q 010669          335 CFYDLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWDVKSQA-NV--AKF-DGHVGAVTAI  405 (504)
Q Consensus       335 ~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~---dg~I~iwd~~~~~-~~--~~~-~~~~~~i~~l  405 (504)
                      .++++.++..  ...+..    ........+.|+|||++|+....   ...|+++|+.++. ..  ..+ ........++
T Consensus       250 ~~~~lgt~~~~~~lv~~~----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~  325 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEE----HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV  325 (751)
T ss_dssp             EEEETTSCGGGCEEEEEC----CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred             EEEECCCCchhcEEEEec----CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence            8889887642  222221    11234568899999998887653   3468889998752 12  333 3344556667


Q ss_pred             EEcCCCcEEEEEeCC--c---EEEEEcCCCcceee-eecCCCCCCeeEEEECCCCCEEE-EEeCc--EEEEEe
Q 010669          406 SFSENGYYLATAAHD--G---VKLWDLRKLKNFRS-FESSDSETPTNSVDFDHSGSYLA-VASAD--IRVYQV  469 (504)
Q Consensus       406 ~~s~~g~~l~s~~~d--~---v~vwd~~~~~~~~~-~~~~~~~~~v~~i~~~~~g~~l~-~~~~d--i~vw~~  469 (504)
                      .|+.++.+++....+  +   |..+|+.+...... +..+.....+..+.+.  +..|+ +...+  .+||-+
T Consensus       326 ~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          326 QMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             EEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred             eeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence            666555555555543  2   77778765322222 2222212245556654  44554 44444  344443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=0.00091  Score=66.73  Aligned_cols=239  Identities=13%  Similarity=0.128  Sum_probs=136.3

Q ss_pred             CeEEEEeccC--CCEEEEEeCCCcEEEEcCCCCceEEEcccC---ccceeEEEE-------eeCCCEEEEEeCCC-----
Q 010669          225 GIVSLDIHYS--KDVIATGGVDTNAVLFDRPSGQIVTTLSGH---SKKVTSVKF-------VTEGDLFLTGSADK-----  287 (504)
Q Consensus       225 ~I~~~~~s~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h---~~~v~~l~~-------s~~~~~l~s~s~dg-----  287 (504)
                      ....|+|+|.  ++++++-...+.|++.|+.++.....+...   ......++|       +++++.|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983  445555544567888998877665544322   235899999       99999666666544     


Q ss_pred             --cEEEEeCCCCCCcce---eEEeccCCcCeEEEEEccCC-CEEEEEeCCCeEEEEECC-------CCeE----------
Q 010669          288 --TVRVWQGSEDGNYDC---KHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLS-------SGIC----------  344 (504)
Q Consensus       288 --~i~iwd~~~~~~~~~---~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~-------~~~~----------  344 (504)
                        .|.+++....+.+..   ...+... .....++++|++ .++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              256665444223220   0122111 234577889954 555556677889999997       5543          


Q ss_pred             -EEEeecCCCCCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcC--CCce--eeeeeCC---C------------CCeE
Q 010669          345 -LTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGTSEALVKIWDVK--SQAN--VAKFDGH---V------------GAVT  403 (504)
Q Consensus       345 -~~~~~~~~~~~~~~~v~~~~~~pdg~~l-~~g~~dg~I~iwd~~--~~~~--~~~~~~~---~------------~~i~  403 (504)
                       ...+...   ........++|+|+|++| ++-+..+.|+.+|..  .+..  ...+-+.   .            ....
T Consensus       299 ~~~~l~~~---~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~  375 (496)
T 3kya_A          299 TFKQLFTI---ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC  375 (496)
T ss_dssp             TEEEEEEC---SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred             ccceeEec---CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence             1121111   112346799999999954 444567889986653  2221  1222211   0            1244


Q ss_pred             -EEEEc-------CCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC----------------------CCCCeeEEEECC
Q 010669          404 -AISFS-------ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD----------------------SETPTNSVDFDH  452 (504)
Q Consensus       404 -~l~~s-------~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~----------------------~~~~v~~i~~~~  452 (504)
                       .++..       ++|.++++-..+. |+.++ .++. +.++-...                      .-.....|++++
T Consensus       376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~  453 (496)
T 3kya_A          376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD  453 (496)
T ss_dssp             EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred             EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence             45554       4555555444444 99998 3443 33443210                      013467899999


Q ss_pred             CCCEEEEEeC-c--EEEEEe
Q 010669          453 SGSYLAVASA-D--IRVYQV  469 (504)
Q Consensus       453 ~g~~l~~~~~-d--i~vw~~  469 (504)
                      ++..|+++.. +  |+.+++
T Consensus       454 ~~g~lyVaD~~N~rIrki~~  473 (496)
T 3kya_A          454 VKEMFYVHDQVGHTIRTISM  473 (496)
T ss_dssp             TTTEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEEC
Confidence            7444444544 3  777776

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.25  E-value=0.00049  Score=65.00  Aligned_cols=197  Identities=13%  Similarity=0.173  Sum_probs=125.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC----CC---EEEEEeC---CCeEEEEECC--CCe
Q 010669          276 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT----NK---YFVTASL---DNTWCFYDLS--SGI  343 (504)
Q Consensus       276 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~---~l~s~s~---dg~i~iwd~~--~~~  343 (504)
                      ...+++.....+-+.+||+..    +.+..+..  +.++.+..-|.    |+   ++++...   +++|.+|++.  ++.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G----~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~  112 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDG----KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTS----CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred             CccEEEEEcCCCCEEEEcCCC----cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence            344677677788899999943    55565543  56777777663    22   2333333   5789999773  443


Q ss_pred             EEEEeecC--CCCCCCCCeEEEEE--CCC-CC-EEEEEeCCCcEEEEEcC-------CCceeeeeeCCCCCeEEEEEcCC
Q 010669          344 CLTQVSDA--GTDGRPEGYTSAAF--HPD-GL-ILGTGTSEALVKIWDVK-------SQANVAKFDGHVGAVTAISFSEN  410 (504)
Q Consensus       344 ~~~~~~~~--~~~~~~~~v~~~~~--~pd-g~-~l~~g~~dg~I~iwd~~-------~~~~~~~~~~~~~~i~~l~~s~~  410 (504)
                       +..+...  ........+..+|+  +|. +. ++++...+|.+..|++.       +.+.+.+|.. .+.+..+...+.
T Consensus       113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~  190 (355)
T 3amr_A          113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE  190 (355)
T ss_dssp             -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred             -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence             4433210  00011145666777  774 44 67888889999999983       3355677763 457888899988


Q ss_pred             CcEEEEEeCCc-EEEEEcC-----CCcceeeeecCCCCCCeeEEEE--CCCCC-EEEEEeCc---EEEEEeeccCcccee
Q 010669          411 GYYLATAAHDG-VKLWDLR-----KLKNFRSFESSDSETPTNSVDF--DHSGS-YLAVASAD---IRVYQVASVKADWNC  478 (504)
Q Consensus       411 g~~l~s~~~d~-v~vwd~~-----~~~~~~~~~~~~~~~~v~~i~~--~~~g~-~l~~~~~d---i~vw~~~~~~~~~~~  478 (504)
                      ...|+.+-++. |..+|..     +.+.+..+........+..|++  .++++ ||++++..   ..||+..   ..++.
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~---~~~~~  267 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ---GKNKY  267 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS---TTCCE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC---CCCcE
Confidence            88899998885 8778855     2344444433222346888888  45566 77777643   9999972   25666


Q ss_pred             EEEcc
Q 010669          479 IKTFP  483 (504)
Q Consensus       479 i~~~~  483 (504)
                      +..|.
T Consensus       268 vg~f~  272 (355)
T 3amr_A          268 VADFR  272 (355)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77663

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.23  E-value=7.2e-07  Score=62.71  Aligned_cols=52  Identities=19%  Similarity=0.363  Sum_probs=44.3

Q ss_pred             CccccCCC-CCCCc----eEeCCCCeeeeHHHHHHHHHhc-CCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGE-VPEEP----VVSKNSGLLFEKRLIERHILDY-GKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+ ...+|    |++ .+||+|.+.+|++|+.++ .+||+++++++.+++++.
T Consensus         4 ~~C~IC~~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            4 QGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             TCCSTTTTHHHHCSSCCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CcCCcCCCCccCCCccCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            36999999 77777    456 599999999999998754 579999999999998765

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.21  E-value=9.7e-07  Score=75.57  Aligned_cols=52  Identities=35%  Similarity=0.483  Sum_probs=47.1

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+++.+||.++ +||+|++.+|.+|+...+ +||+++.+++.+++++.
T Consensus        19 ~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   71 (170)
T 3hcs_A           19 YECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD   71 (170)
T ss_dssp             GBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred             CCCCCCChhhcCcEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhh
Confidence            46999999999999995 999999999999999776 89999999998887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.19  E-value=0.00042  Score=66.72  Aligned_cols=226  Identities=10%  Similarity=0.025  Sum_probs=122.4

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce--EEEcc---cCccceeEEEEeeC---CCEEEEEeC-C-----CcEE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI--VTTLS---GHSKKVTSVKFVTE---GDLFLTGSA-D-----KTVR  290 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~---~h~~~v~~l~~s~~---~~~l~s~s~-d-----g~i~  290 (504)
                      .-..++|.|+|+++++ ..+|.|.+++  +++.  +..+.   ........++|+|+   +..|+.+.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4578999999996555 5669999998  3432  22221   22356889999998   444444433 2     5677


Q ss_pred             EEeCCCCC--Cccee-EEec---cCCcCeEEEEEccCCCEEEEEeC-------------CCeEEEEECCCCe--------
Q 010669          291 VWQGSEDG--NYDCK-HTLK---DHTAEVQAVTVHATNKYFVTASL-------------DNTWCFYDLSSGI--------  343 (504)
Q Consensus       291 iwd~~~~~--~~~~~-~~~~---~h~~~v~~l~~~p~~~~l~s~s~-------------dg~i~iwd~~~~~--------  343 (504)
                      .|+...+.  ..+.+ ..+.   ........++|.|+|.++++.+.             .|.|.-+|....-        
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            77765421  01111 1122   11112368999999976666432             2456666654310        


Q ss_pred             ----EEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcE------EEEEcCCCc------------------eeee
Q 010669          344 ----CLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALV------KIWDVKSQA------------------NVAK  394 (504)
Q Consensus       344 ----~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I------~iwd~~~~~------------------~~~~  394 (504)
                          ....+..    ++ .....++|+| +|.++++-...+.+      .|.-+..+.                  ++..
T Consensus       189 ~~~~~~~i~a~----G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~  263 (352)
T 2ism_A          189 RRGARPEVYSL----GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF  263 (352)
T ss_dssp             CTTSCTTEEEE----CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred             CCCCCccEEEE----cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence                0000000    11 2256789999 67766654433331      122222221                  2223


Q ss_pred             eeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcc------eeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669          395 FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN------FRSFESSDSETPTNSVDFDHSGSYLAVASA  462 (504)
Q Consensus       395 ~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~------~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~  462 (504)
                      +. +......++| .+|.++++.-..+ |...++.....      ...+..  ....+..+++.|||.+.++...
T Consensus       264 ~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          264 WP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             CT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEECS
T ss_pred             cC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEeC
Confidence            32 2335677888 4676665554455 87777764431      122211  1357899999999987776543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.16  E-value=1.3e-05  Score=84.59  Aligned_cols=240  Identities=8%  Similarity=-0.049  Sum_probs=131.6

Q ss_pred             CCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEE-eCCCcEEEEeCCCCCC-cceeEEeccCCcCeEEEEEccC
Q 010669          244 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHAT  321 (504)
Q Consensus       244 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~p~  321 (504)
                      .+.|++.++...+....+.. ...+..++|++.+..|+.+ ...+.|+.+++..... ......+.........|++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            45678888876655444433 3457789999866655554 4567899998865100 0111111111223456788754


Q ss_pred             C-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CC-CcEEEEEcCCCceeeeeeCC
Q 010669          322 N-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SE-ALVKIWDVKSQANVAKFDGH  398 (504)
Q Consensus       322 ~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~d-g~I~iwd~~~~~~~~~~~~~  398 (504)
                      + +++++-...+.|.++++........+.     ........++++|.+..|+... .. +.|.++++........+...
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-----~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~  538 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFR-----EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  538 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECC-----CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEe-----CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC
Confidence            4 444444557889999988654433332     1113457789999655444433 22 78888877533222122222


Q ss_pred             CCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeec-CCCCCCeeEEEECCCCCEEEEEeCc---EEEEEeecc
Q 010669          399 VGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASV  472 (504)
Q Consensus       399 ~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~-~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~  472 (504)
                      -...+.|+|++++..|+.+... . |.++|+.... ...+.. .........|+++.+  .|+.....   |..++.   
T Consensus       539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~---  612 (699)
T 1n7d_A          539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANR---  612 (699)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEET---
T ss_pred             CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEc---
Confidence            3456789999976666666544 4 9999986432 222221 111233455666544  45544433   666664   


Q ss_pred             CccceeEEEccCCCCCCceeEEEEee
Q 010669          473 KADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       473 ~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                       .+++.+..+...  ....++|.++.
T Consensus       613 -~~G~~~~~i~~~--~~~P~~i~v~~  635 (699)
T 1n7d_A          613 -LTGSDVNLLAEN--LLSPEDMVLFH  635 (699)
T ss_dssp             -TTEEEEECCCTT--CSSCCCCCBCS
T ss_pred             -cCCCceEEeecC--CCCCcEEEEeC
Confidence             456666666432  23455555553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.15  E-value=0.0015  Score=61.05  Aligned_cols=239  Identities=13%  Similarity=0.166  Sum_probs=123.3

Q ss_pred             CCCEEEEEe-CC-----CcEEEEcCCCCceEEEcccC-ccceeEEEEeeCCCEEEEEeCC-----CcEEEEeCCCCCC--
Q 010669          234 SKDVIATGG-VD-----TNAVLFDRPSGQIVTTLSGH-SKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDGN--  299 (504)
Q Consensus       234 ~~~~l~sg~-~d-----g~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~s~d-----g~i~iwd~~~~~~--  299 (504)
                      ++.+++.|+ .+     ..+.+||..+.+-.. +... .......+...++.+++.|+.+     ..+.+||..+...  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence            345666666 32     368889987765322 2211 1111111222367777777755     4688999877421  


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      +..+..+.........+.+  ++..++.|+.+     ..+.+||+.+.+-...-...   .......++.+  ++++++.
T Consensus        93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~--~~~iyv~  165 (301)
T 2vpj_A           93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ---TAREGAGLVVA--SGVIYCL  165 (301)
T ss_dssp             CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS---SCCBSCEEEEE--TTEEEEE
T ss_pred             eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC---CCcccceEEEE--CCEEEEE
Confidence            4443333222222222222  57777777654     36889999887644332211   11112222222  6778888


Q ss_pred             EeCC-----CcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCCcEEEEEeCC------cEEEEEcCCCcceeeeecCCC
Q 010669          375 GTSE-----ALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSDS  441 (504)
Q Consensus       375 g~~d-----g~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s~~~d------~v~vwd~~~~~~~~~~~~~~~  441 (504)
                      |+.+     ..+.+||+.+.+-  +..+.........+.+  ++.+++.|+.+      .+.+||+.+.+-...-.....
T Consensus       166 GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~  243 (301)
T 2vpj_A          166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP  243 (301)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred             CCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence            8754     4688999876532  2222211112223333  67777777653      289999987653222111111


Q ss_pred             CCCeeEEEECCCCCEEEEEeCc-----EEEEEeeccCccceeEEEccC
Q 010669          442 ETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       442 ~~~v~~i~~~~~g~~l~~~~~d-----i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      ......+.+  ++.+++.|+.+     -.+|.++.....|..+..++.
T Consensus       244 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~  289 (301)
T 2vpj_A          244 RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGT  289 (301)
T ss_dssp             CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEE
T ss_pred             ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCc
Confidence            112222333  56677777643     234444444577988876653

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.14  E-value=2.3e-06  Score=59.68  Aligned_cols=40  Identities=25%  Similarity=0.366  Sum_probs=35.2

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhc---CCCCCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY---GKCPVT   41 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~   41 (504)
                      +.|+|+.+.+.+||+.| +||+|.+.+|++|++.+   .+||++
T Consensus        21 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           21 VICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CBCTTTCSBCSSCEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CCCCcCCchhCCeEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            46999999999999995 99999999999999953   368874

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.13  E-value=1.6e-06  Score=61.83  Aligned_cols=44  Identities=18%  Similarity=0.394  Sum_probs=40.1

Q ss_pred             ccccCCCCCCCc-------eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEP-------VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   46 (504)
                      .|+|+.+.+.+|       ++. .+||+|.+.+|.+|+..+.+||+++.+++
T Consensus        17 ~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           17 SCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             CCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            599999998887       777 49999999999999999999999999876

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.11  E-value=0.0019  Score=68.83  Aligned_cols=204  Identities=9%  Similarity=-0.043  Sum_probs=123.9

Q ss_pred             CCeEEEEeccCCC-EEEEEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCC
Q 010669          224 PGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       224 ~~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~  297 (504)
                      ..+..++|++.+. ++++-...+.|+.+++...    .....+.........|++.+.+. ++++-...+.|.+.++...
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence            4567888888554 4455555677888887642    22333333445677899987664 4555566789999998753


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                         .....+.........|+++|.+.+|+.+..  .+.|...++........+.     ..-.....|++++.+..|+.+
T Consensus       504 ---~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-----~~l~~P~GLavD~~~~~LYwa  575 (791)
T 3m0c_C          504 ---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-----ENIQWPNGITLDLLSGRLYWV  575 (791)
T ss_dssp             ---SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-----SSCSCEEEEEEETTTTEEEEE
T ss_pred             ---eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-----CCCCCceEEEEecCCCeEEEE
Confidence               222222233345889999998776666653  2689999987654433332     112467899999865555544


Q ss_pred             -eCCCcEEEEEcCCCceeeeeeC--CCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeee
Q 010669          376 -TSEALVKIWDVKSQANVAKFDG--HVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       376 -~~dg~I~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~  437 (504)
                       ...+.|..+|+........+..  .-.....|++.  +.+|+..... + |...|..+++.+..+.
T Consensus       576 D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          576 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence             4567899999865433333332  12345567764  3355555544 4 8888877776555543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.11  E-value=0.0039  Score=58.40  Aligned_cols=234  Identities=12%  Similarity=0.108  Sum_probs=121.9

Q ss_pred             CEEEEEeC--CCcEEEEcCCCCceEEE--cccCccceeEEEEeeCCCEEEEEeCC----CcEEEEeCCCCCCcceeEEec
Q 010669          236 DVIATGGV--DTNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSAD----KTVRVWQGSEDGNYDCKHTLK  307 (504)
Q Consensus       236 ~~l~sg~~--dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~  307 (504)
                      .+++.|+.  ...+.+||..+++-...  +......-..+.  -++.+++.|+.+    ..+.+||..+. .+..+..+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKD-SWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTT-EEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCC-eEEECCCCC
Confidence            35555654  35688899877653321  111111112222  367777777754    56888998773 343333332


Q ss_pred             cCCcCeEEEEEccCCCEEEEEeCC------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC----
Q 010669          308 DHTAEVQAVTVHATNKYFVTASLD------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS----  377 (504)
Q Consensus       308 ~h~~~v~~l~~~p~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~----  377 (504)
                      ........+.+  ++..++.|+.+      ..+.+||..+..-...-.   .........++.+  ++.+++.|+.    
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~  162 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS---MLTQRCSHGMVEA--NGLIYVCGGSLGNN  162 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE--TTEEEEECCEESCT
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC---CcCCcceeEEEEE--CCEEEEECCCCCCC
Confidence            21122222222  67777777765      458999998876443321   1111112222222  6677777764    


Q ss_pred             -----CCcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC------cEEEEEcCCCcceeeeecCCCCCC
Q 010669          378 -----EALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSDSETP  444 (504)
Q Consensus       378 -----dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d------~v~vwd~~~~~~~~~~~~~~~~~~  444 (504)
                           -..+.+||+.+.+  .+..+......-..+.+  ++++++.|+.+      .+.+||+.+.+-...-..+.....
T Consensus       163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~  240 (306)
T 3ii7_A          163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT  240 (306)
T ss_dssp             TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred             CcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence                 3458899987763  22222211112222333  66777776542      389999987542221111111122


Q ss_pred             eeEEEECCCCCEEEEEeCc-------EEEEEeeccCccceeEEEccCC
Q 010669          445 TNSVDFDHSGSYLAVASAD-------IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       445 v~~i~~~~~g~~l~~~~~d-------i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                      ...+.+  ++.+++.|+.+       +.+||.  ....|..+..++..
T Consensus       241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~  284 (306)
T 3ii7_A          241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNT--ETDKWVANSKVRAF  284 (306)
T ss_dssp             CEEEEE--TTEEEEEECBCSSSBCCEEEEEET--TTTEEEEEEEEECC
T ss_pred             eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC--CCCeEEeCCCcccc
Confidence            233333  66777777742       555554  45779998877643

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.07  E-value=7.9e-07  Score=70.82  Aligned_cols=50  Identities=24%  Similarity=0.381  Sum_probs=44.1

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVP   52 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~   52 (504)
                      +.|+|+.+++.+||+.+.+||+|++.+|.+|+.  .+||+++.++...+|.+
T Consensus        23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~   72 (117)
T 1jm7_B           23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKI   72 (117)
T ss_dssp             TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCC
T ss_pred             CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccc
Confidence            469999999999999844999999999999998  78999999987766643

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.07  E-value=3.4e-06  Score=61.71  Aligned_cols=51  Identities=20%  Similarity=0.234  Sum_probs=44.2

Q ss_pred             ccccCCCCCCCc---eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            2 NCSISGEVPEEP---VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         2 ~c~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      .|+|+.+.+.+|   ++.| +||+|.+.+|.+|++.+.+||+++.+++..++.+.
T Consensus        17 ~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           17 ECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             CCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred             CCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence            599999887765   4454 99999999999999999999999999998888665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.05  E-value=0.0042  Score=59.67  Aligned_cols=227  Identities=13%  Similarity=0.069  Sum_probs=124.5

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc-eEEEcc---cCccceeEEEEeeC---CCEEEEEeC----C----CcE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-IVTTLS---GHSKKVTSVKFVTE---GDLFLTGSA----D----KTV  289 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~---~h~~~v~~l~~s~~---~~~l~s~s~----d----g~i  289 (504)
                      .-..++|.|+|+++++ ..+|.|++++. +++ .+..+.   ........|+|+|+   +..|+.+..    +    +.|
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            4678999999985554 56699999973 454 222221   22345889999997   444444432    2    567


Q ss_pred             EEEeCCCCC-Cc---cee-EEec-cCCcCeEEEEEccCCCEEEEEeC-------------CCeEEEEECCCC--------
Q 010669          290 RVWQGSEDG-NY---DCK-HTLK-DHTAEVQAVTVHATNKYFVTASL-------------DNTWCFYDLSSG--------  342 (504)
Q Consensus       290 ~iwd~~~~~-~~---~~~-~~~~-~h~~~v~~l~~~p~~~~l~s~s~-------------dg~i~iwd~~~~--------  342 (504)
                      ..|+..... ..   +.+ ..+. ........+.|.|+|.++++.+.             .|.|.-++....        
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~  187 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP  187 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence            777765421 11   111 1122 11112467999999987766432             245555555421        


Q ss_pred             -eEEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCC---cEEEEEcCC--------C--------ceeeeeeCCCCC
Q 010669          343 -ICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEA---LVKIWDVKS--------Q--------ANVAKFDGHVGA  401 (504)
Q Consensus       343 -~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg---~I~iwd~~~--------~--------~~~~~~~~~~~~  401 (504)
                       ..+...      ++ .....++|+| +|.++++-...+   .|.+.....        +        .++..+......
T Consensus       188 ~~~i~a~------G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a  260 (354)
T 3a9g_A          188 NSPIWSY------GH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWA  260 (354)
T ss_dssp             TCCEEEE------CC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred             CCcEEEE------cc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence             011111      11 2346799999 677666543322   233322100        0        122333112346


Q ss_pred             eEEEEEc-------CCCcEEEEEeCCc-EEEEEcCCC-cce--eeeecCCCCCCeeEEEECCCCCEEEEEe
Q 010669          402 VTAISFS-------ENGYYLATAAHDG-VKLWDLRKL-KNF--RSFESSDSETPTNSVDFDHSGSYLAVAS  461 (504)
Q Consensus       402 i~~l~~s-------~~g~~l~s~~~d~-v~vwd~~~~-~~~--~~~~~~~~~~~v~~i~~~~~g~~l~~~~  461 (504)
                      ...++|.       .+|.++++.-..+ |...++... ...  ..+.. .....+..+++.|||.+.++..
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-NVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-TTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-CCCCCeeEEEECCCCcEEEEEe
Confidence            7888884       4676666655555 888888753 221  12211 1135789999999997666654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.04  E-value=5.6e-06  Score=58.67  Aligned_cols=45  Identities=24%  Similarity=0.314  Sum_probs=40.7

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   46 (504)
                      .|+|+.+.+.+|++...+||+|.+.+|.+|++.+.+||+++.+++
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            599999999998555469999999999999999999999999886

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.00  E-value=1.3e-06  Score=71.72  Aligned_cols=49  Identities=12%  Similarity=0.145  Sum_probs=43.0

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCCCCCCCcc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGEPLTMDDI   50 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~   50 (504)
                      +.|+|+.+++.+||.++ +||+|++.+|.+|+...+ +||+++.++..++.
T Consensus        32 ~~C~IC~~~~~~pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   81 (141)
T 3knv_A           32 YLCSACRNVLRRPFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYEEG   81 (141)
T ss_dssp             GBCTTTCSBCSSEEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTT
T ss_pred             cCCCCCChhhcCcEECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccccc
Confidence            46999999999999995 999999999999998776 79999988766543

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=97.99  E-value=4.5e-06  Score=56.33  Aligned_cols=46  Identities=13%  Similarity=0.272  Sum_probs=41.0

Q ss_pred             ccccCCCCCCC---ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCC
Q 010669            2 NCSISGEVPEE---PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTM   47 (504)
Q Consensus         2 ~c~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   47 (504)
                      .|+|+.+.+.+   +++.|.+||+|.+.+|.+|++.+.+||+++.++.+
T Consensus         7 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~v   55 (55)
T 1iym_A            7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV   55 (55)
T ss_dssp             CCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSCC
T ss_pred             cCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeEC
Confidence            59999998777   78777799999999999999999999999988763

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.99  E-value=3.1e-06  Score=69.15  Aligned_cols=54  Identities=19%  Similarity=0.362  Sum_probs=48.9

Q ss_pred             CccccCCCCCCCc-------eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccccC
Q 010669            1 MNCSISGEVPEEP-------VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKT   55 (504)
Q Consensus         1 ~~c~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~   55 (504)
                      +.|+|+.+.+.+|       |+. .+||+|.+.+|.+|++.+.+||+++++++..++.++..
T Consensus         8 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i   68 (133)
T 4ap4_A            8 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI   68 (133)
T ss_dssp             CBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBC
T ss_pred             CCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccccc
Confidence            4699999999998       777 59999999999999999999999999999999988743

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.93  E-value=0.0037  Score=58.44  Aligned_cols=163  Identities=12%  Similarity=0.173  Sum_probs=107.9

Q ss_pred             CccceeEEEEeeCCCEEEEEe-CCCcEEEEeCCCCCCcceeEEecc----CC--cCeEEEEE---ccCCCEEEEEeC---
Q 010669          264 HSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHTLKD----HT--AEVQAVTV---HATNKYFVTASL---  330 (504)
Q Consensus       264 h~~~v~~l~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~----h~--~~v~~l~~---~p~~~~l~s~s~---  330 (504)
                      ...---++.|++....|..++ ..|+|..||...+. ...+ .+.+    ..  ..+..+.|   .|++.++++...   
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-HFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC-EEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe-EEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence            334456789987555555555 79999999987532 1122 2322    11  13589999   688777775442   


Q ss_pred             ----------CCeEEEEECC---CCeEEEEeecCCCC-C-------CCCCeEEEEECCCCCEEEEEeCC-CcEEEEEcCC
Q 010669          331 ----------DNTWCFYDLS---SGICLTQVSDAGTD-G-------RPEGYTSAAFHPDGLILGTGTSE-ALVKIWDVKS  388 (504)
Q Consensus       331 ----------dg~i~iwd~~---~~~~~~~~~~~~~~-~-------~~~~v~~~~~~pdg~~l~~g~~d-g~I~iwd~~~  388 (504)
                                +..+..||+.   +++.+......... +       .......++..++|+..++++.. +.|..++...
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence                      6789999999   77766554311000 0       11357899999999999999888 8887777643


Q ss_pred             Cceeeeee------CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCC
Q 010669          389 QANVAKFD------GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK  429 (504)
Q Consensus       389 ~~~~~~~~------~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~  429 (504)
                      . .+..+.      ......+.|+++|+|+.|++....+ +..+|+.+
T Consensus       169 ~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          169 K-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             C-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             C-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            3 333221      1122477999999999888887777 99999884

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.92  E-value=0.0051  Score=57.72  Aligned_cols=237  Identities=10%  Similarity=0.138  Sum_probs=122.5

Q ss_pred             ccCCCEEEEEeCC----CcEEEEcCCCCceEEEcccC-ccc-eeEEEEeeCCCEEEEEeC----C-----CcEEEEeCCC
Q 010669          232 HYSKDVIATGGVD----TNAVLFDRPSGQIVTTLSGH-SKK-VTSVKFVTEGDLFLTGSA----D-----KTVRVWQGSE  296 (504)
Q Consensus       232 s~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~h-~~~-v~~l~~s~~~~~l~s~s~----d-----g~i~iwd~~~  296 (504)
                      .-++.+++.|+.+    ..+.+||..+.+-.. +... ... -.+++ .-++.+++.|+.    +     ..+.+||..+
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            3456777777742    368889987665332 2111 111 11222 226677777765    2     4678888876


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI  371 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~  371 (504)
                      . .+..+..+.........+.+  ++..++.|+.+     ..+.+||+.+.+-...-.   .........++.+  ++.+
T Consensus       100 ~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~--~~~i  171 (308)
T 1zgk_A          100 N-QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP---MLTRRIGVGVAVL--NRLL  171 (308)
T ss_dssp             T-EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC---CSSCCBSCEEEEE--TTEE
T ss_pred             C-eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC---CCccccceEEEEE--CCEE
Confidence            3 33333222221112222222  56777777643     358899998875433221   1111122223333  6778


Q ss_pred             EEEEeCC-----CcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCCcEEEEEeCC-----c-EEEEEcCCCcceeeeec
Q 010669          372 LGTGTSE-----ALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       372 l~~g~~d-----g~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-----~-v~vwd~~~~~~~~~~~~  438 (504)
                      ++.|+.+     ..+.+||+.+.+-  +..+......-..+.+  ++.+++.|+.+     . +.+||+.+.+-...-..
T Consensus       172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  249 (308)
T 1zgk_A          172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM  249 (308)
T ss_dssp             EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred             EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence            8887754     4588999876532  2122211122233333  67777777643     3 89999987543221111


Q ss_pred             CCCCCCeeEEEECCCCCEEEEEeCc-------EEEEEeeccCccceeEEEccC
Q 010669          439 SDSETPTNSVDFDHSGSYLAVASAD-------IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       439 ~~~~~~v~~i~~~~~g~~l~~~~~d-------i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      .........+.+  ++.+++.|+.+       +.+||.  ....|..+..++.
T Consensus       250 p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p~  298 (308)
T 1zgk_A          250 KHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDP--DTDTWSEVTRMTS  298 (308)
T ss_dssp             SSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET--TTTEEEEEEECSS
T ss_pred             CCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcC--CCCEEeecCCCCC
Confidence            111112222222  56677777643       555555  4578998877654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.92  E-value=0.022  Score=59.15  Aligned_cols=219  Identities=10%  Similarity=0.034  Sum_probs=132.1

Q ss_pred             EEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCCcceeEEeccCCcCeE
Q 010669          237 VIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ  314 (504)
Q Consensus       237 ~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  314 (504)
                      +|+.+ ....|+..++.+......+. ..-..+..++|++.+..|+ +-..++.|..+++....   ....+........
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~---~~~v~~~g~~~P~   83 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA---LEHVVEFGLDYPE   83 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSCCC
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC---cEEEEeCCCCCcc
Confidence            44443 45678888887665433332 2234688999998655554 55567889888886532   2222222224567


Q ss_pred             EEEEccCCCEEEE-EeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC-CCEEEEE-eCCCcEEEEEcCCCce
Q 010669          315 AVTVHATNKYFVT-ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-GLILGTG-TSEALVKIWDVKSQAN  391 (504)
Q Consensus       315 ~l~~~p~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd-g~~l~~g-~~dg~I~iwd~~~~~~  391 (504)
                      .+++.+.+..|+. -...+.|.+.++........+. .    .-.....++++|. |.++.+- +..+.|...++.....
T Consensus        84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~----~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~  158 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-K----DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER  158 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-S----SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-C----CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce
Confidence            8888876555544 4456789999987654322221 1    1235789999995 5444443 2357888888754433


Q ss_pred             eeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEE
Q 010669          392 VAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQ  468 (504)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~  468 (504)
                       ..+...-...+.|++++++..|+.+... + |..+|+..... ..+...  ......+++..  ..|+..... -.|+.
T Consensus       159 -~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~--~~ly~tD~~~~~I~~  232 (628)
T 4a0p_A          159 -TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ--DYIYWTDWSRRSIER  232 (628)
T ss_dssp             -EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET--TEEEEEETTTTEEEE
T ss_pred             -EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC--CEEEEecCCCCEEEE
Confidence             2332344578899999987777777665 4 99999875433 333222  23456788764  456655544 44444


Q ss_pred             ee
Q 010669          469 VA  470 (504)
Q Consensus       469 ~~  470 (504)
                      ++
T Consensus       233 ~d  234 (628)
T 4a0p_A          233 AN  234 (628)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=0.00044  Score=68.57  Aligned_cols=152  Identities=14%  Similarity=0.167  Sum_probs=97.3

Q ss_pred             ceeEEEEee-CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC-C----eEEEEECC
Q 010669          267 KVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-N----TWCFYDLS  340 (504)
Q Consensus       267 ~v~~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-g----~i~iwd~~  340 (504)
                      ....++|+| ++..|+.+...+.|+.+|....    .+..+.........++|++++++|+++... +    .+.+++..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~----~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE----YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT----EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC----EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            457899997 3555666655588999998763    233333344568899999999966666542 2    34444433


Q ss_pred             CCeE-EEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeee-CCCCCeEEEEEcCCCcEEEEE
Q 010669          341 SGIC-LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSENGYYLATA  417 (504)
Q Consensus       341 ~~~~-~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~  417 (504)
                      .... ...+..      ......++++| +|.++++-..++.|..||...+.....+. +.......++|+|+|.+|+.+
T Consensus       214 g~~~~~~~l~~------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~  287 (430)
T 3tc9_A          214 SGFKVITELTK------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV  287 (430)
T ss_dssp             GTSCSEEEEEE------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred             Cceeeeeeecc------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence            2211 112211      12456788999 78877777788999999987665422222 122457899999999977666


Q ss_pred             eCC-c-EEEEEcC
Q 010669          418 AHD-G-VKLWDLR  428 (504)
Q Consensus       418 ~~d-~-v~vwd~~  428 (504)
                      ... . |..++..
T Consensus       288 d~~~~~I~~~~~d  300 (430)
T 3tc9_A          288 VVNQHYILRSDYD  300 (430)
T ss_dssp             ETTTTEEEEEEEE
T ss_pred             ECCCCEEEEEeCC
Confidence            554 4 8888765

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=97.92  E-value=1.2e-05  Score=54.25  Aligned_cols=44  Identities=23%  Similarity=0.368  Sum_probs=38.3

Q ss_pred             ccccCCCCCCC----ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 010669            2 NCSISGEVPEE----PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   46 (504)
                      .|+|+.+.+.+    +++. .+||+|.+.+|.+|++.+.+||+++.++.
T Consensus         7 ~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            7 GCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             SCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             cCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            59999998755    5666 59999999999999999999999998764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.90  E-value=0.0033  Score=60.01  Aligned_cols=195  Identities=14%  Similarity=0.180  Sum_probs=117.7

Q ss_pred             CeEEEEeccCCCEEEEEe------------CCCcEEEEcCCCC-ceEEEc--cc-----CccceeEEEEee--CCC-EEE
Q 010669          225 GIVSLDIHYSKDVIATGG------------VDTNAVLFDRPSG-QIVTTL--SG-----HSKKVTSVKFVT--EGD-LFL  281 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~------------~dg~i~vwd~~~~-~~~~~~--~~-----h~~~v~~l~~s~--~~~-~l~  281 (504)
                      +.-.+...++|..+++++            .+|.|.++|..+. .....+  .+     ..-....+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            445666788776555542            6899999998732 112222  22     223567788766  354 344


Q ss_pred             EEe-C--CCcEEEEeCCCCCC-cceeEEeccC-CcCeEEEEEccCCCEEEEEeC-----------------CCeEEEEEC
Q 010669          282 TGS-A--DKTVRVWQGSEDGN-YDCKHTLKDH-TAEVQAVTVHATNKYFVTASL-----------------DNTWCFYDL  339 (504)
Q Consensus       282 s~s-~--dg~i~iwd~~~~~~-~~~~~~~~~h-~~~v~~l~~~p~~~~l~s~s~-----------------dg~i~iwd~  339 (504)
                      .+. .  +.+|.+|++..++. ...+..+.+. -...+++.+.++|.++++...                 .|.|..+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            442 2  56788888765432 2333344332 235789999999988777641                 245666665


Q ss_pred             CCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCC-Cce--eeeeeCCCCCeEEEEEcC-CCcEE
Q 010669          340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKS-QAN--VAKFDGHVGAVTAISFSE-NGYYL  414 (504)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~-~~~--~~~~~~~~~~i~~l~~s~-~g~~l  414 (504)
                      .  +.......      -...+.++|+||++.|+++. ..+.|..||+.. ++.  ...+. ..+....+++.+ +|.+.
T Consensus       211 ~--~~~~~~~~------l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lw  281 (355)
T 3sre_A          211 N--DVRVVAEG------FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLW  281 (355)
T ss_dssp             T--CCEEEEEE------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEE
T ss_pred             C--eEEEeecC------CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEE
Confidence            3  22211111      13468999999998776664 568999999863 322  22332 346678899999 59988


Q ss_pred             EEEeCCc--EEEEEcC
Q 010669          415 ATAAHDG--VKLWDLR  428 (504)
Q Consensus       415 ~s~~~d~--v~vwd~~  428 (504)
                      +++..++  |..||..
T Consensus       282 va~~~~g~~v~~~~P~  297 (355)
T 3sre_A          282 VGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEESCHHHHHSCCTT
T ss_pred             EEecCCceEEEEECCC
Confidence            8776564  5555544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.89  E-value=0.0013  Score=65.22  Aligned_cols=151  Identities=13%  Similarity=0.125  Sum_probs=93.1

Q ss_pred             ceeEEEEeeC--CCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC-----eEEEEEC
Q 010669          267 KVTSVKFVTE--GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-----TWCFYDL  339 (504)
Q Consensus       267 ~v~~l~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-----~i~iwd~  339 (504)
                      ....++|+|+  +..|+.+...+.|+.+|..++    .+..+........+++++++|+ |+.+...+     .+..++.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g----~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ----YVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT----EEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCC----EEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence            4578999984  344555544488999998663    2333334445689999999999 44444321     2333333


Q ss_pred             CCCeE-EEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeee-e-CCCCCeEEEEEcCCCcEEE
Q 010669          340 SSGIC-LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKF-D-GHVGAVTAISFSENGYYLA  415 (504)
Q Consensus       340 ~~~~~-~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~~~~~-~-~~~~~i~~l~~s~~g~~l~  415 (504)
                      ..+.. ...+.      .......++++| +|.++++-..++.|+.+|..++.....+ . +....-..++|+|+|.+|+
T Consensus       215 ~~~~~~~~~~~------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY  288 (433)
T 4hw6_A          215 ASGFTERLSLC------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY  288 (433)
T ss_dssp             GGTTCCEEEEE------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred             CCCeecccccc------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE
Confidence            22211 01111      012356788999 7777777667889999999877652222 2 1122345799999999776


Q ss_pred             EEeCC-c-EEEEEcC
Q 010669          416 TAAHD-G-VKLWDLR  428 (504)
Q Consensus       416 s~~~d-~-v~vwd~~  428 (504)
                      .+... . |+.+++.
T Consensus       289 vad~~~~~I~~~~~d  303 (433)
T 4hw6_A          289 IIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEETTTTEEEEEEBC
T ss_pred             EEeCCCCEEEEEeCC
Confidence            66655 4 9988865

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.89  E-value=7.9e-06  Score=60.07  Aligned_cols=49  Identities=16%  Similarity=0.297  Sum_probs=42.2

Q ss_pred             ccccCCCCCCC--------------ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCcc
Q 010669            2 NCSISGEVPEE--------------PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDI   50 (504)
Q Consensus         2 ~c~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~   50 (504)
                      .|+|+.+.+.+              +++.+.+||+|-+.+|.+|++.+.+||+++.++...++
T Consensus        17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~   79 (81)
T 2ecl_A           17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRI   79 (81)
T ss_dssp             CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEEE
T ss_pred             CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhhc
Confidence            48888888766              66776799999999999999999999999999876653

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.89  E-value=6e-06  Score=56.39  Aligned_cols=40  Identities=35%  Similarity=0.454  Sum_probs=34.5

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHH---hcCCCCCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHIL---DYGKCPVT   41 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~   41 (504)
                      +.|+|+.+.+.+||+.+ +||+|.+.+|.+|+.   .+.+||+.
T Consensus        16 ~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           16 ASCSVCLEYLKEPVIIE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CBCSSSCCBCSSCCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             CCCccCCcccCccEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            36999999999999996 999999999999965   44578874

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=97.85  E-value=3e-06  Score=67.25  Aligned_cols=45  Identities=20%  Similarity=0.281  Sum_probs=40.9

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLTM   47 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~   47 (504)
                      .|+|+.+.+.+||+.+ +||+|++.+|.+|+.. +.+||+++.+++.
T Consensus        17 ~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           17 QCGICMEILVEPVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             BCTTTCSBCSSCEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCccCCcccCceeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            6999999999999996 9999999999999987 4579999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=1.6e-05  Score=57.50  Aligned_cols=46  Identities=13%  Similarity=0.174  Sum_probs=40.5

Q ss_pred             ccccCCCCCCCc---eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEP---VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMD   48 (504)
Q Consensus         2 ~c~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~   48 (504)
                      .|+|+.+.+.++   ++.| +||+|.+.+|.+|++.+.+||+++.+++..
T Consensus        25 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A           25 LCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             EETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             CCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            599999888776   6675 999999999999999999999999988753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.83  E-value=0.00011  Score=77.65  Aligned_cols=204  Identities=9%  Similarity=-0.002  Sum_probs=117.5

Q ss_pred             CeEEEEeccCCCEEEEE-eCCCcEEEEcCCC----CceEEEcccCccceeEEEEeeC-CCEEEEEeCCCcEEEEeCCCCC
Q 010669          225 GIVSLDIHYSKDVIATG-GVDTNAVLFDRPS----GQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg-~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      .+..++|++.+..|+.+ ...+.|+.+++..    ......+.........|++.+. ++++++-...+.|.++++... 
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~-  485 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-  485 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC-
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC-
Confidence            45678899876665554 4567888888764    2222222222233567888754 445555556788999998753 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC-CEEEEE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTG  375 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg-~~l~~g  375 (504)
                        .....+.........|+++|.+.+|+.+..  .+.|..+++........+.     ..-.....++|+|++ .++++-
T Consensus       486 --~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~-----~~l~~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          486 --KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-----ENIQWPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             --CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC-----SSCSSCCCEEECTTTCCEEEEE
T ss_pred             --ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe-----CCCCCccEEEEeccCCEEEEEe
Confidence              222222222244678899987666555543  2678888776433222211     112346789999965 455555


Q ss_pred             eCCCcEEEEEcCCCceeeeee--CCCCCeEEEEEcCCCcEEEEEeC-Cc-EEEEEcCCCcceeeeec
Q 010669          376 TSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~~~-d~-v~vwd~~~~~~~~~~~~  438 (504)
                      ...+.|..+|+........+.  ........|++..+  .|+.... .+ |..+|..+++.+..+..
T Consensus       559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred             cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence            567889999986433222222  11233455666543  4444433 34 99999888877666643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.81  E-value=0.02  Score=59.40  Aligned_cols=215  Identities=9%  Similarity=0.033  Sum_probs=119.7

Q ss_pred             CCcEEEEcCCCCc-eEEEcccCccceeEEEEeeCCCEEEEE-eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccC
Q 010669          244 DTNAVLFDRPSGQ-IVTTLSGHSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT  321 (504)
Q Consensus       244 dg~i~vwd~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~  321 (504)
                      ...|+..++.... ....+...-..+..++|++.+..|+.+ ...+.|..+++....  .....+...-.....+++.+.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~--~~~~v~~~~~~~P~GlAvD~~   94 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--SVQNVVVSGLLSPDGLACDWL   94 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CEEEECSSCSCEEEEEEETT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC--ceEEEEeCCCCCcCeEEEEec
Confidence            4568888886543 222223334557899999866655544 456788888886531  112223322356889999986


Q ss_pred             CCEEEE-EeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe--CCCcEEEEEcCCCceeeeeeCC
Q 010669          322 NKYFVT-ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT--SEALVKIWDVKSQANVAKFDGH  398 (504)
Q Consensus       322 ~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~--~dg~I~iwd~~~~~~~~~~~~~  398 (504)
                      +..|+. -...+.|.+.++..........     ..-.....++++|.+..|+...  ..+.|...++............
T Consensus        95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~-----~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~  169 (619)
T 3s94_A           95 GEKLYWTDSETNRIEVSNLDGSLRKVLFW-----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE  169 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEEC-----SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             CCEEEEEeCCCCEEEEEECCCCCEEEEEe-----CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence            555544 4567899999998654333221     1123467899999644444433  2467777777533322222223


Q ss_pred             CCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669          399 VGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV  469 (504)
Q Consensus       399 ~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~  469 (504)
                      -...+.|++++++..|+.+... + |..+|+............  ......+++..+  .|+.+...   |...+.
T Consensus       170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~--~ly~td~~~~~V~~~d~  241 (619)
T 3s94_A          170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED--ILYWTDWSTHSILACNK  241 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS--EEEEECTTTCSEEEEES
T ss_pred             CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC--EEEEecCCCCEEEEEEC
Confidence            4568999999977777776655 3 999998653322222111  223456777655  66665544   555553

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=97.80  E-value=1.6e-05  Score=59.96  Aligned_cols=45  Identities=18%  Similarity=0.219  Sum_probs=39.7

Q ss_pred             ccccCCCCCCC---ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCC
Q 010669            2 NCSISGEVPEE---PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTM   47 (504)
Q Consensus         2 ~c~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   47 (504)
                      .|+|+.+.+.+   +++.| +||+|.+.+|.+|+..+++||+++.++..
T Consensus        42 ~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           42 CCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             EETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            59999888766   77786 99999999999999999999999988753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.80  E-value=0.0079  Score=56.12  Aligned_cols=230  Identities=14%  Similarity=0.271  Sum_probs=116.9

Q ss_pred             CCEEEEEeCC----CcEEEEcCCCCceEEE--cccCccceeEEEEeeCCCEEEEEeCC-----CcEEEEeCCCCCCccee
Q 010669          235 KDVIATGGVD----TNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       235 ~~~l~sg~~d----g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~  303 (504)
                      +.+++.|+.+    ..+..||..+.+-...  +...... .+++ .-++.+++.|+.+     ..+.+||..+. .+..+
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKD-QWTSV   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEESCBCSSSBCCCEEEEETTTT-EEEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEE-EECCEEEEEeCcCCCccccceEEECCCCC-ceeeC
Confidence            4455666643    3578888877653222  1111111 1222 2267777777754     35888888763 33333


Q ss_pred             EEeccCCcCeEEEEEccCCCEEEEEeCCC-----eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          304 HTLKDHTAEVQAVTVHATNKYFVTASLDN-----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                      ..+.........+.+  ++..++.|+.++     .+.+||+.+.+-...-.   .........++.+  ++.+++.|+.+
T Consensus        93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~  165 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP---MNTRRSSVGVGVV--GGLLYAVGGYD  165 (302)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC---CSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred             CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC---CCCcccCceEEEE--CCEEEEEeCCC
Confidence            332221112222222  577777777653     57889988876443321   1111112222222  56777777643


Q ss_pred             -------CcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC------cEEEEEcCCCcceeeeecCCCCC
Q 010669          379 -------ALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSDSET  443 (504)
Q Consensus       379 -------g~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d------~v~vwd~~~~~~~~~~~~~~~~~  443 (504)
                             ..+.+||+.+.+  .+..+.........+.+  ++.+++.|+.+      .+.+||+.+.+-...-.......
T Consensus       166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~  243 (302)
T 2xn4_A          166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR  243 (302)
T ss_dssp             TTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             CCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc
Confidence                   358899987653  22222211122223333  67777777643      28999998754322111111111


Q ss_pred             CeeEEEECCCCCEEEEEeCc-------EEEEEeeccCccceeEE
Q 010669          444 PTNSVDFDHSGSYLAVASAD-------IRVYQVASVKADWNCIK  480 (504)
Q Consensus       444 ~v~~i~~~~~g~~l~~~~~d-------i~vw~~~~~~~~~~~i~  480 (504)
                      ....+.+  ++.+++.|+.+       +.+||.  ....|..+.
T Consensus       244 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~  283 (302)
T 2xn4_A          244 NAGVCAV--NGLLYVVGGDDGSCNLASVEYYNP--TTDKWTVVS  283 (302)
T ss_dssp             SCEEEEE--TTEEEEECCBCSSSBCCCEEEEET--TTTEEEECS
T ss_pred             cCeEEEE--CCEEEEECCcCCCcccccEEEEcC--CCCeEEECC
Confidence            1122222  56677777643       566665  346788765

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.80  E-value=4.2e-06  Score=59.75  Aligned_cols=51  Identities=14%  Similarity=0.208  Sum_probs=44.6

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      ..|+|+.+.+.+ ++.| +||+|.+.+|.+|+..+.+||+++.++...+.+.+
T Consensus        16 ~~C~IC~~~~~~-~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   66 (70)
T 2ecn_A           16 EECCICMDGRAD-LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSG   66 (70)
T ss_dssp             CCCSSSCCSCCS-EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred             CCCeeCCcCccC-cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence            369999999999 8886 99999999999999988899999999887665443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.79  E-value=0.027  Score=58.39  Aligned_cols=198  Identities=7%  Similarity=-0.048  Sum_probs=124.7

Q ss_pred             CCeEEEEeccCCCEEE-EEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCCcc
Q 010669          224 PGIVSLDIHYSKDVIA-TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~  301 (504)
                      ..+..++|++.+..|+ +-..++.|..+++........+.........+++.+.+. +.++-...+.|.+.++....   
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~---  113 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH---  113 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---
Confidence            3578999998766554 445678899988875544444433334577899887554 44555567889999886532   


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE-eCC
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSE  378 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g-~~d  378 (504)
                      ....+...-....+|+++|...+|+.+..  .+.|...++..........      .-.....+++++++..|..+ ...
T Consensus       114 ~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~------~~~~P~GlalD~~~~~LY~aD~~~  187 (628)
T 4a0p_A          114 RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP------NVGRANGLTIDYAKRRLYWTDLDT  187 (628)
T ss_dssp             CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC------SCSSEEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC------CCCCcceEEEccccCEEEEEECCC
Confidence            11112233345789999997666666653  5688888887654333332      12457899999976555544 556


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeC-Cc-EEEEEcCCCcce
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNF  433 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~-d~-v~vwd~~~~~~~  433 (504)
                      +.|..+|+..... ..+.........+++.. + .|+.+.. .+ |...|..+++..
T Consensus       188 ~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~~~  241 (628)
T 4a0p_A          188 NLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQNR  241 (628)
T ss_dssp             TEEEEEETTSCSC-EEEEECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCSC
T ss_pred             CEEEEEcCCCCce-EEeeccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCCCce
Confidence            7899999865433 33333334566888864 3 4444444 44 888887666543

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.75  E-value=1.5e-05  Score=64.96  Aligned_cols=52  Identities=19%  Similarity=0.393  Sum_probs=47.1

Q ss_pred             CccccCCCCCCCc-------eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEP-------VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+.+...+|       ++. .+||+|.+.+|++|++.+.+||+++.++..++++++
T Consensus        73 ~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~  131 (133)
T 4ap4_A           73 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI  131 (133)
T ss_dssp             CBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred             CCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence            3599999998887       666 599999999999999999999999999999999886

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.69  E-value=0.011  Score=61.21  Aligned_cols=200  Identities=8%  Similarity=0.010  Sum_probs=117.4

Q ss_pred             CCeEEEEeccCCCEEEEEe-CCCcEEEEcCCCCce-EEEcccCccceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCCc
Q 010669          224 PGIVSLDIHYSKDVIATGG-VDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNY  300 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~-~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~  300 (504)
                      .....++|++.++.|+.+. ..+.|..+++..... ...+.........+++.+.+. ++++-...+.|.+.+.....  
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~--  117 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--  117 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--
Confidence            3477999998776665544 467888888765432 233333335688999998555 45555567899999987631  


Q ss_pred             ceeEEeccCCcCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE-EEEeC
Q 010669          301 DCKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGTS  377 (504)
Q Consensus       301 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l-~~g~~  377 (504)
                       ....+...-....+|+++|.+.+|+.+..  .+.|...++..........     ..-.....+++++++..| ++-..
T Consensus       118 -~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-----~~~~~P~Glald~~~~~LY~aD~~  191 (619)
T 3s94_A          118 -RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-----SEIYWPNGLTLDYEEQKLYWADAK  191 (619)
T ss_dssp             -CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-----SSCSSEEEEEEETTTTEEEEEETT
T ss_pred             -EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-----CCCCCCcEEEEEccCCEEEEEeCC
Confidence             11122233345678999997666666653  4677777776543332222     112457899999965544 44456


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcce
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNF  433 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~  433 (504)
                      .+.|..+|+..........+.......|++..+  .|+.+... + |...|..+++..
T Consensus       192 ~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             TCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred             CCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCccc
Confidence            678999998643322222212223356777655  55555443 4 888888776543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.68  E-value=0.017  Score=55.34  Aligned_cols=237  Identities=11%  Similarity=0.013  Sum_probs=126.2

Q ss_pred             CeEEEEeccCCC-EEEEEeCCCcEEEEcCCCCceEEEc-------ccCccceeEEEEeeC---CCEEEEE-eC-------
Q 010669          225 GIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTL-------SGHSKKVTSVKFVTE---GDLFLTG-SA-------  285 (504)
Q Consensus       225 ~I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~-------~~h~~~v~~l~~s~~---~~~l~s~-s~-------  285 (504)
                      .-..|+|.|+|+ +++ +...|.|++++.. +.....+       .........++|+|+   +..|+.+ +.       
T Consensus        19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            457999999999 554 5567999999853 3321111       112345789999995   4444433 22       


Q ss_pred             CCcEEEEeCCCCC-CcceeE----Eecc---CCcCeEEEEEccCCCEEEEEeC-------------CCeEEEEECCCCe-
Q 010669          286 DKTVRVWQGSEDG-NYDCKH----TLKD---HTAEVQAVTVHATNKYFVTASL-------------DNTWCFYDLSSGI-  343 (504)
Q Consensus       286 dg~i~iwd~~~~~-~~~~~~----~~~~---h~~~v~~l~~~p~~~~l~s~s~-------------dg~i~iwd~~~~~-  343 (504)
                      ...|..|+..... ......    .+..   ....-..|.|.|+|.++++.+.             .|.|.-+|....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            2346666654321 111111    1110   1112357999999976666543             2456666665320 


Q ss_pred             -----------EEEEeecCCCCCCCCCeEEEEECC-CCCEEEEEeC-CCcEEEEEcCCC---------------------
Q 010669          344 -----------CLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTS-EALVKIWDVKSQ---------------------  389 (504)
Q Consensus       344 -----------~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~g~~-dg~I~iwd~~~~---------------------  389 (504)
                                 ....+..    ++ .....++|+| +|.++++-.. ++.=.|.-+..+                     
T Consensus       177 ~~npf~~~~~~~~~i~a~----G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~  251 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSY----GI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE  251 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEE----CC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred             CCCCCcCCCCCCccEEEE----cC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence                       0000100    11 2367899999 6666554322 111122211111                     


Q ss_pred             ----------ceeeeeeCCCCCeEEEEEcC-------CCcEEEEEeCCc-EEEEEcCCCcceeeeecC-CCCCCeeEEEE
Q 010669          390 ----------ANVAKFDGHVGAVTAISFSE-------NGYYLATAAHDG-VKLWDLRKLKNFRSFESS-DSETPTNSVDF  450 (504)
Q Consensus       390 ----------~~~~~~~~~~~~i~~l~~s~-------~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~-~~~~~v~~i~~  450 (504)
                                .++..+. +...+..+.|..       +|.++++.-..+ |...++..++........ .....+..+++
T Consensus       252 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~  330 (353)
T 2g8s_A          252 AKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT  330 (353)
T ss_dssp             CCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred             ccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence                      1112222 234677888864       466666655555 888887755433222111 11357899999


Q ss_pred             CCCCCEEEEEeC-cEEEEEe
Q 010669          451 DHSGSYLAVASA-DIRVYQV  469 (504)
Q Consensus       451 ~~~g~~l~~~~~-di~vw~~  469 (504)
                      .|+|.+.++... +.+||.+
T Consensus       331 ~pdG~lyv~td~~~g~I~ri  350 (353)
T 2g8s_A          331 GPDGYLYVLTDESSGELLKV  350 (353)
T ss_dssp             CTTSCEEEEECSTTEEEEEE
T ss_pred             CCCCcEEEEEeCCCCEEEEE
Confidence            999986665443 3888887

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.68  E-value=6.4e-05  Score=54.11  Aligned_cols=44  Identities=14%  Similarity=0.200  Sum_probs=38.4

Q ss_pred             ccccCCCCCCCceEe---CCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVS---KNSGLLFEKRLIERHILDYGKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   46 (504)
                      .|+|+.+.+.+|...   | +||+|.+.+|.+|++.+.+||+++.++.
T Consensus        17 ~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~   63 (74)
T 2ep4_A           17 LCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVL   63 (74)
T ss_dssp             BCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred             CCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence            599999998766433   5 9999999999999999999999998875

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=97.65  E-value=7.4e-05  Score=52.93  Aligned_cols=45  Identities=18%  Similarity=0.366  Sum_probs=38.3

Q ss_pred             ccccCCCCCC---CceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCC
Q 010669            2 NCSISGEVPE---EPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTM   47 (504)
Q Consensus         2 ~c~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   47 (504)
                      .|+|+.+.+.   .+++.| +||+|.+.+|.+|+..+++||+++.+++.
T Consensus        16 ~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             SBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             CCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            5999987763   456665 99999999999999999999999988764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.60  E-value=0.052  Score=51.91  Aligned_cols=226  Identities=12%  Similarity=0.154  Sum_probs=115.8

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec---cCCcCeEEEEEccC---CCEEEEEeC-C-----Ce
Q 010669          266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK---DHTAEVQAVTVHAT---NKYFVTASL-D-----NT  333 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~p~---~~~l~s~s~-d-----g~  333 (504)
                      .....++|.|+|++++ +..+|.|.+++  .+ ....+..+.   ........|+|+|+   +..|+.+.. .     +.
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE--TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE--CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            3468999999998555 45669999998  22 222222221   22356899999998   555544433 2     67


Q ss_pred             EEEEECCCCeE---EEEeecCCC-CCCCCCeEEEEECCCCCEEEEEeC-------------CCcEEEEEcCCC-------
Q 010669          334 WCFYDLSSGIC---LTQVSDAGT-DGRPEGYTSAAFHPDGLILGTGTS-------------EALVKIWDVKSQ-------  389 (504)
Q Consensus       334 i~iwd~~~~~~---~~~~~~~~~-~~~~~~v~~~~~~pdg~~l~~g~~-------------dg~I~iwd~~~~-------  389 (504)
                      |..|+...+..   ...+..... .........++|.|||.++++-+.             .|.|.-+|....       
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            88888875421   111110100 111123468999999987766432             255666665420       


Q ss_pred             -----ceeeee-eCCCCCeEEEEEcC-CCcEEEEEeCCc-E------EEEEcCCCcc------------------eeeee
Q 010669          390 -----ANVAKF-DGHVGAVTAISFSE-NGYYLATAAHDG-V------KLWDLRKLKN------------------FRSFE  437 (504)
Q Consensus       390 -----~~~~~~-~~~~~~i~~l~~s~-~g~~l~s~~~d~-v------~vwd~~~~~~------------------~~~~~  437 (504)
                           .....+ .++. ....++|+| +|.++++-.... +      .+.-+..+..                  +..+ 
T Consensus       187 ~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-  264 (352)
T 2ism_A          187 LGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-  264 (352)
T ss_dssp             TTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred             cCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence                 011111 2232 367789999 666555433222 2      2333333221                  1111 


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccc--eeEEEccCCCCCCceeEEEEeecCcc
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW--NCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~--~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                       . .......++| .+|.++++.-..  |...+++.....+  .....+-.  ..+.+..+.+.|+|.+
T Consensus       265 -~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~l  328 (352)
T 2ism_A          265 -P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGAL  328 (352)
T ss_dssp             -T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCE
T ss_pred             -C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcE
Confidence             1 1234567777 456555443333  5555553322211  11122211  1457899999999864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.56  E-value=0.063  Score=51.34  Aligned_cols=224  Identities=13%  Similarity=0.098  Sum_probs=117.5

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec---cCCcCeEEEEEccC---CCEEEEEeC----C----
Q 010669          266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK---DHTAEVQAVTVHAT---NKYFVTASL----D----  331 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~p~---~~~l~s~s~----d----  331 (504)
                      .....++|.|+|++++ +..+|.|.+++. . +. ..+..+.   ........|+++|+   +..|+++..    +    
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~-G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLISP-S-GK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEECS-S-CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEeC-C-Cc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            4578999999998544 566699999973 2 22 2222221   12346889999997   444544432    3    


Q ss_pred             CeEEEEECCCC--eE--EEE-eecCCCCCCCCCeEEEEECCCCCEEEEEeC-------------CCcEEEEEcCCC----
Q 010669          332 NTWCFYDLSSG--IC--LTQ-VSDAGTDGRPEGYTSAAFHPDGLILGTGTS-------------EALVKIWDVKSQ----  389 (504)
Q Consensus       332 g~i~iwd~~~~--~~--~~~-~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-------------dg~I~iwd~~~~----  389 (504)
                      ..|..|+....  ..  ... +... ..........++|.|||.++++-+.             .|.|.-+|....    
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~-~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~  183 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGI-PGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD  183 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEE-ECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcC-CCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence            57888887654  11  111 1100 0011123467999999987776432             245665655321    


Q ss_pred             ----ceeeeeeCCCCCeEEEEEcC-CCcEEEEEeCC-c---EEEEEcCCCc------------------ceeeeecCCCC
Q 010669          390 ----ANVAKFDGHVGAVTAISFSE-NGYYLATAAHD-G---VKLWDLRKLK------------------NFRSFESSDSE  442 (504)
Q Consensus       390 ----~~~~~~~~~~~~i~~l~~s~-~g~~l~s~~~d-~---v~vwd~~~~~------------------~~~~~~~~~~~  442 (504)
                          .....-.++. ....++|+| +|.++++-... .   |.+..  .+.                  .+..+.  ...
T Consensus       184 npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~  258 (354)
T 3a9g_A          184 NPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG--SET  258 (354)
T ss_dssp             SSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT--TCC
T ss_pred             CCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC--CCC
Confidence                0011112343 356899999 67655554322 1   44332  222                  111110  113


Q ss_pred             CCeeEEEEC-------CCCCEEEEEeCc--EEEEEeeccCccceeEEEc-cCCCCCCceeEEEEeecCcc
Q 010669          443 TPTNSVDFD-------HSGSYLAVASAD--IRVYQVASVKADWNCIKTF-PDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       443 ~~v~~i~~~-------~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~-~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .....++|.       .+|.++++.-..  |...++.... .......+ .+-  ...+..+.+-|+|.+
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~--~~rp~~v~~~pDG~l  325 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNM-EVRKISTFFKNV--FGRLRDVVIDDDGGI  325 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGG-CEEEEEEECTTT--SCCEEEEEECTTSCE
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCC-cccceeeeccCC--CCCeeEEEECCCCcE
Confidence            457788884       466665554433  5555553211 11112232 221  457889999998854

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.46  E-value=2e-05  Score=53.24  Aligned_cols=44  Identities=14%  Similarity=0.256  Sum_probs=38.7

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMD   48 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~   48 (504)
                      +.|+|+.+.+.+|++.| +||+|.+.+|.+   ...+||+.+.++++.
T Consensus         7 ~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            7 LRCQQCQAEAKCPKLLP-CLHTLCSGCLEA---SGMQCPICQAPWPLG   50 (56)
T ss_dssp             SSCSSSCSSCBCCSCST-TSCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred             CCceEeCCccCCeEEcC-CCCcccHHHHcc---CCCCCCcCCcEeecC
Confidence            46999999999999997 999999999988   356799999988764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.46  E-value=0.17  Score=53.84  Aligned_cols=223  Identities=10%  Similarity=0.057  Sum_probs=129.6

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  303 (504)
                      ..|.++....+| .|..|+.+| +..||..+.+...........|.++.. .++. |..++.+ -+..||..+.   . .
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~---~-~  133 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSR---K-L  133 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTC---C-E
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCC---e-E
Confidence            468888777665 555666665 788998765432211112234776654 3554 5555655 5778887653   1 2


Q ss_pred             EEec-----cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          304 HTLK-----DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       304 ~~~~-----~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                      ..+.     .....|.++....++.+.+ |+. +.+..+|..++.................|.++...+++..|.+|+. 
T Consensus       134 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-  210 (758)
T 3ott_A          134 TSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-  210 (758)
T ss_dssp             EEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred             EEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence            2221     1234688888877777555 444 4577889877754322111100011234888888887775555664 


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecC------CCCCCeeEEEECC
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESS------DSETPTNSVDFDH  452 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~------~~~~~v~~i~~~~  452 (504)
                      +-|..||..+++...........|.++....+|.+.+. +.+|+.+++..+.... .+...      -....|.++..+.
T Consensus       211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~  288 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDNGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQ  288 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETTEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECT
T ss_pred             CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCCceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcC
Confidence            45888998765432211112345888888888876654 4567999998765432 22110      1134688998888


Q ss_pred             CCCEEEEE
Q 010669          453 SGSYLAVA  460 (504)
Q Consensus       453 ~g~~l~~~  460 (504)
                      +|.+-+..
T Consensus       289 ~g~lWiGT  296 (758)
T 3ott_A          289 EHNIWLGT  296 (758)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEEEe
Confidence            88765543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.44  E-value=0.063  Score=50.23  Aligned_cols=233  Identities=12%  Similarity=0.120  Sum_probs=115.8

Q ss_pred             EEEEEeCCCcEEEEcCCCCceEE-EcccCccceeEEEEeeCCCEEEEEeC-----C------CcEEEEeCCCCCCcceeE
Q 010669          237 VIATGGVDTNAVLFDRPSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSA-----D------KTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       237 ~l~sg~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~s~-----d------g~i~iwd~~~~~~~~~~~  304 (504)
                      +++.|+  ..+.+||..+++-.. .+..............++.+++.|+.     .      ..+.+||..+. .+..+.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS-EWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT-EEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC-eEEECC
Confidence            344555  568999998776432 22211122222233347777777773     1      12677887763 333222


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCC--------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLD--------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                      .+.........+.+  ++..++.|+.+        ..+.+||..+++-...-.   ....... .+++. .++++++.|+
T Consensus        84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~-~~~~~-~~~~iyv~GG  156 (315)
T 4asc_A           84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP---LPYVVYG-HTVLS-HMDLVYVIGG  156 (315)
T ss_dssp             CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC---CSSCCBS-CEEEE-ETTEEEEECC
T ss_pred             CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC---CCCcccc-eeEEE-ECCEEEEEeC
Confidence            22211111112222  56677777642        358899998875332211   1111111 22222 3567788877


Q ss_pred             C-C-----CcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC------cEEEEEcCCCcceeeeecCCCC
Q 010669          377 S-E-----ALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSDSE  442 (504)
Q Consensus       377 ~-d-----g~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d------~v~vwd~~~~~~~~~~~~~~~~  442 (504)
                      . +     ..+.+||+.+.+  .+..+......-..+.+  ++.+++.|+.+      .+.+||+.+.+-...-......
T Consensus       157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r  234 (315)
T 4asc_A          157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER  234 (315)
T ss_dssp             BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred             CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence            6 2     468999987653  22222211112223333  66777777643      2788998875432221111111


Q ss_pred             CCeeEEEECCCCCEEEEEeCc--------------EEEEEeeccCccceeEEEcc
Q 010669          443 TPTNSVDFDHSGSYLAVASAD--------------IRVYQVASVKADWNCIKTFP  483 (504)
Q Consensus       443 ~~v~~i~~~~~g~~l~~~~~d--------------i~vw~~~~~~~~~~~i~~~~  483 (504)
                      .....+.+  ++.+++.|+.+              -.+|.++.....|+.+....
T Consensus       235 ~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~  287 (315)
T 4asc_A          235 SSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI  287 (315)
T ss_dssp             BSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEESCS
T ss_pred             cceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhccCC
Confidence            12222333  55666666642              23455555557899884443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.42  E-value=0.026  Score=52.42  Aligned_cols=186  Identities=14%  Similarity=0.202  Sum_probs=101.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEcCCCCc---eEEE--cccCccceeEEEEeeCCCEEEEEeCC-----CcEEEEeCCCCC
Q 010669          234 SKDVIATGGVD-----TNAVLFDRPSGQ---IVTT--LSGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDG  298 (504)
Q Consensus       234 ~~~~l~sg~~d-----g~i~vwd~~~~~---~~~~--~~~h~~~v~~l~~s~~~~~l~s~s~d-----g~i~iwd~~~~~  298 (504)
                      ++.+++.|+.+     ..+.+||..+.+   -...  +......-..+.  -++.+++.|+.+     ..+.+||..+. 
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~-  138 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNID-  138 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT-
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCC-
Confidence            56777777755     468899987765   3222  221111112222  267777777654     35788888763 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                      .+..+..+......-..+.+  ++..++.|+.+     ..+.+||+.+..-...-.   .........++.+  ++.+++
T Consensus       139 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~--~~~i~v  211 (301)
T 2vpj_A          139 QWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP---MATKRSGAGVALL--NDHIYV  211 (301)
T ss_dssp             EEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE--TTEEEE
T ss_pred             eEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC---CCcccccceEEEE--CCEEEE
Confidence            34444333222122222222  67777777754     458899998876543321   1111112223333  577888


Q ss_pred             EEeCC-----CcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCCcEEEEEeCC-----c-EEEEEcCCCc
Q 010669          374 TGTSE-----ALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKLK  431 (504)
Q Consensus       374 ~g~~d-----g~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-----~-v~vwd~~~~~  431 (504)
                      .|+.+     ..+.+||+.+.+-  +..+.........+.+  ++.+++.|+.+     . |.+||+.+.+
T Consensus       212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            88764     4689999977542  2222211122223333  67777777654     3 7888887644

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.41  E-value=0.1  Score=50.38  Aligned_cols=228  Identities=13%  Similarity=0.157  Sum_probs=138.9

Q ss_pred             EEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec
Q 010669          228 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK  307 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  307 (504)
                      +.-.+|..+.+|.-. ..++.|||+++...+..+.-. ..|.-=.|-.+..+ +..+ +..|.-|++....  .+...+.
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~l-~lVT-~taVyHWsi~~~s--~P~kvFd  143 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTV-ALVT-DNAVYHWSMEGES--QPVKMFD  143 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTEE-EEEC-SSEEEEEESSSSC--CCEEEEE
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCCeE-EEEc-CCeeEEecccCCC--Cchhhee
Confidence            344677777776655 678999999999888887743 45666677655543 3322 4579999997633  4555554


Q ss_pred             cC----CcCeEEEEEccCCCEEEEEeC-------CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC---CCEEE
Q 010669          308 DH----TAEVQAVTVHATNKYFVTASL-------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD---GLILG  373 (504)
Q Consensus       308 ~h----~~~v~~l~~~p~~~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd---g~~l~  373 (504)
                      -|    ...|..-..+++.++++..+-       .|.+.+|..+.+... .+.     +|......+.+..+   ..+|+
T Consensus       144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ie-----Ghaa~F~~~~~~g~~~~~~lf~  217 (494)
T 1bpo_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIE-----GHAASFAQFKMEGNAEESTLFC  217 (494)
T ss_dssp             CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EEC-----CSEEEEEEEECTTCSSEEEEEE
T ss_pred             cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hhe-----eeeeeeEEEecCCCCCCceEEE
Confidence            44    346777778888887765442       467889998876432 222     33333322222211   12344


Q ss_pred             EEeC---CCcEEEEEcCCC---ce------eeee-e--CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669          374 TGTS---EALVKIWDVKSQ---AN------VAKF-D--GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       374 ~g~~---dg~I~iwd~~~~---~~------~~~~-~--~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~  437 (504)
                      .+..   .+.++|.++...   .+      +..+ .  .-..-..++..++.-..++.-+..| |.+||+.++.++..-.
T Consensus       218 fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr  297 (494)
T 1bpo_A          218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (494)
T ss_dssp             EEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence            4433   278999998543   11      1111 1  1234566788888777788888888 9999999999887766


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCcEEEEEe
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASADIRVYQV  469 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~  469 (504)
                      ..  ...|..-+-+....=+++....+.|..+
T Consensus       298 Is--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v  327 (494)
T 1bpo_A          298 IS--GETIFVTAPHEATAGIIGVNRKGQVLSV  327 (494)
T ss_dssp             CC--SSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred             cc--CCceEEecccCCCCcEEEEccCceEEEE
Confidence            54  3455544444443334444444455444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.39  E-value=0.013  Score=58.35  Aligned_cols=155  Identities=11%  Similarity=0.040  Sum_probs=94.0

Q ss_pred             CeEEEEEccC-CCEEEEEe-CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEE-------CCCCCEEEEEeCCC---
Q 010669          312 EVQAVTVHAT-NKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF-------HPDGLILGTGTSEA---  379 (504)
Q Consensus       312 ~v~~l~~~p~-~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~pdg~~l~~g~~dg---  379 (504)
                      ....|+|+|. +..|+.+. ..+.|++.|+.++......... . ........++|       +++|..|+++...+   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-~-~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN-T-IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT-T-SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC-c-cccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            4678999983 44444444 4467999999988766554321 1 12345889999       99999666665543   


Q ss_pred             ----cEEEEEcCC-Ccee-----eeeeCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcC-------CCcc--------
Q 010669          380 ----LVKIWDVKS-QANV-----AKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLR-------KLKN--------  432 (504)
Q Consensus       380 ----~I~iwd~~~-~~~~-----~~~~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~-------~~~~--------  432 (504)
                          .|.+++... +...     ..+... .....++++|+ +.++++-..++ |..+|+.       ++..        
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             ccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence                266676433 1221     122211 23467889995 44444444556 9999987       4443        


Q ss_pred             ---eee-eecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEee
Q 010669          433 ---FRS-FESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVA  470 (504)
Q Consensus       433 ---~~~-~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~  470 (504)
                         ... +... .......++|+|+|++|+.+...   |+.++++
T Consensus       297 ~g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          297 PNTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TTTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence               112 2222 13456899999999987777654   6665553

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=97.38  E-value=0.00013  Score=56.22  Aligned_cols=46  Identities=20%  Similarity=0.277  Sum_probs=39.5

Q ss_pred             ccccCCCCCCCc-----------------eEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEP-----------------VVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTM   47 (504)
Q Consensus         2 ~c~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   47 (504)
                      .|+|+.+.+.++                 ++...+||+|-+.+|.+||..+.+||+++.+..+
T Consensus        39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           39 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  101 (106)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence            499998887765                 5555799999999999999999999999988654

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=97.35  E-value=0.00013  Score=52.83  Aligned_cols=52  Identities=21%  Similarity=0.293  Sum_probs=41.4

Q ss_pred             CccccCCCCC--CCceEeC-CCCeeeeHHHHHHHHHh-cCCCCCCCCCCCCCcccc
Q 010669            1 MNCSISGEVP--EEPVVSK-NSGLLFEKRLIERHILD-YGKCPVTGEPLTMDDIVP   52 (504)
Q Consensus         1 ~~c~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~   52 (504)
                      +.|+|+.++.  .++++.| .+||.|++.+|.++.+. ++.||.++++.+..+++-
T Consensus        12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~   67 (78)
T 1e4u_A           12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY   67 (78)
T ss_dssp             CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred             CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence            3699999977  3455543 49999999999999864 467999999999877653

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=97.33  E-value=0.00023  Score=49.34  Aligned_cols=44  Identities=23%  Similarity=0.379  Sum_probs=40.8

Q ss_pred             ccccCCCCCCCceEe--CCCCee-eeHHHHHHHHHhcCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVS--KNSGLL-FEKRLIERHILDYGKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~   46 (504)
                      .|.|+.+-+.++|+.  | +||. |...++.++...+++||+++++++
T Consensus        10 ~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A           10 PCVICQGRPKNGCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             CCTTTSSSCSCEEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CCCcCCCCCCCEEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            599999999999987  8 9999 899999999998899999999875

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.31  E-value=0.016  Score=55.50  Aligned_cols=243  Identities=12%  Similarity=0.058  Sum_probs=113.5

Q ss_pred             CCCEEEEEeCC-CcEEEEcCCC-CceEEEcccCc--cc-eeEEEEeeCCCEEEEEeC-C---------CcEEEEeCCCCC
Q 010669          234 SKDVIATGGVD-TNAVLFDRPS-GQIVTTLSGHS--KK-VTSVKFVTEGDLFLTGSA-D---------KTVRVWQGSEDG  298 (504)
Q Consensus       234 ~~~~l~sg~~d-g~i~vwd~~~-~~~~~~~~~h~--~~-v~~l~~s~~~~~l~s~s~-d---------g~i~iwd~~~~~  298 (504)
                      ++.+++.|+.+ ..+.+||..+ ......+..-.  .. -.+++. -++.+++.|+. +         ..+.+||..+. 
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~-   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN-   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT-
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC-
Confidence            56676777643 4688899864 12222332111  11 112222 26777777765 2         46888998763 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCC---------------------------------------CeEEEEEC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---------------------------------------NTWCFYDL  339 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d---------------------------------------g~i~iwd~  339 (504)
                      .+..+..+......-.++.. .+++.++.|+.+                                       ..+.+||.
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             cEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence            33333322211111122222 467888888764                                       57899999


Q ss_pred             CCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC------CCcEEEEEc--CCCc--eeeeeeCCCCCeEEEEEcC
Q 010669          340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS------EALVKIWDV--KSQA--NVAKFDGHVGAVTAISFSE  409 (504)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~------dg~I~iwd~--~~~~--~~~~~~~~~~~i~~l~~s~  409 (504)
                      .+.+-...-... . ..... .+++.. ++.+++.|+.      ...+.+||+  .+.+  .+..+..........+...
T Consensus       176 ~~~~W~~~~~~p-~-~~~~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~  251 (357)
T 2uvk_A          176 STQQWSYAGESP-W-YGTAG-AAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGIS  251 (357)
T ss_dssp             TTTEEEEEEECS-S-CCCBS-CEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEE
T ss_pred             CCCcEEECCCCC-C-CCccc-ccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEE
Confidence            887644332211 0 11111 222222 5677777764      345777887  3322  2222211111111111222


Q ss_pred             CCcEEEEEeCC-----------------------cEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---
Q 010669          410 NGYYLATAAHD-----------------------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---  463 (504)
Q Consensus       410 ~g~~l~s~~~d-----------------------~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---  463 (504)
                      ++.+++.|+.+                       .+.+||+.+.+-...-...........+  ..++++++.||.+   
T Consensus       252 ~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~  329 (357)
T 2uvk_A          252 NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGG  329 (357)
T ss_dssp             TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGG
T ss_pred             CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCC
Confidence            66777777621                       2778998865432221222111222222  3467777778754   


Q ss_pred             ---EEEEEeeccCccceeEEEccCC
Q 010669          464 ---IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       464 ---i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                         -.+|-+....+.|..+..+.+|
T Consensus       330 ~~~~~v~~l~~~~~~~~~~~~~~~~  354 (357)
T 2uvk_A          330 KAVTDSVLITVKDNKVTVQNLEHHH  354 (357)
T ss_dssp             CEEEEEEEEEC-CCSCEEEC-----
T ss_pred             CEeeeEEEEEEcCcEeEeeeccccc
Confidence               2344343344677777777665

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=97.30  E-value=0.00022  Score=49.30  Aligned_cols=44  Identities=18%  Similarity=0.338  Sum_probs=40.4

Q ss_pred             ccccCCCCCCCceEe--CCCCee-eeHHHHHHHHHhcCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVS--KNSGLL-FEKRLIERHILDYGKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~   46 (504)
                      .|.|+.+-+.++++-  | +||. |.+.++.++.+.+++||+++++++
T Consensus         9 ~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            9 PCSLCEKRPRDGNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             BCTTTSSSBSCEEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             CCcccCCcCCCeEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            599999999999887  7 9998 999999999998889999999875

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.29  E-value=0.13  Score=48.78  Aligned_cols=229  Identities=8%  Similarity=0.070  Sum_probs=125.7

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce--EEEc----ccCccceeEEEEeeC---CCEEEEE---eCCCcEEE
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI--VTTL----SGHSKKVTSVKFVTE---GDLFLTG---SADKTVRV  291 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~----~~h~~~v~~l~~s~~---~~~l~s~---s~dg~i~i  291 (504)
                      ..-..|+|.|+|+++++--..|.|++++..+++.  +..+    .........|+|+|+   +..|+..   ..++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            3467999999999877765589999998665543  2222    123456899999984   3334332   23455555


Q ss_pred             EeCCCCC-------CcceeE-Eec-cCCcCeEEEEEccCCCEEEEEeC-------------CCeEEEEECCCC-------
Q 010669          292 WQGSEDG-------NYDCKH-TLK-DHTAEVQAVTVHATNKYFVTASL-------------DNTWCFYDLSSG-------  342 (504)
Q Consensus       292 wd~~~~~-------~~~~~~-~~~-~h~~~v~~l~~~p~~~~l~s~s~-------------dg~i~iwd~~~~-------  342 (504)
                      |......       ..+.+. .+. .....-..|.|.|+|.++++.+.             .|.|.-.+....       
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf  191 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF  191 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence            6554311       111111 121 11123467999999987777543             344554554422       


Q ss_pred             --eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCc------------------eeeeeeCCCCC
Q 010669          343 --ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQA------------------NVAKFDGHVGA  401 (504)
Q Consensus       343 --~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~~------------------~~~~~~~~~~~  401 (504)
                        ..+...      ++ .....++|+|+|.++++=. .++.=.|.-+..+.                  ++..+..+...
T Consensus       192 ~~~~i~a~------G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a  264 (347)
T 3das_A          192 PGSPVYSY------GH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS  264 (347)
T ss_dssp             TTCCEEEB------CC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred             CCCeEEee------CC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence              011111      22 2356899999988766542 23322232222221                  12233323246


Q ss_pred             eEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcce---eeeecCCCCCCeeEEEECCCCCEEEEEe
Q 010669          402 VTAISFSENGYYLATAAHDG-VKLWDLRKLKNF---RSFESSDSETPTNSVDFDHSGSYLAVAS  461 (504)
Q Consensus       402 i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~---~~~~~~~~~~~v~~i~~~~~g~~l~~~~  461 (504)
                      ...++|. +|..++..-... |....+.....+   ..+ .......+..+...|||.++++..
T Consensus       265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~-l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          265 PSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAF-LEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEE-STTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CcceEEE-cCceeeccccCCEEEEEEecCCceecceEEe-ecCCCCCccEEEECCCCcEEEEEc
Confidence            6788887 465555554444 666666544321   111 111246789999999997766654

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.29  E-value=0.00014  Score=55.02  Aligned_cols=51  Identities=14%  Similarity=0.221  Sum_probs=40.0

Q ss_pred             CccccCCCCCCCceEe--CCCCeeeeHHHHHHHHHhc---C-----CCCC--CCCC--CCCCccc
Q 010669            1 MNCSISGEVPEEPVVS--KNSGLLFEKRLIERHILDY---G-----KCPV--TGEP--LTMDDIV   51 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~-----~~p~--~~~~--~~~~~~~   51 (504)
                      +.|+|+.+....|++.  ..+||.|++.+|.+|++..   |     +||.  ++..  ++.+++.
T Consensus         6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~   70 (94)
T 1wim_A            6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE   70 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred             cCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence            4699999998888775  2499999999999999852   2     5999  8877  6555443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.27  E-value=0.062  Score=50.02  Aligned_cols=186  Identities=12%  Similarity=0.153  Sum_probs=100.7

Q ss_pred             CCCEEEEEeCC----CcEEEEcCCCCceEE--EcccCccceeEEEEeeCCCEEEEEeCC------CcEEEEeCCCCCCcc
Q 010669          234 SKDVIATGGVD----TNAVLFDRPSGQIVT--TLSGHSKKVTSVKFVTEGDLFLTGSAD------KTVRVWQGSEDGNYD  301 (504)
Q Consensus       234 ~~~~l~sg~~d----g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~s~d------g~i~iwd~~~~~~~~  301 (504)
                      ++.+++.|+.+    ..+.+||..+.+-..  .+......-..+.  -++.+++.|+.+      ..+.+||..+. .+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~W~  131 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTE-SWH  131 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTT-EEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCC-ceE
Confidence            56777778755    568889988765322  2221111112222  267777777765      46888998763 333


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeC---------CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASL---------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      .+..+.........+.+  ++..++.|+.         -..+.+||+.+..-...-.   ..........+.+  +++++
T Consensus       132 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~--~~~i~  204 (306)
T 3ii7_A          132 TKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP---MIEARKNHGLVFV--KDKIF  204 (306)
T ss_dssp             EECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE--TTEEE
T ss_pred             eCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC---ccchhhcceEEEE--CCEEE
Confidence            33222211111122222  5667777654         3458899998875433321   1111112222222  67788


Q ss_pred             EEEeCC-----CcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-----c-EEEEEcCCCc
Q 010669          373 GTGTSE-----ALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKLK  431 (504)
Q Consensus       373 ~~g~~d-----g~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-----~-v~vwd~~~~~  431 (504)
                      +.|+.+     ..+.+||+.+.+  .+..+.........+.+  ++.+++.|+.+     . +.+||+.+.+
T Consensus       205 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          205 AVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            887754     468899987753  22222222222333344  67777777743     3 8899987754

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=97.25  E-value=0.00015  Score=57.14  Aligned_cols=45  Identities=13%  Similarity=0.109  Sum_probs=37.1

Q ss_pred             ccccCCCCCCCce------------------EeCCCCeeeeHHHHHHHHH-----hcCCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPV------------------VSKNSGLLFEKRLIERHIL-----DYGKCPVTGEPLTM   47 (504)
Q Consensus         2 ~c~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~-----~~~~~p~~~~~~~~   47 (504)
                      .|+|+.+.+.+|+                  +. .+||+|.+.+|.+|+.     .+.+||+++..+..
T Consensus        27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLT-KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             EETTTTEETTSCCSTTTTCCCSSSCSSCCEEES-SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cCccCChhhcCcccccccccccccCcccceecC-CCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            4999999887765                  45 5999999999999995     35689999987763

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.23  E-value=0.029  Score=52.17  Aligned_cols=186  Identities=16%  Similarity=0.238  Sum_probs=98.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEcCCCCceEEE--cccCccceeEEEEeeCCCEEEEEeCCC-----cEEEEeCCCCCCcc
Q 010669          234 SKDVIATGGVD-----TNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSADK-----TVRVWQGSEDGNYD  301 (504)
Q Consensus       234 ~~~~l~sg~~d-----g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~s~dg-----~i~iwd~~~~~~~~  301 (504)
                      ++.+++.|+.+     ..+.+||..+.+-...  +......-..+.  -++.+++.|+.++     .+.+||+.+. .+.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~-~W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSN-EWF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTT-EEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCC-eEe
Confidence            57777777754     3588899877653222  111111112222  2677777777553     5778888763 333


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEEEEeCC-------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFVTASLD-------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      .+..+.........+.+  ++..++.|+.+       ..+.+||+.+..-...-.   ..........+.+  ++.+++.
T Consensus       138 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~  210 (302)
T 2xn4_A          138 HVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE---MSTRRSGAGVGVL--NNLLYAV  210 (302)
T ss_dssp             EECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE--TTEEEEE
T ss_pred             ecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC---CccccccccEEEE--CCEEEEE
Confidence            33322221111222222  56677776643       358899998876443321   1111112222333  5778888


Q ss_pred             EeCC-----CcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCCcEEEEEeCC-----c-EEEEEcCCCc
Q 010669          375 GTSE-----ALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKLK  431 (504)
Q Consensus       375 g~~d-----g~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-----~-v~vwd~~~~~  431 (504)
                      |+.+     ..+.+||+.+.+-  +..+.........+.+  ++.+++.|+.+     . +.+||+.+.+
T Consensus       211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            8764     3689999976532  2222111111222333  67777777643     2 8999988654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.20  E-value=0.045  Score=52.82  Aligned_cols=146  Identities=14%  Similarity=0.213  Sum_probs=90.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCcceeEEecc--CCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe----------
Q 010669          276 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI----------  343 (504)
Q Consensus       276 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~----------  343 (504)
                      +|..++.+- ++.||.-++..+..++.... ..  .-+.|..+..+|+|++++..+. ..|.|..+..+.          
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~-~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNF-SRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEEC-TTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEec-CcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence            444444432 35666666654333332221 11  1235778999999999998865 578888876321          


Q ss_pred             --EEEEeecCCC-CCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEEcCCC--ceeeeee---------CCCCCeEEEE
Q 010669          344 --CLTQVSDAGT-DGRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKSQ--ANVAKFD---------GHVGAVTAIS  406 (504)
Q Consensus       344 --~~~~~~~~~~-~~~~~~v~~~~~~p---dg~~l~~g~~dg~I~iwd~~~~--~~~~~~~---------~~~~~i~~l~  406 (504)
                        ....+..... .....+|..+.|||   .+..|++-..|+.|++||+...  ++. .++         .....|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence              1112221111 11356899999999   4568999999999999999752  222 221         2235789999


Q ss_pred             EcCCCcEEEEEe--CCc-EEEE
Q 010669          407 FSENGYYLATAA--HDG-VKLW  425 (504)
Q Consensus       407 ~s~~g~~l~s~~--~d~-v~vw  425 (504)
                      |..+|-.|...+  .+| |+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            999887777755  667 7544

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=97.17  E-value=0.00017  Score=51.69  Aligned_cols=41  Identities=27%  Similarity=0.279  Sum_probs=37.6

Q ss_pred             CccccCCCCCCCceEeCCCCee-eeHHHHHHHHHhcCCCCCCCCCCC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLL-FEKRLIERHILDYGKCPVTGEPLT   46 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~   46 (504)
                      +.|+|+.+.+.+||+.| +||+ |.+.+|.+|    .+||+++++++
T Consensus        25 ~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~   66 (74)
T 4ic3_A           25 KLCKICMDRNIAIVFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT   66 (74)
T ss_dssp             TBCTTTSSSBCCEEEET-TCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred             CCCCCCCCCCCCEEEcC-CCChhHHHHhhhcC----ccCCCcCcCcc
Confidence            46999999999999997 9999 999999988    77999998876

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.05  E-value=0.088  Score=49.31  Aligned_cols=227  Identities=16%  Similarity=0.185  Sum_probs=110.8

Q ss_pred             EEEEEeCCCcEEEEcCCCCceEE-EcccCccceeEEEEeeCCCEEEEEeC----CC-------cEEEEeCCCCCCcceeE
Q 010669          237 VIATGGVDTNAVLFDRPSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSA----DK-------TVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       237 ~l~sg~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~s~----dg-------~i~iwd~~~~~~~~~~~  304 (504)
                      +++.|+.  .+..||..+++-.. .+..............++.+++.|+.    ++       .+.+||..+. .+..+.
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~   94 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS-EWVGLP   94 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT-EEEECS
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC-cEEECC
Confidence            4445553  37889988776433 11111111222223346777777773    12       1677887663 333322


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCC-------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLD-------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                      .+.........+.+  ++..++.|+.+       ..+.+||..+.+-...-.   ........ +++. .++.+++.|+.
T Consensus        95 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~-~~~~-~~~~iyv~GG~  167 (318)
T 2woz_A           95 PLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN---LPIKVYGH-NVIS-HNGMIYCLGGK  167 (318)
T ss_dssp             CBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC---CSSCEESC-EEEE-ETTEEEEECCE
T ss_pred             CCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC---CCCccccc-EEEE-ECCEEEEEcCC
Confidence            22211111122222  56777777754       258889998876443221   10111111 2222 46777777764


Q ss_pred             ------CCcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-----c-EEEEEcCCCcceeeeecCCCCC
Q 010669          378 ------EALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKLKNFRSFESSDSET  443 (504)
Q Consensus       378 ------dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-----~-v~vwd~~~~~~~~~~~~~~~~~  443 (504)
                            -..+.+||+.+.+  .+..+.........+.+  ++.+++.|+.+     . +.+||+.+.+-...-..+....
T Consensus       168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~  245 (318)
T 2woz_A          168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERS  245 (318)
T ss_dssp             ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCB
T ss_pred             CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence                  2458999987753  22222211112223333  66777777542     2 7889988754222111111111


Q ss_pred             CeeEEEECCCCCEEEEEeCc----------------EEEEEeeccCccceeE
Q 010669          444 PTNSVDFDHSGSYLAVASAD----------------IRVYQVASVKADWNCI  479 (504)
Q Consensus       444 ~v~~i~~~~~g~~l~~~~~d----------------i~vw~~~~~~~~~~~i  479 (504)
                      ....+.+  ++.+++.||.+                +.+||.  .+..|..+
T Consensus       246 ~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~  293 (318)
T 2woz_A          246 SISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED--DKKEWAGM  293 (318)
T ss_dssp             SCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEET--TTTEEEEE
T ss_pred             ceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeC--CCCEehhh
Confidence            1222222  45666666531                445554  45779887

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.02  E-value=0.074  Score=49.59  Aligned_cols=186  Identities=15%  Similarity=0.200  Sum_probs=98.7

Q ss_pred             CCCEEEEEeC----C-----CcEEEEcCCCCceEEE--cccCccceeEEEEeeCCCEEEEEeCC-----CcEEEEeCCCC
Q 010669          234 SKDVIATGGV----D-----TNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQGSED  297 (504)
Q Consensus       234 ~~~~l~sg~~----d-----g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~s~d-----g~i~iwd~~~~  297 (504)
                      ++.+++.|+.    +     ..+.+||..+.+-...  +......-..+.+  ++.+++.|+.+     ..+.+||..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5677777775    2     4588899877643221  1111111122222  67777777643     35788888763


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                       .+..+..+......-..+.+  ++..++.|+.+     ..+.+||+.+..-...-.   .........++.+  ++.++
T Consensus       148 -~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~--~~~iy  219 (308)
T 1zgk_A          148 -EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA---MNTIRSGAGVCVL--HNCIY  219 (308)
T ss_dssp             -EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEE--TTEEE
T ss_pred             -eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC---CCCccccceEEEE--CCEEE
Confidence             33333222211112222222  56777777654     458899998875433211   1111122223333  67788


Q ss_pred             EEEeCC-----CcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCCcEEEEEeCC-----c-EEEEEcCCCc
Q 010669          373 GTGTSE-----ALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKLK  431 (504)
Q Consensus       373 ~~g~~d-----g~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-----~-v~vwd~~~~~  431 (504)
                      +.|+.+     ..+.+||+.+.+-  +..+.........+.+  ++.+++.|+.+     . +.+||+.+.+
T Consensus       220 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          220 AAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             EECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            888765     5689999877532  2222211112223333  67777777643     2 7889987654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.95  E-value=0.037  Score=58.23  Aligned_cols=227  Identities=10%  Similarity=0.066  Sum_probs=116.5

Q ss_pred             cCCCEEEEEeCC----CcEEEEcCCCCceEEEc-c-----cC-ccceeEEEEee-CCCEEEEEeCCC------cEEEEeC
Q 010669          233 YSKDVIATGGVD----TNAVLFDRPSGQIVTTL-S-----GH-SKKVTSVKFVT-EGDLFLTGSADK------TVRVWQG  294 (504)
Q Consensus       233 ~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~-~-----~h-~~~v~~l~~s~-~~~~l~s~s~dg------~i~iwd~  294 (504)
                      .++.+++.||.+    ..+.+||..+++-...- .     .. ...-.+++..+ ++.+++.||.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            457778888753    45888888776543222 1     01 11122333333 677777777543      5778888


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC-CCE
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-GLI  371 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd-g~~  371 (504)
                      .+. .|..+..+...... .+++...++..++.|+.++  .+.+||..+..-.................++.+..+ +.+
T Consensus       476 ~t~-~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTR-EWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTT-EEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCC-cEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            763 34333322211111 2223323788888887655  699999998764332210000011122334555655 778


Q ss_pred             EEEEeC--C-----CcEEEEEcCCCce-----eeeeeC----CCCCeEEEEEcCCCcEEEEEeC--------Cc-EEEEE
Q 010669          372 LGTGTS--E-----ALVKIWDVKSQAN-----VAKFDG----HVGAVTAISFSENGYYLATAAH--------DG-VKLWD  426 (504)
Q Consensus       372 l~~g~~--d-----g~I~iwd~~~~~~-----~~~~~~----~~~~i~~l~~s~~g~~l~s~~~--------d~-v~vwd  426 (504)
                      ++.|+.  +     +.+.+||+.+..-     ...+..    .......+.+ .++.+++.|+.        .. |.+||
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEE
Confidence            888876  2     4588999987661     122211    1112223333 33777777763        13 99999


Q ss_pred             cCCCcceeeeecCCC-------CCCeeEEEECCCCCEEEEEeCc
Q 010669          427 LRKLKNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       427 ~~~~~~~~~~~~~~~-------~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      +.+.+-. .......       ...-.+.....+|++++.||..
T Consensus       633 ~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~  675 (695)
T 2zwa_A          633 PLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA  675 (695)
T ss_dssp             TTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEE
T ss_pred             CCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCCc
Confidence            9876432 2211100       0001334444566777777643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.94  E-value=0.044  Score=52.88  Aligned_cols=151  Identities=16%  Similarity=0.097  Sum_probs=96.9

Q ss_pred             ccCCCEEEEEeCCCcEEEEcCCCCceEEEcccC----ccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc-------
Q 010669          232 HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGH----SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY-------  300 (504)
Q Consensus       232 s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h----~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~-------  300 (504)
                      ..+|..++.+- ++.|+.-++......+.++..    -..|..+..+|+|++|+..+. ..|.|-.+..+...       
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            34566555553 467887777644334444322    235888999999999888765 47888887632100       


Q ss_pred             --ceeEEecc------CCcCeEEEEEccC---CCEEEEEeCCCeEEEEECCCCeE-EEEeec----CCCCCCCCCeEEEE
Q 010669          301 --DCKHTLKD------HTAEVQAVTVHAT---NKYFVTASLDNTWCFYDLSSGIC-LTQVSD----AGTDGRPEGYTSAA  364 (504)
Q Consensus       301 --~~~~~~~~------h~~~v~~l~~~p~---~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~----~~~~~~~~~v~~~~  364 (504)
                        ...+.+.-      ...+|..+.|||-   +..|++-..|+.|++||+..... ...+..    .+.......+.+++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence              01122221      2467999999995   46899999999999999986221 112211    01223346789999


Q ss_pred             ECCCCCEEEEEe--CCCcEEEE
Q 010669          365 FHPDGLILGTGT--SEALVKIW  384 (504)
Q Consensus       365 ~~pdg~~l~~g~--~dg~I~iw  384 (504)
                      |.++|-.|.+.+  .+|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            999988777755  77887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.93  E-value=0.32  Score=47.01  Aligned_cols=200  Identities=9%  Similarity=0.045  Sum_probs=122.1

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCC-CceEEEcccCc----cceeEEEEeeCCCEEEEEe-------CCCcEEEE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHS----KKVTSVKFVTEGDLFLTGS-------ADKTVRVW  292 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~----~~v~~l~~s~~~~~l~s~s-------~dg~i~iw  292 (504)
                      +|..=.|-. .+.|+..+ +..|+-|++.. ..+++.+..|.    ..|..-..+++.++++..|       -.|.+.+|
T Consensus       107 ~VvfWkWis-~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLY  184 (494)
T 1bpo_A          107 DVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY  184 (494)
T ss_dssp             CCCEEEEEE-TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred             CceEEEecC-CCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEe
Confidence            344444433 33444443 45799999864 35556665443    4566667778888766443       24788999


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccCC---CEEEEEeCC---CeEEEEECCCC--------eEEEEeecCCCCCCCC
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATN---KYFVTASLD---NTWCFYDLSSG--------ICLTQVSDAGTDGRPE  358 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~l~s~s~d---g~i~iwd~~~~--------~~~~~~~~~~~~~~~~  358 (504)
                      ..+.    ...+.+.+|...-..+.+..+.   ..|..+...   +.+++.++...        +....+... .+...+
T Consensus       185 S~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp-pe~~~D  259 (494)
T 1bpo_A          185 SVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP-PEAQND  259 (494)
T ss_dssp             ESTT----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC-TTSTTC
T ss_pred             eccc----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC-cccccC
Confidence            9887    4566778887655444443211   244444442   78999998543        111111111 223344


Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc
Q 010669          359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK  431 (504)
Q Consensus       359 ~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~  431 (504)
                      -..++..++.-..+..-+.-|.|++||+.++.++..-+-...+|..-+.+.+..-++.....| |.-..+....
T Consensus       260 FPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             ceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            567888888878888889999999999999999887765566666655555433444444555 5544554433

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.92  E-value=0.00049  Score=49.48  Aligned_cols=41  Identities=27%  Similarity=0.310  Sum_probs=36.5

Q ss_pred             ccccCCCCCCCceEeCCCCee-eeHHHHHHHHHhcCCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKNSGLL-FEKRLIERHILDYGKCPVTGEPLTM   47 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~   47 (504)
                      .|+|+.+.+.+||+.| +||+ |.+.+|.+    ..+||+++++++.
T Consensus        27 ~C~IC~~~~~~~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           27 LCKICMDRNIAIVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             SCSSSCSSCCCBCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCcCCCCCCCEEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence            5999999999999997 9999 99999964    4689999998864

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=96.86  E-value=0.00016  Score=56.50  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=0.0

Q ss_pred             ccccCCCCCCC-----------------ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCC
Q 010669            2 NCSISGEVPEE-----------------PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTM   47 (504)
Q Consensus         2 ~c~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   47 (504)
                      .|+|+.+.+.+                 +++.+.+||.|-+.+|.+||..+.+||+++.+...
T Consensus        50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  112 (117)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             cCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence            48888888766                 44545699999999999999999999999987654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.81  E-value=0.22  Score=46.41  Aligned_cols=188  Identities=12%  Similarity=0.192  Sum_probs=97.0

Q ss_pred             ccCCCEEEEEeC----C-------CcEEEEcCCCCceEEEcccCccc-e-eEEEEeeCCCEEEEEeCC--------CcEE
Q 010669          232 HYSKDVIATGGV----D-------TNAVLFDRPSGQIVTTLSGHSKK-V-TSVKFVTEGDLFLTGSAD--------KTVR  290 (504)
Q Consensus       232 s~~~~~l~sg~~----d-------g~i~vwd~~~~~~~~~~~~h~~~-v-~~l~~s~~~~~l~s~s~d--------g~i~  290 (504)
                      ..++.+++.|+.    +       ..+.+||..+.+-. .+.....+ . .+++. -++.+++.|+.+        ..+.
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEE
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEE
Confidence            347788888873    1       12778888776532 22211111 1 11222 266677777632        4588


Q ss_pred             EEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-C-----CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEE
Q 010669          291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-D-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA  364 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  364 (504)
                      +||..+. .+..+..+.........+.  .+++.++.|+. +     ..+.+||+.+..-...-.   .........++.
T Consensus       121 ~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~  194 (315)
T 4asc_A          121 CYDRLSF-KWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP---MQTARSLFGATV  194 (315)
T ss_dssp             EEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEE
T ss_pred             EECCCCC-cEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC---CCCchhceEEEE
Confidence            8998763 3333332222111122222  35677777776 2     468999998875433221   111111222222


Q ss_pred             ECCCCCEEEEEeCCC-----cEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC--------------c-E
Q 010669          365 FHPDGLILGTGTSEA-----LVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHD--------------G-V  422 (504)
Q Consensus       365 ~~pdg~~l~~g~~dg-----~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d--------------~-v  422 (504)
                      +  ++++++.|+.++     .+.+||+.+.+  .+..+.........+.+  ++.+++.|+.+              . +
T Consensus       195 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v  270 (315)
T 4asc_A          195 H--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDI  270 (315)
T ss_dssp             E--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             E--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcE
Confidence            2  677888887654     58889987753  22222211122233333  66777776642              2 6


Q ss_pred             EEEEcCCCc
Q 010669          423 KLWDLRKLK  431 (504)
Q Consensus       423 ~vwd~~~~~  431 (504)
                      .+||+.+.+
T Consensus       271 ~~yd~~~~~  279 (315)
T 4asc_A          271 WRYNEEEKK  279 (315)
T ss_dssp             EEEETTTTE
T ss_pred             EEecCCCCh
Confidence            778877654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.79  E-value=0.96  Score=50.30  Aligned_cols=207  Identities=13%  Similarity=0.089  Sum_probs=116.3

Q ss_pred             EEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC----------------------------
Q 010669          280 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD----------------------------  331 (504)
Q Consensus       280 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d----------------------------  331 (504)
                      ++. ..++.++|..+.....+ .+..+. -...+..++++|..+.++.+..+                            
T Consensus       709 ~v~-~~~~~LrI~~i~~~~~~-~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (1158)
T 3ei3_A          709 LAL-ANNSTLTIGTIDEIQKL-HIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS  785 (1158)
T ss_dssp             EEE-ECSSCEEEEEECCSSSE-EEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred             EEE-EcCCceEEEEecccCCe-eEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence            443 33456999887654322 233332 23567888888877765544311                            


Q ss_pred             ---------------------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEE---ECCC-CCEEEEEe----------
Q 010669          332 ---------------------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA---FHPD-GLILGTGT----------  376 (504)
Q Consensus       332 ---------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~---~~pd-g~~l~~g~----------  376 (504)
                                           +.|++.|-.+.+.+..+...    ....+.|++   |..+ ..+|++|+          
T Consensus       786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~----~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~  861 (1158)
T 3ei3_A          786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFL----QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP  861 (1158)
T ss_dssp             CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECC----TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSC
T ss_pred             cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCC----CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCC
Confidence                                 23667777766666555421    223445544   3332 46888886          


Q ss_pred             CCCcEEEEEcCCCceeeee-eCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          377 SEALVKIWDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      ..|.|.+|++..++..... ....++|++++-- +| +|++|-...|++|++...+.++ ..... -..+..+.....|+
T Consensus       862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~-~~~i~~~~l~~~~~  937 (1158)
T 3ei3_A          862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNH-YNNIMALYLKTKGD  937 (1158)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEE-CCCSCEEEEEEETT
T ss_pred             CceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeec-cccEEEEEEeccCC
Confidence            3588999999744322211 1246789888743 56 5555555559999998765444 22111 11133333334678


Q ss_pred             EEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecC
Q 010669          456 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLG  500 (504)
Q Consensus       456 ~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g  500 (504)
                      ++++|..-  +.++.+.........+.   .+.....++++.|..++
T Consensus       938 ~I~vgD~~~Sv~~~~y~~~~~~L~~~a---~D~~~~~vta~~~ld~~  981 (1158)
T 3ei3_A          938 FILVGDLMRSVLLLAYKPMEGNFEEIA---RDFNPNWMSAVEILDDD  981 (1158)
T ss_dssp             EEEEEESSBCEEEEEEETTTTEEEEEE---ECCSCBCEEEEEEEETT
T ss_pred             EEEEEEhhheEEEEEEEcCCCeEEEEE---eecccccEEEEEEEccC
Confidence            88888765  77777744332222222   22235677888776554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.78  E-value=0.39  Score=45.71  Aligned_cols=150  Identities=9%  Similarity=0.044  Sum_probs=80.7

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEE----eccCCcCeEEEEEccC---CCEEEEE-eC-------
Q 010669          266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT----LKDHTAEVQAVTVHAT---NKYFVTA-SL-------  330 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~h~~~v~~l~~~p~---~~~l~s~-s~-------  330 (504)
                      ...+.|+|.|+|+.|+++...|.|++++.... ....+..    +.........|+++|+   +..|+.+ +.       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~-~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKG-LSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTE-ECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCc-eeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            34689999999983445566799999985321 0011111    1122345789999996   4444443 22       


Q ss_pred             CCeEEEEECCCC--e--EEEEe-ecCCC-CCCCCCeEEEEECCCCCEEEEEeC-------------CCcEEEEEcCCCc-
Q 010669          331 DNTWCFYDLSSG--I--CLTQV-SDAGT-DGRPEGYTSAAFHPDGLILGTGTS-------------EALVKIWDVKSQA-  390 (504)
Q Consensus       331 dg~i~iwd~~~~--~--~~~~~-~~~~~-~~~~~~v~~~~~~pdg~~l~~g~~-------------dg~I~iwd~~~~~-  390 (504)
                      ...|..|++..+  .  ....+ ..... .........++|.|||.++++-+.             .|.|.-+|....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            235777776543  1  11111 11100 011122457999999976666433             2467667764320 


Q ss_pred             -----------eeeee-eCCCCCeEEEEEcC-CCcEEEEE
Q 010669          391 -----------NVAKF-DGHVGAVTAISFSE-NGYYLATA  417 (504)
Q Consensus       391 -----------~~~~~-~~~~~~i~~l~~s~-~g~~l~s~  417 (504)
                                 ....+ .++ .....++|+| +|.++++-
T Consensus       177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d  215 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNE  215 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEE
T ss_pred             CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEe
Confidence                       11112 233 2477899999 66655543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.62  E-value=1.2  Score=49.40  Aligned_cols=260  Identities=14%  Similarity=0.120  Sum_probs=142.1

Q ss_pred             CCCeEEEEeccC------CCEEEEEeC-CCcEEEEcCCCCceEEEccc-CccceeEEEEee--CCCEEEEEeCCCcEEEE
Q 010669          223 KPGIVSLDIHYS------KDVIATGGV-DTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVT--EGDLFLTGSADKTVRVW  292 (504)
Q Consensus       223 ~~~I~~~~~s~~------~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~--~~~~l~s~s~dg~i~iw  292 (504)
                      ...|.|+++.+.      ++++++|.. |++++|+++.+.+.+....- ......++.+..  ...+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999863      369999996 99999999987766544321 122345555443  23478899999998766


Q ss_pred             eCCCC-CCcceeE-EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC-
Q 010669          293 QGSED-GNYDCKH-TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-  369 (504)
Q Consensus       293 d~~~~-~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg-  369 (504)
                      .++.. +.....+ .+.| ..++.-..+...+..-+.+..+..+.+|.-+. +....-..  .   ..--....|+... 
T Consensus       633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~-~l~~s~l~--~---~~v~~~~~F~se~~  705 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH-KLVFSNVN--L---KEVNYMCPLNSDGY  705 (1158)
T ss_dssp             EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSS-SEEEEEBS--S---SCCCEEEEECCSSS
T ss_pred             EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCC-ceEEeccC--h---HHhceEeccCcccC
Confidence            55421 1111111 2223 34555555544444333334455555554433 22222110  1   1122344554421 


Q ss_pred             -CEEEEEeCCCcEEEEEcCCCce--eeeeeCCCCCeEEEEEcCCCcEEEEEeC---------------------------
Q 010669          370 -LILGTGTSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAH---------------------------  419 (504)
Q Consensus       370 -~~l~~g~~dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~s~~~---------------------------  419 (504)
                       .-++..+ ++.++|..+.....  +.++. -...+..++++|+...++.+..                           
T Consensus       706 ~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  783 (1158)
T 3ei3_A          706 PDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSV  783 (1158)
T ss_dssp             TTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEE
T ss_pred             CCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcc
Confidence             2344333 45588887754322  22222 2346777777776554333220                           


Q ss_pred             ----------------------Cc-EEEEEcCCCcceeeeecCCCCCCeeEEE---ECCC-CCEEEEEe-----C-c---
Q 010669          420 ----------------------DG-VKLWDLRKLKNFRSFESSDSETPTNSVD---FDHS-GSYLAVAS-----A-D---  463 (504)
Q Consensus       420 ----------------------d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~---~~~~-g~~l~~~~-----~-d---  463 (504)
                                            .+ |++.|..+.+.+..+.... ...+.+++   |..+ ..++++|.     . +   
T Consensus       784 ~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~  862 (1158)
T 3ei3_A          784 SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPK  862 (1158)
T ss_dssp             CCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCC
T ss_pred             cccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCC
Confidence                                  12 7778877777776666543 23344444   4332 47888886     1 2   


Q ss_pred             ---EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669          464 ---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       464 ---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~  497 (504)
                         |.+|++.  ....+.+....-   .+.|++++-+
T Consensus       863 ~Gri~vf~v~--~~kL~lv~~~~v---~g~v~al~~~  894 (1158)
T 3ei3_A          863 QGRIVVFQYS--DGKLQTVAEKEV---KGAVYSMVEF  894 (1158)
T ss_dssp             CEEEEEEEEE--TTEEEEEEEEEE---SSCEEEEEEE
T ss_pred             ceEEEEEEEE--CCEEEEEEEEEc---CCcCEEEeee
Confidence               7788875  234555554433   6788888766

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.61  E-value=0.086  Score=50.25  Aligned_cols=198  Identities=12%  Similarity=0.080  Sum_probs=97.0

Q ss_pred             CCCEEEEEeC-C---------CcEEEEcCCCCceEEEcccC-ccceeEEEEeeCCCEEEEEeCC----------------
Q 010669          234 SKDVIATGGV-D---------TNAVLFDRPSGQIVTTLSGH-SKKVTSVKFVTEGDLFLTGSAD----------------  286 (504)
Q Consensus       234 ~~~~l~sg~~-d---------g~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~s~d----------------  286 (504)
                      ++.+++.|+. +         ..+.+||..+.+-...-... .......+...++.+++.|+.+                
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  144 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGK  144 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCC
Confidence            5677777775 2         46888998776433221111 1111121222477888888765                


Q ss_pred             -----------------------CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC------CCeEEEE
Q 010669          287 -----------------------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL------DNTWCFY  337 (504)
Q Consensus       287 -----------------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~------dg~i~iw  337 (504)
                                             ..+.+||..+ ..+..+..+......-.++... ++.+++.|+.      ...+..|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~  222 (357)
T 2uvk_A          145 DSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST-QQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFEL  222 (357)
T ss_dssp             CHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTT-TEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEE
T ss_pred             cccchhhhhhhhccccccccCCcccEEEEeCCC-CcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEE
Confidence                                   4688999877 3444444333111110222222 5666677654      3357778


Q ss_pred             EC--CCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC----------------------CcEEEEEcCCCc--e
Q 010669          338 DL--SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE----------------------ALVKIWDVKSQA--N  391 (504)
Q Consensus       338 d~--~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d----------------------g~I~iwd~~~~~--~  391 (504)
                      |+  .+..-. .+... . .........+...++.+++.|+.+                      ..+.+||+.+.+  .
T Consensus       223 d~d~~~~~W~-~~~~~-~-~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~  299 (357)
T 2uvk_A          223 DFTGNNLKWN-KLAPV-S-SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK  299 (357)
T ss_dssp             ECC---CEEE-ECCCS-S-TTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEE
T ss_pred             EecCCCCcEE-ecCCC-C-CCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceee
Confidence            87  444322 22211 0 111111111222356777887632                      257889987653  3


Q ss_pred             eeeeeCCCCCeEEEEEcCCCcEEEEEeCC------c-EEEEEcCCCcceeeeec
Q 010669          392 VAKFDGHVGAVTAISFSENGYYLATAAHD------G-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       392 ~~~~~~~~~~i~~l~~s~~g~~l~s~~~d------~-v~vwd~~~~~~~~~~~~  438 (504)
                      +..+......-.++.+  ++.+++.|+.+      . |.++++++.+.+.....
T Consensus       300 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~  351 (357)
T 2uvk_A          300 SGELSQGRAYGVSLPW--NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE  351 (357)
T ss_dssp             EEECSSCCBSSEEEEE--TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred             CCCCCCCcccceeEEe--CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence            3333322222223333  67777777754      1 56668887776554443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.61  E-value=0.96  Score=47.94  Aligned_cols=235  Identities=11%  Similarity=0.092  Sum_probs=130.3

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      .|.++....++..|..|+. +-+..++..+++...........|.++....+|.+.+ |+.+ -+.+++..+.. +....
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~-~~~~~  267 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTP-LQHII  267 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSC-CEEEC
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCc-EEEEE
Confidence            4888888877776555654 4578888876654322111234578887776776544 4444 47788876531 11111


Q ss_pred             Ee-----ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669          305 TL-----KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA  379 (504)
Q Consensus       305 ~~-----~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg  379 (504)
                      ..     .-....|.++....+|.+- .|+..| +.++.....-................|.++.-..+|.+.+. +.+|
T Consensus       268 ~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G  344 (758)
T 3ott_A          268 HDSRNIQSLTNNIIWNIFADQEHNIW-LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG  344 (758)
T ss_dssp             CCTTCTTSCSCSCEEEEEECTTCCEE-EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE
T ss_pred             cCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc
Confidence            00     0122458888887777644 455556 55443322111111110001112346888988888886554 4555


Q ss_pred             cEEEEEcCCCc--eeeeeeC-------CCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeec-CC----CCCCe
Q 010669          380 LVKIWDVKSQA--NVAKFDG-------HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES-SD----SETPT  445 (504)
Q Consensus       380 ~I~iwd~~~~~--~~~~~~~-------~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~-~~----~~~~v  445 (504)
                       +..++..++.  ....+..       ....|.++.-..+|.+.+ |+.+|+..||..+++... +.. ..    ....|
T Consensus       345 -l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~~GL~~~~~~~~~~~~-~~~~~~~~~~~~~~v  421 (758)
T 3ott_A          345 -LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATDGSINRYDYATRQFIH-YNIVDNTGTYNTNWT  421 (758)
T ss_dssp             -EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EETTEEEEEETTTTEEEE-EEEECCC--CBSSSE
T ss_pred             -ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeCCcHhhcCcCCCcEEE-eecCCCcCCCCCceE
Confidence             6666655432  1212210       123588888888887555 445679999988765432 221 10    12458


Q ss_pred             eEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          446 NSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       446 ~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                      .++..+.+|.+.+..... +.+|+.
T Consensus       422 ~~i~~d~~g~lWigT~~~Gl~~~~~  446 (758)
T 3ott_A          422 YYIFEDTAGQLWISTCLGGIFVVDK  446 (758)
T ss_dssp             EEEEECTTSEEEEEESSSCEEEEEH
T ss_pred             EEEEEcCCCCEEEEECCCceEEEcc
Confidence            888888887765543333 888874

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.54  E-value=0.23  Score=49.17  Aligned_cols=109  Identities=11%  Similarity=0.113  Sum_probs=62.2

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEecc------CCcCeEEEEEccC---CCEEEEEeC------
Q 010669          266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD------HTAEVQAVTVHAT---NKYFVTASL------  330 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~~p~---~~~l~s~s~------  330 (504)
                      ...+.++|.|+|+++++-...+.|.+++..++ ....+..+..      ..+....|+|+|+   +..|+.+..      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g-~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESG-SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC-cEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            45679999999987776544457888876432 2222333321      2456789999995   444444432      


Q ss_pred             -------CCeEEEEECCCC--eE--EE-EeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          331 -------DNTWCFYDLSSG--IC--LT-QVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       331 -------dg~i~iwd~~~~--~~--~~-~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                             ...|.-|++..+  ..  .. .+... ..........++|.|||.++++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~-p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGL-PSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEE-CCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcC-CCCCCCCCCeEeECCCCeEEEEEC
Confidence                   235666665432  11  11 11111 111223578999999998777654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.53  E-value=0.015  Score=50.71  Aligned_cols=182  Identities=10%  Similarity=0.063  Sum_probs=100.9

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCC--Ccc-eeEEeccC--CcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE------E
Q 010669          277 GDLFLTGSADKTVRVWQGSEDG--NYD-CKHTLKDH--TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC------L  345 (504)
Q Consensus       277 ~~~l~s~s~dg~i~iwd~~~~~--~~~-~~~~~~~h--~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~------~  345 (504)
                      ..+|+....| +++.=.+....  .+. ....+ ++  =..+..++|||+|.+.++  .+|.+.-.+..+...      -
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            3456666666 65555444432  121 11222 22  236779999999886666  677776666544111      1


Q ss_pred             EEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee------eee-eCCCCCeEEEEEcCCCcEEEEEe
Q 010669          346 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV------AKF-DGHVGAVTAISFSENGYYLATAA  418 (504)
Q Consensus       346 ~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~------~~~-~~~~~~i~~l~~s~~g~~l~s~~  418 (504)
                      ..+-..   +- ....++.|+|+|.+.++  .||.|+-++-.+...-      ..+ ..-=..+..|.|.|+|.+.++. 
T Consensus        80 t~IG~~---Gw-~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-  152 (236)
T 1tl2_A           80 KKIGNG---GW-NQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-  152 (236)
T ss_dssp             EEEECS---CG-GGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred             cEeccc---cc-ccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence            111110   11 12578999999998888  5698887775332111      111 1111367999999999988777 


Q ss_pred             CCcEEEEEcCCCcc-----eeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEeec
Q 010669          419 HDGVKLWDLRKLKN-----FRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVAS  471 (504)
Q Consensus       419 ~d~v~vwd~~~~~~-----~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~  471 (504)
                      ++.++-+.......     .........-.....+.|+++|.+.++.  +.++|....
T Consensus       153 dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~~~~  208 (236)
T 1tl2_A          153 GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFYEDYP  208 (236)
T ss_dssp             TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEEEESC
T ss_pred             CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEEecCC
Confidence            33354333222111     0111111112234557799999888777  667887633

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.52  E-value=0.0029  Score=45.83  Aligned_cols=47  Identities=15%  Similarity=0.285  Sum_probs=39.3

Q ss_pred             ccccCCCCC--CCceEeCCCC-----eeeeHHHHHHHHHhcC--CCCCCCCCCCCCc
Q 010669            2 NCSISGEVP--EEPVVSKNSG-----LLFEKRLIERHILDYG--KCPVTGEPLTMDD   49 (504)
Q Consensus         2 ~c~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~   49 (504)
                      .|+|+.+-.  .+|++.| ++     |.|=+.+|++||..++  +||+++.++..+.
T Consensus        17 ~C~IC~~~~~~~~~l~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           17 ICRICHCEGDDESPLITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             CCSSSCCCCCSSSCEECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCeEcCccccCCCeeEec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            589987653  6789987 64     9999999999999886  7999999987653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.47  E-value=0.31  Score=45.47  Aligned_cols=188  Identities=14%  Similarity=0.198  Sum_probs=94.4

Q ss_pred             ccCCCEEEEEeC----CC-------cEEEEcCCCCceEEEcccCc--cceeEEEEeeCCCEEEEEeCC-------CcEEE
Q 010669          232 HYSKDVIATGGV----DT-------NAVLFDRPSGQIVTTLSGHS--KKVTSVKFVTEGDLFLTGSAD-------KTVRV  291 (504)
Q Consensus       232 s~~~~~l~sg~~----dg-------~i~vwd~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~s~s~d-------g~i~i  291 (504)
                      ..++.+++.|+.    ++       .+.+||..+.+-.. +....  ..-.+++. -++.+++.|+.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-LPPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-CSCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-CCCCCccccccceEE-ECCEEEEEcCccCCCCcccceEEE
Confidence            456788888873    12       17778887664332 21111  11112222 267777777754       34778


Q ss_pred             EeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC------CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEE
Q 010669          292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF  365 (504)
Q Consensus       292 wd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  365 (504)
                      ||..+. .+..+..+......-..+ . .++..++.|+.      -..+.+||+.+..-...-.   .........++.+
T Consensus       132 yd~~~~-~W~~~~~~p~~r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~  205 (318)
T 2woz_A          132 YDPVAA-KWSEVKNLPIKVYGHNVI-S-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP---MKTPRSMFGVAIH  205 (318)
T ss_dssp             EETTTT-EEEEECCCSSCEESCEEE-E-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE
T ss_pred             EeCCCC-CEeECCCCCCcccccEEE-E-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC---CCCCcccceEEEE
Confidence            888763 333332222111111122 2 36677777764      2358999998876443321   1111111222222


Q ss_pred             CCCCCEEEEEeCC-----CcEEEEEcCCCc--eeeeeeCCCCCeEEEEEcCCCcEEEEEeCC--------------c-EE
Q 010669          366 HPDGLILGTGTSE-----ALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHD--------------G-VK  423 (504)
Q Consensus       366 ~pdg~~l~~g~~d-----g~I~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d--------------~-v~  423 (504)
                        ++.+++.|+.+     ..+.+||+.+.+  .+..+.........+.+  ++.+++.|+.+              . +.
T Consensus       206 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~  281 (318)
T 2woz_A          206 --KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIW  281 (318)
T ss_dssp             --TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEE
T ss_pred             --CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEE
Confidence              56778887654     357789987653  22222211122222333  56777776532              2 77


Q ss_pred             EEEcCCCc
Q 010669          424 LWDLRKLK  431 (504)
Q Consensus       424 vwd~~~~~  431 (504)
                      +||+.+.+
T Consensus       282 ~yd~~~~~  289 (318)
T 2woz_A          282 KYEDDKKE  289 (318)
T ss_dssp             EEETTTTE
T ss_pred             EEeCCCCE
Confidence            78877644

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.37  E-value=0.7  Score=43.69  Aligned_cols=229  Identities=10%  Similarity=0.098  Sum_probs=119.7

Q ss_pred             CccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe----ccCCcCeEEEEEccC---CCEEEEE---eCCCe
Q 010669          264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL----KDHTAEVQAVTVHAT---NKYFVTA---SLDNT  333 (504)
Q Consensus       264 h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~~p~---~~~l~s~---s~dg~  333 (504)
                      .-...+.++|.|+|.++++--..|.|++++...+. ...+..+    .........|+++|+   +..|+..   ..++.
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~-~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR-KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc-EeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            34457899999999977766558999999765432 1222222    123456899999995   3444332   24556


Q ss_pred             EEEEECCCC----------eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-------------CCcEEEEEcCCC-
Q 010669          334 WCFYDLSSG----------ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-------------EALVKIWDVKSQ-  389 (504)
Q Consensus       334 i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-------------dg~I~iwd~~~~-  389 (504)
                      |.-|.+..+          +.+..-...   ........+.|.|||.++++.+.             .|.|.-++.... 
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~---~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPK---GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECC---CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCC---CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            766766542          111111111   11224567999999987777442             345555554321 


Q ss_pred             ---c---eeeee-eCCCCCeEEEEEcCCCcEEEEEeC-Cc-EEEEEcCCCcce------------------eeeecCCCC
Q 010669          390 ---A---NVAKF-DGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNF------------------RSFESSDSE  442 (504)
Q Consensus       390 ---~---~~~~~-~~~~~~i~~l~~s~~g~~l~s~~~-d~-v~vwd~~~~~~~------------------~~~~~~~~~  442 (504)
                         .   ....+ .+|. ....++|+|+|.++++-.. ++ =.|.-+..+...                  ..+..  +.
T Consensus       186 p~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~--~~  262 (347)
T 3das_A          186 APGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST--DE  262 (347)
T ss_dssp             CTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT--TT
T ss_pred             cCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC--CC
Confidence               0   01112 2444 4568999998876665432 22 223223333221                  11110  01


Q ss_pred             CCeeEEEECCCCCEEEEEeCcEEEE--EeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          443 TPTNSVDFDHSGSYLAVASADIRVY--QVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       443 ~~v~~i~~~~~g~~l~~~~~di~vw--~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .....++|. +|..+...-..-+||  .+.......+...-+.+.  .+.+..+.+.|+|.+
T Consensus       263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~--~gR~~dv~~~pDG~l  321 (347)
T 3das_A          263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE--YGRLRTVAPAGGDKL  321 (347)
T ss_dssp             CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT--SSCEEEEEEEETTEE
T ss_pred             CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC--CCCccEEEECCCCcE
Confidence            245667776 344444333333344  442211112223334442  578999999999965

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.33  E-value=0.11  Score=45.39  Aligned_cols=144  Identities=9%  Similarity=0.107  Sum_probs=83.5

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE------EEc-c-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV------TTL-S-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~------~~~-~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      .+..++|+|+|.+.++  .+|.++-.+..+....      ..+ . +-.. ..++.|.++|.+.++  .||.|.-++..+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5669999999997777  6787777776542211      111 0 1111 478899999987766  569888777643


Q ss_pred             CC--Cccee-EEe-ccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeE------EEEeecCCCCCCCCCeEEEEEC
Q 010669          297 DG--NYDCK-HTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC------LTQVSDAGTDGRPEGYTSAAFH  366 (504)
Q Consensus       297 ~~--~~~~~-~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~  366 (504)
                      .+  .+.-. ..+ ..-=..+..|.+.|+|.+.++.  |+.++-+..-++..      ...+..    ..-...+.+.|.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~----~g~~~yr~l~f~  190 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQ----GGWDTFKFLFFS  190 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEES----SSGGGEEEEEEC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceecc----CCcceEEEEEEC
Confidence            22  11111 111 1112467999999999988777  77754332221110      011100    112245567799


Q ss_pred             CCCCEEEEEeCCCcE
Q 010669          367 PDGLILGTGTSEALV  381 (504)
Q Consensus       367 pdg~~l~~g~~dg~I  381 (504)
                      ++|.++++.  +|.+
T Consensus       191 ~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          191 SVGTLFGVQ--GGKF  203 (236)
T ss_dssp             TTSCEEEEE--TTEE
T ss_pred             CCCcEEEEe--CCeE
Confidence            999888776  6643

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.31  E-value=0.68  Score=42.92  Aligned_cols=176  Identities=10%  Similarity=0.066  Sum_probs=99.8

Q ss_pred             EEeccCCCEEEEEeCC--------------CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe--CCCcEEEE
Q 010669          229 LDIHYSKDVIATGGVD--------------TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS--ADKTVRVW  292 (504)
Q Consensus       229 ~~~s~~~~~l~sg~~d--------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s--~dg~i~iw  292 (504)
                      --++++|++|+-....              ..|+..++..++... +...    .+..|++++++|+-..  .++.-.||
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD----PCIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS----CEEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC----CccEEEEeCCEEEEEeecCCCCceEE
Confidence            4467888877766543              356666776554322 2211    1236788888887665  34445555


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI  371 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~  371 (504)
                      .+...+  .....+..+..    ..++++++.|+..+. ...|...++..+.....+.     +   .. ...++|++.+
T Consensus       133 ~~~~dG--s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-----~---~~-~~~~~P~g~~  197 (302)
T 3s25_A          133 RIRIDG--EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD-----C---NC-YKPVVLDDTN  197 (302)
T ss_dssp             EEETTS--CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC-----S---CE-EEEEEEETTE
T ss_pred             EEECCC--CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC-----C---Cc-cceeeecCCE
Confidence            444332  22233333322    456778888887765 6788898988776543332     1   12 2345688887


Q ss_pred             EEEEeCC--CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC--c-EEEEEcCC
Q 010669          372 LGTGTSE--ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRK  429 (504)
Q Consensus       372 l~~g~~d--g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d--~-v~vwd~~~  429 (504)
                      |+-...+  ..|..-++.... ...+..  ..+  ..|+|+|.+|+.+...  . |..-++..
T Consensus       198 iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          198 VYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             EEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             EEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            7765543  356666665433 333321  233  3477888888776433  3 66667654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.22  E-value=0.22  Score=55.45  Aligned_cols=198  Identities=13%  Similarity=0.171  Sum_probs=114.9

Q ss_pred             EEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEecc
Q 010669          229 LDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD  308 (504)
Q Consensus       229 ~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  308 (504)
                      .-.+|..+.+|.-. ..++.|||+.+...+..+.- ...|.-=.|-.+..+ +..+ +..|.-|++.+..  .+...+.-
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l-~lVT-~~aVyHW~~~~~s--~P~k~fdR  144 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTV-ALVT-DNAVYHWSMEGES--QPVKMFDR  144 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCee-EEEc-CCeEEEeccCCCC--ccHHHHhc
Confidence            33567677666654 67899999998877776664 345666666544443 3222 3479999996532  34444433


Q ss_pred             C----CcCeEEEEEccCCCEEEEEe-------CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC---CCCEEEE
Q 010669          309 H----TAEVQAVTVHATNKYFVTAS-------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP---DGLILGT  374 (504)
Q Consensus       309 h----~~~v~~l~~~p~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---dg~~l~~  374 (504)
                      |    ...|..-..+++.++++..|       -.|.+.+|.++.+... .+     .||......+....   ...+++.
T Consensus       145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~i-----egha~~F~~~~~~~~~~~~~l~~f  218 (1630)
T 1xi4_A          145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PI-----EGHAASFAQFKMEGNAEESTLFCF  218 (1630)
T ss_pred             chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hh-----hHhHhhhheeccCCCCCCceEEEE
Confidence            3    45677777888888776544       2477888888765321 11     12222222222211   1122222


Q ss_pred             EeC---CCcEEEEEcCCC---ceee------eeeC---CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec
Q 010669          375 GTS---EALVKIWDVKSQ---ANVA------KFDG---HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       375 g~~---dg~I~iwd~~~~---~~~~------~~~~---~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~  438 (504)
                      +..   .+.++|.++...   .+..      .+..   -..-..++..++.-..+..-+..| |.+||+.++.++..-..
T Consensus       219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri  298 (1630)
T 1xi4_A          219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI  298 (1630)
T ss_pred             EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccc
Confidence            221   268888888542   1111      1111   123445677777666777777888 99999999988765544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.15  E-value=0.72  Score=45.59  Aligned_cols=109  Identities=12%  Similarity=0.130  Sum_probs=63.3

Q ss_pred             cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC---CCCCCeEEEEECCC---CCEEEEEeC-------
Q 010669          311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD---GRPEGYTSAAFHPD---GLILGTGTS-------  377 (504)
Q Consensus       311 ~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~v~~~~~~pd---g~~l~~g~~-------  377 (504)
                      ...+.|+|.|+|+++++-...+.|.+++..++............   ........++|+|+   +..|.+...       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45689999999987666544457988887655443222111110   12456789999995   444444332       


Q ss_pred             ------CCcEEEEEcCCC-------ceeee-eeC-CCCCeEEEEEcCCCcEEEEEeC
Q 010669          378 ------EALVKIWDVKSQ-------ANVAK-FDG-HVGAVTAISFSENGYYLATAAH  419 (504)
Q Consensus       378 ------dg~I~iwd~~~~-------~~~~~-~~~-~~~~i~~l~~s~~g~~l~s~~~  419 (504)
                            ...|.-|++...       +.+.. +.. .......|+|.|||.+.++.++
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  234555655322       11211 221 1235789999999987777553

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.08  E-value=0.0065  Score=56.98  Aligned_cols=52  Identities=23%  Similarity=0.362  Sum_probs=47.5

Q ss_pred             CccccCCCCCCCceEeCCCCee--eeHHHHHHHHHhcCC--CCCCCCCCCCCcccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLL--FEKRLIERHILDYGK--CPVTGEPLTMDDIVP   52 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~   52 (504)
                      +.|+||+..++.||=+..|.|.  |+...+.++.++.++  ||+|++.+..+||+-
T Consensus       250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~I  305 (371)
T 3i2d_A          250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAI  305 (371)
T ss_dssp             SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred             ecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence            4799999999999999999997  999999999988875  999999999999953

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=95.95  E-value=0.0033  Score=45.47  Aligned_cols=41  Identities=15%  Similarity=0.209  Sum_probs=37.0

Q ss_pred             ccccCCCCCCCceEeCCCCee-eeHHHHHHHHHhcCCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKNSGLL-FEKRLIERHILDYGKCPVTGEPLTM   47 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~   47 (504)
                      .|.|+.+.+.+||+.| +||. |++.++.++    .+||+++.++..
T Consensus        20 ~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           20 LCMVCCEEEINSTFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             BCTTTSSSBCCEEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             EeEEeCcccCcEEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            6999999999999997 9999 999999876    389999998775

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.87  E-value=0.013  Score=41.43  Aligned_cols=45  Identities=11%  Similarity=0.244  Sum_probs=39.7

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhc--CCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY--GKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~   46 (504)
                      .|+|+-++...-...+.+||.|=+.+|.+||+.+  .+||.++.+..
T Consensus        17 ~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             BCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             cCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            5999999987667777899999999999999988  68999998776

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.029  Score=53.05  Aligned_cols=196  Identities=12%  Similarity=0.137  Sum_probs=102.2

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccC-ccceeEEEEe--e-CCCEEEEE-eCCCcEEEEeCCCCCCcceeEEecc-
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGH-SKKVTSVKFV--T-EGDLFLTG-SADKTVRVWQGSEDGNYDCKHTLKD-  308 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s--~-~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~-  308 (504)
                      +.++++++.||.|+-+|..+|+...+++.. ..++....-.  + ++..++.. +.||.|..++..++ ..+....... 
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G-~~~~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG-LQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE-EEEEEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC-cEEeeeccccc
Confidence            347888999999999999999998888754 1222221100  1 22333333 58999999998764 1111111111 


Q ss_pred             -CCcCeEE---EEE-----ccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCC--CCeEEEEEC-----CCCCEE
Q 010669          309 -HTAEVQA---VTV-----HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAAFH-----PDGLIL  372 (504)
Q Consensus       309 -h~~~v~~---l~~-----~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~-----pdg~~l  372 (504)
                       ...++..   ...     ...+..+++|+.+|.+.-.|+.+|+.+..+......++-  ....|....     ..+..+
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v  168 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI  168 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence             1122221   000     014568899999999999999999999888643211100  001111111     123567


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeee-----CCCCC--e-EEEEEcCCCcEEEEEeCCc-EEEEEcCCCccee
Q 010669          373 GTGTSEALVKIWDVKSQANVAKFD-----GHVGA--V-TAISFSENGYYLATAAHDG-VKLWDLRKLKNFR  434 (504)
Q Consensus       373 ~~g~~dg~I~iwd~~~~~~~~~~~-----~~~~~--i-~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~  434 (504)
                      +.|..+..+.+.+ ++++ +-.+.     .....  + .+-.++.++.+++ ++.|+ |..+|..++..+.
T Consensus       169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~-~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIA-PFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEE-EETTTEEEEECSTTCCEEE
T ss_pred             EEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEE-ECCCCEEEEEECCCCcEEE
Confidence            7777777777766 4453 21111     10000  0 0000112355544 45555 7777777776543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.71  E-value=1.3  Score=41.03  Aligned_cols=205  Identities=7%  Similarity=0.036  Sum_probs=111.4

Q ss_pred             cCCCEEEEEe--CCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC--------------CcEEEEeCCC
Q 010669          233 YSKDVIATGG--VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD--------------KTVRVWQGSE  296 (504)
Q Consensus       233 ~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d--------------g~i~iwd~~~  296 (504)
                      .++..|....  .++.|+..+..... ...+...    .+--+++++.+|+-+...              ..|+..++..
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            4566665543  35666666654333 3333321    123457888887766543              3566666655


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEe----CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS----LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      ..    ...+..  ..  +..|+++++.|+...    .+..|...++..... ..+...       .+  ..++++++.|
T Consensus        98 ~~----~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~-------~~--~~~~~~g~~i  159 (302)
T 3s25_A           98 HG----STVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNH-------YL--FTCNTSDRYF  159 (302)
T ss_dssp             CC----CEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESS-------CC--CCSEEETTEE
T ss_pred             Cc----ceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCC-------Cc--eEeeEECCEE
Confidence            31    122221  11  236677888888776    344566677765443 333211       11  3456777777


Q ss_pred             EEEeC-CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c--EEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669          373 GTGTS-EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G--VKLWDLRKLKNFRSFESSDSETPTNSV  448 (504)
Q Consensus       373 ~~g~~-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~--v~vwd~~~~~~~~~~~~~~~~~~v~~i  448 (504)
                      +-.+. ...|.+.++..+.....+.+   ... ..+.|++.+|+-...+ +  |..-++.... ...+..    ..+  .
T Consensus       160 y~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~----~~~--~  228 (302)
T 3s25_A          160 YYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE----ANI--E  228 (302)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC----SCE--E
T ss_pred             EEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC----CCc--c
Confidence            65544 67888888766544333332   222 3456888888776544 2  6666666544 233321    223  3


Q ss_pred             EECCCCCEEEEEeCc--EEEEEeec
Q 010669          449 DFDHSGSYLAVASAD--IRVYQVAS  471 (504)
Q Consensus       449 ~~~~~g~~l~~~~~d--i~vw~~~~  471 (504)
                      .|+|++.+|+.+...  -.|+.+..
T Consensus       229 ~~~~~g~~Iy~~~~~~~~~i~~~~~  253 (302)
T 3s25_A          229 HYNVYGSLIFYQRGGDNPALCVVKN  253 (302)
T ss_dssp             EEEEETTEEEEEECSSSCEEEEEET
T ss_pred             eEEECCCEEEEEECCCCcEEEEEEC
Confidence            478888888876432  55665543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.67  E-value=2  Score=42.93  Aligned_cols=235  Identities=10%  Similarity=0.166  Sum_probs=127.2

Q ss_pred             CCCCCeEEEEeccCCCEEEEEe-CCCcEEEEcCCCCceEEEcc-cCccceeEEEEe--eCCCEEEEEeC-------CCcE
Q 010669          221 TSKPGIVSLDIHYSKDVIATGG-VDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFV--TEGDLFLTGSA-------DKTV  289 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s--~~~~~l~s~s~-------dg~i  289 (504)
                      .|...+.--.=..||++|+.-. .+..|-..++...++-..+. .....+..+.|-  |+..+++.++.       ||..
T Consensus       128 ~HHp~~S~tdg~yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~  207 (638)
T 3sbq_A          128 CHHPHISMTDGKYDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV  207 (638)
T ss_dssp             CCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             cCCCcccccCCeeeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc
Confidence            3433333333335788888776 46678888888877655554 245668888886  67778887764       3331


Q ss_pred             EEEeCCCCCCcceeEEeccCC----------cCeEEEEEccCCCEEEEEeCCC---------------eEEEEECC----
Q 010669          290 RVWQGSEDGNYDCKHTLKDHT----------AEVQAVTVHATNKYFVTASLDN---------------TWCFYDLS----  340 (504)
Q Consensus       290 ~iwd~~~~~~~~~~~~~~~h~----------~~v~~l~~~p~~~~l~s~s~dg---------------~i~iwd~~----  340 (504)
                        ..++....+.....+.+.+          +....+...+++.+.++.+.+.               .+.++++.    
T Consensus       208 --~~~~~~~~y~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~  285 (638)
T 3sbq_A          208 --FDLQDENSYTMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEA  285 (638)
T ss_dssp             --CCTTSTTEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHH
T ss_pred             --cccCChhhceEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHH
Confidence              1111111111111111111          1122233456677777665421               24444431    


Q ss_pred             ---CCe-------EEEEeecCC----CC------CCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCce--------
Q 010669          341 ---SGI-------CLTQVSDAG----TD------GRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQAN--------  391 (504)
Q Consensus       341 ---~~~-------~~~~~~~~~----~~------~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~~~--------  391 (504)
                         .|+       -+..+....    ..      .-......+.++|||+++++++ .+.++.++|++....        
T Consensus       286 ~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~  365 (638)
T 3sbq_A          286 AVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLAD  365 (638)
T ss_dssp             HHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSC
T ss_pred             HHhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccC
Confidence               010       011111000    00      0113456789999999888765 578999999874211        


Q ss_pred             -----eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC----------cceeeeecCCCCCCeeEEEE-----
Q 010669          392 -----VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL----------KNFRSFESSDSETPTNSVDF-----  450 (504)
Q Consensus       392 -----~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~----------~~~~~~~~~~~~~~v~~i~~-----  450 (504)
                           ..... -.-.....+|.++|.-..+.--|+ |.-|++.+.          ..+..+..+   ..+-.+.-     
T Consensus       366 ~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~---YqpGH~~~~~get  441 (638)
T 3sbq_A          366 PRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH---YQPGHLHASLCET  441 (638)
T ss_dssp             GGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS---SCEEEEEETTTTS
T ss_pred             cccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc---cCCcccccCCCcc
Confidence                 11222 223567889999996555666777 999998753          234444443   22333333     


Q ss_pred             -CCCCCEEEEEe
Q 010669          451 -DHSGSYLAVAS  461 (504)
Q Consensus       451 -~~~g~~l~~~~  461 (504)
                       .++|++|++..
T Consensus       442 ~~~dGk~lv~ln  453 (638)
T 3sbq_A          442 NEADGKWLVALS  453 (638)
T ss_dssp             TTCCSCEEEEEE
T ss_pred             CCCCccEEEEec
Confidence             57899999874

>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A

Probab=95.61  E-value=0.016  Score=42.37  Aligned_cols=53  Identities=34%  Similarity=0.466  Sum_probs=46.1

Q ss_pred             CccccCCCCCCCceEeCCCC-----eeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSG-----LLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      +.|+|+-+.|++-|.-+-++     ..|.+..+.+.+.+++.-|.|+||++..-+|..
T Consensus        28 l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~HPLSREpit~sMIv~~   85 (102)
T 2kkx_A           28 IQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLPHPLTREPITASIIVKH   85 (102)
T ss_dssp             GCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCCCTTTCCCCCTTTEECT
T ss_pred             cCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCCCCCccCCCCHhhEech
Confidence            35999999999999864443     479999999999999999999999999888765

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=95.59  E-value=0.015  Score=54.46  Aligned_cols=51  Identities=16%  Similarity=0.288  Sum_probs=47.1

Q ss_pred             CccccCCCCCCCceEeCCCCee--eeHHHHHHHHHhcCC--CCCCCCCCCCCccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLL--FEKRLIERHILDYGK--CPVTGEPLTMDDIV   51 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~   51 (504)
                      +.|+||+..++.|+=+..|.|.  |+...+.++.++.++  ||+|++.+..+||+
T Consensus       216 L~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~  270 (360)
T 4fo9_A          216 LMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI  270 (360)
T ss_dssp             SBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred             eeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence            4699999999999999999997  999999999998875  99999999999995

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.53  E-value=0.011  Score=41.28  Aligned_cols=41  Identities=10%  Similarity=0.221  Sum_probs=36.5

Q ss_pred             ccccCCCCCCCceEeCCCCee-eeHHHHHHHHHhcCCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKNSGLL-FEKRLIERHILDYGKCPVTGEPLTM   47 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~   47 (504)
                      .|.|+.+.+.++|+.| +||. |.+.++.+    ..+||+++.++..
T Consensus        17 ~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           17 DCVVCQNGTVNWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSSSSSCCCCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCcCcCCCCEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            5999999999999998 9999 99999984    5789999987764

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=95.28  E-value=2.2  Score=40.81  Aligned_cols=192  Identities=11%  Similarity=0.102  Sum_probs=109.7

Q ss_pred             CCeEEEEeccCCCEEE--EEeC-------------CCcEEEEcCCCC--ceEEEccc------CccceeEEEEe---eC-
Q 010669          224 PGIVSLDIHYSKDVIA--TGGV-------------DTNAVLFDRPSG--QIVTTLSG------HSKKVTSVKFV---TE-  276 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~--sg~~-------------dg~i~vwd~~~~--~~~~~~~~------h~~~v~~l~~s---~~-  276 (504)
                      -.|..+...+.+++=+  +|-.             -..|.+||+.++  +.++++.-      ....+..+.+.   ++ 
T Consensus        87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~  166 (381)
T 3q6k_A           87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG  166 (381)
T ss_dssp             SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred             EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence            3577888877666322  2211             125889999999  88887753      23457888887   22 


Q ss_pred             ---CCEEEEE-eCCCcEEEEeCCCCCCcceeEE-----------eccC----CcCeEEEEEccC----CCEEEEEeCCC-
Q 010669          277 ---GDLFLTG-SADKTVRVWQGSEDGNYDCKHT-----------LKDH----TAEVQAVTVHAT----NKYFVTASLDN-  332 (504)
Q Consensus       277 ---~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~-----------~~~h----~~~v~~l~~~p~----~~~l~s~s~dg-  332 (504)
                         +.+++.+ +..+-|.|+|+.++..++..+.           +.+.    ...|..|+++|+    ++.|.-....+ 
T Consensus       167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~  246 (381)
T 3q6k_A          167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI  246 (381)
T ss_dssp             TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS
T ss_pred             CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC
Confidence               3344444 3567899999988654433211           1111    236788888887    56666555444 


Q ss_pred             eEEEEE---CCCC---eEEEEeecCCCCCCCCCeEEEEEC-CCCCEEEEEeCCCcEEEEEcCC-C---ceeeeee--CCC
Q 010669          333 TWCFYD---LSSG---ICLTQVSDAGTDGRPEGYTSAAFH-PDGLILGTGTSEALVKIWDVKS-Q---ANVAKFD--GHV  399 (504)
Q Consensus       333 ~i~iwd---~~~~---~~~~~~~~~~~~~~~~~v~~~~~~-pdg~~l~~g~~dg~I~iwd~~~-~---~~~~~~~--~~~  399 (504)
                      .+.-..   ++..   ..+..+.   ..+....-..+++. .+|.++++--..+.|..|+... .   .....+.  ..-
T Consensus       247 ~ly~V~T~~L~~~~~~~~v~~~G---~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l  323 (381)
T 3q6k_A          247 KVYSVNTKELKQKGGKLNPELLG---NRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRF  323 (381)
T ss_dssp             EEEEEEHHHHSSTTCCCCCEEEE---ECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTC
T ss_pred             cEEEEEHHHhhCcchhhceEEee---ecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCc
Confidence            222222   1111   1112221   11112334456776 6888888888889999999875 1   1222221  122


Q ss_pred             CCeEEEEEcCCCcEEEEEe
Q 010669          400 GAVTAISFSENGYYLATAA  418 (504)
Q Consensus       400 ~~i~~l~~s~~g~~l~s~~  418 (504)
                      ..+..+.+..+|.+.+..+
T Consensus       324 ~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          324 VFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             CSEEEEEECTTSCEEEEEC
T ss_pred             cccCeEEECCCCeEEEEEC
Confidence            3577888877776555543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.18  E-value=2.7  Score=41.46  Aligned_cols=237  Identities=9%  Similarity=0.062  Sum_probs=120.9

Q ss_pred             eEEEEeccCCC-EEEEEeCCCcEEEEcCCCC---ceEEEcc---------cCccceeEEEEeeC----CCEEEEEeC--C
Q 010669          226 IVSLDIHYSKD-VIATGGVDTNAVLFDRPSG---QIVTTLS---------GHSKKVTSVKFVTE----GDLFLTGSA--D  286 (504)
Q Consensus       226 I~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~---~~~~~~~---------~h~~~v~~l~~s~~----~~~l~s~s~--d  286 (504)
                      -+.|+|.|+|. .|+++...|.|++++....   ..+..+.         ........|+|+|+    +.+.++-+.  +
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~   95 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE   95 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence            57899999996 4555678899999975422   1222221         11356789999985    443333221  1


Q ss_pred             ----------CcEEEEeCCCC--C-----CcceeEEec--cCCcCeEEEEEccCCCEEEEEeCCC---------------
Q 010669          287 ----------KTVRVWQGSED--G-----NYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDN---------------  332 (504)
Q Consensus       287 ----------g~i~iwd~~~~--~-----~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg---------------  332 (504)
                                ..|.-|.+..+  .     ..+.+..+.  ........|.|.|||.++++.+..+               
T Consensus        96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~  175 (463)
T 2wg3_C           96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDF  175 (463)
T ss_dssp             SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSC
T ss_pred             CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCC
Confidence                      13434555421  1     112222222  1122357899999998777766533               


Q ss_pred             --eEEEEECCCCe---------------------EEEEeecCCCCCCCCCeEEEEECCC-----CC-EEEEEeCCC----
Q 010669          333 --TWCFYDLSSGI---------------------CLTQVSDAGTDGRPEGYTSAAFHPD-----GL-ILGTGTSEA----  379 (504)
Q Consensus       333 --~i~iwd~~~~~---------------------~~~~~~~~~~~~~~~~v~~~~~~pd-----g~-~l~~g~~dg----  379 (504)
                        .|.-.|.+...                     .+...      ++. ....++|+|.     |. ++..+...|    
T Consensus       176 ~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~------G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~  248 (463)
T 2wg3_C          176 TGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAH------GLH-DPGRCAVDRHPTDININLTILCSDSNGKNRS  248 (463)
T ss_dssp             TTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEE------CCS-SCCBEEEESSCSSTTCSEEEEEECC------
T ss_pred             CeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEE------CCC-CcceEEECCCCCCcccceEEEecccCCCCCC
Confidence              23333333210                     00000      111 2457899996     44 344433212    


Q ss_pred             cEEEEEcCCC------ceeeeeeCCC-CCeEEEEEcCC-------CcEEEEEeCCc-EEEEEcCCCcce---eee-ec--
Q 010669          380 LVKIWDVKSQ------ANVAKFDGHV-GAVTAISFSEN-------GYYLATAAHDG-VKLWDLRKLKNF---RSF-ES--  438 (504)
Q Consensus       380 ~I~iwd~~~~------~~~~~~~~~~-~~i~~l~~s~~-------g~~l~s~~~d~-v~vwd~~~~~~~---~~~-~~--  438 (504)
                      .-.|..+..+      .++..+..|. .+++.+.|...       |.+|+..- .+ |....+......   ..+ ..  
T Consensus       249 ~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~-~g~i~~~~~~~~~~~~~~~~~~~g~~  327 (463)
T 2wg3_C          249 SARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDR-NGNFLTLQQSPVTKQWQEKPLCLGTS  327 (463)
T ss_dssp             CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEET-TSCEEEEEC-----CCEEEEECEEET
T ss_pred             CCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecC-CCcEEEEEeCCCCceeeEEEeecCCc
Confidence            1234444333      2455554332 47888888542       34555433 35 655555433211   111 00  


Q ss_pred             ----CCCCCCeeEEEECCCCCEEEEEe-------CcEEEEEee
Q 010669          439 ----SDSETPTNSVDFDHSGSYLAVAS-------ADIRVYQVA  470 (504)
Q Consensus       439 ----~~~~~~v~~i~~~~~g~~l~~~~-------~di~vw~~~  470 (504)
                          ......+..+.+.|+|.++++..       .+.+||.+.
T Consensus       328 ~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~  370 (463)
T 2wg3_C          328 GSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV  370 (463)
T ss_dssp             TSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred             ccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence                11135789999999999888776       348999985

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.97  E-value=3.4  Score=41.38  Aligned_cols=240  Identities=11%  Similarity=0.148  Sum_probs=134.4

Q ss_pred             EEEEEeCCCcEEEEcCCCCceEEEcccC-------------------------cccee--EEEEe---eCCCEEEEEe-C
Q 010669          237 VIATGGVDTNAVLFDRPSGQIVTTLSGH-------------------------SKKVT--SVKFV---TEGDLFLTGS-A  285 (504)
Q Consensus       237 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h-------------------------~~~v~--~l~~s---~~~~~l~s~s-~  285 (504)
                      .+.+|+..|.|+|+-+.+++.+..+.-.                         .+...  .+.+.   -||++|+.-. .
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            3678889999999999998887765311                         11111  23332   2667777765 4


Q ss_pred             CCcEEEEeCCCCCCcceeEEec-cCCcCeEEEEEc--cCCCEEEEEeC-------CCeE------------EEEECCCCe
Q 010669          286 DKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVH--ATNKYFVTASL-------DNTW------------CFYDLSSGI  343 (504)
Q Consensus       286 dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~--p~~~~l~s~s~-------dg~i------------~iwd~~~~~  343 (504)
                      +..|-..+++.-   ++...+. .....+.++.|.  |+..|++.++.       ||..            ...|..+.+
T Consensus       152 n~RvAri~l~~~---~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~  228 (638)
T 3sbq_A          152 NSRVARIRLDIM---KCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETME  228 (638)
T ss_dssp             TTEEEEEETTTT---EEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCS
T ss_pred             CcceEEEECCcE---eeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccE
Confidence            555666666553   3433332 345678888886  67778888764       3331            112333332


Q ss_pred             EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC---------------cEEEEEc----------------------
Q 010669          344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA---------------LVKIWDV----------------------  386 (504)
Q Consensus       344 ~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg---------------~I~iwd~----------------------  386 (504)
                      ...++...      .....+...++|.+.++.+.+.               .+.++|+                      
T Consensus       229 v~~Qv~v~------gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V  302 (638)
T 3sbq_A          229 MAFQVIVD------GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV  302 (638)
T ss_dssp             EEEEEEES------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred             EEEEEEcC------CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence            22222111      1233455567777776654332               3555554                      


Q ss_pred             ---CC----CceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCcce---------ee-eecCCCCCCeeE
Q 010669          387 ---KS----QANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNF---------RS-FESSDSETPTNS  447 (504)
Q Consensus       387 ---~~----~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~~~---------~~-~~~~~~~~~v~~  447 (504)
                         +.    +..+..+-.-......+.++|||++++.++.-.  +.++|+++....         .. ............
T Consensus       303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH  382 (638)
T 3sbq_A          303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH  382 (638)
T ss_dssp             EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred             EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence               22    111111111123455688999999999988764  999999853221         00 011112456788


Q ss_pred             EEECCCCCEEEEEeCc--EEEEEeecc------CccceeEEEccCC
Q 010669          448 VDFDHSGSYLAVASAD--IRVYQVASV------KADWNCIKTFPDL  485 (504)
Q Consensus       448 i~~~~~g~~l~~~~~d--i~vw~~~~~------~~~~~~i~~~~~h  485 (504)
                      .+|+++|....+---|  |.-|++...      .+.+..+..++-|
T Consensus       383 t~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~  428 (638)
T 3sbq_A          383 TTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH  428 (638)
T ss_dssp             EEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS
T ss_pred             EEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc
Confidence            9999999433333345  999998542      2234566666665

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.84  E-value=0.4  Score=50.32  Aligned_cols=154  Identities=9%  Similarity=0.108  Sum_probs=82.6

Q ss_pred             CCCEEEEEeCCC------cEEEEcCCCCceEEEcccCcc-ceeEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCCcceeE
Q 010669          234 SKDVIATGGVDT------NAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       234 ~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~  304 (504)
                      ++.+++.||.++      .+.+||..+.+-...-..... .-.+++...++.+++.||.++  .+.+||..+. .|..+.
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~-~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE-IFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT-EEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCC-ceEEcc
Confidence            677778877543      478888876543221111111 112223223778888887655  6899998773 333332


Q ss_pred             E---eccCCcCeEEEEEccC-CCEEEEEeC--C-----CeEEEEECCCCeE-----EEEeecCCCCCCCCCeEEEEECCC
Q 010669          305 T---LKDHTAEVQAVTVHAT-NKYFVTASL--D-----NTWCFYDLSSGIC-----LTQVSDAGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       305 ~---~~~h~~~v~~l~~~p~-~~~l~s~s~--d-----g~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~pd  368 (504)
                      .   .........++.+..+ +..++.|+.  +     ..+.+||+.+...     ...+..... . ...-.+++...+
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~-~-~R~~~~~~~~~~  607 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL-F-QRYGSQIKYITP  607 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG-G-CCBSCEEEEEET
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC-C-CcccceEEEeCC
Confidence            2   1111122233445544 667777765  2     3588999988761     222211000 0 111123333344


Q ss_pred             CCEEEEEeC--------CCcEEEEEcCCCc
Q 010669          369 GLILGTGTS--------EALVKIWDVKSQA  390 (504)
Q Consensus       369 g~~l~~g~~--------dg~I~iwd~~~~~  390 (504)
                      +.+++.|+.        ...|.+||+.+.+
T Consensus       608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          608 RKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             TEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             CEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            788888874        3468999998764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=94.69  E-value=3.2  Score=39.81  Aligned_cols=263  Identities=9%  Similarity=0.042  Sum_probs=128.1

Q ss_pred             CCeEEEEecc--CCCEEEEEeCCC----cEEEEcCCCCceEEEccc--------------CccceeEEEEee-C-CCEEE
Q 010669          224 PGIVSLDIHY--SKDVIATGGVDT----NAVLFDRPSGQIVTTLSG--------------HSKKVTSVKFVT-E-GDLFL  281 (504)
Q Consensus       224 ~~I~~~~~s~--~~~~l~sg~~dg----~i~vwd~~~~~~~~~~~~--------------h~~~v~~l~~s~-~-~~~l~  281 (504)
                      ..|.+|+++|  .+.+.+ ++..|    .|...+ ..++....+..              ....|.++++.| + ...+.
T Consensus        55 ~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             SEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            4699999998  444444 44444    344332 23333222221              112577888886 2 45566


Q ss_pred             EEeCCCcEEEEeCCCCCCcceeEEecc----------------CCcCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCeE
Q 010669          282 TGSADKTVRVWQGSEDGNYDCKHTLKD----------------HTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGIC  344 (504)
Q Consensus       282 s~s~dg~i~iwd~~~~~~~~~~~~~~~----------------h~~~v~~l~~~p~-~~~l~s~s~dg~i~iwd~~~~~~  344 (504)
                      .++..+.|...+ +.+..+..+..+..                ....+.+|.++|. ...++.+..++.|...+ +.++.
T Consensus       133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t  210 (394)
T 3b7f_A          133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD  210 (394)
T ss_dssp             EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred             EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence            665555554442 22233333321111                1235789999884 44555555455444432 22333


Q ss_pred             EEEeecCCCCC--------CCCCeEEEEECCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeC--CC---CCeEEEEEcC-
Q 010669          345 LTQVSDAGTDG--------RPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFDG--HV---GAVTAISFSE-  409 (504)
Q Consensus       345 ~~~~~~~~~~~--------~~~~v~~~~~~pd-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~--~~---~~i~~l~~s~-  409 (504)
                      ...+.......        ....+.++.++|+ ...+.+++..| |...+- .++....+..  ..   ..+.++.++| 
T Consensus       211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~  288 (394)
T 3b7f_A          211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQR  288 (394)
T ss_dssp             CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred             ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCC
Confidence            33222100000        0134889999995 45666666555 444332 2332222221  11   2456788876 


Q ss_pred             CCcEEEEEeC-----------Cc-EEEEEcCC-Ccceeeeec--CCCCC----CeeEEEECCC-CCEEEEEeCcEEEEEe
Q 010669          410 NGYYLATAAH-----------DG-VKLWDLRK-LKNFRSFES--SDSET----PTNSVDFDHS-GSYLAVASADIRVYQV  469 (504)
Q Consensus       410 ~g~~l~s~~~-----------d~-v~vwd~~~-~~~~~~~~~--~~~~~----~v~~i~~~~~-g~~l~~~~~di~vw~~  469 (504)
                      +...|..+..           ++ ..+|.... ++....+..  .....    ....++++|. ...|++++.+..||.-
T Consensus       289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S  368 (394)
T 3b7f_A          289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS  368 (394)
T ss_dssp             CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE
T ss_pred             CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            3333333321           22 45555444 333333321  11000    1245888875 3556667666667766


Q ss_pred             eccCccceeEEEccCCCCCCceeEEEEe
Q 010669          470 ASVKADWNCIKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       470 ~~~~~~~~~i~~~~~h~~~~~v~~l~~~  497 (504)
                      ....++|+.+..-     -..+.++.|.
T Consensus       369 ~D~G~tW~~~~~~-----lp~~~~v~~~  391 (394)
T 3b7f_A          369 ADEGEHWQCIASH-----LPHIYAVQSA  391 (394)
T ss_dssp             SSTTSBCEEEECS-----CSCEEEEEEE
T ss_pred             CCCCCCceEcccC-----CCCeeEEEEe
Confidence            5556778876631     2346777664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.27  E-value=1.5  Score=49.09  Aligned_cols=177  Identities=8%  Similarity=0.044  Sum_probs=102.9

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCC-CceEEEcccC----ccceeEEEEeeCCCEEEEEe-------CCCcEEEE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGH----SKKVTSVKFVTEGDLFLTGS-------ADKTVRVW  292 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h----~~~v~~l~~s~~~~~l~s~s-------~dg~i~iw  292 (504)
                      +|..=.|-.+. .|+..+ +..|+-|++.. ..+++.+..|    ...|..-..+++.++++..|       -.|.+.+|
T Consensus       107 ~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLy  184 (1630)
T 1xi4_A          107 DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY  184 (1630)
T ss_pred             CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeee
Confidence            45555555433 333333 45799999864 2444444444    34566677778888766443       35889999


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEc--cC-CCEEEEEeC---CCeEEEEECCCC---eEEE-----EeecCCCCCCCC
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVH--AT-NKYFVTASL---DNTWCFYDLSSG---ICLT-----QVSDAGTDGRPE  358 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~--p~-~~~l~s~s~---dg~i~iwd~~~~---~~~~-----~~~~~~~~~~~~  358 (504)
                      .++.    ...+.+.||.+....+...  +. ...|..+..   .+.++|.++...   ....     .+... ......
T Consensus       185 S~er----~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~-~~~~~D  259 (1630)
T 1xi4_A          185 SVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP-PEAQND  259 (1630)
T ss_pred             eccc----ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCC-cccccC
Confidence            8876    3445566776554444432  11 123333322   368888888543   1110     01100 112233


Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEc
Q 010669          359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS  408 (504)
Q Consensus       359 ~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s  408 (504)
                      -..++..++.-.++..-+.-|.|++||+.++.++..-+-...+|...+.+
T Consensus       260 fpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~  309 (1630)
T 1xi4_A          260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH  309 (1630)
T ss_pred             cceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccC
Confidence            45577788877778888899999999999998876655444445444443

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=94.25  E-value=6.2  Score=41.27  Aligned_cols=231  Identities=8%  Similarity=0.037  Sum_probs=119.7

Q ss_pred             EEE-eccCCCEEEEE-e----CCCcEEEEcCCCCceEEE-cccCcc--------ceeEEEEeeCCCEEEEE---------
Q 010669          228 SLD-IHYSKDVIATG-G----VDTNAVLFDRPSGQIVTT-LSGHSK--------KVTSVKFVTEGDLFLTG---------  283 (504)
Q Consensus       228 ~~~-~s~~~~~l~sg-~----~dg~i~vwd~~~~~~~~~-~~~h~~--------~v~~l~~s~~~~~l~s~---------  283 (504)
                      .+. ++|++++++.+ |    .-..++++|+.+++.+.. +. ...        ....++|..++.++++.         
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~  211 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS  211 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence            344 88999876654 2    223699999999876531 11 111        11445887444444432         


Q ss_pred             -eCCCcEEEEeCCCCCCcceeEEeccCCcCe-EEEEEccCCCE-----EEEEeCC---CeEEEEECCC--CeEEEEeecC
Q 010669          284 -SADKTVRVWQGSEDGNYDCKHTLKDHTAEV-QAVTVHATNKY-----FVTASLD---NTWCFYDLSS--GICLTQVSDA  351 (504)
Q Consensus       284 -s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-~~l~~~p~~~~-----l~s~s~d---g~i~iwd~~~--~~~~~~~~~~  351 (504)
                       +.-..|+.|.+-+... .-...+.+....+ .+...++++.+     +++.+.+   ..+.+.|...  +. ...+.. 
T Consensus       212 ~~~~~~v~~~~~Gt~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~-  288 (711)
T 4hvt_A          212 SLYPNSLYIWKRGESIE-KAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINM-  288 (711)
T ss_dssp             TSSBCEEEEEETTSCGG-GCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCS-
T ss_pred             CCCCCEEEEEECCCChH-HCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeec-
Confidence             1224688887765321 2222333322222 33445566652     4444322   3466666653  33 222221 


Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEE----------eCCCcEEEEEcCCCc-------eeee-eeC-CCCCeEEEEEcCCCc
Q 010669          352 GTDGRPEGYTSAAFHPDGLILGTG----------TSEALVKIWDVKSQA-------NVAK-FDG-HVGAVTAISFSENGY  412 (504)
Q Consensus       352 ~~~~~~~~v~~~~~~pdg~~l~~g----------~~dg~I~iwd~~~~~-------~~~~-~~~-~~~~i~~l~~s~~g~  412 (504)
                         ...  . .+..+.++.+++..          ...+.|...|+.++.       .... +.. ....+..+.|..+ .
T Consensus       289 ---~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~  361 (711)
T 4hvt_A          289 ---PSD--A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-R  361 (711)
T ss_dssp             ---CTT--C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-C
T ss_pred             ---CCc--c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-E
Confidence               111  1 12334456555532          246789999987642       2222 322 2346788899866 5


Q ss_pred             EEEEEeCCc---EEEEEcCCCc-ceee-eecCCCCCCeeEEEECCCCCE-EEEEeCc---EEEEEee
Q 010669          413 YLATAAHDG---VKLWDLRKLK-NFRS-FESSDSETPTNSVDFDHSGSY-LAVASAD---IRVYQVA  470 (504)
Q Consensus       413 ~l~s~~~d~---v~vwd~~~~~-~~~~-~~~~~~~~~v~~i~~~~~g~~-l~~~~~d---i~vw~~~  470 (504)
                      ++++...++   |.++|+.++. .... +.... .+.+....+++++.. +++.+..   -.+|.++
T Consensus       362 l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d  427 (711)
T 4hvt_A          362 VFLATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWV  427 (711)
T ss_dssp             EEEEEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             EEEEEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEe
Confidence            666666664   7888876664 2333 33322 245666677777654 4444433   5555553

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.87  E-value=0.13  Score=48.50  Aligned_cols=116  Identities=6%  Similarity=0.051  Sum_probs=69.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCcceeEEeccC-CcCeEEEEEc--cCCCEEEEE--eCCCeEEEEECCCCeEEEEeecCC
Q 010669          278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH-TAEVQAVTVH--ATNKYFVTA--SLDNTWCFYDLSSGICLTQVSDAG  352 (504)
Q Consensus       278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~--p~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~  352 (504)
                      ..++.++.||.|.-+|..++   +..-.+... ..++....-.  +.+..++.+  +.||.+..+|..+|.....+....
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG---~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNG---HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTT---EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CEEEEEeCCCeEEEEECCCC---cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            46888899999999998775   444444322 1222221100  112234443  689999999998886554443211


Q ss_pred             CCCCCCCeEE----EEEC----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeC
Q 010669          353 TDGRPEGYTS----AAFH----PDGLILGTGTSEALVKIWDVKSQANVAKFDG  397 (504)
Q Consensus       353 ~~~~~~~v~~----~~~~----pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~  397 (504)
                      . ....++..    +...    ..+..+++|+.+|.+...|+++|+.+..+..
T Consensus        88 l-v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           88 L-VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             H-HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             c-eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            1 00111211    0000    1456788999999999999999999988863

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=91.88  E-value=0.21  Score=36.91  Aligned_cols=44  Identities=16%  Similarity=0.144  Sum_probs=37.3

Q ss_pred             ccccCCCCCCC-ceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCC
Q 010669            2 NCSISGEVPEE-PVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~   46 (504)
                      ||.+++-+... .-+-| ++|+|+..++..|-++ ..+||.+++++.
T Consensus         3 fC~~C~~Pi~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCSEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             ecCccCCCeEEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            78999888766 56677 9999999999999865 467999999877

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=91.34  E-value=10  Score=36.16  Aligned_cols=240  Identities=11%  Similarity=0.023  Sum_probs=116.5

Q ss_pred             CEEEEEeCCCcEEEEcCCC-CceEEEc--ccCccceeEEEEee-CCCEEEEEeCCC----cEEEEeCCCCCCcceeEE--
Q 010669          236 DVIATGGVDTNAVLFDRPS-GQIVTTL--SGHSKKVTSVKFVT-EGDLFLTGSADK----TVRVWQGSEDGNYDCKHT--  305 (504)
Q Consensus       236 ~~l~sg~~dg~i~vwd~~~-~~~~~~~--~~h~~~v~~l~~s~-~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~--  305 (504)
                      ..|.+|+..| +.+++... +.....+  ......|.+|++.| +...|..++..|    .|... .+.+..+..+..  
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~  100 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPP  100 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccc
Confidence            4666777777 55555432 2222221  12235699999998 333444454444    34333 222333333221  


Q ss_pred             -ecc--------CCcCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCeEEEEeecC-C-C------------CCCCCCe
Q 010669          306 -LKD--------HTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDA-G-T------------DGRPEGY  360 (504)
Q Consensus       306 -~~~--------h~~~v~~l~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~-~------------~~~~~~v  360 (504)
                       +..        +...|.++++.|.  ...+..++..+.|...+ +.++....+... . .            ......+
T Consensus       101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i  179 (394)
T 3b7f_A          101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM  179 (394)
T ss_dssp             CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred             cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence             111        1125778999873  45666666666655543 223322222110 0 0            0112357


Q ss_pred             EEEEECC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeC-----C--------CCCeEEEEEcCC-CcEEEEEeCCcEEEE
Q 010669          361 TSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDG-----H--------VGAVTAISFSEN-GYYLATAAHDGVKLW  425 (504)
Q Consensus       361 ~~~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~~~~~~~-----~--------~~~i~~l~~s~~-g~~l~s~~~d~v~vw  425 (504)
                      .++.++| +...+.++..++.|...+ ..++....+..     +        ...+.+|.+.|+ ...|..+..++|...
T Consensus       180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s  258 (394)
T 3b7f_A          180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRM  258 (394)
T ss_dssp             EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEE
T ss_pred             eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEe
Confidence            8999998 344445554444444332 12222222210     0        124889999985 456666776666655


Q ss_pred             EcCCCcceeeeecCCCC---CCeeEEEECCC-CCEEEEEeC-----------c--EEEEEeeccCccceeEE
Q 010669          426 DLRKLKNFRSFESSDSE---TPTNSVDFDHS-GSYLAVASA-----------D--IRVYQVASVKADWNCIK  480 (504)
Q Consensus       426 d~~~~~~~~~~~~~~~~---~~v~~i~~~~~-g~~l~~~~~-----------d--i~vw~~~~~~~~~~~i~  480 (504)
                      +- .++....+......   ..+..+.++|. ...|.++..           +  ..||.-....++|+.+.
T Consensus       259 ~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~  329 (394)
T 3b7f_A          259 DR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD  329 (394)
T ss_dssp             ET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC
T ss_pred             CC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC
Confidence            42 23332222210001   34567888863 344444421           2  56777655556787765

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=89.36  E-value=0.32  Score=32.68  Aligned_cols=44  Identities=14%  Similarity=0.186  Sum_probs=34.9

Q ss_pred             ccccCCCCCCCceEeCCCCe-----eeeHHHHHHHHHhc--CCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKNSGL-----LFEKRLIERHILDY--GKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~p~~~~~~~   46 (504)
                      .|.|+.+-..+|.++| +.+     .|=+.+|.+||...  .+||+++.+..
T Consensus         8 ~CrIC~~~~~~~l~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            8 VCWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             EETTTTEECSCCCCCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             EeEEeecCCCCceecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            5888877777788888 332     78999999999974  46999998764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.13  E-value=12  Score=36.87  Aligned_cols=110  Identities=12%  Similarity=0.139  Sum_probs=62.5

Q ss_pred             cceeEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCCcceeEEec---------cCCcCeEEEEEccC----CCEEEEEeC-
Q 010669          266 KKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLK---------DHTAEVQAVTVHAT----NKYFVTASL-  330 (504)
Q Consensus       266 ~~v~~l~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~l~~~p~----~~~l~s~s~-  330 (504)
                      ...+.|+|.|++. .|+++...|.|++++.........+..+.         ........|+|+|+    +.++++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4468899999986 45566788999999754321111222221         11356889999996    443333332 


Q ss_pred             -C----------CeEEEEECCC----------CeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          331 -D----------NTWCFYDLSS----------GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       331 -d----------g~i~iwd~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                       +          ..|.-|.+..          .+.+..+...   ........+.|.|||.++++.+..
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~---~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL---HRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES---SSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC---CCcccCCcEeECCCCcEEEEeCCC
Confidence             1          1444466542          1233332211   122346889999999877765543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.78  E-value=1.1  Score=35.70  Aligned_cols=64  Identities=17%  Similarity=0.171  Sum_probs=48.6

Q ss_pred             HhhhhhhHHHHHhhhhhHHHHHHHHHHHhHhhhcccchhHHHHHHhcchhHHHHHHHHHhhhcC
Q 010669           74 GMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIM  137 (504)
Q Consensus        74 ~~~q~Ewda~~le~~~lr~~l~~~~~els~aly~~daa~rv~a~l~kErd~ar~~l~~~~~~~~  137 (504)
                      -.++.+.+.+.-+.-.+.+.+..++.||..+-.+.+.+.+-+.++.+|.++++..+.+++..+.
T Consensus        71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666666667777777788888888888888888888888888888888888876543

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=87.45  E-value=1.5  Score=32.03  Aligned_cols=57  Identities=16%  Similarity=0.181  Sum_probs=47.0

Q ss_pred             hhhhhhHHHHHhhhhhHHHHHHHHHHHhH-hhhcccchhHHHHHHhcchhHHHHHHHHHh
Q 010669           75 MFQNEWDGLMLSNFALEQQLHTARQELSH-ALYQHDAACRVIARLKKERDEARSLLAQSE  133 (504)
Q Consensus        75 ~~q~Ewda~~le~~~lr~~l~~~~~els~-aly~~daa~rv~a~l~kErd~ar~~l~~~~  133 (504)
                      -.|.||+.|=-+.-.|+.++..+..+|+. .+|+.|.+  .++.+.++.+++..+|..+.
T Consensus        19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~--~~~~l~~~l~~~e~eLe~~~   76 (89)
T 2lw1_A           19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHE--QTQKVLADMAAAEQELEQAF   76 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHH--HHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999986 67988875  46677788877777776654

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=87.02  E-value=1.4  Score=30.40  Aligned_cols=56  Identities=21%  Similarity=0.157  Sum_probs=48.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhHhhhcccchhHHHHHHhcchhHHHHHHHHHhhhcC
Q 010669           82 GLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIM  137 (504)
Q Consensus        82 a~~le~~~lr~~l~~~~~els~aly~~daa~rv~a~l~kErd~ar~~l~~~~~~~~  137 (504)
                      ++-.+|..|+.++..+.++|.++...++....-+.++..-.|-.-.+|.++...+.
T Consensus        11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La   66 (72)
T 3cve_A           11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            56678999999999999999999999999999999998888877777777765543

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=86.19  E-value=1.6  Score=30.81  Aligned_cols=56  Identities=21%  Similarity=0.185  Sum_probs=48.0

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhHhhhcccchhHHHHHHhcchhHHHHHHHHHhhhcC
Q 010669           82 GLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIM  137 (504)
Q Consensus        82 a~~le~~~lr~~l~~~~~els~aly~~daa~rv~a~l~kErd~ar~~l~~~~~~~~  137 (504)
                      ++-.+|..|+.++..+.++|.++..+++.+..-+.++..-.|-.-.+|.+++..+.
T Consensus        17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa   72 (79)
T 3cvf_A           17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA   72 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            66778999999999999999999999999999999998888877777777765543

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=85.90  E-value=38  Score=35.79  Aligned_cols=253  Identities=13%  Similarity=0.104  Sum_probs=122.7

Q ss_pred             CCeEEEEeccC-CCEEEEEeCCCcEEEEcCCCCceEEEcccC-------ccceeEEEEeeC-CCEEEEEeCCCc----EE
Q 010669          224 PGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQIVTTLSGH-------SKKVTSVKFVTE-GDLFLTGSADKT----VR  290 (504)
Q Consensus       224 ~~I~~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~s~~-~~~l~s~s~dg~----i~  290 (504)
                      ..|.+|+++|. ...+++++..|.|...+ ..|+.-..+..+       ...|.+|++.|. .+.++.+..+..    -.
T Consensus        15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           15 GYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence            47999999996 35666677667665554 345544444332       246999999873 344444433211    33


Q ss_pred             EEeC-CCCCCcceeEEe-c--c---CCcCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCCCCCCeE
Q 010669          291 VWQG-SEDGNYDCKHTL-K--D---HTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAG-TDGRPEGYT  361 (504)
Q Consensus       291 iwd~-~~~~~~~~~~~~-~--~---h~~~v~~l~~~p~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~  361 (504)
                      ||.- +.+..+..+..- .  .   ....+..++++|.. +.++.+...+.|. ...+.|+....+.... .......+.
T Consensus        94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~~  172 (789)
T 1sqj_A           94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGYT  172 (789)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCEE
T ss_pred             EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCeE
Confidence            4433 333344443210 0  0   01135667888753 4555565344332 2333344333332110 001124578


Q ss_pred             EEEECC-CCCEEEEEeCC-CcEEEEEcCCCceeeeeeC-CCC-----------------CeEEEEEcC-CCcEEEEEe--
Q 010669          362 SAAFHP-DGLILGTGTSE-ALVKIWDVKSQANVAKFDG-HVG-----------------AVTAISFSE-NGYYLATAA--  418 (504)
Q Consensus       362 ~~~~~p-dg~~l~~g~~d-g~I~iwd~~~~~~~~~~~~-~~~-----------------~i~~l~~s~-~g~~l~s~~--  418 (504)
                      .+.++| ++..++++..+ +.|.. ....++.-..+.+ ..+                 .+..+.+.| .+.++++..  
T Consensus       173 ~i~~~p~~~~~~~~~~~~~~~v~~-S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~  251 (789)
T 1sqj_A          173 SVIFDPERNGTIYASATAPQGMYV-THDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADY  251 (789)
T ss_dssp             EEEECTTSTTCEEEEESSTTCEEE-ESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESS
T ss_pred             EEEECCCCCCEEEEEEcCCCeEEE-EcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecC
Confidence            999998 44555555544 33322 2222332222111 111                 126778877 444444421  


Q ss_pred             ------CCc-EEEEEcCCCcceeeeecCCC----------CC---CeeEEEECCCC-CEEEEEeCc-------EEEEEee
Q 010669          419 ------HDG-VKLWDLRKLKNFRSFESSDS----------ET---PTNSVDFDHSG-SYLAVASAD-------IRVYQVA  470 (504)
Q Consensus       419 ------~d~-v~vwd~~~~~~~~~~~~~~~----------~~---~v~~i~~~~~g-~~l~~~~~d-------i~vw~~~  470 (504)
                            ..+ |..-+ ..++....+.....          ..   .+..++++|.. ..+++++.+       ..||.-.
T Consensus       252 ~~p~~g~~g~l~~S~-DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~~~~~~l~~S~  330 (789)
T 1sqj_A          252 PGPWGVTFGEVWRQN-RTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGPALDSIYLST  330 (789)
T ss_dssp             CSSSCCCCCCEEEEE-TTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSCSSCCCEEEES
T ss_pred             CCCCCCCCceEEEEe-CCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCCcccccEEEec
Confidence                  233 44333 22322222221100          01   34688898753 455555432       6777766


Q ss_pred             ccCccceeEE
Q 010669          471 SVKADWNCIK  480 (504)
Q Consensus       471 ~~~~~~~~i~  480 (504)
                      ...++|+.+.
T Consensus       331 DgG~tW~~~~  340 (789)
T 1sqj_A          331 DAGATWKDVT  340 (789)
T ss_dssp             STTSSEEEHH
T ss_pred             CCCCCceeCc
Confidence            6667788775

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.74  E-value=22  Score=38.66  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=33.5

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 010669          312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVS  349 (504)
Q Consensus       312 ~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  349 (504)
                      .+.++...++..++++-+.|+++++|++.+++++....
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46777888888899999999999999999999988764

>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=83.87  E-value=0.96  Score=23.33  Aligned_cols=24  Identities=38%  Similarity=0.509  Sum_probs=19.2

Q ss_pred             hhHHHHHhhhhhHHHHHHHHHHHh
Q 010669           79 EWDGLMLSNFALEQQLHTARQELS  102 (504)
Q Consensus        79 Ewda~~le~~~lr~~l~~~~~els  102 (504)
                      |.||+-.||-.|+|.+..++|..+
T Consensus         1 eidalefendaleqkiaalkqkia   24 (28)
T 3ra3_A            1 EIDALEFENDALEQKIAALKQKIA   24 (28)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHhccHHHHHHHHHHHHHHH
Confidence            568888888889888888887654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=83.44  E-value=21  Score=32.32  Aligned_cols=183  Identities=15%  Similarity=0.083  Sum_probs=88.2

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      .|..++..... .++. . ||.|+.|-......+..-..-...|..++...+  ..+.-. ||.|..|-....+...  .
T Consensus        64 ~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg--~  135 (282)
T 3qhy_B           64 GVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT--V  135 (282)
T ss_dssp             CCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS--C
T ss_pred             CEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC--C
Confidence            35555544322 2333 4 888888865432111110111235777765433  333334 8999999765433211  1


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW  384 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iw  384 (504)
                      . ......|..++.-.  .+.+.-. ||.+..|-......+....     .....|..++.-.+.. ++.  .||.|+.|
T Consensus       136 ~-~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~gqlg~p~-----~~~~~v~~i~~G~~hs-~al--~~G~v~~w  203 (282)
T 3qhy_B          136 P-AEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFGQTTVPA-----EAQSGVDDVAGGIFHS-LAL--KDGKVIAW  203 (282)
T ss_dssp             C-GGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSCCG-----GGGSSEEEEEECSSEE-EEE--ETTEEEEE
T ss_pred             C-ccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCCCCCCce-----ecCCCeEEEEecCCEE-EEE--ECCeEEEE
Confidence            1 11234577766542  2333334 7999999765422111000     1123466666554433 333  48999999


Q ss_pred             EcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC
Q 010669          385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL  430 (504)
Q Consensus       385 d~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~  430 (504)
                      =....-.+..-......|..|+-..+. .++..  ++ |+.|=....
T Consensus       204 G~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          204 GDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             ECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEEESTTCC
T ss_pred             ECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEEecCCCC
Confidence            764422211111112356777655433 33333  55 999965543

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=83.44  E-value=0.68  Score=35.65  Aligned_cols=13  Identities=62%  Similarity=1.017  Sum_probs=10.8

Q ss_pred             cCCCCCCCCCCCC
Q 010669           35 YGKCPVTGEPLTM   47 (504)
Q Consensus        35 ~~~~p~~~~~~~~   47 (504)
                      .+.||+||.+++.
T Consensus        47 g~~CPvCgs~l~~   59 (112)
T 1l8d_A           47 KGKCPVCGRELTD   59 (112)
T ss_dssp             SEECTTTCCEECH
T ss_pred             CCCCCCCCCcCCH
Confidence            4579999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	504
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-28
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-27
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-19
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-23
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-19
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-18
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-15
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	7e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	4e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  112 bits (281), Expect = 3e-28
 Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 7/164 (4%)

Query: 264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK 323
           H+  V S+    +  LF++G+ D + ++W         C+ T   H +++ A+       
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVR---EGMCRQTFTGHESDINAICFFPNGN 239

Query: 324 YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI 383
            F T S D T   +D        ++     D    G TS +F   G +L  G  +    +
Sbjct: 240 AFATGSDDATCRLFD---LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWD 426
           WD           GH   V+ +  +++G  +AT + D  +K+W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 95.6 bits (236), Expect = 3e-22
 Identities = 55/284 (19%), Positives = 90/284 (31%), Gaps = 50/284 (17%)

Query: 243 VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 302
           +  N     R   +   TL GH  K+ ++ + T+  L ++ S D  + +W        + 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY---TTNK 89

Query: 303 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT--------- 353
            H +   ++ V       +  Y     LDN    Y+L +     +VS             
Sbjct: 90  VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149

Query: 354 -------------------------------DGRPEGYTSAAFHPDGLILGTGTSEALVK 382
                                           G      S +  PD  +  +G  +A  K
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209

Query: 383 IWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS 441
           +WDV+       F GH   + AI F  NG   AT + D   +L+DLR  +   ++   + 
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269

Query: 442 ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483
                SV F  SG  L     D    V+         +      
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALK----ADRAGVLA 309

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.3 bits (225), Expect = 9e-21
 Identities = 47/327 (14%), Positives = 102/327 (31%), Gaps = 62/327 (18%)

Query: 190 QQRKKRQVPPALAPIDALERYTQ--LASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNA 247
                 Q+   + P+  ++  T+  L  H         I ++       ++ +   D   
Sbjct: 26  ADATLSQITNNIDPVGRIQMRTRRTLRGH------LAKIYAMHWGTDSRLLVSASQDGKL 79

Query: 248 VLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN-------- 299
           +++D  +   V  +   S  V +  +   G+    G  D    ++               
Sbjct: 80  IIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL 139

Query: 300 ----------------------------------YDCKHTLKDHTAEVQAVTVHATNKYF 325
                                                  T   HT +V ++++    + F
Sbjct: 140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199

Query: 326 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI-- 383
           V+ + D +   +D+  G+C          G      +  F P+G    TG+ +A  ++  
Sbjct: 200 VSGACDASAKLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDATCRLFD 254

Query: 384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE 442
                +      D  +  +T++SFS++G  L     D    +WD  K          D+ 
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN- 313

Query: 443 TPTNSVDFDHSGSYLAVASAD--IRVY 467
              + +     G  +A  S D  ++++
Sbjct: 314 -RVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (274), Expect = 2e-27
 Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 29/216 (13%)

Query: 232 HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291
             + D I +   D    +++  +G  V T +GH + V  V+   +G L  + S D+TVRV
Sbjct: 110 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169

Query: 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVH--------------------ATNKYFVTASLD 331
           W  +     +CK  L++H   V+ ++                          + ++ S D
Sbjct: 170 WVVA---TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226

Query: 332 NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN 391
            T   +D+S+G+CL  +      G         FH  G  + +   +  +++WD K++  
Sbjct: 227 KTIKMWDVSTGMCLMTLV-----GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281

Query: 392 VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWD 426
           +   + H   VT++ F +   Y+ T + D  VK+W+
Sbjct: 282 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (249), Expect = 5e-24
 Identities = 57/301 (18%), Positives = 102/301 (33%), Gaps = 79/301 (26%)

Query: 253 PSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE 312
           P       LSGH   VT V F     + ++ S D T++VW        D + TLK HT  
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE---TGDFERTLKGHTDS 61

Query: 313 VQAVT------------------------------------------VHATNKYFVTASL 330
           VQ ++                                          +     + V+AS 
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 331 DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA 390
           D T   +++ +G C+         G  E       + DG ++ + +++  V++W V ++ 
Sbjct: 122 DKTIKMWEVQTGYCVKTF-----TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 176

Query: 391 NVAKFDGHVGAVTAISF--------------------SENGYYLATAAHDG-VKLWDLRK 429
             A+   H   V  IS+                     + G +L + + D  +K+WD+  
Sbjct: 177 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236

Query: 430 LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG 487
                +    D+      V F   G ++   + D  +RV+   +      C+KT      
Sbjct: 237 GMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKN----KRCMKTLNAHEH 290

Query: 488 T 488
            
Sbjct: 291 F 291

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.1 bits (214), Expect = 1e-19
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 215 SHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV 274
           S     +   G  +         + +G  D    ++D  +G  + TL GH   V  V F 
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 275 TEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTW 334
           + G   L+ + DKT+RVW      N  C  TL  H   V ++  H T  Y VT S+D T 
Sbjct: 257 SGGKFILSCADDKTLRVWDYK---NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 313

Query: 335 CFYD 338
             ++
Sbjct: 314 KVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.1 bits (245), Expect = 3e-23
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 18/176 (10%)

Query: 273 FVTEGDLFLTGSADKTVRVWQGSEDGNYDC----KHTLKDHTAEVQAVTVHATNKYFVTA 328
              +G     GS D+ VRVW        +       +   H   V +V      +  V+ 
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 329 SLDNTWCFYDLSSGICLTQVSDAGTD-------GRPEGYTSAAFHPDGLILGTGTSEALV 381
           SLD +   ++L +    +      +        G  +   S A   +   + +G+ +  V
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332

Query: 382 KIWDVKSQANVAKFDGHVGAVTAI------SFSENGYYLATAAHDG-VKLWDLRKL 430
             WD KS   +    GH  +V ++      S        AT + D   ++W  +K+
Sbjct: 333 LFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.2 bits (209), Expect = 1e-18
 Identities = 60/352 (17%), Positives = 112/352 (31%), Gaps = 82/352 (23%)

Query: 207 LERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS---G 263
           L  Y Q A+H   K   P ++ LD     D +     D   +       +I   L     
Sbjct: 3   LVPYNQRANH--SKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLD 60

Query: 264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQ---------------GSEDGNYDCKHTLKD 308
           H+  V  VKF  +G+   TG  +KT +V++                ++D       +   
Sbjct: 61  HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119

Query: 309 HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP----------- 357
               +++V      K+  T + D     +D+ +   +  +     D              
Sbjct: 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179

Query: 358 --------------------------EGYTSAAFHPDGLILGTGTSEALVKIWDVKS--- 388
                                        T A    DG  +  G+ +  V++WD ++   
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239

Query: 389 ----QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET 443
                +      GH  +V ++ F+ +G  + + + D  VKLW+L+   N    ++ +S T
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299

Query: 444 PT----------NSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 483
                        SV    +  Y+   S D  +  +   S     N +    
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS----GNPLLMLQ 347

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT--- 275
           +   K  ++S+    + + I +G  D   + +D+ SG  +  L GH   V SV       
Sbjct: 304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS 363

Query: 276 ---EGDLFLTGSADKTVRVWQ 293
              E ++F TGS D   R+W+
Sbjct: 364 LGPEYNVFATGSGDCKARIWK 384

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (209), Expect = 8e-19
 Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 21/206 (10%)

Query: 232 HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291
            Y    + +G  D    ++D  +   + TL GH+ +V S++F  +G   ++GS D ++RV
Sbjct: 144 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRV 201

Query: 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 351
           W        +C HTL  H +    + +   +   V+ + D+T   +D+ +G CL  +   
Sbjct: 202 WDVE---TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGP 256

Query: 352 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-----DGHVGAVTAIS 406
                        F+ + +I  T + +  VK+WD+K+   +         G  G V  I 
Sbjct: 257 NKHQSAVTCLQ--FNKNFVI--TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 312

Query: 407 FSENGYYLATAAHDG-----VKLWDL 427
            S      A  + +G     + + D 
Sbjct: 313 ASNTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (203), Expect = 6e-18
 Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 8/174 (4%)

Query: 216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT 275
             LH           + +    + +G +DT+  ++D  +G  + TL+GH    + ++   
Sbjct: 168 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-- 225

Query: 276 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335
           + ++ ++G+AD TV++W                H + V  +  +    + +T+S D T  
Sbjct: 226 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVK 283

Query: 336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT----GTSEALVKIWD 385
            +DL +G  +  +    + G              L+       GT E  + + D
Sbjct: 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 3e-16
 Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 23/239 (9%)

Query: 232 HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291
           H  +  + +G  D    ++D  +GQ +  L GH   V       +G   ++G+ D  V+V
Sbjct: 104 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKV 161

Query: 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 351
           W         C HTL+ HT  V   ++     + V+ SLD +   +D+ +G C+  ++  
Sbjct: 162 WDPE---TETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG- 215

Query: 352 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF---DGHVGAVTAISFS 408
                     ++       IL +G +++ VKIWD+K+   +      + H  AVT + F+
Sbjct: 216 ------HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 269

Query: 409 ENGYYLATAAHDG-VKLWDLRK---LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 463
           +N  ++ T++ DG VKLWDL+    ++N  + ES  S      +   ++    AV S +
Sbjct: 270 KN--FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (185), Expect = 1e-15
 Identities = 39/262 (14%), Positives = 85/262 (32%), Gaps = 44/262 (16%)

Query: 251 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 310
            R   +    L GH   V +      G+  ++GS D T++VW         C  TL  HT
Sbjct: 2   RRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAV---TGKCLRTLVGHT 57

Query: 311 AEVQAVTVHATNKYFVTASLDNTWCF-------------------------------YDL 339
             V +  +        +                                         D 
Sbjct: 58  GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

Query: 340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV 399
           +  +   +                    DG  + +G  + +VK+WD +++  +    GH 
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177

Query: 400 GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 458
             V ++ F  +G ++ + + D  +++WD+       +     S   T+ ++     + L 
Sbjct: 178 NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--KDNILV 231

Query: 459 VASAD--IRVYQVASVKADWNC 478
             +AD  ++++ + + +     
Sbjct: 232 SGNADSTVKIWDIKTGQCLQTL 253

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 2e-15
 Identities = 49/300 (16%), Positives = 107/300 (35%), Gaps = 60/300 (20%)

Query: 231 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKF----------------- 273
           + +  + I +G  D    ++   +G+ + TL GH+  V S +                  
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82

Query: 274 ---------------------VTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE 312
                                       ++GS D T+RVW         C H L  H A 
Sbjct: 83  NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE---TGQCLHVLMGHVAA 139

Query: 313 VQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 372
           V+   V    +  V+ + D     +D  +  CL  +               +   DG+ +
Sbjct: 140 VR--CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG-------HTNRVYSLQFDGIHV 190

Query: 373 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK 431
            +G+ +  +++WDV++   +    GH    + +   +N   L +   D  VK+WD++  +
Sbjct: 191 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQ 248

Query: 432 NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTG 489
             ++ +  +    +       + +++  +S D  ++++ + +       I+    L   G
Sbjct: 249 CLQTLQGPNKHQ-SAVTCLQFNKNFVITSSDDGTVKLWDLKT----GEFIRNLVTLESGG 303

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 4/71 (5%)

Query: 384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE 442
           W      +     GH   V        G  + + + D  +K+W     K  R+       
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG- 58

Query: 443 TPTNSVDFDHS 453
               S     +
Sbjct: 59  -GVWSSQMRDN 68

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (189), Expect = 2e-16
 Identities = 48/297 (16%), Positives = 103/297 (34%), Gaps = 63/297 (21%)

Query: 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD 278
              +  G+  L   Y    I +G  D    ++D+ + +    L+GH+  V  +++     
Sbjct: 11  RSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 279 LFLTGS--------------------------------------ADKTVRVWQGSEDGNY 300
           +  +                                         D+++ VW  +   + 
Sbjct: 69  ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128

Query: 301 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 360
             +  L  H A V  V     +KY V+AS D T   ++ S+   +  ++           
Sbjct: 129 TLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNG-------HKR 179

Query: 361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 420
             A       ++ +G+S+  +++WD++  A +   +GH           +   + + A+D
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRFDNKRIVSGAYD 237

Query: 421 G-VKLWDLRKLKNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASAD--IRVY 467
           G +K+WDL    + R+   +               + FD     +  +S D  I ++
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 3e-13
 Identities = 40/278 (14%), Positives = 85/278 (30%), Gaps = 53/278 (19%)

Query: 252 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 311
           R S Q +   S  SK V  +++  +    ++G  D T+++W  +     +CK  L  HT 
Sbjct: 2   RHSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN---TLECKRILTGHTG 56

Query: 312 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ------------------------ 347
            V  +          ++         +    +                            
Sbjct: 57  SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116

Query: 348 --VSDAGTDGRPEGYTSAAFH--------PDGLILGTGTSEALVKIWDVKSQANVAKFDG 397
             V D  +            H         D   + + + +  +K+W+  +   V   +G
Sbjct: 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 176

Query: 398 HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 456
           H   +  + +      + + + D  ++LWD+      R  E                   
Sbjct: 177 HKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG----HEELVRCIRFDNKR 230

Query: 457 LAVASAD--IRVYQVAS-----VKADWNCIKTFPDLSG 487
           +   + D  I+V+ + +       A   C++T  + SG
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 268

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 4e-12
 Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 24/153 (15%)

Query: 284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI 343
           S D+T++VW  S     +   TL  H   +  +     ++  V+ S DNT   +D+  G 
Sbjct: 155 SGDRTIKVWNTS---TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA 209

Query: 344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN---------VAK 394
           CL  +                   D   + +G  +  +K+WD+ +  +         +  
Sbjct: 210 CLRVLEG-------HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT 262

Query: 395 FDGHVGAVTAISFSENGYYLATAAHDG-VKLWD 426
              H G V  + F  + + + +++HD  + +WD
Sbjct: 263 LVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 1e-09
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 9/156 (5%)

Query: 232 HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291
            +    I +   D    +++  + + V TL+GH + +  +++     L ++GS+D T+R+
Sbjct: 145 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRL 202

Query: 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 351
           W                   E     +   NK  V+ + D     +DL + +     +  
Sbjct: 203 WDIE-----CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 257

Query: 352 GTDGRPEGYTSA--AFHPDGLILGTGTSEALVKIWD 385
                   ++        D   + + + +  + IWD
Sbjct: 258 LCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---------QIVTTLSGHSK 266
             L        +   I +    I +G  D    ++D  +            + TL  HS 
Sbjct: 209 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 268

Query: 267 KVTSVKFVTEGDLFLTGSADKTVRVW 292
           +V  ++F  +    ++ S D T+ +W
Sbjct: 269 RVFRLQF--DEFQIVSSSHDDTILIW 292

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 76.1 bits (185), Expect = 1e-15
 Identities = 13/174 (7%), Positives = 37/174 (21%), Gaps = 11/174 (6%)

Query: 263 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK----HTLKDHTAEVQAVTV 318
             +    +  F  +       S                         +           +
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235

Query: 319 HATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 376
              +          ++ +      +            +     Y+               
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295

Query: 377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK 429
            + ++  +DVK++    K       +T +  S +   +     DG +  + L K
Sbjct: 296 EKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 24/228 (10%), Positives = 49/228 (21%), Gaps = 26/228 (11%)

Query: 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT 317
           +T  +                    G   + + V+    D             +   A  
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY----DMEGRKIFAATTENSHDYAPA 185

Query: 318 VHATNKYFVTASLDNTWCFYDLSSGICLTQVS--DAGTDGRPEGYTSAAFHPDGLILGTG 375
             A +K     S  +     D        +V          P         P  +    G
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

Query: 376 TSEALVKIW-------DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL 427
             +             D      +   +  +   +     E   Y   A   G +  +D+
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305

Query: 428 --RKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS 471
             RK+   ++            +        + V   D  I  + +  
Sbjct: 306 KTRKVTEVKN--------NLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 4/84 (4%), Positives = 18/84 (21%), Gaps = 7/84 (8%)

Query: 209 RYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKV 268
            Y  +                                  + +D  + +    ++     +
Sbjct: 265 DYRMIIPLESSILI---YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNL 317

Query: 269 TSVKFVTEGDLFLTGSADKTVRVW 292
           T ++   +    +    D  +  +
Sbjct: 318 TDLRLSADRKTVMVRKDDGKIYTF 341

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.6 bits (176), Expect = 2e-14
 Identities = 38/233 (16%), Positives = 75/233 (32%), Gaps = 37/233 (15%)

Query: 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ---GSEDGNYDCKHTLKDHTAEVQ 314
           V +    S+  TSV     G L  TG  + TV++ +        N++ +H++ +++  ++
Sbjct: 177 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235

Query: 315 AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE-----------GYTSA 363
           +V           A   N++    L       ++                        S 
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295

Query: 364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAV----TAISFSENGYYLATAAH 419
           +F+  G  L +   +  ++ WDVK++  +   + H   +      ++  E+G  LA    
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 355

Query: 420 DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 470
             VK                       S         L     D  IR ++ A
Sbjct: 356 FDVKFLK----------------KGWRSGMGADLNESLCCVCLDRSIRWFREA 392

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.0 bits (164), Expect = 6e-13
 Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 41/202 (20%)

Query: 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW---QGSEDGNYDCKHTLKDHTAEVQ 314
                 H   + SV         ++ S D  ++VW       +   D  ++   H + + 
Sbjct: 7   ANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 315 AVTV-------HATNKYFVTASLDNTWCFYDLSSGICLTQVSDA-----GTDGRPEGYTS 362
            V V               T S      FY ++      +V         +D +   + +
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 363 AAFHPDGL-----ILGTGTSEALVKIWDVKS------------------QANVAKFDGHV 399
             +           L     +    IW                      Q  V       
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 400 GAVTAISFSENGYYLATAAHDG 421
              T++  SE G  +AT  ++G
Sbjct: 185 QFATSVDISERG-LIATGFNNG 205

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 9e-10
 Identities = 24/217 (11%), Positives = 52/217 (23%), Gaps = 43/217 (19%)

Query: 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL--------TQVSDAGT 353
             +  K H A++ +V+    N + V+ S D     +D                 V  +G 
Sbjct: 6   TANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 354 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF----------DGHVGAVT 403
                         +  ++ T +    +  + +  +    K           D    +  
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 404 AISFSENGY-----YLATAAHDG-VKLWDLRKLKNFRSFESSDSE--------------- 442
           A+ +  +        L      G   +W      +  +  + +                 
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183

Query: 443 -TPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNC 478
                SVD    G  +A    +  V            
Sbjct: 184 SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY 219

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 9e-05
 Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 22/117 (18%)

Query: 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKV----TSVKFVTEGDLF 280
            ++SL  + S + + + G D     +D  + + +TTL+ H   +      +     GD  
Sbjct: 291 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350

Query: 281 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY 337
                     + +G                   ++      N+      LD +  ++
Sbjct: 351 AEPGVFDVKFLKKG------------------WRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 19/119 (15%), Positives = 31/119 (26%), Gaps = 15/119 (12%)

Query: 251 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 310
              S Q       HS  V S+ F   G+   +   D  +R W        +   TL  H 
Sbjct: 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK---TKERITTLNMHC 331

Query: 311 AEVQ----AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF 365
            +++     + V           +   +    L  G      +D       E       
Sbjct: 332 DDIEIEEDILAVDEHGDSLAEPGV---FDVKFLKKGWRSGMGADLN-----ESLCCVCL 382

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.9 bits (169), Expect = 1e-13
 Identities = 45/297 (15%), Positives = 84/297 (28%), Gaps = 26/297 (8%)

Query: 219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVTE 276
           H      I     +  +  IA    +    ++++   +   V  L  H+ +VT V +  +
Sbjct: 3   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 277 GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF 336
            +  +T   D+   VW   +   +     +       + V      K F   S       
Sbjct: 63  SNRIVTCGTDRNAYVWT-LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

Query: 337 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK-- 394
                      V             S  +HP+ ++L  G+ +   +I+    +    +  
Sbjct: 122 CYFEQ-ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180

Query: 395 ----------------FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 437
                                G V  + FS NG  +A  +HD  V L D  K     +  
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240

Query: 438 SSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASF 493
           S     P  +V F    S +A        ++   S     +          +     
Sbjct: 241 SETL--PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 295

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 35/179 (19%), Positives = 51/179 (28%), Gaps = 17/179 (9%)

Query: 260 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 319
             S     V  V F   G      S D TV +             TL   T  + AVT  
Sbjct: 196 ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD---KKMAVATLASETLPLLAVTFI 252

Query: 320 ATNKYFVTASLDNTWCF-YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378
             +             F YD ++G      S  G    P+  +                 
Sbjct: 253 TESSLVAAGHDCFPVLFTYDSAAGKL----SFGGRLDVPKQSSQRGLTARERFQNLDKKA 308

Query: 379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENG----YYLATAAHDG-VKLWDLRKLKN 432
                 +  + A       H  +V+ IS    G        T   DG + +WD+R L++
Sbjct: 309 ----SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 19/109 (17%), Positives = 29/109 (26%), Gaps = 8/109 (7%)

Query: 238 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 297
           +   G D   VLF   S     +  G                    + DK       +  
Sbjct: 257 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 316

Query: 298 GNYDCKHTLKDHTAEVQAVTVHATNKY----FVTASLDNTWCFYDLSSG 342
           G          H   V  ++V +  K     F T  +D     +D+ S 
Sbjct: 317 G----AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 2e-13
 Identities = 32/305 (10%), Positives = 77/305 (25%), Gaps = 70/305 (22%)

Query: 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL---SGHSKKVTSVKFV-TEGDLF 280
            I  + I  SK ++     D +  ++          L     +   +    F+       
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 281 LTGSADKTVRVWQGSEDGNYDCK------------------------------------- 303
             G+    +         ++                                        
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 304 ---------HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 354
                        +   + +  T+   +   +    ++   ++ L         +   + 
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD-NGTIEESG 191

Query: 355 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV---------------AKFDGHV 399
            + +    A    +       + +  V +     Q +                 K     
Sbjct: 192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA 251

Query: 400 GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 458
             V +I FS    +L TA  DG +  W+L+  K  ++F   +     + V    S + L 
Sbjct: 252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSVVKIACSDNILC 308

Query: 459 VASAD 463
           +A++D
Sbjct: 309 LATSD 313

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 4e-12
 Identities = 9/82 (10%), Positives = 20/82 (24%)

Query: 256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQA 315
           QIV         ++ +K +    L L  S D ++ V++               +   +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 316 VTVHATNKYFVTASLDNTWCFY 337
                     +           
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILK 83

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 3e-10
 Identities = 17/162 (10%), Positives = 43/162 (26%), Gaps = 13/162 (8%)

Query: 277 GDLFLTGSADKTVRVWQ-GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 335
               + G  +  V+ ++    + +                  +    + +  +S+D    
Sbjct: 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219

Query: 336 FYDLSSGICLTQVSD----------AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD 385
                        S                      S  F P    L T  S+ ++  W+
Sbjct: 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279

Query: 386 VKSQANVAKFDGHVGAVTAISFSENGYYLATA-AHDGVKLWD 426
           ++++  +  F       + +  + +   L  A + D  K   
Sbjct: 280 LQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 6e-10
 Identities = 21/150 (14%), Positives = 41/150 (27%), Gaps = 22/150 (14%)

Query: 273 FVTEGDLFLTGSADKTVRVW------------QGSEDGNYDCKHTLKDHTAEVQAVTVHA 320
              E + +   S D  V V             +      +       +    V ++    
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261

Query: 321 TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 380
            +K+  TA  D     ++L +   +   +    D      +         IL   TS+  
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED------SVVKIACSDNILCLATSDDT 315

Query: 381 VKIWDVKSQANVAKFDGHVGAVTAISFSEN 410
            K      Q      + +  ++  I   EN
Sbjct: 316 FKTNAAIDQ----TIELNASSIYIIFDYEN 341

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 8/89 (8%), Positives = 19/89 (21%), Gaps = 2/89 (2%)

Query: 392 VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET-PTNSVD 449
           V         ++ I    +   L   + DG + ++             S     P    +
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 450 FDHSGSYLAVASADIRVYQVASVKADWNC 478
           F  +                  +    + 
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSF 92

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 9/89 (10%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 228 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 287
           S++       + T G D     ++  + + +   +  ++  + VK     ++    ++D 
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDD 314

Query: 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAV 316
           T +              T++ + + +  +
Sbjct: 315 TFKTNA-------AIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 4/98 (4%)

Query: 236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 295
                G    ++  F     ++    +  +  V S++F        T  +D  +  W   
Sbjct: 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281

Query: 296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT 333
                           E   V +  ++     A+ D+T
Sbjct: 282 ---TRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDT 315

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 7/83 (8%), Positives = 20/83 (24%), Gaps = 16/83 (19%)

Query: 287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT 346
           + V++ Q  +D               +  + +  +    +  S D +   Y         
Sbjct: 2   QIVQIEQAPKDY--------------ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV 47

Query: 347 QVSDAGTDGRPEGYTSAAFHPDG 369
            +    +           F  + 
Sbjct: 48  DL--LQSLRYKHPLLCCNFIDNT 68

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 6e-13
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 8/137 (5%)

Query: 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 351
              S D     +    D T+++ ++    T ++       +            + +    
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL------HVNKPDKY 259

Query: 352 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG 411
                     S  F   G    +   + L+  W     A++ +      +V +   S + 
Sbjct: 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD 318

Query: 412 YYLATAAHDG-VKLWDL 427
            Y+ T + D    ++++
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 5e-12
 Identities = 40/287 (13%), Positives = 75/287 (26%), Gaps = 48/287 (16%)

Query: 226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-----GHSKKVTSVKFVTEGDLF 280
           + ++ I      + TGG      ++D       + +S          + S K + +G   
Sbjct: 54  VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL 112

Query: 281 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS 340
           + G    T+ +W  +               A         +   F   S  N   +   +
Sbjct: 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN 172

Query: 341 SGICLTQVSDA------------------GTDGRPEGY-----------------TSAAF 365
             +                          G D     +                  S  +
Sbjct: 173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGY 232

Query: 366 HPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL 424
            P G  L  G   + V++  V       +   H   V ++ F+  G +  +   D  +  
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291

Query: 425 WDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469
           W      +    + S       S D      Y+   S D    VY+V
Sbjct: 292 WRTPYGASIFQSKESS---SVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 19/130 (14%), Positives = 34/130 (26%), Gaps = 5/130 (3%)

Query: 354 DGRPEGYTSAAFH--PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG 411
            G      + +FH   DG +         +    +   A       H   V A++ S   
Sbjct: 4   QGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPT 63

Query: 412 YYLATAAHDGVKLWDLRK---LKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQ 468
            ++ T     VK+WD+            +  + +    S      G  L V      +  
Sbjct: 64  RHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123

Query: 469 VASVKADWNC 478
                     
Sbjct: 124 WDLAAPTPRI 133

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 6/115 (5%)

Query: 264 HSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN 322
            SK   S     +G +       D  +         +    +TL +H   V AVT+    
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR---HARQINTL-NHGEVVCAVTISNPT 63

Query: 323 KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377
           ++  T         +D+S     + VS      R     S    PDG  L  G  
Sbjct: 64  RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (161), Expect = 1e-12
 Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 8/140 (5%)

Query: 259 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTV 318
           TTL GH   V +     E +  +TG+ DK +RV+      N      L  H   V A+  
Sbjct: 6   TTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSI---NKKFLLQLSGHDGGVWALKY 61

Query: 319 HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 378
                  V+ S D T   +D+  G C        +  R             +    G+ +
Sbjct: 62  A-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT---GSRD 117

Query: 379 ALVKIWDVKSQANVAKFDGH 398
             + +W +  +++V      
Sbjct: 118 NTLHVWKLPKESSVPDHGEE 137

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.7 bits (145), Expect = 1e-10
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 231 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 290
           + +  + + TG  D    ++D  + + +  LSGH   V ++K+   G + ++GS D+TVR
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVR 77

Query: 291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 350
           VW   + G         + T     +  +   KY VT S DNT   + L     +    +
Sbjct: 78  VWD-IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE 136

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (139), Expect = 7e-10
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 13/197 (6%)

Query: 232 HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 291
               +++ +G  D   +++D    + +  LSGH+ ++ S  +  E    ++ S D T+R+
Sbjct: 168 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 227

Query: 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 351
           W                    ++       +     +        Y        T +   
Sbjct: 228 WDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL--- 284

Query: 352 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV-AKFDGHVGAVTAISFSEN 410
                        F+    IL +G SE    I++++S   V A        + +++F   
Sbjct: 285 --------SAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 335

Query: 411 GYYLATAAHDGVKLWDL 427
               A        L  L
Sbjct: 336 TLVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 21/119 (17%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 358 EGYTSA---AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL 414
            G+ ++       +   + TG  + +++++D  ++  + +  GH G V A+ ++  G  +
Sbjct: 9   RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68

Query: 415 ATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS 471
           + +    V++WD++K      FE  +S      +    +  Y+   S D  + V+++  
Sbjct: 69  SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 5e-07
 Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-TTLSGHSKKVTSVKFV 274
                     + ++   Y  D I   G +    +++  SG++V   +   + ++ SV F 
Sbjct: 274 SRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK 333

Query: 275 TEGDLFLTGSADKTVRVW 292
            +  L      D    + 
Sbjct: 334 GKT-LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 393 AKFDGHVGAV-TAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 450
               GH+ +V T + F +N  Y+ T A D  ++++D    K        D      ++ +
Sbjct: 6   TTLRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDG--GVWALKY 61

Query: 451 DHSGSYLAVASADIRVYQVASVKADWNC 478
            H G  L   S D  V      K     
Sbjct: 62  AH-GGILVSGSTDRTVRVWDIKKGCCTH 88

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 9e-06
 Identities = 37/238 (15%), Positives = 78/238 (32%), Gaps = 13/238 (5%)

Query: 230 DIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTV 289
            +     V   G      ++F  P               +       G++ ++GS D T+
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183

Query: 290 RVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVS 349
            VW  +      C + L  HT  + +       K  ++AS+D T   +DL +G  +    
Sbjct: 184 IVWDVA---QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT-- 238

Query: 350 DAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE 409
                             D  ++      ++            +    ++ A+T   F  
Sbjct: 239 ----LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT--FYV 292

Query: 410 NGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVY 467
           +   L + + +   +++LR  K   +    D++    SV+F      +A    D + +
Sbjct: 293 SDNILVSGSENQFNIYNLRSGKLVHANILKDAD-QIWSVNFKGKT-LVAAVEKDGQSF 348

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.5 bits (152), Expect = 1e-11
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 255 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD-HTAEV 313
           G I     GH+K +T++    +G    +  A+  +  W  S            D H   +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS---TGISNRVFPDVHATMI 58

Query: 314 QAVTVHATNKYFVTASLDNTWCFYDLSSGI 343
             +   +    F  +  D+        SG+
Sbjct: 59  TGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.7 bits (124), Expect = 4e-08
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAH 419
           T+ +   DG  L +  +E  +  WD+ +  +   F D H   +T I  +  G     +  
Sbjct: 16  TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWD 75

Query: 420 DGVKLWDLRK 429
           D +K+     
Sbjct: 76  DHLKVVPAGG 85

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.5 bits (121), Expect = 8e-08
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 397 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 452
           GH  A+TA+S S +G  L +A  +G +  WD+    + R F    +      +    
Sbjct: 10  GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT-MITGIKTTS 65

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.1 bits (120), Expect = 1e-07
 Identities = 38/285 (13%), Positives = 82/285 (28%), Gaps = 41/285 (14%)

Query: 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTG 283
            I +L        + +   + +   +D  +G         H+  +T +K  ++GDLF   
Sbjct: 14  AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73

Query: 284 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-------------- 329
             D  ++V      G    K      +++   + V A     V A               
Sbjct: 74  W-DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE 132

Query: 330 ----------------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 367
                                   ++       SG  +++V              +    
Sbjct: 133 VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA 192

Query: 368 DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWD 426
             +            + +    A+   +  H   V  +S+S +   LAT + D  V +W+
Sbjct: 193 FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 252

Query: 427 LRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469
           + K  +            + +     + + +  A  D  I+ + V
Sbjct: 253 MNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.8 bits (114), Expect = 6e-07
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 4/88 (4%)

Query: 302 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 361
                  H   + A++  A  K   +A  +     +D+S+GI      D          T
Sbjct: 4   IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT----MIT 59

Query: 362 SAAFHPDGLILGTGTSEALVKIWDVKSQ 389
                  G +      + L  +    S 
Sbjct: 60  GIKTTSKGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.4 bits (105), Expect = 7e-06
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 280 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL 339
             TGS D +V VW      +         H        +       V+A  D+   F+++
Sbjct: 239 LATGSLDNSVIVWN-MNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

Query: 340 S 340
            
Sbjct: 298 P 298

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.8 bits (148), Expect = 3e-11
 Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 14/288 (4%)

Query: 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE 276
            L +T++   V L    + D I      T+       S       + HS + T  K    
Sbjct: 11  SLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS 69

Query: 277 GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF 336
           G    +G     VR+W  +    +  K T+   +  V+ ++  + +K       +    F
Sbjct: 70  GYYCASGDVHGNVRIWD-TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG-EGRERF 127

Query: 337 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD 396
             +      T   +     R              I+       +        +      +
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187

Query: 397 GHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSET-----PTNSVDFD 451
                 +     +   + +T     + L++         FE    +          + + 
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247

Query: 452 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF 497
             G+ +A ASAD  I+++ VA+        KT P  +         ++
Sbjct: 248 PDGTKIASASADKTIKIWNVAT----LKVEKTIPVGTRIEDQQLGIIW 291

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.4 bits (126), Expect = 2e-08
 Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 4/140 (2%)

Query: 292 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG--ICLTQVS 349
               E   +  K T  +HT  V +V  +     F +   D T   Y+   G    + +  
Sbjct: 171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 230

Query: 350 DAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG-AVTAISFS 408
                          + PDG  + + +++  +KIW+V +                 +   
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290

Query: 409 ENGYYLATAAHDG-VKLWDL 427
                L + + +G +   + 
Sbjct: 291 WTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.7 bits (119), Expect = 2e-07
 Identities = 6/64 (9%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 230 DIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLFLTGSADKT 288
                   IA+   D    +++  + ++  T+   ++ +   +  +      ++ SA+  
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 289 VRVW 292
           +   
Sbjct: 305 INFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 410 NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRV 466
           +G  +A+A+ D  +K+W++  LK  ++     +      +    +   L   SA+  I  
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVG-TRIEDQQLGIIWTKQALVSISANGFINF 307

Query: 467 Y 467
            
Sbjct: 308 V 308

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.5 bits (133), Expect = 7e-11
 Identities = 26/55 (47%), Positives = 39/55 (70%)

Query: 1  MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKT 55
          M C+ISG+VP  PV+S  S  +FEK L+E+++ D G  P+T EPL++++IV I  
Sbjct: 1  MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 55

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 8e-10
 Identities = 44/315 (13%), Positives = 82/315 (26%), Gaps = 62/315 (19%)

Query: 217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAV-LFDRPSGQI--VTTLSGH-SKKVTSVK 272
           P   T +     L    + + IA     +  V   D    ++  V   +GH S  VT+VK
Sbjct: 11  PQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVK 70

Query: 273 F--VTEGDLFLTGSADKTVRVWQGSEDGNYD-----CKHTLKDHTAEVQAVTVHATNKYF 325
           F  +       +G     V VW  + D   +      K   +     +  ++     +  
Sbjct: 71  FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130

Query: 326 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI-LGTGTSEALVKIW 384
                        +S     +    +G   R          P   + +G   S    +  
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190

Query: 385 DVKSQANVAKFDGHVGAVTAISFSENGYY------------------------------- 413
             K  A+          V  + FS +                                  
Sbjct: 191 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 250

Query: 414 ---------------LATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG-SY 456
                           AT   D  +++WD+   K  + +     +     V    +G   
Sbjct: 251 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 310

Query: 457 LAVASAD--IRVYQV 469
           +   S D  +  Y++
Sbjct: 311 IISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 3e-05
 Identities = 11/84 (13%), Positives = 21/84 (25%), Gaps = 5/84 (5%)

Query: 400 GAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSET-PTNSVDF--DHSG 454
              T +S+      +A        V+  D    K     + +   +    +V F      
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 455 SYLAVASADIRVYQVASVKADWNC 478
            YL       +V          + 
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESN 101

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 2e-09
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 12/84 (14%)

Query: 254 SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 313
             +++ T+SGH+K +T++      +  ++GS D  +  W              +DH+  +
Sbjct: 2   HDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEW--------SSSSMHQDHSNLI 49

Query: 314 QAVTVHATNKYFVTASLDNTWCFY 337
            ++      +Y   +  D      
Sbjct: 50  VSLDNSKAQEYSSISWDDTLKVNG 73

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (131), Expect = 5e-09
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 216 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFD-RPSGQIVTTLSGHSKKVTSVKFV 274
                       + +    +D++ATG +DTN  ++  +   +I+  L+ H   V ++ + 
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267

Query: 275 TEGDLFLTGSADKTVRVW 292
           T     ++  AD  ++ W
Sbjct: 268 TPS-TLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.0 bits (130), Expect = 6e-09
 Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATA 417
              +     +  ++ TG+ +  + I+ VK    + K  + H   V  + +      L ++
Sbjct: 217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSS 275

Query: 418 AHDG-VKLWD 426
             D  +K W+
Sbjct: 276 GADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 5/99 (5%)

Query: 288 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 347
           +  V            + +    AE  A           T SLD     Y +   + + +
Sbjct: 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252

Query: 348 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDV 386
             +A  D    G  +  +     ++ +  ++A +K W+V
Sbjct: 253 ALNAHKD----GVNNLLWETPSTLV-SSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 4e-06
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 269 TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA 328
            + +   E DL  TGS D  + ++             L  H   V  +     +   V++
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMK--IIKALNAHKDGVNNLLWETPST-LVSS 275

Query: 329 SLDNTWCFYD 338
             D     ++
Sbjct: 276 GADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 12/88 (13%)

Query: 392 VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 450
           +    GH   +TA++ +     L + ++DG +  W    +         D      S+D 
Sbjct: 6   LKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQ-------DHSNLIVSLDN 54

Query: 451 DHSGSYLAVASADIRVYQVASVKADWNC 478
             +  Y +++  D       +     + 
Sbjct: 55  SKAQEYSSISWDDTLKVNGITKHEFGSQ 82

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (90), Expect = 6e-04
 Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 14/74 (18%)

Query: 298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 357
           G+ +   T+  H   + A+TV+      ++ S D     +  SS                
Sbjct: 1   GHDEVLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQ----------DHS 46

Query: 358 EGYTSAAFHPDGLI 371
               S         
Sbjct: 47  NLIVSLDNSKAQEY 60

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 9/53 (16%)

Query: 361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYY 413
           T+   +P    L +G+ +  +  W   S         H   + ++  S+   Y
Sbjct: 17  TALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQEY 60

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 32/284 (11%), Positives = 84/284 (29%), Gaps = 51/284 (17%)

Query: 225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS 284
           GI +L ++     + +G  D   + +        +    HS  + S+   ++   + + S
Sbjct: 15  GITALTVNP----LISGSYDGRIMEWS-----SSSMHQDHSNLIVSLDN-SKAQEYSSIS 64

Query: 285 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT-------------------------VH 319
            D T++V   ++            +     AV                            
Sbjct: 65  WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 124

Query: 320 ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 379
           A +      ++            +   +VS           +  +  P    +  G    
Sbjct: 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 184

Query: 380 LVKIWDVKS-----------QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL 427
            + ++D++S            + +           A         +AT + D  + ++ +
Sbjct: 185 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 244

Query: 428 RKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469
           ++        ++  +   N++ +  + S L  + AD  I+ + V
Sbjct: 245 KRPMKIIKALNAHKD-GVNNLLW-ETPSTLVSSGADACIKRWNV 286

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 14/169 (8%), Positives = 37/169 (21%), Gaps = 17/169 (10%)

Query: 259 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTV 318
                    +    +  +    +  +    +        G+      ++  T   +A   
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID-LSSGDAKFLPAVEALTEAERADGW 246

Query: 319 HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT-------DGRPEGY-------TSAA 364
                  V         +  +         + +          G             S  
Sbjct: 247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSIN 306

Query: 365 FHPDG--LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG 411
              D   L+    T +  + I D +S   +   +        I+ ++ G
Sbjct: 307 VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 31/324 (9%), Positives = 78/324 (24%), Gaps = 46/324 (14%)

Query: 204 IDALERYTQLASHPLHKTSKPGIVSLDIHYSKD---VIATGGVDTNAVLFDRPSGQIVTT 260
           ID  E+        +      G   +    +       AT     + V  D  +G+ +  
Sbjct: 16  ID-TEKMAVDKVITIADA---GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR 71

Query: 261 LSGHS-----KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-------- 307
           +   +     K +       +G       +   + +            +  +        
Sbjct: 72  IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF 131

Query: 308 DHTAEVQAVTVHATNKYFVTASLDNTWCFY----------------DLSSGICLTQVSDA 351
           +   ++  +              D                      +  +   +  V + 
Sbjct: 132 EAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ 191

Query: 352 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG 411
                           D            +   D+++     +    +      +     
Sbjct: 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA 251

Query: 412 YYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 469
              A  A++ ++ +DL K  + +      S     SV+    GS + +  A   +  Y  
Sbjct: 252 KTRAFGAYNVLESFDLEKNASIKRVPLPHS---YYSVNVSTDGSTVWLGGALGDLAAYDA 308

Query: 470 ASVKADWNCIKTFPDLSGTGAASF 493
            +++          DL G  + S 
Sbjct: 309 ETLE----KKGQV-DLPGNASMSL 327

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 5e-07
 Identities = 19/165 (11%), Positives = 43/165 (26%), Gaps = 19/165 (11%)

Query: 323 KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALV 381
            Y +  +  +     D         ++ A     P         P G +   T      +
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTP---MVPMVAPGGRIAYATVNKSESL 58

Query: 382 KIWDVKSQANVAKFDGHVG-----AVTAISFSENGYYLATAAHD----------GVKLWD 426
              D+ +   + + D         ++   + S +G  LA                     
Sbjct: 59  VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118

Query: 427 LRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVAS 471
           L   +     ++ ++      + +   GS L     D+ V    +
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA 163

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 16/149 (10%), Positives = 34/149 (22%), Gaps = 10/149 (6%)

Query: 258 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT 317
               S             + D     +    +       D         +    +V   +
Sbjct: 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM----DLETGEMAMREVRIMDVFYFS 245

Query: 318 VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 377
                         N    +DL     +           P  Y S     DG  +  G +
Sbjct: 246 TAVNPAKTRAFGAYNVLESFDLEKNASI------KRVPLPHSYYSVNVSTDGSTVWLGGA 299

Query: 378 EALVKIWDVKSQANVAKFDGHVGAVTAIS 406
              +  +D ++     + D    A  +++
Sbjct: 300 LGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 8e-07
 Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 13/210 (6%)

Query: 278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLK--DHTAEVQAVTVHATNKY-FVTASLDNTW 334
           D  L  +    + V              +   D         V    +  + T +   + 
Sbjct: 2   DYILAPARPDKLVVIDTE---KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESL 58

Query: 335 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVA 393
              DL +G  L ++  +  + R +    AA  PD   +    +   L           VA
Sbjct: 59  VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118

Query: 394 KFDGHVGAVTAISFSENGYYLATAAHDGVKLW------DLRKLKNFRSFESSDSETPTNS 447
            +D    +      +     +   A DG KL+       +   +     E    ++    
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE 178

Query: 448 VDFDHSGSYLAVASADIRVYQVASVKADWN 477
                    +        V       A  +
Sbjct: 179 TYAQPDVLAVWNQHESSGVMATPFYTARKD 208

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.1 bits (131), Expect = 8e-09
 Identities = 35/331 (10%), Positives = 74/331 (22%), Gaps = 50/331 (15%)

Query: 204 IDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV----- 258
           +D +   T   S  +     PG   +    ++          +    D  + +       
Sbjct: 23  VD-VASDTVYKSCVMPDKFGPGTAMMA-PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80

Query: 259 -TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT------- 310
            +      + + S     +G                           +  D         
Sbjct: 81  SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 140

Query: 311 -AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV--------------------S 349
               + V +                   D+ +G     +                     
Sbjct: 141 FPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH 200

Query: 350 DAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFS 408
            +        YT A F  D     T          D+K+     +              S
Sbjct: 201 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS 260

Query: 409 ENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRV 466
                      + +  +DL++ K  ++     +      V FD  G  L +      + V
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYY---CVAFDKKGDKLYLGGTFNDLAV 317

Query: 467 YQVASVKADWNCIKTFP----DLSGTGAASF 493
           +   +++     +K       D+S T    F
Sbjct: 318 FNPDTLE----KVKNIKLPGGDMSTTTPQVF 344

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 23/173 (13%), Positives = 47/173 (27%), Gaps = 14/173 (8%)

Query: 316 VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGT 374
             + A ++Y +  +  N     D++S               P     A   PD       
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSC-VMPDKFGPGT---AMMAPDNRTAYVL 57

Query: 375 GTSEALVKIWDVKSQANVAKFD------GHVGAVTAISFSENGYYLATAAHDGVKLWDLR 428
                 +   D+ +  N    +          ++ + + S +G  +    +   +L D  
Sbjct: 58  NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 117

Query: 429 KLKNFR---SFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNC 478
            +K  R      +   E             YL  A+ D  +Y         + 
Sbjct: 118 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDV 170

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 20/148 (13%), Positives = 34/148 (22%), Gaps = 12/148 (8%)

Query: 264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK 323
            S   T  +F  +     T                 +       D T           + 
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH--TQEFADLTELYFTGLRSPKDP 264

Query: 324 YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI 383
             +     N    YDL     +   +          Y   AF   G  L  G +   + +
Sbjct: 265 NQIYGV-LNRLAKYDLKQRKLIKAAN------LDHTYYCVAFDKKGDKLYLGGTFNDLAV 317

Query: 384 WDVKSQANVAKFD---GHVGAVTAISFS 408
           ++  +   V       G +   T   F 
Sbjct: 318 FNPDTLEKVKNIKLPGGDMSTTTPQVFI 345

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 13/137 (9%), Positives = 24/137 (17%), Gaps = 8/137 (5%)

Query: 364 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG-AVTAISFSENGYYLATAAHDG- 421
           A       +        + + DV S                    + +        +   
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 422 -VKLWDLRKLKNFRSFESSDSETPTNS----VDFDHSGSYLAVASADIRVYQVASVKADW 476
            +   DL   KN      S                  G  +       +           
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQR-LNDHYVVKP 121

Query: 477 NCIKTFPDLSGTGAASF 493
             ++ F    G  A   
Sbjct: 122 PRLEVFSTADGLEAKPV 138

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 24/225 (10%), Positives = 48/225 (21%), Gaps = 15/225 (6%)

Query: 271 VKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKY-FVTA 328
                  +  +  +    + V   + D       +             +   N+  +V  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLN 58

Query: 329 SLDNTWCFYDLSSGICLTQVSDAGT-DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK 387
           +        DL +       + +           S A  PDG  +    +          
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

Query: 388 SQAN----VAKFDGHVGAVTAISFSENGYYLATAAHDGVKL-----WDLRKLKNFRSFES 438
            +       +  DG               YL  AA DG             +K  +   +
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178

Query: 439 SDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFP 483
                            Y     +    + +    A +   K  P
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 223

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 27/221 (12%), Positives = 53/221 (23%), Gaps = 21/221 (9%)

Query: 231 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 290
           +  S     T     N ++        +  +     +               G    T  
Sbjct: 214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSH 273

Query: 291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 350
           +   S            D+  ++               +  N+   Y            D
Sbjct: 274 MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV-----------D 322

Query: 351 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN 410
           A  +   E   S A   D   +    S+   K   +   A  A        V    F+++
Sbjct: 323 ATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPI---AEWAGITEGQPRVVQGEFNKD 378

Query: 411 GYYL-----ATAAHDG-VKLWDLRKLKNFRSFESSDSETPT 445
           G  +          +  + + D + L+     +     TPT
Sbjct: 379 GTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPT 419

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (102), Expect = 4e-05
 Identities = 27/217 (12%), Positives = 53/217 (24%), Gaps = 16/217 (7%)

Query: 222 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL 281
            +P     D         T        L D  + +I T L      V   +    G    
Sbjct: 19  DRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLF 77

Query: 282 TGSADKTVRVWQGSEDGNYDCKH--TLKDHTAEVQAVTVHATNKY-FVTASLDNTWCFYD 338
               D  V +                  +  +   +      +KY    A     +   D
Sbjct: 78  VIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD 137

Query: 339 LSSGICL---------TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ 389
             +                 +   + R     ++ + P+ ++    T +  + + D    
Sbjct: 138 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK--ILLVDYTDL 195

Query: 390 ANVAKFDGHVGAVT-AISFSENGYYLATAAHDGVKLW 425
            N+   +              +  Y  TAA+   KL 
Sbjct: 196 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLV 232

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 279 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKY-FVTASLDNTWCFY 337
           +++     + + VW  + +G       + D   +VQ + V    +Y +V    +     Y
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 64

Query: 338 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 369
            ++        +           T  +    G
Sbjct: 65  RIAPDDGALTFAAESALPG--SLTHISTDHQG 94

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.0 bits (100), Expect = 7e-05
 Identities = 18/165 (10%), Positives = 43/165 (26%), Gaps = 11/165 (6%)

Query: 314 QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 373
           Q   +   N + VT          D  S   +  +    T         +     G  L 
Sbjct: 24  QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID---TGYAVHI---SRMSASGRYLL 77

Query: 374 TGTSEALVKIWDVKSQ-----ANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLR 428
               +A + + D+ ++     A +          ++        Y    A+   +   + 
Sbjct: 78  VIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 137

Query: 429 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVK 473
                     S      ++  +       A+ ++      + +VK
Sbjct: 138 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 182

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 3/56 (5%)

Query: 374 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDL 427
             +    + + DV S    A              S +G  +  A      V + D 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 7/65 (10%)

Query: 325 FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKI 383
           ++  S  +     D++S      +        P G   A   PDG  +         V I
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIP---VGSNPMG---AVISPDGTKVYVANAHSNDVSI 58

Query: 384 WDVKS 388
            D  +
Sbjct: 59  IDTAT 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	504
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.73
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.7
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.61
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.48
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.46
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.4
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.39
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.38
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.35
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.31
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.31
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.31
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.3
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.23
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.22
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.19
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.18
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.11
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.09
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.06
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.01
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.0
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.98
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.88
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.87
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.74
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.71
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.67
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.64
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.55
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.5
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.3
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.14
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.06
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.0
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	97.9
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.8
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.74
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	97.68
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.6
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.53
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.51
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.49
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.43
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.42
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	97.38
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.32
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.29
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.24
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.07
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.05
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.7
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.61
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.55
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.54
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	96.4
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.31
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.27
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.24
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.11
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	96.07
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.95
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.9
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.74
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.69
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.6
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.27
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.27
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.21
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.56
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	92.36
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.82
d1ibia2	31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	90.46
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	90.01
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	84.8

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-37  Score=298.14  Aligned_cols=264  Identities=16%  Similarity=0.259  Sum_probs=231.7

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce-----EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-----VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      .|...|+|++|+|+|++|++|+ ||.|+|||+.++..     .....+|.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            6889999999999999999997 89999999876532     33445799999999999999999999999999999987


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      .. .......+..|...+.++.|+|++.++++++.|+.|++||+.+++......     .|...+.+++|++++..+++|
T Consensus       128 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~-----~~~~~v~~l~~s~~~~~~~~~  201 (337)
T d1gxra_         128 AP-TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----GHTDGASCIDISNDGTKLWTG  201 (337)
T ss_dssp             CC---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEE
T ss_pred             cc-ccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccc
Confidence            53 235566778899999999999999999999999999999999998877665     667889999999999999999


Q ss_pred             eCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC
Q 010669          376 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG  454 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g  454 (504)
                      +.||.|++||+++++.+..+. |...|.+++|+|++.+|++++.++ |++||++++.....   ..+...|.+++|+|+|
T Consensus       202 ~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~i~~v~~s~~g  277 (337)
T d1gxra_         202 GLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL---HLHESCVLSLKFAYCG  277 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE---CCCSSCEEEEEECTTS
T ss_pred             cccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccccc---cccccccceEEECCCC
Confidence            999999999999999887776 788999999999999999999998 99999998776432   2346789999999999


Q ss_pred             CEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          455 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       455 ~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ++|++++.|  |++|++    .+++.+..+. |  .+.|++++|+|+|+.
T Consensus       278 ~~l~s~s~Dg~i~iwd~----~~~~~~~~~~-~--~~~v~~~~~s~d~~~  320 (337)
T d1gxra_         278 KWFVSTGKDNLLNAWRT----PYGASIFQSK-E--SSSVLSCDISVDDKY  320 (337)
T ss_dssp             SEEEEEETTSEEEEEET----TTCCEEEEEE-C--SSCEEEEEECTTSCE
T ss_pred             CEEEEEeCCCeEEEEEC----CCCCEEEEcc-C--CCCEEEEEEeCCCCE
Confidence            999999998  999998    6677787764 5  689999999999874

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-37  Score=292.00  Aligned_cols=268  Identities=21%  Similarity=0.400  Sum_probs=248.1

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ..+|.++|++++|+|++++|++|+.||+|+|||+.+++.+.++.+|...|.+++|++++.++++++.++.+.+|+.... 
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   91 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF-   91 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS-
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccc-
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999999998775 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d  378 (504)
                        .....+..|...+.++.|+|+++.+++++.|+.+++||+++++....+.     +|...+.+++|+|++.+|++|+.|
T Consensus        92 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          92 --ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-----GHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             --CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             --ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc-----cCCCcceeeecccCCCEEEEEeCC
Confidence              5566677899999999999999999999999999999999999888776     567789999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCC--------------------cEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENG--------------------YYLATAAHDG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g--------------------~~l~s~~~d~-v~vwd~~~~~~~~~~~  437 (504)
                      |.|++|++.+++.+..+.+|...+.++.|+|++                    .++++++.|+ |++||+++++.+..+.
T Consensus       165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  244 (317)
T d1vyhc1         165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  244 (317)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe
Confidence            999999999999999999999999999998753                    4688999998 9999999999998888


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .+  ...|.+++|+|++++|++|+.|  |+|||+    .+++.+.++.+|  .+.|++++|+++|+.
T Consensus       245 ~~--~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~----~~~~~~~~~~~h--~~~V~~~~~s~~~~~  303 (317)
T d1vyhc1         245 GH--DNWVRGVLFHSGGKFILSCADDKTLRVWDY----KNKRCMKTLNAH--EHFVTSLDFHKTAPY  303 (317)
T ss_dssp             CC--SSCEEEEEECSSSSCEEEEETTTEEEEECC----TTSCCCEEEECC--SSCEEEEEECSSSSC
T ss_pred             CC--CCCEEEEEECCCCCEEEEEECCCeEEEEEC----CCCcEEEEEcCC--CCCEEEEEEcCCCCE
Confidence            76  6789999999999999999988  999998    678899999999  889999999999864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-37  Score=303.46  Aligned_cols=249  Identities=18%  Similarity=0.213  Sum_probs=213.5

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc--eEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      |..+..+|+|++|+|+|++||+|+.||.|+|||..+++  .+..+.+|.++|++++|+|++++|++|+.|++|+|||+.+
T Consensus         3 ~~~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            44566889999999999999999999999999998765  5677889999999999999999999999999999999976


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                      . .......+.+|...|.+++|+|++++|++++.|+.+++|++............ ...|...|.+++|+|++.+|++|+
T Consensus        83 ~-~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~~~l~s~s  160 (371)
T d1k8kc_          83 R-TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAAGS  160 (371)
T ss_dssp             T-EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             c-ccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccc-ccccccccccccccccccceeccc
Confidence            3 33455666789999999999999999999999999999998765543322211 336778899999999999999999


Q ss_pred             CCCcEEEEEcCCC------------------ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669          377 SEALVKIWDVKSQ------------------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       377 ~dg~I~iwd~~~~------------------~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~  437 (504)
                      .||.|++||+...                  ..+....+|.+.|.+++|+|+|.+|++++.|+ |++||+.++..+..+.
T Consensus       161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  240 (371)
T d1k8kc_         161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  240 (371)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee
Confidence            9999999998543                  23455667889999999999999999999998 9999999999888887


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeec
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVAS  471 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~  471 (504)
                      .+  ..+|.+++|+|++.+|++|+++ +++|.++.
T Consensus       241 ~~--~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         241 SE--TLPLLAVTFITESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             CS--SCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             cc--cccceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence            65  6789999999999999887766 78887654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.3e-37  Score=292.21  Aligned_cols=255  Identities=20%  Similarity=0.271  Sum_probs=223.6

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      ..+++.+.+++++|+|+.|+.++ ++.|.+|++.++.....+.+|...|++++|+|+|++|++|+.||+|++||+.... 
T Consensus        14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~-   91 (311)
T d1nr0a1          14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT-   91 (311)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT-
T ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc-
Confidence            34455677889999999999886 5679999999999989999999999999999999999999999999999998753 


Q ss_pred             cceeEEeccCCcCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCE-EEEEe
Q 010669          300 YDCKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI-LGTGT  376 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~-l~~g~  376 (504)
                      ......+..|.+.|.+++|+|++++|++++.  +..+++|++++++....+.     +|...|++++|+|++.+ |++|+
T Consensus        92 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~-----~h~~~v~~v~~~~~~~~~l~sgs  166 (311)
T d1nr0a1          92 HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT-----GQARAMNSVDFKPSRPFRIISGS  166 (311)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC-----CCSSCEEEEEECSSSSCEEEEEE
T ss_pred             cccccccccccCcccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccceeeecccc
Confidence            2334567789999999999999999999986  4569999999987765553     67789999999999874 88899


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecC-----CCCCCeeEEEE
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS-----DSETPTNSVDF  450 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~-----~~~~~v~~i~~  450 (504)
                      .||.|++||+++++....+..|...|+++.|+|++.+|++++.|+ |++||++++.....+...     .|...|.+++|
T Consensus       167 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  246 (311)
T d1nr0a1         167 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW  246 (311)
T ss_dssp             TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999999998 999999988877666432     24578999999


Q ss_pred             CCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCC
Q 010669          451 DHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       451 ~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                      +|++++|++|+.|  |+|||+    .++++++++..|
T Consensus       247 s~~~~~l~tgs~Dg~v~iwd~----~t~~~~~~l~~~  279 (311)
T d1nr0a1         247 SPDGTKIASASADKTIKIWNV----ATLKVEKTIPVG  279 (311)
T ss_dssp             CTTSSEEEEEETTSEEEEEET----TTTEEEEEEECC
T ss_pred             CCCCCEEEEEeCCCeEEEEEC----CCCcEEEEEECC
Confidence            9999999999988  999998    678889988876

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-36  Score=288.92  Aligned_cols=242  Identities=17%  Similarity=0.255  Sum_probs=209.6

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce--EEEcccCccceeEEEEeeCCCEEEEEeC--CCcEEEEe
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSA--DKTVRVWQ  293 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~s~--dg~i~iwd  293 (504)
                      ...+|...|++++|+|+|++|++|+.||.|++||+.++..  ...+.+|.+.|.+++|+|++++|++++.  +..++||+
T Consensus        53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~  132 (311)
T d1nr0a1          53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL  132 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccc
Confidence            4567999999999999999999999999999999987754  3567889999999999999999999886  45699999


Q ss_pred             CCCCCCcceeEEeccCCcCeEEEEEccCCCE-EEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          294 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKY-FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      +.++   .....+.+|...|.+++|+|++++ |++|+.||.|++||+++++....+.     .|...|+++.|+|+++++
T Consensus       133 ~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~-----~~~~~i~~v~~~p~~~~l  204 (311)
T d1nr0a1         133 FDTG---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-----EHTKFVHSVRYNPDGSLF  204 (311)
T ss_dssp             TTTC---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-----CCSSCEEEEEECTTSSEE
T ss_pred             cccc---cccccccccccccccccccccceeeecccccccccccccccccccccccc-----cccccccccccCcccccc
Confidence            9876   566778899999999999999885 8889999999999999998887775     677899999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeee-------CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCC-CC
Q 010669          373 GTGTSEALVKIWDVKSQANVAKFD-------GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-ET  443 (504)
Q Consensus       373 ~~g~~dg~I~iwd~~~~~~~~~~~-------~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~-~~  443 (504)
                      ++|+.||.|++||++++..+..+.       +|.+.|++++|+|+|.+|++|+.|+ |+|||++++++++.+..+.. ..
T Consensus       205 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~  284 (311)
T d1nr0a1         205 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED  284 (311)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccc
Confidence            999999999999999988776653       5888999999999999999999999 99999999999888876531 12


Q ss_pred             CeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          444 PTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       444 ~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      .+.++.|  ++.+|++++.|  |++||.
T Consensus       285 ~~~~~~~--~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         285 QQLGIIW--TKQALVSISANGFINFVNP  310 (311)
T ss_dssp             CEEEEEE--CSSCEEEEETTCCEEEEET
T ss_pred             eEEEEEe--cCCEEEEEECCCEEEEEeC
Confidence            3444444  56678888888  999995

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-35  Score=283.69  Aligned_cols=273  Identities=21%  Similarity=0.314  Sum_probs=243.2

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|.++|++++|+|++++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|++.++++|+.|+.+++|+....
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~  129 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR  129 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSS
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999997764


Q ss_pred             CC-cceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          298 GN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       298 ~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                      .. ......+.+|.......... .+..+..+..|.....++...........     .+...+....+.+.+.++++|+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  203 (340)
T d1tbga_         130 EGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFT-----GHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             CSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEE-----CCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccceecccccccccccccc-ccccccccccccccccccccccccccccc-----ccceeEeeeccccccceeEEee
Confidence            32 24455667787766665554 56678888899999999998877666655     4456799999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      .|+.|++||+++++++..+.+|.+.|++++|+|++.+|++|+.|+ |++||++.......+....+...+.+++|+|+++
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred             cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCC
Confidence            999999999999999999999999999999999999999999998 9999999988888777666677899999999999


Q ss_pred             EEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          456 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       456 ~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +|++|+.|  |++||+    .+++++..+.+|  .+.|++++|+|+|+.
T Consensus       284 ~l~~g~~dg~i~iwd~----~~~~~~~~~~~H--~~~V~~l~~s~d~~~  326 (340)
T d1tbga_         284 LLLAGYDDFNCNVWDA----LKADRAGVLAGH--DNRVSCLGVTDDGMA  326 (340)
T ss_dssp             EEEEEETTSCEEEEET----TTCCEEEEECCC--SSCEEEEEECTTSSC
T ss_pred             EEEEEECCCEEEEEEC----CCCcEEEEEcCC--CCCEEEEEEeCCCCE
Confidence            99999998  999998    778999999999  889999999999864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-35  Score=287.14  Aligned_cols=262  Identities=21%  Similarity=0.382  Sum_probs=220.9

Q ss_pred             CCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc------------------cCccceeEEEEeeCCCEEEE
Q 010669          221 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS------------------GHSKKVTSVKFVTEGDLFLT  282 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~------------------~h~~~v~~l~~s~~~~~l~s  282 (504)
                      .|.+.|+||+|+|+|++|++|+ |+.|+|||+.+++.+..+.                  .|...|++++|+|++++|++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            5899999999999999999987 8999999999988776654                  35667999999999999999


Q ss_pred             EeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669          283 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       283 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  362 (504)
                      |+.||.|++||...+   .....+.+|...|.++.+++++..+++++.++.+++||.++.........     + ....+
T Consensus       139 ~~~dg~v~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----~-~~~~~  209 (388)
T d1erja_         139 GAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-----E-DGVTT  209 (388)
T ss_dssp             EETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-----S-SCEEE
T ss_pred             ccccccccccccccc---ccccccccccccccccccccccccccccccceeeeeeecccccccccccc-----c-ccccc
Confidence            999999999999875   67777889999999999999999999999999999999999887776642     2 34555


Q ss_pred             EEECC-CCCEEEEEeCCCcEEEEEcCCCceeeee-------eCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcce
Q 010669          363 AAFHP-DGLILGTGTSEALVKIWDVKSQANVAKF-------DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF  433 (504)
Q Consensus       363 ~~~~p-dg~~l~~g~~dg~I~iwd~~~~~~~~~~-------~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~  433 (504)
                      +.+++ ++.+|++|+.||.|++||++++..+..+       .+|.+.|++++|+|++.+|++++.|+ |++||++++...
T Consensus       210 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~  289 (388)
T d1erja_         210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK  289 (388)
T ss_dssp             EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred             ccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccc
Confidence            55555 8999999999999999999988776654       35788999999999999999999998 999999875543


Q ss_pred             eee----------ecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          434 RSF----------ESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       434 ~~~----------~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      ...          ....+...|.+++|+|+|++|++|+.|  |++||+    .+++++.++.+|  .+.|++++++.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~----~~~~~~~~l~~H--~~~V~~~~~~~  360 (388)
T d1erja_         290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK----KSGNPLLMLQGH--RNSVISVAVAN  360 (388)
T ss_dssp             ---------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET----TTCCEEEEEECC--SSCEEEEEECS
T ss_pred             cccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEEC----CCCcEEEEEeCC--CCCEEEEEEec
Confidence            211          112236789999999999999999998  999998    778999999999  88999987643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=280.32  Aligned_cols=238  Identities=18%  Similarity=0.282  Sum_probs=215.8

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC--ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ...|.+.|.+++|+|++++|++|+.||.|++||+...  +....+..|...+.+++|+|++.++++++.|+.|++|++.+
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3568889999999999999999999999999998744  55677888999999999999999999999999999999987


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                      .   ........|...|.+++|++++..+++++.||.+++||+++++.+..+.      +...|.+++|+|++.+|++|+
T Consensus       173 ~---~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~------~~~~i~~l~~~~~~~~l~~~~  243 (337)
T d1gxra_         173 Q---TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD------FTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             T---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEEEEECTTSSEEEEEE
T ss_pred             c---cccccccccccccccccccccccccccccccccccccccccceeecccc------cccceEEEEEcccccccceec
Confidence            5   6677778899999999999999999999999999999999998887763      456899999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      .||.|++||+++++.. ....|...|++++|+|+|.+|++++.|+ |++||+.+++.+..+..   ...|.+++|+|+++
T Consensus       244 ~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~d~~  319 (337)
T d1gxra_         244 ESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISVDDK  319 (337)
T ss_dssp             TTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSC
T ss_pred             cccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC---CCCEEEEEEeCCCC
Confidence            9999999999988765 4556899999999999999999999999 99999999988877653   57899999999999


Q ss_pred             EEEEEeCc--EEEEEe
Q 010669          456 YLAVASAD--IRVYQV  469 (504)
Q Consensus       456 ~l~~~~~d--i~vw~~  469 (504)
                      +|++|+.|  |+|||+
T Consensus       320 ~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         320 YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEEE
Confidence            99999998  999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-33  Score=266.23  Aligned_cols=272  Identities=15%  Similarity=0.172  Sum_probs=213.2

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS  295 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~  295 (504)
                      .+..+|.++|++++|+|++++|++|+.||+|++||+.+++.+..+. +|...|++++|+|++. +++++.|+.+++|+..
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSS
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccC
Confidence            4578899999999999999999999999999999999999888884 7899999999999986 5667789999999987


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      .............+...+.+++|+|++.++++++ ++.+.+|+....  .....       ...+.+++|+|++++|++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~--~~~~~-------~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL--TEVPI-------SYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE--EEEEC-------SSCEEEEEECTTSCEEEEE
T ss_pred             Cccccccccccccccccccccccccccccccccc-cccccccccccc--ccccc-------ccccccccccccccccccc
Confidence            6432222233345778899999999998777665 568999995432  22221       2458899999999999999


Q ss_pred             eCCCcEEEEEcCCCceee-eeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec-CCCCCCeeEEEECC
Q 010669          376 TSEALVKIWDVKSQANVA-KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDH  452 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~-~~~~~~v~~i~~~~  452 (504)
                      +.||.|++||+++++... ....|...|++++|+|++.+|++++.++ |++||+.++........ ..|...|.+++|+|
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP  234 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999998876543 3446889999999999999999999998 99999988765543322 23467899999999


Q ss_pred             CCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          453 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       453 ~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ++.+|++|+.|  |++|++...  ....+.....| +...|.++.+.+++.+
T Consensus       235 ~~~~l~sgs~dg~i~iwd~~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~l  283 (299)
T d1nr0a2         235 DNVRLATGSLDNSVIVWNMNKP--SDHPIIIKGAH-AMSSVNSVIWLNETTI  283 (299)
T ss_dssp             TSSEEEEEETTSCEEEEETTCT--TSCCEEETTSS-TTSCEEEEEEEETTEE
T ss_pred             cccceEEEcCCCEEEEEECCCC--CcceEEEecCC-CCCcEEEEEECCCCEE
Confidence            99999999998  999998442  22333444444 3456777655544444

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-32  Score=268.82  Aligned_cols=244  Identities=25%  Similarity=0.435  Sum_probs=207.6

Q ss_pred             cCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCC
Q 010669          220 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      ..|...|++++|+|++++|++|+.||.|++||...++.+..+.+|...|.++.|++++..+++++.+|.+++||..+.  
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--  195 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG--  195 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--
T ss_pred             cCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccc--
Confidence            457788999999999999999999999999999999999999999999999999999999999999999999999875  


Q ss_pred             cceeEEeccCCcCeEEEEEc-cCCCEEEEEeCCCeEEEEECCCCeEEEEeecC--CCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          300 YDCKHTLKDHTAEVQAVTVH-ATNKYFVTASLDNTWCFYDLSSGICLTQVSDA--GTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       300 ~~~~~~~~~h~~~v~~l~~~-p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                       ........+.. ..++.++ +++++|++++.||.|++||++++.....+...  ...+|...|.+++|+|++.+|++|+
T Consensus       196 -~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  273 (388)
T d1erja_         196 -QCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  273 (388)
T ss_dssp             -EEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             -ccccccccccc-cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence             44455544544 4455554 57899999999999999999999887766422  1236778999999999999999999


Q ss_pred             CCCcEEEEEcCCCce------------eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCC
Q 010669          377 SEALVKIWDVKSQAN------------VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET  443 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~------------~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~  443 (504)
                      .||.|++||++++..            ......|...|++++|+|+|.+|++|+.|+ |++||+++++.+..+..|  ..
T Consensus       274 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H--~~  351 (388)
T d1erja_         274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH--RN  351 (388)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC--SS
T ss_pred             CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC--CC
Confidence            999999999976532            344556889999999999999999999999 999999999999999876  67


Q ss_pred             CeeEEEE------CCCCCEEEEEeCc--EEEEEe
Q 010669          444 PTNSVDF------DHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       444 ~v~~i~~------~~~g~~l~~~~~d--i~vw~~  469 (504)
                      .|.++++      +|++.+|++|+.|  |+||++
T Consensus       352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence            8888874      6789999999998  999998

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.7e-32  Score=255.35  Aligned_cols=240  Identities=22%  Similarity=0.443  Sum_probs=222.7

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ...|...|.+++|++++.++++++.++.+.+|+....+....+.+|...+.++.|+++++.+++++.|+.+++||+.++ 
T Consensus        55 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-  133 (317)
T d1vyhc1          55 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-  133 (317)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-
T ss_pred             EeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccc-
Confidence            4568899999999999999999999999999999999999999999999999999999999999999999999999886 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC---------
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG---------  369 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg---------  369 (504)
                        .....+.+|...+.+++|+|++++|++++.|+.|++|++.++.....+.     .+...+.++.|+|++         
T Consensus       134 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~  206 (317)
T d1vyhc1         134 --YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-----EHRHVVECISWAPESSYSSISEAT  206 (317)
T ss_dssp             --CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECCSCGGGGGGGCC
T ss_pred             --eeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEe-----cCCCCceEEEEeeccccceeeccc
Confidence              6777888999999999999999999999999999999999998887775     566778888888753         


Q ss_pred             -----------CEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669          370 -----------LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       370 -----------~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~  437 (504)
                                 .++++|+.||.|++||+++++++..+.+|...|.+++|+|++.+|++|+.|+ |++||+++++.+..+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  286 (317)
T d1vyhc1         207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN  286 (317)
T ss_dssp             SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             cceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc
Confidence                       4789999999999999999999999999999999999999999999999999 9999999999999988


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEE
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQ  468 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~  468 (504)
                      .|  ...|++++|+|++++|++|+.|  |+|||
T Consensus       287 ~h--~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         287 AH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CC--SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CC--CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            76  6789999999999999999998  99996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-32  Score=265.26  Aligned_cols=230  Identities=15%  Similarity=0.145  Sum_probs=195.6

Q ss_pred             CccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCe
Q 010669          264 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI  343 (504)
Q Consensus       264 h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~  343 (504)
                      +..+|+|++|+|++++|++|+.||.|+|||..+ +.+..+..+.+|.+.|.+++|+|++++|++|+.|++|++||+.++.
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~-~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCC-CCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            347899999999999999999999999999876 3345778889999999999999999999999999999999999887


Q ss_pred             EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCcee----eeeeCCCCCeEEEEEcCCCcEEEEEeC
Q 010669          344 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV----AKFDGHVGAVTAISFSENGYYLATAAH  419 (504)
Q Consensus       344 ~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~----~~~~~~~~~i~~l~~s~~g~~l~s~~~  419 (504)
                      ....+.   ..+|...|.+++|+|+++.|++|+.|+.|++|++......    .....|...|.+++|+|+|.+|++|+.
T Consensus        85 ~~~~~~---~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~  161 (371)
T d1k8kc_          85 WKPTLV---ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  161 (371)
T ss_dssp             EEEEEE---CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             cccccc---cccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc
Confidence            665554   2366788999999999999999999999999998765432    334568889999999999999999999


Q ss_pred             Cc-EEEEEcCCCcce----------------eeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEE
Q 010669          420 DG-VKLWDLRKLKNF----------------RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIK  480 (504)
Q Consensus       420 d~-v~vwd~~~~~~~----------------~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~  480 (504)
                      |+ |++||+......                .......+...|.+++|+|+|++|++++.|  +++||+    ..+..+.
T Consensus       162 D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~----~~~~~~~  237 (371)
T d1k8kc_         162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA----DKKMAVA  237 (371)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG----GGTTEEE
T ss_pred             CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEee----eccccee
Confidence            98 999998653311                112233346789999999999999999988  999998    6678899


Q ss_pred             EccCCCCCCceeEEEEeecCccc
Q 010669          481 TFPDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       481 ~~~~h~~~~~v~~l~~~~~g~~~  503 (504)
                      .+..|  ..+|.+++|+++|++.
T Consensus       238 ~~~~~--~~~v~s~~fs~d~~~l  258 (371)
T d1k8kc_         238 TLASE--TLPLLAVTFITESSLV  258 (371)
T ss_dssp             EEECS--SCCEEEEEEEETTEEE
T ss_pred             eeecc--cccceeeeecCCCCEE
Confidence            99998  8899999999998753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8e-32  Score=258.66  Aligned_cols=243  Identities=13%  Similarity=0.176  Sum_probs=201.8

Q ss_pred             CCCCeEEEEecc--CCCEEEEEeCCCcEEEEcCCCCce--------EEEcccCccceeEEEEeeCCCEEEEEeC--CCcE
Q 010669          222 SKPGIVSLDIHY--SKDVIATGGVDTNAVLFDRPSGQI--------VTTLSGHSKKVTSVKFVTEGDLFLTGSA--DKTV  289 (504)
Q Consensus       222 ~~~~I~~~~~s~--~~~~l~sg~~dg~i~vwd~~~~~~--------~~~~~~h~~~v~~l~~s~~~~~l~s~s~--dg~i  289 (504)
                      |...|++++|+|  ++.+|++|+.||+|+|||+..++.        ...+..|.++|.+++|+++++++++++.  ++.+
T Consensus        62 ~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~  141 (325)
T d1pgua1          62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFG  141 (325)
T ss_dssp             TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSE
T ss_pred             CCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceE
Confidence            357899999998  567999999999999999865432        2345578899999999999999887764  6789


Q ss_pred             EEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCE-EEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669          290 RVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKY-FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       290 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd  368 (504)
                      ++|+..++   .++..+.+|...|.+++|+|++++ +++++.|+.+++||+...+.......  ...+...|.+++|+|+
T Consensus       142 ~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~--~~~~~~~v~~v~~~pd  216 (325)
T d1pgua1         142 VFISWDSG---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT--HHKQGSFVRDVEFSPD  216 (325)
T ss_dssp             EEEETTTC---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS--SSCTTCCEEEEEECST
T ss_pred             EEEeeccc---ccceeeeecccccccccccccccceEEEeecccccccccccccccceeccc--ccCCCCccEEeeeccc
Confidence            99999875   678888899999999999998875 67899999999999998877666543  3366788999999996


Q ss_pred             -CCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEc---CCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCC
Q 010669          369 -GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS---ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET  443 (504)
Q Consensus       369 -g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s---~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~  443 (504)
                       +.+|++|+.||.|++||+++++.+..+.+|..++.++.|+   ++|.+|++++.|+ |+|||+++++.+..+..+.+..
T Consensus       217 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~  296 (325)
T d1pgua1         217 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL  296 (325)
T ss_dssp             TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred             cceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcc
Confidence             6899999999999999999999999999888877666665   6899999999998 9999999999999888765544


Q ss_pred             CeeEEEECCC-CCEEEEEeCc--EEEEEe
Q 010669          444 PTNSVDFDHS-GSYLAVASAD--IRVYQV  469 (504)
Q Consensus       444 ~v~~i~~~~~-g~~l~~~~~d--i~vw~~  469 (504)
                      .+..+++.+. +.+|++++.|  |+|||+
T Consensus       297 ~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         297 GNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            4555544433 3478888888  999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-31  Score=258.05  Aligned_cols=268  Identities=20%  Similarity=0.334  Sum_probs=206.6

Q ss_pred             ccCCCCCe-EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          219 HKTSKPGI-VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       219 ~~~~~~~I-~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      .++|...| +|++|  ++++|++|+.||+|+|||+.+++.+.++.+|.+.|++++|+++ .+|++|+.||+|++|+....
T Consensus         8 L~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2           8 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTT
T ss_pred             ECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccc
Confidence            56787775 55554  6899999999999999999999999999999999999999975 58999999999999998875


Q ss_pred             CCcceeEEec--cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeec-------------------------
Q 010669          298 GNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD-------------------------  350 (504)
Q Consensus       298 ~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------------------------  350 (504)
                         .......  .+...+....+++++.++++++.|+.|++||+.+.........                         
T Consensus        85 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d1nexb2          85 ---CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  161 (355)
T ss_dssp             ---EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred             ---ccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence               3333322  2333445566777888888888888888888765432110000                         


Q ss_pred             ---------------------------C------CCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC
Q 010669          351 ---------------------------A------GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG  397 (504)
Q Consensus       351 ---------------------------~------~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~  397 (504)
                                                 .      ...++...+.++.|+|++.++++++.||.|++||++++..+..+.+
T Consensus       162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  241 (355)
T d1nexb2         162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG  241 (355)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             ccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc
Confidence                                       0      0013455678899999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCcc
Q 010669          398 HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKAD  475 (504)
Q Consensus       398 ~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~  475 (504)
                      |...|.+++|+  +.+|++++.|+ |++||+++.........   ........|++++.++++|+++ |+|||+    ++
T Consensus       242 h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~g~d~~i~vwd~----~t  312 (355)
T d1nexb2         242 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH---TNLSAITTFYVSDNILVSGSENQFNIYNL----RS  312 (355)
T ss_dssp             CSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEEC---TTCCCCCEEEECSSEEEEEETTEEEEEET----TT
T ss_pred             ccccccccccc--cceeeeeecccccccccccccceeccccc---CCceEEEEEcCCCCEEEEEeCCEEEEEEC----CC
Confidence            99999999996  56999999999 99999998765444332   2222334567888888888866 999999    66


Q ss_pred             ceeEE-EccCCCCCCceeEEEEeecCccc
Q 010669          476 WNCIK-TFPDLSGTGAASFLFLFVLGQTC  503 (504)
Q Consensus       476 ~~~i~-~~~~h~~~~~v~~l~~~~~g~~~  503 (504)
                      ++++. .+.+|  .+.|++++|.++..++
T Consensus       313 g~~~~~~~~~~--~~~V~~v~~~~~~~~~  339 (355)
T d1nexb2         313 GKLVHANILKD--ADQIWSVNFKGKTLVA  339 (355)
T ss_dssp             CCBCCSCTTTT--CSEEEEEEEETTEEEE
T ss_pred             CCEEEEEecCC--CCCEEEEEEcCCeEEE
Confidence            77775 46677  7899999998875543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1e-29  Score=243.07  Aligned_cols=263  Identities=19%  Similarity=0.432  Sum_probs=205.7

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      +.++|.+.|.+ +++++|++|++|+.||+|+|||+.+++++.++.+|.+.|.+++|++  ++|++|+.|+++++|+....
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~   87 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETG   87 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTTT
T ss_pred             EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceecccccccccccc
Confidence            45789998865 3667899999999999999999999999999999999999999975  48999999999999997653


Q ss_pred             CCcceeEEeccCCcCe--------------------------------------EEEEEccCCCEEEEEeCCCeEEEEEC
Q 010669          298 GNYDCKHTLKDHTAEV--------------------------------------QAVTVHATNKYFVTASLDNTWCFYDL  339 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v--------------------------------------~~l~~~p~~~~l~s~s~dg~i~iwd~  339 (504)
                      .   .......+...+                                      ....+.+....+++++.|+.|++||.
T Consensus        88 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~  164 (342)
T d2ovrb2          88 E---CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP  164 (342)
T ss_dssp             E---EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred             c---ceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec
Confidence            1   111111111111                                      11122334567888889999999999


Q ss_pred             CCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeC
Q 010669          340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH  419 (504)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~  419 (504)
                      .....+..+.     +|...+.  .+.+++.++++|+.||.|++||++.++.+..+.+|...+.++.++  +.+|++++.
T Consensus       165 ~~~~~~~~~~-----~~~~~~~--~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~  235 (342)
T d2ovrb2         165 ETETCLHTLQ-----GHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA  235 (342)
T ss_dssp             GGTEEEEEEC-----CCSSCEE--EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET
T ss_pred             ccceeeEEEc-----Ccccccc--cccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcC
Confidence            8888777765     4444444  455578899999999999999999999999999999999998885  469999999


Q ss_pred             Cc-EEEEEcCCCcceeeeecCC-CCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEcc-----CCCCCCc
Q 010669          420 DG-VKLWDLRKLKNFRSFESSD-SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP-----DLSGTGA  490 (504)
Q Consensus       420 d~-v~vwd~~~~~~~~~~~~~~-~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~-----~h~~~~~  490 (504)
                      |+ |++||+...+....+..+. +...+.++.+  +++++++|+.|  |+|||+    .+++.+..+.     +|  .+.
T Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~----~tg~~i~~~~~~~~~~~--~~~  307 (342)
T d2ovrb2         236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDL----KTGEFIRNLVTLESGGS--GGV  307 (342)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEET----TTCCEEEEEEECTTGGG--TCE
T ss_pred             CCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEEC----CCCCEEEEEecccCCCC--CCC
Confidence            98 9999999988777776532 3445666666  46799999998  999999    6677777664     34  678


Q ss_pred             eeEEEEeecCccc
Q 010669          491 ASFLFLFVLGQTC  503 (504)
Q Consensus       491 v~~l~~~~~g~~~  503 (504)
                      |++++|+|+|..+
T Consensus       308 v~~v~~s~~~~~l  320 (342)
T d2ovrb2         308 VWRIRASNTKLVC  320 (342)
T ss_dssp             EEEEEECSSEEEE
T ss_pred             EEEEEECCCCCEE
Confidence            9999999998753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=4.8e-30  Score=246.14  Aligned_cols=269  Identities=18%  Similarity=0.212  Sum_probs=209.2

Q ss_pred             CCeEEEEeccCCCEEEEEeCCC-cEEEEcCCCC--ceEEEcccCc-cceeEEEEee--CCCEEEEEeCCCcEEEEeCCCC
Q 010669          224 PGIVSLDIHYSKDVIATGGVDT-NAVLFDRPSG--QIVTTLSGHS-KKVTSVKFVT--EGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg-~i~vwd~~~~--~~~~~~~~h~-~~v~~l~~s~--~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ..+++++|+|+++.|+.++.+. .|+.|+....  ..+..+.+|. ..|++++|+|  ++.+|++|+.||+|+|||+..+
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            3467899999999999886554 3566765433  4466777774 6799999998  5679999999999999998754


Q ss_pred             CCcc-----eeEEeccCCcCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCC
Q 010669          298 GNYD-----CKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       298 ~~~~-----~~~~~~~h~~~v~~l~~~p~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~  370 (504)
                      ....     ....+..|.++|.+++|+++++++++++.  ++.+.+|+.++++.+..+.     +|...|.+++|+|++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~  172 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS-----GHSQRINACHLKQSRP  172 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC-----SCSSCEEEEEECSSSS
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee-----eccccccccccccccc
Confidence            3211     12234578899999999999999988765  6789999999998887775     6788999999999876


Q ss_pred             E-EEEEeCCCcEEEEEcCCCceeeee---eCCCCCeEEEEEcCC-CcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCC
Q 010669          371 I-LGTGTSEALVKIWDVKSQANVAKF---DGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP  444 (504)
Q Consensus       371 ~-l~~g~~dg~I~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~-g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~  444 (504)
                      + +++++.||.|++||++..+....+   ..|...|++++|+|+ +.+|++++.|+ |++||+++++.+..+..+  ...
T Consensus       173 ~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~--~~~  250 (325)
T d1pgua1         173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD--QEP  250 (325)
T ss_dssp             CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT--TBC
T ss_pred             ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccc--ccc
Confidence            4 678999999999999887765554   456778999999996 68999999998 999999999998888765  334


Q ss_pred             eeEEEEC---CCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEe--ecCccc
Q 010669          445 TNSVDFD---HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF--VLGQTC  503 (504)
Q Consensus       445 v~~i~~~---~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~--~~g~~~  503 (504)
                      +.++.|+   ++|++|++++.|  |+|||+    .+++++..+..|.+...+..+.+.  +++.++
T Consensus       251 v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (325)
T d1pgua1         251 VQGGIFALSWLDSQKFATVGADATIRVWDV----TTSKCVQKWTLDKQQLGNQQVGVVATGNGRII  312 (325)
T ss_dssp             CCSCEEEEEESSSSEEEEEETTSEEEEEET----TTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred             cccceeeeeccCCCEEEEEeCCCeEEEEEC----CCCCEEEEEEecCCcccCeEEEEEECCCCEEE
Confidence            4433343   689999999998  999998    678888888877444444444444  344443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.2e-29  Score=241.16  Aligned_cols=239  Identities=19%  Similarity=0.434  Sum_probs=208.0

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC----ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~  294 (504)
                      ...|..+|.+++|+|+++++++|+.|+.+.+|+....    .....+.+|........+. .+..+..+..|+....|..
T Consensus        93 ~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  171 (340)
T d1tbga_          93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDI  171 (340)
T ss_dssp             EECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEET
T ss_pred             EecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccc-ccccccccccccccccccc
Confidence            4568889999999999999999999999999997643    4566777888766666555 4556788888999999987


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      ...   ........+...+....+.+.+.++++++.|+.|++||+++++.+..+.     +|...|++++|+|++.+|++
T Consensus       172 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-----~h~~~i~~v~~~p~~~~l~s  243 (340)
T d1tbga_         172 ETG---QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-----GHESDINAICFFPNGNAFAT  243 (340)
T ss_dssp             TTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEE
T ss_pred             ccc---cccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEe-----CCCCCeEEEEECCCCCEEEE
Confidence            764   4445556777889999999999999999999999999999999888875     67789999999999999999


Q ss_pred             EeCCCcEEEEEcCCCceeeeee--CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669          375 GTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      |+.||.|++||++....+..+.  .+...|++++|+|+|.+|++|+.|+ |++||+.+++.+..+..|  ...|++++|+
T Consensus       244 ~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H--~~~V~~l~~s  321 (340)
T d1tbga_         244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVT  321 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEEC
T ss_pred             EeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEe
Confidence            9999999999999988776653  4667899999999999999999998 999999999999988776  6789999999


Q ss_pred             CCCCEEEEEeCc--EEEEE
Q 010669          452 HSGSYLAVASAD--IRVYQ  468 (504)
Q Consensus       452 ~~g~~l~~~~~d--i~vw~  468 (504)
                      |++.+|++|+.|  |+|||
T Consensus       322 ~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         322 DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEccCCEEEEeC
Confidence            999999999998  99996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.6e-29  Score=249.15  Aligned_cols=276  Identities=16%  Similarity=0.139  Sum_probs=203.7

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCc------eEEEcccCccceeEEEEe---e----CCCEEEEE
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ------IVTTLSGHSKKVTSVKFV---T----EGDLFLTG  283 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~l~~s---~----~~~~l~s~  283 (504)
                      ...++|...|.+++++  ++++++++.|++|+|||..+.+      .......|...+..+...   +    ++.+++++
T Consensus         8 ~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            4568999999999986  4799999999999999976543      122223344444333322   1    23468899


Q ss_pred             eCCCcEEEEeCCCCCCcceeEE-------eccCCcCeEEEEEccC-----CCEEEEEeCCCeEEEEECCCCe--------
Q 010669          284 SADKTVRVWQGSEDGNYDCKHT-------LKDHTAEVQAVTVHAT-----NKYFVTASLDNTWCFYDLSSGI--------  343 (504)
Q Consensus       284 s~dg~i~iwd~~~~~~~~~~~~-------~~~h~~~v~~l~~~p~-----~~~l~s~s~dg~i~iwd~~~~~--------  343 (504)
                      +.||.|++|++...........       ...+...+..++|.++     +.++++++.||.+++||+....        
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            9999999999765432111111       1134566788888765     4689999999999999974321        


Q ss_pred             -----EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee------eCCCCCeEEEEEcCCCc
Q 010669          344 -----CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF------DGHVGAVTAISFSENGY  412 (504)
Q Consensus       344 -----~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~------~~~~~~i~~l~~s~~g~  412 (504)
                           ............+...+.+++|+|++ +|++|+.||.|+|||+.+++++..+      .+|..+|++++|+|+|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence                 00111111123455678999999998 8899999999999999998876654      46889999999999999


Q ss_pred             EEEEEeCCc----EEEEEcCCCcceeeeecC-----------CCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCcc
Q 010669          413 YLATAAHDG----VKLWDLRKLKNFRSFESS-----------DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD  475 (504)
Q Consensus       413 ~l~s~~~d~----v~vwd~~~~~~~~~~~~~-----------~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~  475 (504)
                      +|++|+.|+    |++||+.+++.+..+...           .|...|++++|+|++++|++|+.|  |+|||+    .+
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~----~~  320 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV----KT  320 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET----TT
T ss_pred             eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC----CC
Confidence            999999873    899999998887776421           246789999999999999999999  999999    77


Q ss_pred             ceeEEEccCCCCCCcee----EEEEeecCc
Q 010669          476 WNCIKTFPDLSGTGAAS----FLFLFVLGQ  501 (504)
Q Consensus       476 ~~~i~~~~~h~~~~~v~----~l~~~~~g~  501 (504)
                      ++++.++.+|  .+.|.    .+.|.++|.
T Consensus       321 g~~~~~l~gH--~~~v~~~~~~~~~~~~~~  348 (393)
T d1sq9a_         321 KERITTLNMH--CDDIEIEEDILAVDEHGD  348 (393)
T ss_dssp             TEEEEEEECC--GGGCSSGGGCCCBCTTSC
T ss_pred             CCEEEEECCc--CCcccCCccEEEECCCCC
Confidence            8999999999  54443    355555554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-28  Score=234.56  Aligned_cols=276  Identities=12%  Similarity=0.087  Sum_probs=203.6

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE---EEcccCccceeEEEEeeCC-CEEEEEeCCCcEEEE
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV---TTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVW  292 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~---~~~~~h~~~v~~l~~s~~~-~~l~s~s~dg~i~iw  292 (504)
                      ++..+|++.|++|+|+|++++|++|+.||+|+|||+.++...   ....+|.++|.+++|+|++ .+|++|+.||+|++|
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            467889999999999999999999999999999998765432   2333699999999999864 579999999999999


Q ss_pred             eCCCCCCcceeEEec-cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeec-CCCCCCCCCeEEEEECCCCC
Q 010669          293 QGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD-AGTDGRPEGYTSAAFHPDGL  370 (504)
Q Consensus       293 d~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~pdg~  370 (504)
                      ++....   ...... .+........+.+++..+++++.|+.+++||++.+........ ............+.+.+++.
T Consensus        85 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          85 DLIGSP---SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             CSSSSS---SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eccccc---ccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            998753   233333 3334455666677889999999999999999865432222111 11112233456677888899


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeee---eeCCCCCeEEEEEcC-CCcEEEEEeCCc-EEEEEcCCCccee------eee--
Q 010669          371 ILGTGTSEALVKIWDVKSQANVAK---FDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFR------SFE--  437 (504)
Q Consensus       371 ~l~~g~~dg~I~iwd~~~~~~~~~---~~~~~~~i~~l~~s~-~g~~l~s~~~d~-v~vwd~~~~~~~~------~~~--  437 (504)
                      .+++++.||.|++||++.......   ...+...+.+..+.+ ++..+++++.++ +.+|++.......      .+.  
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            999999999999999987654332   233445566666655 678899999998 9999876433211      111  


Q ss_pred             -----cCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          438 -----SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       438 -----~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                           ...+...+++++|+|++++|++|+.|  |+|||+    .+.+.+.++..+   ..+..++|+++|..
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~----~~~~~l~~~~~~---~~~~~~~~s~~~~~  306 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL----QTRKKIKNFAKF---NEDSVVKIACSDNI  306 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET----TTTEEEEECCCC---SSSEEEEEEECSSE
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEEC----CCCcEEEEecCC---CCCEEEEEEeCCCE
Confidence                 11234578999999999999999999  999998    677888888654   34556777888764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=7.4e-28  Score=227.21  Aligned_cols=238  Identities=17%  Similarity=0.238  Sum_probs=187.0

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCce---EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI---VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~  294 (504)
                      +...|...|++++|+|++.++ +++.|+.+++|+......   ......+...+.+++|++++.++++++ ++.+++|+.
T Consensus        50 ~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~  127 (299)
T d1nr0a2          50 FPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSH  127 (299)
T ss_dssp             SSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEET
T ss_pred             EcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            445788999999999999765 556789999999764322   112235677899999999998776655 568999985


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      ..     .....  ....+.+++|+|++++|++|+.||.|++||++++........    .|...|++++|+|++.+|++
T Consensus       128 ~~-----~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~  196 (299)
T d1nr0a2         128 GK-----LTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI----VHPAEITSVAFSNNGAFLVA  196 (299)
T ss_dssp             TE-----EEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE----ECSSCEEEEEECTTSSEEEE
T ss_pred             cc-----ccccc--cccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccc
Confidence            42     22222  345678999999999999999999999999998875543321    46678999999999999999


Q ss_pred             EeCCCcEEEEEcCCCcee---eeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC-CCCCeeEEE
Q 010669          375 GTSEALVKIWDVKSQANV---AKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-SETPTNSVD  449 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~~---~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~-~~~~v~~i~  449 (504)
                      ++.||.|++||+.++...   ..+.+|...|++++|+|+|.+|++|+.|+ |++||++++.....+.... +...+..+.
T Consensus       197 ~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  276 (299)
T d1nr0a2         197 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI  276 (299)
T ss_dssp             EETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE
Confidence            999999999999887654   34567889999999999999999999998 9999999876544443332 244566665


Q ss_pred             ECCCCCEEEEEeCc--EEEEEe
Q 010669          450 FDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       450 ~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      | +++.+|++++.|  |++||+
T Consensus       277 ~-~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         277 W-LNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             E-EETTEEEEEETTSCEEEEEC
T ss_pred             E-CCCCEEEEEeCCCEEEEEec
Confidence            5 567899999988  999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-27  Score=219.57  Aligned_cols=261  Identities=20%  Similarity=0.365  Sum_probs=209.0

Q ss_pred             ccccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          217 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       217 ~~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ..+..|..+|+|++|  +|++|++|+.||+|+|||+.+++.+.++.+|.+.|++++|  ++++|++|+.||.|++|++..
T Consensus         9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2           9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             eccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccc
Confidence            346678899999765  7999999999999999999999999999999999999987  678999999999999999987


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT  376 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~  376 (504)
                      +   ........+...  ...+.+....++++..++.+.+||............  ...|...+.++.+.+  ..+++++
T Consensus        85 ~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~--~~~~~~s  155 (293)
T d1p22a2          85 G---EMLNTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV--LVGHRAAVNVVDFDD--KYIVSAS  155 (293)
T ss_dssp             C---CEEEEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEE--ECCCSSCEEEEEEET--TEEEEEE
T ss_pred             c---cccccccccccc--cccccccccceeecccccceeEeecccccccccccc--ccccccccccceecc--ccccccc
Confidence            5   333333333332  334455677899999999999999987654333321  125566777777765  4678889


Q ss_pred             CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          377 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       377 ~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      .|+.|++||+++++.+..+.++...+..+.++  +.++++++.|+ |++||+++...+..+..+  ...+.  .+++++.
T Consensus       156 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~--~~~~~~~  229 (293)
T d1p22a2         156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVR--CIRFDNK  229 (293)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEE--EEECCSS
T ss_pred             CCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeeccc--ceeee--eccccce
Confidence            99999999999999999999999999888885  56899999998 999999999888877654  34554  4567889


Q ss_pred             EEEEEeCc--EEEEEeeccC-----ccceeEEEccCCCCCCceeEEEEee
Q 010669          456 YLAVASAD--IRVYQVASVK-----ADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       456 ~l~~~~~d--i~vw~~~~~~-----~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      +|++|+.|  |++|++....     .....+..+.+|  .+.|++++|.+
T Consensus       230 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H--~~~V~~v~~d~  277 (293)
T d1p22a2         230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQFDE  277 (293)
T ss_dssp             EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEECS
T ss_pred             EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCC--CCCEEEEEEcC
Confidence            99999998  9999985432     234578899999  88999998843

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.1e-28  Score=226.51  Aligned_cols=251  Identities=16%  Similarity=0.182  Sum_probs=201.4

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|..+|++++|+|    |++|+.||+|++||+.++     ..+|...|.++.|+++ ..+++++.|++|++|++...
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~   77 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKH   77 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEE
T ss_pred             EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccccccccccc
Confidence            3578999999999987    999999999999998754     3579999999999865 46899999999999986541


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                                .....+..+.+++++..++++ .++.+.+|+..++.....+...        ....++++++..+++++.
T Consensus        78 ----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~  138 (287)
T d1pgua2          78 ----------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN--------SPGSAVSLSQNYVAVGLE  138 (287)
T ss_dssp             ----------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS--------SCEEEEEECSSEEEEEET
T ss_pred             ----------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc--------ceeeeeeccCcceeeecc
Confidence                      123457788888887766655 5667889999999888777521        234567777888888887


Q ss_pred             CC-cEEEEEcCCCceeeeee-CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceee-eecCCCCCCeeEEEECCC
Q 010669          378 EA-LVKIWDVKSQANVAKFD-GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS-FESSDSETPTNSVDFDHS  453 (504)
Q Consensus       378 dg-~I~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~-~~~~~~~~~v~~i~~~~~  453 (504)
                      ++ .|++|++...+....+. .|.+.+++++|+|+|.+|++|+.++ |++||+.++..... +..  |...|.+++|+|.
T Consensus       139 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--h~~~v~~~~~~p~  216 (287)
T d1pgua2         139 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF--RTSKINAISWKPA  216 (287)
T ss_dssp             TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC--CSSCEEEEEECCC
T ss_pred             ccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccc--cccccceeeeccc
Confidence            75 79999998766655554 4778999999999999999999998 99999998776543 333  3678999999874


Q ss_pred             ----------CCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcccC
Q 010669          454 ----------GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQTCS  504 (504)
Q Consensus       454 ----------g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~~s  504 (504)
                                +.++++|+.|  |+||++.   +..+.+..+.+|  .+.|+++.|.++++++|
T Consensus       217 ~~~~~~~~~~~~~l~sgs~D~~i~iw~~~---~~~~~~~~~~~h--~~~V~~v~~~~~~~l~s  274 (287)
T d1pgua2         217 EKGANEEEIEEDLVATGSLDTNIFIYSVK---RPMKIIKALNAH--KDGVNNLLWETPSTLVS  274 (287)
T ss_dssp             C------CCSCCEEEEEETTSCEEEEESS---CTTCCEEETTSS--TTCEEEEEEEETTEEEE
T ss_pred             ccccccccCCCCeeEeecCCCeEEEEECC---CCCeEEEEeCCC--CCCeEEEEECCCCEEEE
Confidence                      5689999998  9999983   335678888898  88999999999987654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.8e-25  Score=212.05  Aligned_cols=239  Identities=18%  Similarity=0.290  Sum_probs=182.5

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCc--cceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHS--KKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ..+|..+|++++|+++ ++|++|+.||.|++|+....+.......+.  ..+....+++++.++++++.|+.|++||+..
T Consensus        49 l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~  127 (355)
T d1nexb2          49 LSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK  127 (355)
T ss_dssp             EECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC
T ss_pred             EECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccC
Confidence            4678999999999985 689999999999999998887665554333  3344555666777788888888888887643


Q ss_pred             CCC------------------------------------------------------------cceeEEeccCCcCeEEE
Q 010669          297 DGN------------------------------------------------------------YDCKHTLKDHTAEVQAV  316 (504)
Q Consensus       297 ~~~------------------------------------------------------------~~~~~~~~~h~~~v~~l  316 (504)
                      ...                                                            ........++...+.++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  207 (355)
T d1nexb2         128 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST  207 (355)
T ss_dssp             -----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             Cceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccc
Confidence            210                                                            02223344566778899


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 010669          317 TVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD  396 (504)
Q Consensus       317 ~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~  396 (504)
                      .|+|+++++++++.|+.|++||++++..+..+.     +|...|.+++|++  ++|++|+.||.|++||++++.....  
T Consensus       208 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-----~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~--  278 (355)
T d1nexb2         208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQ-----GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFS--  278 (355)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEE--
T ss_pred             cccccceeeecccccceEEeeeccccccccccc-----ccccccccccccc--ceeeeeecccccccccccccceecc--
Confidence            999999999999999999999999999888775     6778899999974  6899999999999999988765443  


Q ss_pred             CCCCCeEEE-EEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          397 GHVGAVTAI-SFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       397 ~~~~~i~~l-~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      .|...+.++ .|++++.+|++|+++.|++||+++++.+..... .+...|.+++|+|+ .++++++.|  +.||.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~-~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         279 YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL-KDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTT-TTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             cccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEec-CCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            455555554 567788888887644499999999988764332 23678999999986 467777777  556554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-24  Score=206.72  Aligned_cols=237  Identities=27%  Similarity=0.463  Sum_probs=186.4

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCcccee----------------------------
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVT----------------------------  269 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~----------------------------  269 (504)
                      ...+|...|.+++|++  ++|++|+.|+.+++|+............+...+.                            
T Consensus        52 ~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  129 (342)
T d2ovrb2          52 TLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC  129 (342)
T ss_dssp             ECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE
T ss_pred             EEeCCCCCEEEEEeCC--CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccc
Confidence            3467899999999986  4999999999999999876544333322221111                            


Q ss_pred             ----------EEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 010669          270 ----------SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL  339 (504)
Q Consensus       270 ----------~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~  339 (504)
                                ...+.+....+++++.|+.|++||....   .....+.+|...+..+.+  ++.++++++.||.|++||+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~  204 (342)
T d2ovrb2         130 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE---TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV  204 (342)
T ss_dssp             EEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT---EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEET
T ss_pred             eeeeecccccceeeccccceeeeecCCCeEEEeecccc---eeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeec
Confidence                      1223345557888889999999998765   667778888777666554  6899999999999999999


Q ss_pred             CCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC---CCCCeEEEEEcCCCcEEEE
Q 010669          340 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG---HVGAVTAISFSENGYYLAT  416 (504)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~---~~~~i~~l~~s~~g~~l~s  416 (504)
                      +.++.+..+.     +|...+.++++++  ++|++|+.||.|++||+...+....+..   |...+.++.|  ++.++++
T Consensus       205 ~~~~~~~~~~-----~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s  275 (342)
T d2ovrb2         205 ETGNCIHTLT-----GHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVIT  275 (342)
T ss_dssp             TTCCEEEEEC-----CCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEE
T ss_pred             ccceeeeEec-----ccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEE
Confidence            9999887775     5667788887764  6999999999999999999887777754   5567777777  5679999


Q ss_pred             EeCCc-EEEEEcCCCcceeeeecC---CCCCCeeEEEECCCCCEEEEEeCc------EEEEEee
Q 010669          417 AAHDG-VKLWDLRKLKNFRSFESS---DSETPTNSVDFDHSGSYLAVASAD------IRVYQVA  470 (504)
Q Consensus       417 ~~~d~-v~vwd~~~~~~~~~~~~~---~~~~~v~~i~~~~~g~~l~~~~~d------i~vw~~~  470 (504)
                      |+.|+ |++||+++++.++.+...   .+...|++++|+|++.+|++|+.|      +++||++
T Consensus       276 ~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         276 SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            99999 999999999988877542   235679999999999999999766      7889984

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4e-26  Score=224.49  Aligned_cols=224  Identities=14%  Similarity=0.245  Sum_probs=174.5

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCce----E-EEc-----ccCccceeEEEEeeC-----CCEEEEEeCCCcEEEEeCCCCCC
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQI----V-TTL-----SGHSKKVTSVKFVTE-----GDLFLTGSADKTVRVWQGSEDGN  299 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~----~-~~~-----~~h~~~v~~l~~s~~-----~~~l~s~s~dg~i~iwd~~~~~~  299 (504)
                      +.++++++.||.|++|++.....    . ...     ..+...+..++|.++     +.++++++.||++++|++.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            34788999999999998653321    1 111     234566788888764     45789999999999999753211


Q ss_pred             ------------c---ceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-CCCCCCCCeEEE
Q 010669          300 ------------Y---DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA-GTDGRPEGYTSA  363 (504)
Q Consensus       300 ------------~---~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~  363 (504)
                                  .   ........+...+.+++|+|++ +|++|+.||+|++||+.+++.+..+... ...+|...|.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l  237 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  237 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc
Confidence                        0   0111122455678999999987 8999999999999999999988776532 234788999999


Q ss_pred             EECCCCCEEEEEeCCCc---EEEEEcCCCceeeeee-------------CCCCCeEEEEEcCCCcEEEEEeCCc-EEEEE
Q 010669          364 AFHPDGLILGTGTSEAL---VKIWDVKSQANVAKFD-------------GHVGAVTAISFSENGYYLATAAHDG-VKLWD  426 (504)
Q Consensus       364 ~~~pdg~~l~~g~~dg~---I~iwd~~~~~~~~~~~-------------~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd  426 (504)
                      +|+|||++|++|+.|++   |++||+.+++.+..+.             +|.+.|++++|+|+|++|++|+.|+ |++||
T Consensus       238 ~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            99999999999998874   9999999988776653             7999999999999999999999998 99999


Q ss_pred             cCCCcceeeeecCCCCCCe----eEEEECCCCCEEEEEe
Q 010669          427 LRKLKNFRSFESSDSETPT----NSVDFDHSGSYLAVAS  461 (504)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~v----~~i~~~~~g~~l~~~~  461 (504)
                      +.+++++.++..|  ...|    ..++|++++..+++++
T Consensus       318 ~~~g~~~~~l~gH--~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         318 VKTKERITTLNMH--CDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             TTTTEEEEEEECC--GGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CCCCCEEEEECCc--CCcccCCccEEEECCCCCEEEEcc
Confidence            9999999999876  3333    3578999998877554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=7.8e-25  Score=211.18  Aligned_cols=189  Identities=13%  Similarity=0.086  Sum_probs=158.8

Q ss_pred             EEEEecc-CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCCccee
Q 010669          227 VSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDCK  303 (504)
Q Consensus       227 ~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~  303 (504)
                      .+-+||| ||+++++++ +|.|++||+..+..+..  +|...|.+++|+|||++|++++.+.  .|++||..++    ..
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~----~~   78 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG----KA   78 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC----CE
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC----cE
Confidence            3567999 999999887 57999999988776653  6899999999999999988776553  7999999874    44


Q ss_pred             EEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-------
Q 010669          304 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-------  376 (504)
Q Consensus       304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-------  376 (504)
                      ..+..|...|.+++|+|++++|++++.++.+++|++.+++....+.     .+...+.+++|+|||++|+.+.       
T Consensus        79 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~la~~~~~~~~~~  153 (360)
T d1k32a3          79 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-----SREAMITDFTISDNSRFIAYGFPLKHGET  153 (360)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred             EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeee-----cccccccchhhccceeeeeeeccccccce
Confidence            5677899999999999999999999999999999999998877765     4556789999999999998653       


Q ss_pred             ---CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcC
Q 010669          377 ---SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR  428 (504)
Q Consensus       377 ---~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~  428 (504)
                         .++.+++||+.+++..... .+...+..+.|+|+|++|++++.++ +.+||..
T Consensus       154 ~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         154 DGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             CSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             eeccccceeeeccccCceeeec-ccccccccccccCCCCEEEEEeCCCceEccccc
Confidence               3456999999887665444 4667889999999999999999887 8888753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.4e-24  Score=198.72  Aligned_cols=229  Identities=14%  Similarity=0.176  Sum_probs=177.4

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      ...|...|.+++++++ ..+++++.|+++++|+....+       ....+.++.+++++..++++ .++.+.+|+...+ 
T Consensus        42 ~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-  111 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTG-  111 (287)
T ss_dssp             ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTC-
T ss_pred             CCCCCCCEEEEEecCC-CeEEEEeeccccccccccccc-------cccceeeeeeccCCceEEEe-ecccceeeeccce-
Confidence            4578889999999875 457889999999999975321       23457788888887766665 5557888887765 


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEEeCCC-eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                        .....+..+ ..+  .++++++..+++++.|+ .+++|++........+.    ..+...+++++|+|++.+|++|+.
T Consensus       112 --~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~g~~  182 (287)
T d1pgua2         112 --DIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK----TPLRAKPSYISISPSETYIAAGDV  182 (287)
T ss_dssp             --CEEEEEECS-SCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECS----SCCSSCEEEEEECTTSSEEEEEET
T ss_pred             --eeeeecccc-cee--eeeeccCcceeeeccccceeeeeeccccceeeeee----eccCCceeEEEeccCccccccccc
Confidence              445555433 333  45677788888888775 79999998766555543    245678999999999999999999


Q ss_pred             CCcEEEEEcCCCceee-eeeCCCCCeEEEEEcCC----------CcEEEEEeCCc-EEEEEcCCCc-ceeeeecCCCCCC
Q 010669          378 EALVKIWDVKSQANVA-KFDGHVGAVTAISFSEN----------GYYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETP  444 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~----------g~~l~s~~~d~-v~vwd~~~~~-~~~~~~~~~~~~~  444 (504)
                      ||.|++||+.+++... .+.+|...|++++|+|+          +.+|++|+.|+ |++||+++.. .+..+..|  ...
T Consensus       183 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~  260 (287)
T d1pgua2         183 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDG  260 (287)
T ss_dssp             TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTC
T ss_pred             cccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC--CCC
Confidence            9999999999887654 46789999999999874          46899999998 9999998744 44444444  678


Q ss_pred             eeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          445 TNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       445 v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      |++++|+|++ .|++++.|  |++|++
T Consensus       261 V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         261 VNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            9999999986 57778878  999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.1e-23  Score=192.93  Aligned_cols=232  Identities=23%  Similarity=0.428  Sum_probs=188.9

Q ss_pred             cccCCCCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 010669          218 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED  297 (504)
Q Consensus       218 ~~~~~~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~  297 (504)
                      ...+|.+.|++++|  ++++|++|+.||.|++|++..+........+....  ..+.+....++++..++.+.+|+....
T Consensus        50 ~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (293)
T d1p22a2          50 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASP  125 (293)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSS
T ss_pred             EEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccccc--ccccccccceeecccccceeEeecccc
Confidence            34679999999987  57899999999999999999988777766554433  344556778999999999999999876


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS  377 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~  377 (504)
                      ........+..|...|..+.+.  ...+++++.|+.|++||+++++.+..+.     ++...+..+.++  +..+++++.
T Consensus       126 ~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~~--~~~l~~~~~  196 (293)
T d1p22a2         126 TDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLN-----GHKRGIACLQYR--DRLVVSGSS  196 (293)
T ss_dssp             SCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEEE--TTEEEEEET
T ss_pred             ccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEc-----ccccccccccCC--CCeEEEecC
Confidence            5555566677888889888775  5678899999999999999999888776     455667777665  568999999


Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc---------ceeeeecCCCCCCeeE
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK---------NFRSFESSDSETPTNS  447 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~---------~~~~~~~~~~~~~v~~  447 (504)
                      ||.|++||+++.+.+..+.+|...+..  +++++.+|++|+.|+ |++||+....         .+..+..|  ...|++
T Consensus       197 dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H--~~~V~~  272 (293)
T d1p22a2         197 DNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFR  272 (293)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCC
T ss_pred             CCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCC--CCCEEE
Confidence            999999999999999999988888876  455788999999999 9999976432         34445444  678999


Q ss_pred             EEECCCCCEEEEEeCc--EEEEE
Q 010669          448 VDFDHSGSYLAVASAD--IRVYQ  468 (504)
Q Consensus       448 i~~~~~g~~l~~~~~d--i~vw~  468 (504)
                      ++|+  +.+|++++.|  |+|||
T Consensus       273 v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         273 LQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEEc--CCEEEEEecCCEEEEeC
Confidence            9995  5789999998  99997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.5e-23  Score=195.32  Aligned_cols=244  Identities=16%  Similarity=0.170  Sum_probs=181.4

Q ss_pred             CCCCCeEEEEeccCC-CEEEEEeCCCcEEEEcCCCCceEEEcccCccce-eEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 010669          221 TSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKV-TSVKFVTEGDLFLTGSADKTVRVWQGSEDG  298 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v-~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~  298 (504)
                      .|..+|.+++|+|++ .+|++|+.||.|++|+...+........+...+ ....+.+++..+++++.|+++++||+....
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~  133 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred             CCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence            588999999999875 589999999999999998887777666555444 455566788899999999999999986532


Q ss_pred             Cc-ceeEEeccC--CcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC-CCCEEEE
Q 010669          299 NY-DCKHTLKDH--TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGT  374 (504)
Q Consensus       299 ~~-~~~~~~~~h--~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-dg~~l~~  374 (504)
                      .. ........+  ......+.+.+.++.+++++.||.|++||+............  ......+.+..+.+ ++..+++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  211 (342)
T d1yfqa_         134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE--SGLKYQIRDVALLPKEQEGYAC  211 (342)
T ss_dssp             TBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEE--CSCSSCEEEEEECSGGGCEEEE
T ss_pred             cceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeee--cccccceeeeEeecCCCCEEEe
Confidence            11 122222222  234456677888999999999999999999876543322211  12334566666665 7789999


Q ss_pred             EeCCCcEEEEEcCCCcee---------------eeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeec
Q 010669          375 GTSEALVKIWDVKSQANV---------------AKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       375 g~~dg~I~iwd~~~~~~~---------------~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~  438 (504)
                      ++.||.+.+|++......               ....+|...|++++|+|++.+|++|+.|| |++||+.+++.+..+..
T Consensus       212 ~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC
Confidence            999999999998643211               11134667899999999999999999999 99999999988877654


Q ss_pred             CCCCCCeeEEEECCCCCEEEEEeCc--EEEEEe
Q 010669          439 SDSETPTNSVDFDHSGSYLAVASAD--IRVYQV  469 (504)
Q Consensus       439 ~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~  469 (504)
                      .   ..+..++|+|+|+++++++.|  +++|..
T Consensus       292 ~---~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         292 F---NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             C---SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             C---CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            3   356678888999999987666  777654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=6e-23  Score=203.81  Aligned_cols=244  Identities=14%  Similarity=0.089  Sum_probs=179.6

Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee---EEeccCCcC
Q 010669          236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK---HTLKDHTAE  312 (504)
Q Consensus       236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~h~~~  312 (504)
                      -++++.+.||.|+|||+.+++.+.++..|. .+..++|+|||++|++++.||+|++||+.++.. ...   ....+|.+.
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~-~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEP-TKVAEIKIGIEARSV  110 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-EEEEEEECCSEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCce-eEEEEEeCCCCCcce
Confidence            356788899999999999999999999775 589999999999999999999999999988632 222   222356677


Q ss_pred             eEEEEEccCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCCC--------------------------------------
Q 010669          313 VQAVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGT--------------------------------------  353 (504)
Q Consensus       313 v~~l~~~p~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~--------------------------------------  353 (504)
                      +.++.|+|||++++++ ..++.+.+||..++...........                                      
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            7788889999987554 5789999999988765543321000                                      


Q ss_pred             ------------CCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEEcCCCc------------------------------
Q 010669          354 ------------DGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQA------------------------------  390 (504)
Q Consensus       354 ------------~~~~~~v~~~~~~pdg~~l~~g~-~dg~I~iwd~~~~~------------------------------  390 (504)
                                  ..+...+..+.|+|++++++++. .+..+.+||..+++                              
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (426)
T d1hzua2         191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST  270 (426)
T ss_dssp             ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEE
T ss_pred             EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEe
Confidence                        01123345788999998777664 33445556544332                              


Q ss_pred             ------------------------eeeeeeCCCCCeEEEEEcCCCcEEEEE-------eCCc-EEEEEcCCCcceeeeec
Q 010669          391 ------------------------NVAKFDGHVGAVTAISFSENGYYLATA-------AHDG-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       391 ------------------------~~~~~~~~~~~i~~l~~s~~g~~l~s~-------~~d~-v~vwd~~~~~~~~~~~~  438 (504)
                                              ....+.+|...+..++|+|+|.+|++.       +.++ |+|||+.+++...++..
T Consensus       271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~  350 (426)
T d1hzua2         271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP  350 (426)
T ss_dssp             ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred             ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec
Confidence                                    233455677788999999999999953       3345 99999999887665421


Q ss_pred             -------CCCCCCeeEEEECCCCCEEEEEe-----Cc--EEEEEeeccCccceeEEEccCC
Q 010669          439 -------SDSETPTNSVDFDHSGSYLAVAS-----AD--IRVYQVASVKADWNCIKTFPDL  485 (504)
Q Consensus       439 -------~~~~~~v~~i~~~~~g~~l~~~~-----~d--i~vw~~~~~~~~~~~i~~~~~h  485 (504)
                             ..+...+..++|+|||+++++++     .+  |+|||.    ++++.+..+.++
T Consensus       351 ~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~----~T~k~~~~i~~~  407 (426)
T d1hzua2         351 IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD----KTLKLKAVVKDP  407 (426)
T ss_dssp             HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEET----TTTEEEEEECCT
T ss_pred             cchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEEC----CCCeEEEEECCC
Confidence                   22355788999999999875432     23  999997    888888888876

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=5.3e-22  Score=191.03  Aligned_cols=158  Identities=11%  Similarity=0.055  Sum_probs=133.6

Q ss_pred             ccCCCCCeEEEEeccCCCEEEEEeCCC--cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 010669          219 HKTSKPGIVSLDIHYSKDVIATGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE  296 (504)
Q Consensus       219 ~~~~~~~I~~~~~s~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~  296 (504)
                      ...|...|.+++|+|||++|++++.+.  .|++||..+++. ..+..|...|.+++|+|++++|++++.++.+++|++.+
T Consensus        38 ~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~  116 (360)
T d1k32a3          38 KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET  116 (360)
T ss_dssp             ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccccc
Confidence            346888999999999999988776553  799999987765 46678999999999999999999999999999999987


Q ss_pred             CCCcceeEEeccCCcCeEEEEEccCCCEEEEEe----------CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEEC
Q 010669          297 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS----------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH  366 (504)
Q Consensus       297 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  366 (504)
                      .   .....+..|...+.+++|+|+|++|+.++          .++.+++||+.+++.....      .+...+..++|+
T Consensus       117 ~---~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~------~~~~~~~~~~~s  187 (360)
T d1k32a3         117 G---KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT------TENSHDYAPAFD  187 (360)
T ss_dssp             C---CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS------CSSSBEEEEEEC
T ss_pred             c---ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec------cccccccccccc
Confidence            6   56667778889999999999999998654          3456999999988765443      344678889999


Q ss_pred             CCCCEEEEEeCCCcEEEEEc
Q 010669          367 PDGLILGTGTSEALVKIWDV  386 (504)
Q Consensus       367 pdg~~l~~g~~dg~I~iwd~  386 (504)
                      |||+.|++++.++.+.+||.
T Consensus       188 pdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         188 ADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             TTSCEEEEEESCCCCCEECS
T ss_pred             CCCCEEEEEeCCCceEcccc
Confidence            99999999999999988875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=3.5e-20  Score=173.52  Aligned_cols=242  Identities=14%  Similarity=0.165  Sum_probs=194.8

Q ss_pred             EEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEE
Q 010669          239 ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT  317 (504)
Q Consensus       239 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~  317 (504)
                      ++++.|++|.+||+.+++.+.++... ..+..++|+|||++| ++++.++.|++||+.+.   ..+..+..+. .+..+.
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~---~~~~~~~~~~-~~~~~~   80 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQGVA   80 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEEEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---ceeeeeeccc-cccccc
Confidence            45678999999999999999988754 457899999999977 56678899999999876   6677776664 478999


Q ss_pred             EccCCCEEEE-EeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCceeeee
Q 010669          318 VHATNKYFVT-ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSEALVKIWDVKSQANVAKF  395 (504)
Q Consensus       318 ~~p~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~-~g~~dg~I~iwd~~~~~~~~~~  395 (504)
                      |++++.++++ +..++.+.+||..+++....+..      .....++.|+|+|..++ ++..++.+.+|+..+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccccccccccccceeeecccccceeeeeccc------cccceEEEeecCCCeeeeeeccccceeeeeccccceeeec
Confidence            9999986554 55678999999999988887752      24678999999998775 4556788999999999888887


Q ss_pred             eCCCCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-----EEEEE
Q 010669          396 DGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQ  468 (504)
Q Consensus       396 ~~~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-----i~vw~  468 (504)
                      ..+ ..+..+.+++++.++++++.+.  +.+|+.........+..   ...+..++|++++..+++++.+     +.+||
T Consensus       155 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D  230 (301)
T d1l0qa2         155 SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (301)
T ss_dssp             ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             ccC-CCceEEEeeccccceeeecccccccccccccceeeeecccc---cCCcceeeccccccccccccccceeeeeeeee
Confidence            744 5688999999999888887764  88888887776666654   3567889999999988766432     88999


Q ss_pred             eeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          469 VASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       469 ~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .    .+++.+..+..+   ..+.+++|+|+|+.
T Consensus       231 ~----~t~~~~~~~~~~---~~~~~va~spdg~~  257 (301)
T d1l0qa2         231 T----GTNKITARIPVG---PDPAGIAVTPDGKK  257 (301)
T ss_dssp             T----TTTEEEEEEECC---SSEEEEEECTTSSE
T ss_pred             c----CCCeEEEEEcCC---CCEEEEEEeCCCCE
Confidence            7    678888888663   46899999999973

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=1.1e-19  Score=169.99  Aligned_cols=242  Identities=14%  Similarity=0.141  Sum_probs=191.1

Q ss_pred             CCeEEEEeccCCCEE-EEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCCcc
Q 010669          224 PGIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYD  301 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~~~~~~~~  301 (504)
                      .....++|+|||++| ++++.++.|.+||+.+++.+..+..+.. +..+.|++++..++ ++..++.+.+|+..++   .
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  107 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSN---T  107 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTT---E
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccc---e
Confidence            357889999999977 5667889999999999999999887754 68999999988654 5567788999999875   5


Q ss_pred             eeEEeccCCcCeEEEEEccCCCEEE-EEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC-C
Q 010669          302 CKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-A  379 (504)
Q Consensus       302 ~~~~~~~h~~~v~~l~~~p~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d-g  379 (504)
                      ....+.. .....++.|+|++..++ ++..++.+.+|+..++.....+..      ...+.++.++|++..+++++.+ +
T Consensus       108 ~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  180 (301)
T d1l0qa2         108 VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV------GRSPKGIAVTPDGTKVYVANFDSM  180 (301)
T ss_dssp             EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------CSSEEEEEECTTSSEEEEEETTTT
T ss_pred             eeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc------CCCceEEEeeccccceeeeccccc
Confidence            5555544 45678999999998765 455688899999999988887752      2458899999999988877765 6


Q ss_pred             cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCC
Q 010669          380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS  455 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~  455 (504)
                      .+.+|+....+....+.. ...+..++|+++|..++.++.+   + |++||+.+++.+..+...   ..+.+++|+|||+
T Consensus       181 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~---~~~~~va~spdg~  256 (301)
T d1l0qa2         181 SISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVTPDGK  256 (301)
T ss_dssp             EEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC---SSEEEEEECTTSS
T ss_pred             ccccccccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC---CCEEEEEEeCCCC
Confidence            677788777766666653 4567889999999887765433   4 999999999988877653   4689999999999


Q ss_pred             EEE-EEeCc--EEEEEeeccCccceeEEEccC
Q 010669          456 YLA-VASAD--IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       456 ~l~-~~~~d--i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      +|+ +++.+  |++||+    .+++.+.++..
T Consensus       257 ~l~va~~~~~~i~v~D~----~t~~~~~~~~v  284 (301)
T d1l0qa2         257 KVYVALSFCNTVSVIDT----ATNTITATMAV  284 (301)
T ss_dssp             EEEEEETTTTEEEEEET----TTTEEEEEEEC
T ss_pred             EEEEEECCCCeEEEEEC----CCCeEEEEEeC
Confidence            875 45444  999998    67788887753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.3e-20  Score=179.13  Aligned_cols=230  Identities=12%  Similarity=0.041  Sum_probs=178.7

Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEccc--CccceeEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCCcceeEEeccCC--
Q 010669          236 DVIATGGVDTNAVLFDRPSGQIVTTLSG--HSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKDHT--  310 (504)
Q Consensus       236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~--  310 (504)
                      +++++++.|++|.|||+.+++.+..+..  +...+.+++|+|||+++ ++++.++.|.+||+.++   +.+..+..+.  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~---~~~~~~~~~~~~   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---ETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---CEEEEEECCBTT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC---cEEEEEecCCCc
Confidence            5899999999999999999999988864  34567899999999987 56678999999999886   5555554433  


Q ss_pred             ---cCeEEEEEccCCCEEEEEe------------CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          311 ---AEVQAVTVHATNKYFVTAS------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       311 ---~~v~~l~~~p~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                         ..+..++|+|+++++++++            .++.+.+||..++.....+..      ...+.+++|+|||++++++
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~  152 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------PRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC------CSSCCCEEECTTSSCEEEE
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc------cCCceEEEEcCCCCEEEEE
Confidence               3455789999999998876            367899999999998877752      2457889999999999988


Q ss_pred             eCCCcEEEEEcCCCceeeee------------------------------------------------------------
Q 010669          376 TSEALVKIWDVKSQANVAKF------------------------------------------------------------  395 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~------------------------------------------------------------  395 (504)
                      +.+  +.+||..+++....+                                                            
T Consensus       153 ~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (337)
T d1pbyb_         153 GRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE  230 (337)
T ss_dssp             SSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred             cCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc
Confidence            644  667887655432221                                                            


Q ss_pred             ------eCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEE
Q 010669          396 ------DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVY  467 (504)
Q Consensus       396 ------~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw  467 (504)
                            ..+...+..+.+++++.+++++. +.|++||+.+++.+..+..   ...+.+++|+|||++|++++.+  |+||
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~---~~~~~~~~~s~dG~~l~v~~~~~~i~v~  306 (337)
T d1pbyb_         231 MAMREVRIMDVFYFSTAVNPAKTRAFGAY-NVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAY  306 (337)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEE-SEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred             EEEEEecCCCcceEEEEecccceEEEEcc-ccEEEEECCCCcEEEEEcC---CCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence                  11233455667788888776653 3499999999999888865   3568999999999999999887  9999


Q ss_pred             EeeccCccceeEEEccC
Q 010669          468 QVASVKADWNCIKTFPD  484 (504)
Q Consensus       468 ~~~~~~~~~~~i~~~~~  484 (504)
                      |.    .+++.+.+++.
T Consensus       307 D~----~t~~~v~~i~~  319 (337)
T d1pbyb_         307 DA----ETLEKKGQVDL  319 (337)
T ss_dssp             ET----TTCCEEEEEEC
T ss_pred             EC----CCCcEEEEEEC
Confidence            98    66777777654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=3.1e-21  Score=184.34  Aligned_cols=256  Identities=10%  Similarity=0.039  Sum_probs=181.0

Q ss_pred             EEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCCcceeEEe
Q 010669          229 LDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTL  306 (504)
Q Consensus       229 ~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~  306 (504)
                      ++|++++++|++++.+++|.+||+.+++.+.++. .|...+.+++|+|||+++ ++++.++.|.+||+.++   +.+..+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~---~~~~~~   78 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC---KNTFHA   78 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC---eeeeee
Confidence            4689999999999999999999999999999886 456678999999999986 55567899999999886   444443


Q ss_pred             ccC------CcCeEEEEEccCCCEEEEEe------------CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCC
Q 010669          307 KDH------TAEVQAVTVHATNKYFVTAS------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       307 ~~h------~~~v~~l~~~p~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pd  368 (504)
                      ...      ...+..++|+|+|+++++++            .++.+.+||..+++....+...   .....+..+.++++
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  155 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF---PMPRQVYLMRAADD  155 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE---ECCSSCCCEEECTT
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee---eccCceEEEEecCC
Confidence            321      22456789999999888775            4678889988776543322110   01122333344444


Q ss_pred             CCEEEEE----------------------------------------------------------------eCCCcEEEE
Q 010669          369 GLILGTG----------------------------------------------------------------TSEALVKIW  384 (504)
Q Consensus       369 g~~l~~g----------------------------------------------------------------~~dg~I~iw  384 (504)
                      +.+++.+                                                                ..++.+.+|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             SCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             CEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            4433321                                                                112234444


Q ss_pred             EcCCCceee-eeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc
Q 010669          385 DVKSQANVA-KFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD  463 (504)
Q Consensus       385 d~~~~~~~~-~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d  463 (504)
                      |+.++.... .+..|...+..+.+++++.+++....+.|.+||+.+++.+..+..   ...+.+++|+|||++|++++.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~d  312 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTF  312 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBS
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEeCC
Confidence            444443322 223455667788888888888887777799999999998887765   3468999999999999999888


Q ss_pred             --EEEEEeeccCccceeEEEccCCCCCCceeEEEEe
Q 010669          464 --IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLF  497 (504)
Q Consensus       464 --i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~  497 (504)
                        |+|||.    .+++.+.+++...+...++...+|
T Consensus       313 ~~v~v~D~----~t~~~i~~i~~p~g~~~~~~~~~~  344 (346)
T d1jmxb_         313 NDLAVFNP----DTLEKVKNIKLPGGDMSTTTPQVF  344 (346)
T ss_dssp             SEEEEEET----TTTEEEEEEECSSSCCBTCCCEEE
T ss_pred             CcEEEEEC----ccCCEEEEEECCCCCcceeEEEEE
Confidence              999998    789999888866444445544444

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=2.8e-19  Score=177.16  Aligned_cols=237  Identities=11%  Similarity=-0.012  Sum_probs=175.2

Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCc--ceeEEeccCC
Q 010669          233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY--DCKHTLKDHT  310 (504)
Q Consensus       233 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~h~  310 (504)
                      ++.-++++.+.+|+|.|||..+++++..+..|. .+..++|+|||+++++++.||+|++||+.++...  ..+.....|.
T Consensus        30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~  108 (432)
T d1qksa2          30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR  108 (432)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             CCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence            333356889999999999999999999998774 6999999999999999999999999999875321  1122233566


Q ss_pred             cCeEEEEEccCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCC------CCCCCCCeEEEEECCCCCEEE-EEeCCCcEE
Q 010669          311 AEVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAG------TDGRPEGYTSAAFHPDGLILG-TGTSEALVK  382 (504)
Q Consensus       311 ~~v~~l~~~p~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~v~~~~~~pdg~~l~-~g~~dg~I~  382 (504)
                      +.+.+..|+|||+++ ++++.++.|.+||..+++.+..+....      ...+......+.++|+|..++ +...++.|.
T Consensus       109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  188 (432)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             CeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE
Confidence            667777889999976 678889999999999999887765321      112334567889999998764 556789999


Q ss_pred             EEEcCCCceeeeee-CCCCCeEEEEEcCCCcEEEEEeCCc--EEEEEcCCCcceeeeecCC---CCCCeeEEEECCCCCE
Q 010669          383 IWDVKSQANVAKFD-GHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSD---SETPTNSVDFDHSGSY  456 (504)
Q Consensus       383 iwd~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~~~d~--v~vwd~~~~~~~~~~~~~~---~~~~v~~i~~~~~g~~  456 (504)
                      +||..+.+...... .+...+..++|+|+|+++++++.++  +.++|..+++....+....   +........+...+.+
T Consensus       189 ~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~  268 (432)
T d1qksa2         189 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV  268 (432)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred             EEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCce
Confidence            99998876544332 2456789999999999988888775  9999999888776665421   2233444555555555


Q ss_pred             EEEEeC-c--EEEEEee
Q 010669          457 LAVASA-D--IRVYQVA  470 (504)
Q Consensus       457 l~~~~~-d--i~vw~~~  470 (504)
                      .++... +  +.+|...
T Consensus       269 ~~~~~lg~~~v~~~~~~  285 (432)
T d1qksa2         269 WATSHMGDDSVALIGTD  285 (432)
T ss_dssp             EEEEBSSSSEEEEEECC
T ss_pred             ecccccCCceEEecccc
Confidence            555542 2  7777653

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=4.1e-21  Score=129.41  Aligned_cols=55  Identities=47%  Similarity=0.826  Sum_probs=53.3

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccccC
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKT   55 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~   55 (504)
                      |+|+|+++++++||+++++||+|||++|++||+++++||+|+++|+.+|||++|.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dLipik~   55 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP   55 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhceeCCC
Confidence            7899999999999999999999999999999999999999999999999999963

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.2e-17  Score=158.53  Aligned_cols=260  Identities=11%  Similarity=0.107  Sum_probs=178.6

Q ss_pred             EEEEEeCCCcEEEEcCCCCceEEEc--ccCccceeEEEEeeCCCEEEEEe-CCCcEEEEeCCCCCCcceeEEeccCCcCe
Q 010669          237 VIATGGVDTNAVLFDRPSGQIVTTL--SGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHTLKDHTAEV  313 (504)
Q Consensus       237 ~l~sg~~dg~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  313 (504)
                      .+++++.|++|++|++.....+..+  ..|.+.+..++|+|||++|++++ .|+.|++|++..............+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4577889999999998755333222  35778899999999999886555 58999999987653221222222344567


Q ss_pred             EEEEEccCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEEcCCCce
Q 010669          314 QAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EALVKIWDVKSQAN  391 (504)
Q Consensus       314 ~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~-dg~I~iwd~~~~~~  391 (504)
                      ..++|+|+|+++++++. ++.+.+|+.............   .+...+.++.++|+++++++++. +..|.+|+......
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  162 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV---EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  162 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE---CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceeccccc---CCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence            78999999999999885 678999998877655544321   34456888999999998887764 46799999876543


Q ss_pred             eeee------eCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcce----eeeec----CCCCCCeeEEEECCCCC
Q 010669          392 VAKF------DGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNF----RSFES----SDSETPTNSVDFDHSGS  455 (504)
Q Consensus       392 ~~~~------~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~----~~~~~----~~~~~~v~~i~~~~~g~  455 (504)
                      ....      .........++|++++.+++..... + ..+|+.......    ..+..    .........++++++++
T Consensus       163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  242 (333)
T d1ri6a_         163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR  242 (333)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred             ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence            2211      1234567899999999888777655 3 788876543211    11111    11234567789999999


Q ss_pred             EEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          456 YLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       456 ~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ++++....   +.+|++............. .+  .+.+.+++|+|+|+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~p~~~a~spDGk~  289 (333)
T d1ri6a_         243 HLYACDRTASLITVFSVSEDGSVLSKEGFQ-PT--ETQPRGFNVDHSGKY  289 (333)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEE-EC--SSSCCCEEECTTSSE
T ss_pred             ceeeecccCCeEEEEEEcCCCCEEEEEEEe-CC--CCCeeEEEEeCCCCE
Confidence            88877654   9999985543333333322 22  456789999999984

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.79  E-value=9.6e-17  Score=155.04  Aligned_cols=256  Identities=11%  Similarity=-0.020  Sum_probs=179.8

Q ss_pred             CCCCCeEEEEeccCCCEEEEE-----eCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe----------C
Q 010669          221 TSKPGIVSLDIHYSKDVIATG-----GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------A  285 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg-----~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s----------~  285 (504)
                      .+..++.+++++|||+.+++.     +.++.|.+||..+++.+..+..+...  .++|+|||++|++++          .
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence            467789999999999988764     24567999999999999988766543  799999999998875          4


Q ss_pred             CCcEEEEeCCCCCCcceeEEeccCCcCe-------EEEEEccCCCEEEEEe--CCCeEEEEECCCCeEEEEeecCCCCCC
Q 010669          286 DKTVRVWQGSEDGNYDCKHTLKDHTAEV-------QAVTVHATNKYFVTAS--LDNTWCFYDLSSGICLTQVSDAGTDGR  356 (504)
Q Consensus       286 dg~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~l~~~p~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~  356 (504)
                      ++.|.+||..++   +....+..+....       ..+.|+++++.++...  .++.+.+|+....+......       
T Consensus        96 ~~~v~v~D~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-------  165 (373)
T d2madh_          96 TDYVEVFDPVTF---LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-------  165 (373)
T ss_pred             ceEEEEEECCCC---cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-------
Confidence            578999999886   5555554444332       4577888888666554  45678899988776554442       


Q ss_pred             CCCeEEEEECCCCCE-EEEEeCCCcEEEEEcCCCceeeeee---------------------------------------
Q 010669          357 PEGYTSAAFHPDGLI-LGTGTSEALVKIWDVKSQANVAKFD---------------------------------------  396 (504)
Q Consensus       357 ~~~v~~~~~~pdg~~-l~~g~~dg~I~iwd~~~~~~~~~~~---------------------------------------  396 (504)
                        ...++.++|+|.. +++.+.||.+.+||...+.......                                       
T Consensus       166 --~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         166 --SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA  243 (373)
T ss_pred             --cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCC
Confidence              3567888888764 4567788888888875543322110                                       


Q ss_pred             ----------CCC----------CCeEEEEEcCCCcEEEE----------EeCCc-EEEEEcCCCcceeeeecCCCCCCe
Q 010669          397 ----------GHV----------GAVTAISFSENGYYLAT----------AAHDG-VKLWDLRKLKNFRSFESSDSETPT  445 (504)
Q Consensus       397 ----------~~~----------~~i~~l~~s~~g~~l~s----------~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v  445 (504)
                                .+.          .....+++++++..++.          ...++ +.+||+.+++.+..+..   ...+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~---~~~~  320 (373)
T d2madh_         244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDV  320 (373)
T ss_pred             CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC---CCCe
Confidence                      000          01122455555554432          33344 88999999888877754   4578


Q ss_pred             eEEEECCCCCEE--EEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          446 NSVDFDHSGSYL--AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       446 ~~i~~~~~g~~l--~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      ..++|+|||+.+  ++++.|  |+|||+    .+++.+.++.+|  ....+.|++..+
T Consensus       321 ~~~a~spDG~~~l~vt~~~d~~v~v~D~----~tg~~~~~~~~~--g~~P~~l~~~~~  372 (373)
T d2madh_         321 DAISVAQDGGPDLYALSAGTEVLHIYDA----GAGDQDQSTVEL--GSGPQVLSVMNE  372 (373)
T ss_pred             eEEEECCCCCEEEEEEeCCCCeEEEEEC----CCCCEEEEECCC--CCCCcEEEEecC
Confidence            899999999853  455555  999998    788999999887  556777776543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=8.8e-17  Score=152.35  Aligned_cols=263  Identities=16%  Similarity=0.221  Sum_probs=178.5

Q ss_pred             CCCCCeEEEEeccCCCEEEEEe-CCCcEEEEcCCCCceEEEc---ccCccceeEEEEeeCCCEEEEEeC-CCcEEEEeCC
Q 010669          221 TSKPGIVSLDIHYSKDVIATGG-VDTNAVLFDRPSGQIVTTL---SGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGS  295 (504)
Q Consensus       221 ~~~~~I~~~~~s~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~---~~h~~~v~~l~~s~~~~~l~s~s~-dg~i~iwd~~  295 (504)
                      .|...+..++|+|||++|++++ .|+.|.+|++........+   ..+...+..++|+|||++|++++. ++.|.+|+..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            4567899999999999885554 5899999998765432222   234455788999999999888875 6789999877


Q ss_pred             CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCeEEEEeec-CCCCCCCCCeEEEEECCCCCEEE
Q 010669          296 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSD-AGTDGRPEGYTSAAFHPDGLILG  373 (504)
Q Consensus       296 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~pdg~~l~  373 (504)
                      .... ........+...+.++.++|+++++++++. +..|.+|+............ ............++|++++.+++
T Consensus       114 ~~~~-~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~  192 (333)
T d1ri6a_         114 DGLP-VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  192 (333)
T ss_dssp             TTEE-EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             cccc-eecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence            6422 223333456677889999999998888775 45799999876543322110 00112234568899999998876


Q ss_pred             EEe-CCCcEEEEEcCCCce----eeeee------CCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeec-C
Q 010669          374 TGT-SEALVKIWDVKSQAN----VAKFD------GHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFES-S  439 (504)
Q Consensus       374 ~g~-~dg~I~iwd~~~~~~----~~~~~------~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~-~  439 (504)
                      ... ..+...+|+......    .....      ........+.+++++++++..... + +.+|++........... .
T Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (333)
T d1ri6a_         193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ  272 (333)
T ss_dssp             EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred             eeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe
Confidence            654 556788888754321    11111      123457788999999988777654 4 99998876544333322 1


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccC
Q 010669          440 DSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       440 ~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      .....+.+++|+|||++|++++.+   |++|+++..+...+.+..+..
T Consensus       273 ~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~  320 (333)
T d1ri6a_         273 PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV  320 (333)
T ss_dssp             ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred             CCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEeccC
Confidence            123567889999999999888754   999988664444456666654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=2.2e-17  Score=156.53  Aligned_cols=213  Identities=15%  Similarity=0.128  Sum_probs=162.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCcceeEEecc--CCcCeEEEEEccCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 010669          278 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKD--HTAEVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTD  354 (504)
Q Consensus       278 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  354 (504)
                      +++++++.|++|.|||+.+.   +.+..+..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+......
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~---~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             eEEEEEcCCCEEEEEECCCC---eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc
Confidence            57999999999999999886   66666653  44567899999999987 46678999999999999988877643222


Q ss_pred             CCCCCeEEEEECCCCCEEEEEe------------CCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcE
Q 010669          355 GRPEGYTSAAFHPDGLILGTGT------------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV  422 (504)
Q Consensus       355 ~~~~~v~~~~~~pdg~~l~~g~------------~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v  422 (504)
                      .+...+..++|+|++++++++.            .++.+.+||..+++....+.. ...+..++|+|+|.++++++.+ +
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~-~  156 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD-L  156 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS-E
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC-c
Confidence            2234466899999999998876            457899999999988888874 4568899999999999988643 6


Q ss_pred             EEEEcCCCcceeeeecC---------------------------------------------------------------
Q 010669          423 KLWDLRKLKNFRSFESS---------------------------------------------------------------  439 (504)
Q Consensus       423 ~vwd~~~~~~~~~~~~~---------------------------------------------------------------  439 (504)
                      .+||..+++....+...                                                               
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T d1pbyb_         157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             ceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence            77887665433322110                                                               


Q ss_pred             -CCCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          440 -DSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       440 -~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                       .+...+..+.+++++.+++++...+++||+    .+++.+..+..   ...+.+++|+|+|+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~----~~~~~~~~~~~---~~~~~~~~~s~dG~~  293 (337)
T d1pbyb_         237 RIMDVFYFSTAVNPAKTRAFGAYNVLESFDL----EKNASIKRVPL---PHSYYSVNVSTDGST  293 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEESEEEEEET----TTTEEEEEEEC---SSCCCEEEECTTSCE
T ss_pred             cCCCcceEEEEecccceEEEEccccEEEEEC----CCCcEEEEEcC---CCCEEEEEECCCCCE
Confidence             012234567788899998888766999998    77888888753   567899999999974

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.1e-17  Score=165.58  Aligned_cols=187  Identities=18%  Similarity=0.086  Sum_probs=144.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEE--EEeecCCC
Q 010669          276 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL--TQVSDAGT  353 (504)
Q Consensus       276 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~  353 (504)
                      +.-++++.+.||+|.|||..++   +++..+..| ..+..++|+|||+++++++.||.+.+||+.+++..  ..+..  .
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~---~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~--~  104 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTY---EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--G  104 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTC---CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--C
T ss_pred             CcEEEEEEcCCCEEEEEECCCC---cEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec--C
Confidence            3334689999999999999886   778888766 46999999999999999999999999999887643  33321  1


Q ss_pred             CCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEEcCCCceeeeeeCC-----------CCCeEEEEEcCCCcEEEEEeC-C
Q 010669          354 DGRPEGYTSAAFHPDGLIL-GTGTSEALVKIWDVKSQANVAKFDGH-----------VGAVTAISFSENGYYLATAAH-D  420 (504)
Q Consensus       354 ~~~~~~v~~~~~~pdg~~l-~~g~~dg~I~iwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~g~~l~s~~~-d  420 (504)
                      ..+...+.+..|+|||++| +++..++.|++||..+++++..+..|           .+....+.++++|..++.+.. +
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence            1334455666778899976 67888999999999999988776543           345677899999987765544 4


Q ss_pred             c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669          421 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV  469 (504)
Q Consensus       421 ~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~  469 (504)
                      + |.+||..+.+......... ...+..++|+|+|+++++++.+   +.+++.
T Consensus       185 ~~i~~~d~~~~~~~~~~~i~~-g~~~~~~~~spdg~~~~va~~~~~~v~v~d~  236 (432)
T d1qksa2         185 GKILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVIDT  236 (432)
T ss_dssp             TEEEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             CeEEEEEccCCCcceEEEEcc-cCccccceECCCCCEEEEeccccceEEEeec
Confidence            5 9999998877554433321 4568899999999999988866   888886

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=2.4e-17  Score=157.96  Aligned_cols=259  Identities=10%  Similarity=0.056  Sum_probs=179.9

Q ss_pred             EEEEeccCCCEEEEEe-----CCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe----------CCCcEEE
Q 010669          227 VSLDIHYSKDVIATGG-----VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRV  291 (504)
Q Consensus       227 ~~~~~s~~~~~l~sg~-----~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s----------~dg~i~i  291 (504)
                      .-.+.+||++.+++..     .++.|.+||..+++.+.++..+..  ..++|+|||++|++++          .|+.|++
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            3345689999887653     456799999999999998876544  4799999999887643          4789999


Q ss_pred             EeCCCCCCcceeEEeccCC-------cCeEEEEEccCCCEEEEEe--CCCeEEEEECCCCeEEEEeecCCC---------
Q 010669          292 WQGSEDGNYDCKHTLKDHT-------AEVQAVTVHATNKYFVTAS--LDNTWCFYDLSSGICLTQVSDAGT---------  353 (504)
Q Consensus       292 wd~~~~~~~~~~~~~~~h~-------~~v~~l~~~p~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~---------  353 (504)
                      ||..++   +....+..+.       .....+.|+|++++++.++  .+..+.+||..+++....+.....         
T Consensus        83 ~D~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d2bbkh_          83 FDPVTL---LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD  159 (355)
T ss_dssp             ECTTTC---CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred             EECCCC---CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCc
Confidence            999886   4444433221       2335688999999887765  467899999998876654431100         


Q ss_pred             -------------------------------CCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceee--eeeCC--
Q 010669          354 -------------------------------DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA--KFDGH--  398 (504)
Q Consensus       354 -------------------------------~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~--~~~~~--  398 (504)
                                                     ..+...+....+.+++..++.++.++.+++|++..+....  ....+  
T Consensus       160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  239 (355)
T d2bbkh_         160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE  239 (355)
T ss_dssp             EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred             ceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCccc
Confidence                                           0111123345666677778888899999999998765321  12211  


Q ss_pred             --------CCCeEEEEEcCCCcEEEEEeCC----------c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCE--E
Q 010669          399 --------VGAVTAISFSENGYYLATAAHD----------G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY--L  457 (504)
Q Consensus       399 --------~~~i~~l~~s~~g~~l~s~~~d----------~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~--l  457 (504)
                              ......+++++++..++....+          . |.+||+.+++.+..+...   ..+.+++|+|||+.  +
T Consensus       240 ~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~---~~~~~~a~spDG~~~l~  316 (355)
T d2bbkh_         240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLY  316 (355)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEE
T ss_pred             ceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC---CCEEEEEEcCCCCeEEE
Confidence                    1233458899999887765421          3 899999999988877653   46889999999973  3


Q ss_pred             EEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEEeec
Q 010669          458 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       458 ~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      ++++.+  |+|||.    ++++.+.++.++  ...-..+.+...
T Consensus       317 v~~~~d~~i~v~D~----~tg~~~~~i~~~--G~~p~~i~~~d~  354 (355)
T d2bbkh_         317 ALSTGDKTLYIHDA----ESGEELRSVNQL--GHGPQVITTADM  354 (355)
T ss_dssp             EEETTTTEEEEEET----TTCCEEEEECCC--CSSCCEEECCCC
T ss_pred             EEECCCCEEEEEEC----CCCCEEEEEeCc--CCCccEEEeCCC
Confidence            444545  999998    788999999876  334455554443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.73  E-value=3.9e-16  Score=154.08  Aligned_cols=196  Identities=13%  Similarity=0.037  Sum_probs=143.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCC
Q 010669          279 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE  358 (504)
Q Consensus       279 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  358 (504)
                      ++++.+.||+|+|||+.++   +.+.++..| ..+..++|+|||+++++++.|++|++||+.+++...........+|..
T Consensus        34 ~~V~~~~dg~v~vwD~~t~---~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSK---KIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             EEEEETTTTEEEEEETTTC---SEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             EEEEEcCCCEEEEEECCCC---cEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            5678889999999999886   777888776 458999999999999999999999999999887544332111224445


Q ss_pred             CeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCceeeeeeCCC-----------CCeEEEEEcCCCcEEEEEeCCc--EEE
Q 010669          359 GYTSAAFHPDGLILGTG-TSEALVKIWDVKSQANVAKFDGHV-----------GAVTAISFSENGYYLATAAHDG--VKL  424 (504)
Q Consensus       359 ~v~~~~~~pdg~~l~~g-~~dg~I~iwd~~~~~~~~~~~~~~-----------~~i~~l~~s~~g~~l~s~~~d~--v~v  424 (504)
                      .+.+++|+|||++++++ ..++.+++||..++..+..+..|.           +....+.+++++..++....+.  +.+
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~  189 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  189 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            56677888999987554 578999999999998877665543           3445667777777776666553  666


Q ss_pred             EEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEcc
Q 010669          425 WDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFP  483 (504)
Q Consensus       425 wd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~  483 (504)
                      ++............ .....+..+.|+|++++++++..+   +.+|+.    ...+.+..+.
T Consensus       190 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~----~~~~~~~~~~  246 (426)
T d1hzua2         190 VNYKDIDNLTVTSI-GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDS----KDRRLSALVD  246 (426)
T ss_dssp             EECSSSSSCEEEEE-ECCSSEEEEEECTTSCEEEEEETTCSEEEEEET----TTTEEEEEEE
T ss_pred             EEeccccceeeEEe-ccCCccEeeeECCCCcEEEeeeecccceeeeec----ccccEEEEec
Confidence            66665543332211 125678999999999999998766   888887    4555554443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.70  E-value=5e-16  Score=147.52  Aligned_cols=220  Identities=9%  Similarity=0.001  Sum_probs=154.8

Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec-cCCcCeEEEEEccCCCEEE-EEeCCCeEEEEECCCCeEEEEe
Q 010669          271 VKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFV-TASLDNTWCFYDLSSGICLTQV  348 (504)
Q Consensus       271 l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~-s~s~dg~i~iwd~~~~~~~~~~  348 (504)
                      ++|++++++|++++.|++|.+||+.++   +.+.++. .|...+.+++|+|||++++ +++.++.|.+||+.+++.+..+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~---~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC---CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence            467899999999999999999999886   6677665 4566788999999999875 5567899999999999988777


Q ss_pred             ecCCC-CCCCCCeEEEEECCCCCEEEEEe------------CCCcEEEEEcCCCceeeeeeCC--CCCeEEEEEcCCCcE
Q 010669          349 SDAGT-DGRPEGYTSAAFHPDGLILGTGT------------SEALVKIWDVKSQANVAKFDGH--VGAVTAISFSENGYY  413 (504)
Q Consensus       349 ~~~~~-~~~~~~v~~~~~~pdg~~l~~g~------------~dg~I~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~g~~  413 (504)
                      ..... ..+...+..++|+|||+++++++            .++.+.+||..+++....+..+  ...+..+.+++++.+
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  158 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEE
Confidence            53211 11123456899999999988765            4678999999887655443322  234555566666655


Q ss_pred             EEEEeCCcEEEEEcCCCcceeeeecC------------------------------------------------------
Q 010669          414 LATAAHDGVKLWDLRKLKNFRSFESS------------------------------------------------------  439 (504)
Q Consensus       414 l~s~~~d~v~vwd~~~~~~~~~~~~~------------------------------------------------------  439 (504)
                      ++++  ..+.+||+.+++.+..+..+                                                      
T Consensus       159 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
T d1jmxb_         159 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  236 (346)
T ss_dssp             EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEeC--CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence            4432  22555555443332222110                                                      


Q ss_pred             ------------CCCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          440 ------------DSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       440 ------------~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                                  .+...+..+.+++++.+++....+ +.+||.    .+++.+..+..   ...+.+++|+|+|+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~----~~~~~~~~~~~---~~~~~~va~s~DG~~  305 (346)
T d1jmxb_         237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL----KQRKLIKAANL---DHTYYCVAFDKKGDK  305 (346)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEET----TTTEEEEEEEC---SSCCCEEEECSSSSC
T ss_pred             CCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEEC----CCCcEEEEEcC---CCCEEEEEEcCCCCE
Confidence                        112345667788888888877777 999998    67788887753   457999999999975

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.61  E-value=1.9e-13  Score=131.41  Aligned_cols=215  Identities=12%  Similarity=0.002  Sum_probs=150.5

Q ss_pred             EEEeccCCCEEEEEe----------CCCcEEEEcCCCCceEEEcccCccce-------eEEEEeeCCCEEEEEe--CCCc
Q 010669          228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGHSKKV-------TSVKFVTEGDLFLTGS--ADKT  288 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~h~~~v-------~~l~~s~~~~~l~s~s--~dg~  288 (504)
                      .++|+|||++|++++          .++.|.+||..+++.+..+..+....       ..+.|+++++.++...  .++.
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence            689999999998875          35789999999999988877665443       4578889888665543  4567


Q ss_pred             EEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCE-EEEEeCCCeEEEEECCCCeEEEEeecCCC--------------
Q 010669          289 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKY-FVTASLDNTWCFYDLSSGICLTQVSDAGT--------------  353 (504)
Q Consensus       289 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------------  353 (504)
                      +.+|+....   ...    .+.....++.++|+++. +++.+.|+.+.+||...+...........              
T Consensus       150 ~~~~~~~~~---~~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (373)
T d2madh_         150 VGLVVQGGS---SDD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             eEEeeccCC---eEE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC
Confidence            888887653   222    23344677888998874 46778899999999876554432211000              


Q ss_pred             ------------------------------CCC----------CCCeEEEEECCCCCEEE----------EEeCCCcEEE
Q 010669          354 ------------------------------DGR----------PEGYTSAAFHPDGLILG----------TGTSEALVKI  383 (504)
Q Consensus       354 ------------------------------~~~----------~~~v~~~~~~pdg~~l~----------~g~~dg~I~i  383 (504)
                                                    ...          ......+++++++..++          ....++.+.+
T Consensus       223 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~  302 (373)
T d2madh_         223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             CCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence                                          000          01122345556555443          4455678999


Q ss_pred             EEcCCCceeeeeeCCCCCeEEEEEcCCCcE--EEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          384 WDVKSQANVAKFDGHVGAVTAISFSENGYY--LATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       384 wd~~~~~~~~~~~~~~~~i~~l~~s~~g~~--l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      ||..+++.+..+. +...+..++|+|||+.  +++++.++ |++||+.+++.+.++..+  ......+++.+
T Consensus       303 ~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~--g~~P~~l~~~~  371 (373)
T d2madh_         303 VTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL--GSGPQVLSVMN  371 (373)
T ss_pred             EECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC--CCCCcEEEEec
Confidence            9999999888776 5567899999999984  45677777 999999999999998765  34566666654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=2e-14  Score=137.32  Aligned_cols=221  Identities=15%  Similarity=0.102  Sum_probs=150.6

Q ss_pred             EEEEeccCCCEEEEE----------eCCCcEEEEcCCCCceEEEcccCc-------cceeEEEEeeCCCEEEEEe--CCC
Q 010669          227 VSLDIHYSKDVIATG----------GVDTNAVLFDRPSGQIVTTLSGHS-------KKVTSVKFVTEGDLFLTGS--ADK  287 (504)
Q Consensus       227 ~~~~~s~~~~~l~sg----------~~dg~i~vwd~~~~~~~~~~~~h~-------~~v~~l~~s~~~~~l~s~s--~dg  287 (504)
                      ..++|||||++|++.          +.|+.|.+||..+++.+..+..+.       .....++|++++++++.++  .+.
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence            368999999988764          347899999999999887765332       2235689999999877764  456


Q ss_pred             cEEEEeCCCCCCcceeEEecc---------------------------------------------CCcCeEEEEEccCC
Q 010669          288 TVRVWQGSEDGNYDCKHTLKD---------------------------------------------HTAEVQAVTVHATN  322 (504)
Q Consensus       288 ~i~iwd~~~~~~~~~~~~~~~---------------------------------------------h~~~v~~l~~~p~~  322 (504)
                      .+.+|+..++.   ....+..                                             +...+....+.+++
T Consensus       130 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (355)
T d2bbkh_         130 AVGVVDLEGKA---FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA  206 (355)
T ss_dssp             EEEEEETTTTE---EEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred             eeeeeecCCCc---EeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCC
Confidence            78899877642   1111111                                             11112233455566


Q ss_pred             CEEEEEeCCCeEEEEECCCCeEEEEeecCC-------CCCCCCCeEEEEECCCCCEEEEEeCC----------CcEEEEE
Q 010669          323 KYFVTASLDNTWCFYDLSSGICLTQVSDAG-------TDGRPEGYTSAAFHPDGLILGTGTSE----------ALVKIWD  385 (504)
Q Consensus       323 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~pdg~~l~~g~~d----------g~I~iwd  385 (504)
                      ..++.++.++.+++|++..+..........       ..........+++++++..++....+          +.|.+||
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d  286 (355)
T d2bbkh_         207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  286 (355)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEe
Confidence            677888899999999998775432211000       00011234568899999988776543          3699999


Q ss_pred             cCCCceeeeeeCCCCCeEEEEEcCCCc--EEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCC
Q 010669          386 VKSQANVAKFDGHVGAVTAISFSENGY--YLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS  453 (504)
Q Consensus       386 ~~~~~~~~~~~~~~~~i~~l~~s~~g~--~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~  453 (504)
                      ..+++.+..+. +...+.+++|+|||+  ++++++.++ |++||+.+++.++++...  ......+.+.++
T Consensus       287 ~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~--G~~p~~i~~~d~  354 (355)
T d2bbkh_         287 AKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL--GHGPQVITTADM  354 (355)
T ss_dssp             TTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC--CSSCCEEECCCC
T ss_pred             CCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc--CCCccEEEeCCC
Confidence            99999888776 345688999999997  345566667 999999999999988754  334455555444

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.6e-16  Score=116.28  Aligned_cols=53  Identities=32%  Similarity=0.437  Sum_probs=49.7

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   53 (504)
                      |.|+||+++|.+||++|.+||+|||.+|++||..+++||+|+++|+.++|+|-
T Consensus        23 f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN   75 (98)
T d1wgma_          23 FLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN   75 (98)
T ss_dssp             TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred             hCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcch
Confidence            68999999999999998667799999999999999999999999999999765

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=2.6e-13  Score=130.60  Aligned_cols=251  Identities=9%  Similarity=-0.021  Sum_probs=167.4

Q ss_pred             EEEeccCCCEEEEEe----------CCCcEEEEcCCCCceEEEcccCcc-------ceeEEEEeeCCCEEEEEe-CCCcE
Q 010669          228 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGHSK-------KVTSVKFVTEGDLFLTGS-ADKTV  289 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~s~~~~~l~s~s-~dg~i  289 (504)
                      .++|+|||+.|++.+          .|+.|.+||..+++.+..+..+..       ....++|+|||++|++++ .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            588999999888754          467899999999998887754332       234689999999888776 57999


Q ss_pred             EEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeec-CCCCCCCCCeEEEEECCC
Q 010669          290 RVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD-AGTDGRPEGYTSAAFHPD  368 (504)
Q Consensus       290 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~pd  368 (504)
                      .+||+.+.   +....+..+.....   +......++..+.||.+.+|++........... .....+...+....+.++
T Consensus       149 ~~~d~~~~---~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T d1mdah_         149 AGLSVPGA---SDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             EEEEETTT---EEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             EEEECCCC---cEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC
Confidence            99999885   55555544433211   122345677778888888888765543322211 112233445667888888


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeee--eCC----------CCCeEEEEEcCCCcEEEEEeCC---------c-EEEEE
Q 010669          369 GLILGTGTSEALVKIWDVKSQANVAKF--DGH----------VGAVTAISFSENGYYLATAAHD---------G-VKLWD  426 (504)
Q Consensus       369 g~~l~~g~~dg~I~iwd~~~~~~~~~~--~~~----------~~~i~~l~~s~~g~~l~s~~~d---------~-v~vwd  426 (504)
                      +..+...  .+.++++++..+......  ..+          ......+++++++..++....+         . |.+||
T Consensus       223 g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D  300 (368)
T d1mdah_         223 GMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT  300 (368)
T ss_dssp             TEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred             cEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence            8766654  466777777655433221  111          1123457889988776654211         2 88999


Q ss_pred             cCCCcceeeeecCCCCCCeeEEEECCCCC-EEE-EEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEEEE
Q 010669          427 LRKLKNFRSFESSDSETPTNSVDFDHSGS-YLA-VASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFLFL  496 (504)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~v~~i~~~~~g~-~l~-~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~  496 (504)
                      ..+++.+..+...   ..+.+++|+|||+ +|+ ++..+  |+|||.    .+++.+.+++..   ..-+.|.+
T Consensus       301 ~~t~~~~~~~~~~---~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~----~tgk~~~~i~~g---~~P~~l~~  364 (368)
T d1mdah_         301 ASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDA----ASDQDQSSVELD---KGPESLSV  364 (368)
T ss_dssp             SSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEES----SSCEEEEECCCC---SCCCEEEC
T ss_pred             CCCCcEeEEecCC---CceeEEEECCCCCEEEEEEeCCCCeEEEEEC----CCCCEEEEEECC---CCCCEEEE
Confidence            9999988877653   5688999999997 444 44444  999998    778899999764   23455544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.48  E-value=2.7e-12  Score=127.63  Aligned_cols=145  Identities=12%  Similarity=0.110  Sum_probs=110.1

Q ss_pred             EEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcc-----cCccceeEEEEeeCCCEEEEEeC---------CCcEEEE
Q 010669          227 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-----GHSKKVTSVKFVTEGDLFLTGSA---------DKTVRVW  292 (504)
Q Consensus       227 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~s~~~~~l~s~s~---------dg~i~iw  292 (504)
                      ..+.|.++++++..  .++.+.+||+.+++....+.     .|...|.++.|||||++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35779999987764  57889999999998766444     45678999999999999888743         5778999


Q ss_pred             eCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC-------------CCCCC
Q 010669          293 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD-------------GRPEG  359 (504)
Q Consensus       293 d~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~  359 (504)
                      |+.++    ....+..|...+..+.|+|||+.|+.. .++.+.+|+..++............             .....
T Consensus        98 d~~~~----~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          98 DLNKR----QLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             ETTTT----EECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             ECCCC----cccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence            99884    345567888999999999999999986 5678999999988766544321110             01223


Q ss_pred             eEEEEECCCCCEEEEEeCC
Q 010669          360 YTSAAFHPDGLILGTGTSE  378 (504)
Q Consensus       360 v~~~~~~pdg~~l~~g~~d  378 (504)
                      ...+.|+|||+.|+....|
T Consensus       173 ~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         173 YSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             SBCEEECTTSSEEEEEEEE
T ss_pred             ccccEECCCCCccceeEec
Confidence            4568899999999987543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.46  E-value=3.8e-12  Score=122.74  Aligned_cols=253  Identities=11%  Similarity=0.067  Sum_probs=168.8

Q ss_pred             EEEEeCCCcEEEEcCCCCceEEEccc------------------------------CccceeEEEEeeCCCEEEEE-eCC
Q 010669          238 IATGGVDTNAVLFDRPSGQIVTTLSG------------------------------HSKKVTSVKFVTEGDLFLTG-SAD  286 (504)
Q Consensus       238 l~sg~~dg~i~vwd~~~~~~~~~~~~------------------------------h~~~v~~l~~s~~~~~l~s~-s~d  286 (504)
                      +++|+.+|.|.||++.+++.+.++.-                              |........++|||++|++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            67788999999999999988877531                              22223444457899988655 478


Q ss_pred             CcEEEEeCCCCCCcceeEEec-cCCcCeEEEEEccCCC--EEEEEeCCC-----------------eEEEEECCCCeEEE
Q 010669          287 KTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNK--YFVTASLDN-----------------TWCFYDLSSGICLT  346 (504)
Q Consensus       287 g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~--~l~s~s~dg-----------------~i~iwd~~~~~~~~  346 (504)
                      +.|.++|+.+.   ++...+. .+...+..++|+|+|+  |++..+.+.                 .+..+|..+.+...
T Consensus        94 ~rVavIDl~t~---k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          94 TRVARIRLDIM---KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TEEEEEETTTT---EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CEEEEEECCCC---cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            89999999885   4444443 4567899999999998  454444332                 23557888877776


Q ss_pred             EeecCCCCCCCCCeEEEEECCCCCEEEEEeCC-----------------------------------------CcEEEEE
Q 010669          347 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----------------------------------------ALVKIWD  385 (504)
Q Consensus       347 ~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d-----------------------------------------g~I~iwd  385 (504)
                      ++...      .....+.|+|||+++++.+.+                                         +.+.+++
T Consensus       171 qI~v~------~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~  244 (441)
T d1qnia2         171 QVIVD------GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDG  244 (441)
T ss_dssp             EEEES------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred             EEecC------CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEc
Confidence            66532      346789999999998887643                                         2344444


Q ss_pred             cCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeC-Cc-EEEEEcCCCcce--------eeeecC-CCCCCeeEEEECCCC
Q 010669          386 VKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNF--------RSFESS-DSETPTNSVDFDHSG  454 (504)
Q Consensus       386 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~-d~-v~vwd~~~~~~~--------~~~~~~-~~~~~v~~i~~~~~g  454 (504)
                      ....+.+..+.... ....+.++|||+++++++. ++ |.+||+.+....        ..+... ...-.....+|+++|
T Consensus       245 ~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g  323 (441)
T d1qnia2         245 RGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG  323 (441)
T ss_dssp             SSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred             ccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc
Confidence            44444555555443 3578999999998877655 45 999998764321        111111 112334567899999


Q ss_pred             CEEEEEeCc--EEEEEeecc------CccceeEEEc-----cCCCCCCceeEEEEeecCcc
Q 010669          455 SYLAVASAD--IRVYQVASV------KADWNCIKTF-----PDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       455 ~~l~~~~~d--i~vw~~~~~------~~~~~~i~~~-----~~h~~~~~v~~l~~~~~g~~  502 (504)
                      ..+.+...|  |..|++...      .+.+..+..+     .+|  ...+.+..+.|+|+-
T Consensus       324 ~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH--~~~~~~~t~~pdGk~  382 (441)
T d1qnia2         324 NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGH--NHASLTESRDADGKW  382 (441)
T ss_dssp             EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE--EEETTTTSTTCCCCE
T ss_pred             eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCC--CccccccccCCCCcE
Confidence            877777777  999998421      2233445554     466  666777788888864

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=9.6e-14  Score=100.89  Aligned_cols=52  Identities=35%  Similarity=0.600  Sum_probs=47.7

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~   53 (504)
                      |.|+||+++|++||+++ +||+|||.+|.+|+.+++ +||+|+++|+.++|++-
T Consensus         8 l~CpIc~~l~~dPv~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN   60 (80)
T d2c2la2           8 LCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN   60 (80)
T ss_dssp             TBCTTTCSBCSSEEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred             ccCcCcCchhhhhcccC-CcCeecHHHHHHHHhcCCccCCCccccccccccccH
Confidence            67999999999999996 999999999999999776 69999999999988764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=3.4e-12  Score=122.62  Aligned_cols=257  Identities=8%  Similarity=-0.088  Sum_probs=165.0

Q ss_pred             CCeEEEEeccCCCEE--E-EEeCCC--cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe----------CCCc
Q 010669          224 PGIVSLDIHYSKDVI--A-TGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKT  288 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l--~-sg~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s----------~dg~  288 (504)
                      ++...++..++++..  + ....+|  .+.+||..+++.+..+..+...  .++|+|||+.|++.+          .|+.
T Consensus        20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCe
Confidence            334445567777743  2 233344  4777799999999888766654  589999999888754          4778


Q ss_pred             EEEEeCCCCCCcceeEEeccCC-------cCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCCCCCCCCe
Q 010669          289 VRVWQGSEDGNYDCKHTLKDHT-------AEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGY  360 (504)
Q Consensus       289 i~iwd~~~~~~~~~~~~~~~h~-------~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  360 (504)
                      |.+||..+.   +....+..+.       .....++|+|||++++++. .++.+.+||+.+++....+.....    ..+
T Consensus        98 v~v~D~~t~---~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~----~~~  170 (368)
T d1mdah_          98 VEVFDPVTF---LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC----FHI  170 (368)
T ss_dssp             EEEECTTTC---CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC----CCC
T ss_pred             EEEEECCCC---cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc----ceE
Confidence            999999876   4444443322       1234689999999998876 578999999999998887753211    011


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcCCCceeee------eeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCccee
Q 010669          361 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK------FDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR  434 (504)
Q Consensus       361 ~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~------~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~  434 (504)
                          +......++..+.||.+.+|++........      +..+...+..+.+.+++..+.+.+ +.++++++.......
T Consensus       171 ----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~v~~~~~~~~~~~~  245 (368)
T d1mdah_         171 ----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATM  245 (368)
T ss_dssp             ----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEE
T ss_pred             ----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecC-CCEEEEeecCCceEE
Confidence                112334556667777777777765433221      223445566778888877665432 226666665544322


Q ss_pred             eeecCC----------CCCCeeEEEECCCCCEEEEEeC-----------cEEEEEeeccCccceeEEEccCCCCCCceeE
Q 010669          435 SFESSD----------SETPTNSVDFDHSGSYLAVASA-----------DIRVYQVASVKADWNCIKTFPDLSGTGAASF  493 (504)
Q Consensus       435 ~~~~~~----------~~~~v~~i~~~~~g~~l~~~~~-----------di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~  493 (504)
                      ......          .......+++++++..+++...           .+.+||.    ++++.+..+..   ...+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~----~t~~~~~~~~~---~~~~~~  318 (368)
T d1mdah_         246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA----SVGQTSGPISN---GHDSDA  318 (368)
T ss_dssp             ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES----SSCCEEECCEE---EEEECE
T ss_pred             EeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC----CCCcEeEEecC---CCceeE
Confidence            111110          0112345888999988776521           1667776    67788888764   457899


Q ss_pred             EEEeecCc
Q 010669          494 LFLFVLGQ  501 (504)
Q Consensus       494 l~~~~~g~  501 (504)
                      ++|+|+|+
T Consensus       319 ~a~spDG~  326 (368)
T d1mdah_         319 IIAAQDGA  326 (368)
T ss_dssp             EEECCSSS
T ss_pred             EEECCCCC
Confidence            99999996

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=1.1e-09  Score=100.34  Aligned_cols=236  Identities=14%  Similarity=0.193  Sum_probs=167.3

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc------CccceeEEEEeeCC-CEEEE-EeCCCcEEEEeCCC
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG------HSKKVTSVKFVTEG-DLFLT-GSADKTVRVWQGSE  296 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~------h~~~v~~l~~s~~~-~~l~s-~s~dg~i~iwd~~~  296 (504)
                      .-..++++++|+++++-..+..|++||.. |+.+..+..      .......+++..+. ..+++ .+.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            35789999999988887788899999965 777666532      11234556665543 34443 34455777777543


Q ss_pred             CCCcceeEEec-cCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          297 DGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       297 ~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                          .....+. ........+++.+++.++++....+.+.+++.. ++.+..+..   ..+......+++.++|+++++.
T Consensus       103 ----~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~---~~~~~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_         103 ----QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC---SKHLEFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             ----CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---TTTCSSEEEEEECSSSEEEEEE
T ss_pred             ----cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccc---cccccccceeeeccceeEEeee
Confidence                3334432 334567889999999988888888889888865 445555532   2445678899999999999999


Q ss_pred             eCCCcEEEEEcCCCceeeeee--CCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEEC
Q 010669          376 TSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFD  451 (504)
Q Consensus       376 ~~dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~  451 (504)
                      ...+.|++||. +++.+..+.  +.......|++.++|+++++-..+ . |.+|+ .+++.+..+...........++++
T Consensus       175 ~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~  252 (279)
T d1q7fa_         175 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALM  252 (279)
T ss_dssp             GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEE
T ss_pred             ccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEe
Confidence            99999999996 566666663  344568899999999987775544 4 89998 457777777654434568899999


Q ss_pred             CCCCEEEEEeCc-EEEEEeec
Q 010669          452 HSGSYLAVASAD-IRVYQVAS  471 (504)
Q Consensus       452 ~~g~~l~~~~~d-i~vw~~~~  471 (504)
                      ++|.++++..+. |++|.+..
T Consensus       253 ~dG~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         253 DDGSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             TTTEEEEEETTTEEEEEECSC
T ss_pred             CCCcEEEEeCCCeEEEEEeee
Confidence            999876655444 99999843

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.35  E-value=3.6e-13  Score=97.34  Aligned_cols=52  Identities=27%  Similarity=0.521  Sum_probs=47.6

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCCCCCCCccccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~   53 (504)
                      |.|+|++++|++||+++ +||+|||.+|++|++.++ +||.|+.+|+.++|++-
T Consensus         9 l~CpIc~~~m~dPV~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN   61 (78)
T d1t1ha_           9 FRCPISLELMKDPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN   61 (78)
T ss_dssp             SSCTTTSCCCSSEEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred             CCCcCcCchhhCceEcc-CCCcchHHHHHHHHHHCCCCCCcccccCCcccccch
Confidence            57999999999999996 999999999999999775 59999999999998763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=1.3e-09  Score=98.86  Aligned_cols=234  Identities=14%  Similarity=0.070  Sum_probs=152.6

Q ss_pred             CeEEEEeccCCCEEEEE-eCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCccee
Q 010669          225 GIVSLDIHYSKDVIATG-GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK  303 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  303 (504)
                      .-..++++++|++.++. +..+.+..++............-......++++++++++++....+.+++++-...   ...
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~---~~~   91 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN---QTV   91 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC---CEE
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc---eee
Confidence            45789999999966654 45677777776544332222222234678899999998877777777776654332   222


Q ss_pred             EEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 010669          304 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI  383 (504)
Q Consensus       304 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~i  383 (504)
                      ... .......++++.++++++++-..+..+..++...........     ........++++++|+++++...++.|..
T Consensus        92 ~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~~i~~~~~g~~~v~~~~~~~i~~  165 (260)
T d1rwia_          92 LPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-----TGLNDPDGVAVDNSGNVYVTDTDNNRVVK  165 (260)
T ss_dssp             CCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC-----CSCCSCCEEEECTTCCEEEEEGGGTEEEE
T ss_pred             eee-eeeeecccccccccceeEeeccccccccccccccceeeeeee-----cccCCcceeeecCCCCEeeeccccccccc
Confidence            222 223557899999999988877777778888776544322211     11234578999999999888888899999


Q ss_pred             EEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeC
Q 010669          384 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA  462 (504)
Q Consensus       384 wd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~  462 (504)
                      +|...................|++.++|+++++....+ |..++..... ...+.. ........|+++++|.++++-..
T Consensus       166 ~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~-~~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         166 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPF-TGLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCC-CSCCCEEEEEECTTCCEEEEEGG
T ss_pred             cccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEcc-CCCCCeEEEEEeCCCCEEEEECC
Confidence            99865544333233445678999999998877777666 8878765432 222221 11346789999999987666454


Q ss_pred             cEEEEEe
Q 010669          463 DIRVYQV  469 (504)
Q Consensus       463 di~vw~~  469 (504)
                      +-+|+.+
T Consensus       244 ~~rI~~i  250 (260)
T d1rwia_         244 NDRVVKL  250 (260)
T ss_dssp             GTEEEEE
T ss_pred             CCEEEEE
Confidence            4566655

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.31  E-value=1.1e-09  Score=104.64  Aligned_cols=257  Identities=12%  Similarity=0.114  Sum_probs=150.8

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCCcEEEEcCCCC-ceEEEc-ccCccceeEEEEeeCCCEE--EEEe-CCCcEEEEeCCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-QIVTTL-SGHSKKVTSVKFVTEGDLF--LTGS-ADKTVRVWQGSED  297 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~-~~h~~~v~~l~~s~~~~~l--~s~s-~dg~i~iwd~~~~  297 (504)
                      ..++.-|+|++++++|.++.. +.+..|.+... ...... .........+.++++++.+  +++. ..++|..+.+...
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            334567999999999888764 56777766532 222211 1122335567778888743  3332 2455555543221


Q ss_pred             CCcceeE-------------E-eccCCcCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCCCCCCeEE
Q 010669          298 GNYDCKH-------------T-LKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       298 ~~~~~~~-------------~-~~~h~~~v~~l~~~p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  362 (504)
                      +......             . -......+.++.|+|+|+++++++. ...|.+|+......+.................
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~  197 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEE
Confidence            1100000             0 0112234789999999998888865 34788887654322221111001122356889


Q ss_pred             EEECCCCCEEEEEe-CCCcEEEEEcCCCceeeee--e-----------------CCCCCeEEEEEcCCCcEEEEEeC--C
Q 010669          363 AAFHPDGLILGTGT-SEALVKIWDVKSQANVAKF--D-----------------GHVGAVTAISFSENGYYLATAAH--D  420 (504)
Q Consensus       363 ~~~~pdg~~l~~g~-~dg~I~iwd~~~~~~~~~~--~-----------------~~~~~i~~l~~s~~g~~l~s~~~--d  420 (504)
                      ++|+|+|+++.+.. .++.|.+||+..++.....  .                 .+......+.++|+|++|+++..  +
T Consensus       198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~  277 (365)
T d1jofa_         198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCC
Confidence            99999999876555 5789999998765432111  0                 11123567899999999988742  2


Q ss_pred             ----c-EEEEEcCCCcceeee----ecCCCCCCeeEEEECC-CCCEEEEEeCc---EEEEEeeccCccceeEEEc
Q 010669          421 ----G-VKLWDLRKLKNFRSF----ESSDSETPTNSVDFDH-SGSYLAVASAD---IRVYQVASVKADWNCIKTF  482 (504)
Q Consensus       421 ----~-v~vwd~~~~~~~~~~----~~~~~~~~v~~i~~~~-~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~  482 (504)
                          . |..|++.....+...    ...........++++| +|++|++++.+   |.+|+++.  +....+..+
T Consensus       278 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~--~~l~~~~~~  350 (365)
T d1jofa_         278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD--EFLHRVARV  350 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET--TEEEEEEEE
T ss_pred             CccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC--CcCcEEEEE
Confidence                2 777777654322211    1122234567899998 89999988655   99999854  334444444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.31  E-value=5.7e-11  Score=114.42  Aligned_cols=232  Identities=11%  Similarity=0.107  Sum_probs=151.2

Q ss_pred             cCCCCCeEEEEeccCCCEEEEE-eCCCcEEEEcCCCCceEEEcc-cCccceeEEEEeeCCC--EEEEEeCCC--------
Q 010669          220 KTSKPGIVSLDIHYSKDVIATG-GVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGD--LFLTGSADK--------  287 (504)
Q Consensus       220 ~~~~~~I~~~~~s~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~--~l~s~s~dg--------  287 (504)
                      ..|.+......++|||++|++. ..++.|.++|+.+++....+. .+...+..++|+|+|+  +++..+.+.        
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            3456667788889999988655 578899999999998877664 3567799999999998  444444332        


Q ss_pred             ---------cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC---------------------------
Q 010669          288 ---------TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---------------------------  331 (504)
Q Consensus       288 ---------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d---------------------------  331 (504)
                               .+..+|..+.   .....+.. .+....+.|+|+|+++++++.+                           
T Consensus       148 ~~~~~~~~~~~~~iD~~t~---~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~  223 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETM---DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIA  223 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTC---SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHH
T ss_pred             ccccccccceEEeecCccc---eeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceE
Confidence                     1234565543   33333332 2457789999999998887654                           


Q ss_pred             --------------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE-EEeCCCcEEEEEcCCCcee----
Q 010669          332 --------------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSEALVKIWDVKSQANV----  392 (504)
Q Consensus       332 --------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~-~g~~dg~I~iwd~~~~~~~----  392 (504)
                                    +.+.+++......+..+..      ......+.++|||++++ ++..+++|.+||+.+....    
T Consensus       224 ~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPv------gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~  297 (441)
T d1qnia2         224 AAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPV------PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK  297 (441)
T ss_dssp             HHHHTTCCBCCTTCCCCEEECSSSCSSEEEECC------BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS
T ss_pred             EEecCCCEEEeCCCCcEEEEcccCCceEEEEeC------CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc
Confidence                          2333343333333444321      12356799999999765 5678999999998653211    


Q ss_pred             ----eeeeCC---CCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCC----------cceeeeecC---CCCCCeeEEEEC
Q 010669          393 ----AKFDGH---VGAVTAISFSENGYYLATAAHDG-VKLWDLRKL----------KNFRSFESS---DSETPTNSVDFD  451 (504)
Q Consensus       393 ----~~~~~~---~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~----------~~~~~~~~~---~~~~~v~~i~~~  451 (504)
                          ..+.++   .-.....+|+++|+.+.+...|. |..|++...          ..+..+..+   .|...+.+.+++
T Consensus       298 ~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~  377 (441)
T d1qnia2         298 IELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRD  377 (441)
T ss_dssp             SCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTT
T ss_pred             CCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccC
Confidence                111111   11345568999999888888888 999997421          122233222   123345556789


Q ss_pred             CCCCEEEEEe
Q 010669          452 HSGSYLAVAS  461 (504)
Q Consensus       452 ~~g~~l~~~~  461 (504)
                      |||+||++++
T Consensus       378 pdGk~l~s~~  387 (441)
T d1qnia2         378 ADGKWLVVLS  387 (441)
T ss_dssp             CCCCEEEEEE
T ss_pred             CCCcEEEecC
Confidence            9999999993

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.30  E-value=1.7e-09  Score=100.30  Aligned_cols=234  Identities=12%  Similarity=0.064  Sum_probs=158.7

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeE
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  304 (504)
                      .+..++++|||+++++...+++|..|+.. ++. ..+......+.+++|+++|+++++...++.+..|+...........
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            47789999999999999999999999865 332 3344456779999999999999988888888888765432111111


Q ss_pred             EeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-----CCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 010669          305 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA-----GTDGRPEGYTSAAFHPDGLILGTGTSEA  379 (504)
Q Consensus       305 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~pdg~~l~~g~~dg  379 (504)
                      ...........+.+.++++++++.+.++.+..+|...+.........     ...........+.++. +.++++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence            11234456889999999999999888999999999887654433211     0111223445666654 34566667888


Q ss_pred             cEEEEEcCCCceeeee--eCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEE---CCC
Q 010669          380 LVKIWDVKSQANVAKF--DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF---DHS  453 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~---~~~  453 (504)
                      .|..++..........  .........++|+++|.++++...++ |..|+... +..............++++|   .+|
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~~~~~~~pt~vafg~~~~D  264 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQAEQGVIGSTAVAFGQTEGD  264 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECGGGTCTTEEEEEECCSTTT
T ss_pred             eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEecCCCCCCceEEEEcCCCCC
Confidence            9998988654322211  11234567899999999877776666 88887753 33222322222456889999   678


Q ss_pred             CCEEEEEeC
Q 010669          454 GSYLAVASA  462 (504)
Q Consensus       454 g~~l~~~~~  462 (504)
                      ++.|++++.
T Consensus       265 ~~~Lyvtt~  273 (302)
T d2p4oa1         265 CTAIYVVTN  273 (302)
T ss_dssp             TTEEEEEEC
T ss_pred             CCEEEEECC
Confidence            888876653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.23  E-value=6.5e-11  Score=117.40  Aligned_cols=153  Identities=13%  Similarity=0.166  Sum_probs=118.7

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC---------CCcEEEE
Q 010669          314 QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---------EALVKIW  384 (504)
Q Consensus       314 ~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~---------dg~I~iw  384 (504)
                      ..+.|.+++.++..  .|+.+.+||+.+++....+.......+...|.++.|+|||++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35778988887764  578899999999998776665555566778999999999999998753         5678999


Q ss_pred             EcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCcEEEEEcCCCcceeeeecCC----------------CCCCeeEE
Q 010669          385 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSD----------------SETPTNSV  448 (504)
Q Consensus       385 d~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~v~vwd~~~~~~~~~~~~~~----------------~~~~v~~i  448 (504)
                      |+.+++ +..+..+...+..+.|||||.+|+....+.+++|+..++...+......                .......+
T Consensus        98 d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~  176 (470)
T d2bgra1          98 DLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (470)
T ss_dssp             ETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             ECCCCc-ccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence            998876 4557778889999999999999999877679999999887654332211                11234568


Q ss_pred             EECCCCCEEEEEeCc---EEEEEe
Q 010669          449 DFDHSGSYLAVASAD---IRVYQV  469 (504)
Q Consensus       449 ~~~~~g~~l~~~~~d---i~vw~~  469 (504)
                      .|+|||++|+....|   +..|.+
T Consensus       177 ~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         177 WWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             EECTTSSEEEEEEEECTTCCEEEE
T ss_pred             EECCCCCccceeEecCCcCceEEE
Confidence            899999999998765   555554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.22  E-value=1.5e-08  Score=94.20  Aligned_cols=234  Identities=11%  Similarity=0.112  Sum_probs=153.2

Q ss_pred             CCeEEEEeccCCCEEEEEeC-------CCcEEEEcCCCCceEEEccc----CccceeEEEEeeCCCEEEEEeCCCcEEEE
Q 010669          224 PGIVSLDIHYSKDVIATGGV-------DTNAVLFDRPSGQIVTTLSG----HSKKVTSVKFVTEGDLFLTGSADKTVRVW  292 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~-------dg~i~vwd~~~~~~~~~~~~----h~~~v~~l~~s~~~~~l~s~s~dg~i~iw  292 (504)
                      .....++|+++|+++++...       +|.|..||..++........    ..+....++|.++++.++++...+.|..+
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34567899999998776432       46799999887765433321    12335789999999988888777778888


Q ss_pred             eCCCCCCcceeEEec-cCC----cCeEEEEEccCCCEEEEEeC---------------CCeEEEEECCCCeEEEEeecCC
Q 010669          293 QGSEDGNYDCKHTLK-DHT----AEVQAVTVHATNKYFVTASL---------------DNTWCFYDLSSGICLTQVSDAG  352 (504)
Q Consensus       293 d~~~~~~~~~~~~~~-~h~----~~v~~l~~~p~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~  352 (504)
                      +....    ....+. ...    ...+.+.+.++|++.++-..               +|.|..++... +.......  
T Consensus        98 ~~~g~----~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~--  170 (314)
T d1pjxa_          98 QTDGT----FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTA--  170 (314)
T ss_dssp             ETTSC----EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEE--
T ss_pred             eCCCc----EEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCC--
Confidence            87653    111111 111    13578999999998777432               23455555432 22222211  


Q ss_pred             CCCCCCCeEEEEECCCCC-----EEEEEeCCCcEEEEEcCCCceee------eeeC-CCCCeEEEEEcCCCcEEEEEeCC
Q 010669          353 TDGRPEGYTSAAFHPDGL-----ILGTGTSEALVKIWDVKSQANVA------KFDG-HVGAVTAISFSENGYYLATAAHD  420 (504)
Q Consensus       353 ~~~~~~~v~~~~~~pdg~-----~l~~g~~dg~I~iwd~~~~~~~~------~~~~-~~~~i~~l~~s~~g~~l~s~~~d  420 (504)
                          -...+.++|+|++.     ++++-+..+.|..||+.....+.      .+.+ +......+++..+|++.++....
T Consensus       171 ----~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~  246 (314)
T d1pjxa_         171 ----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             ----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             ----cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCC
Confidence                12346789988764     55556778899999876432221      2222 22346789999999987776666


Q ss_pred             c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEee
Q 010669          421 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVA  470 (504)
Q Consensus       421 ~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~  470 (504)
                      + |.+||...+.....+..+  ....++++|.|+++.|++...+ .+||.++
T Consensus       247 g~I~~~dp~~g~~~~~i~~p--~~~~t~~afg~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         247 SHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEEECC--CCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            6 999999887776666654  3568899999999877666554 7777764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.19  E-value=6.4e-08  Score=90.14  Aligned_cols=237  Identities=10%  Similarity=0.118  Sum_probs=156.0

Q ss_pred             CeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC----CcEEEEeCCCCCCc
Q 010669          225 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD----KTVRVWQGSEDGNY  300 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d----g~i~iwd~~~~~~~  300 (504)
                      .+..++|+++|++.++-...+.|+.|+..+++....+.........++++++|+++++...+    +.+...+....   
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~---  117 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD---  117 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC---
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc---
Confidence            45689999999988887789999999988776666655556678999999999877765432    23444444432   


Q ss_pred             ceeEEec--cCCcCeEEEEEccCCCEEEEEeC------CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE
Q 010669          301 DCKHTLK--DHTAEVQAVTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL  372 (504)
Q Consensus       301 ~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l  372 (504)
                      .......  .-......+.+.++|++.++...      .+.+..++...+........      -...+.++|+||++.|
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~------~~~pnGia~s~dg~~l  191 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN------ISVANGIALSTDEKVL  191 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE------ESSEEEEEECTTSSEE
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeec------cceeeeeeeccccceE
Confidence            1111111  11235788999999987766432      23466666554432222211      1245789999999865


Q ss_pred             -EEEeCCCcEEEEEcCCC-ceeee-------eeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCC--
Q 010669          373 -GTGTSEALVKIWDVKSQ-ANVAK-------FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD--  440 (504)
Q Consensus       373 -~~g~~dg~I~iwd~~~~-~~~~~-------~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~--  440 (504)
                       ++-+..+.|+.||+... .....       ..........+++..+|++.++...++ |.+||. .++.+..+..+.  
T Consensus       192 yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~  270 (319)
T d2dg1a1         192 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD  270 (319)
T ss_dssp             EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGG
T ss_pred             EEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcC
Confidence             45566789999998642 21111       111123467899999999888777777 999995 688888776542  


Q ss_pred             --CCCCeeEEEECCCCCEEEEEeCc------EEEEEeec
Q 010669          441 --SETPTNSVDFDHSGSYLAVASAD------IRVYQVAS  471 (504)
Q Consensus       441 --~~~~v~~i~~~~~g~~l~~~~~d------i~vw~~~~  471 (504)
                        +...+++++|.+++..+++...+      ..||.++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         271 EGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             GTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             CCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence              13357899999988777665443      67777643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=4.4e-08  Score=88.51  Aligned_cols=230  Identities=12%  Similarity=0.114  Sum_probs=140.5

Q ss_pred             cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCC---cEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC
Q 010669          246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK---TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN  322 (504)
Q Consensus       246 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  322 (504)
                      .|.|.|...+.. ..+..+...+..-+|||||+.|+......   .+.+.+....    ....+..+.+......|+|+|
T Consensus        20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~spdg   94 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG----AVRQVASFPRHNGAPAFSPDG   94 (269)
T ss_dssp             EEEEEETTSCSC-EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC----CEEEEECCSSCEEEEEECTTS
T ss_pred             EEEEEcCCCCCc-EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC----ceeEEeeeecccccceecCCC
Confidence            477777654333 34444567788999999999988654332   3555555543    333445677888999999999


Q ss_pred             CEEEEEeC-CCe--EEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE-EeCCCc--EEEEEcCCCceeeeee
Q 010669          323 KYFVTASL-DNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT-GTSEAL--VKIWDVKSQANVAKFD  396 (504)
Q Consensus       323 ~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~-g~~dg~--I~iwd~~~~~~~~~~~  396 (504)
                      ..++.... ++.  +..+...........      ..........+++++..+.. ...+|.  |.++++..+.. ....
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~  167 (269)
T d2hqsa1          95 SKLAFALSKTGSLNLYVMDLASGQIRQVT------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRIT  167 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEECC------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECC
T ss_pred             CeeeEeeecCCccceeecccccccceeee------eccccccccccccccccceecccccCCceEeeeecccccc-eeee
Confidence            98887654 322  333333333222222      22234456677777665544 444554  55556555433 2333


Q ss_pred             CCCCCeEEEEEcCCCcEEEEEeCCc----EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-----EEEE
Q 010669          397 GHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVY  467 (504)
Q Consensus       397 ~~~~~i~~l~~s~~g~~l~s~~~d~----v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-----i~vw  467 (504)
                      .+........|+|+|..++..+.++    +.+.|...+.. ... ..  ........|+|||++|+..+..     +.++
T Consensus       168 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~-~~--~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~  243 (269)
T d2hqsa1         168 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL-SS--TFLDETPSLAPNGTMVIYSSSQGMGSVLNLV  243 (269)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EEC-CC--SSSCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             cccccccccccccccceeEEEeecCCceeeeEeecccccc-eEe-ec--CccccceEECCCCCEEEEEEcCCCCcEEEEE
Confidence            4556777889999999988876653    55556554433 222 22  3456788999999998866543     6666


Q ss_pred             EeeccCccceeEEEccCCCCCCceeEEEEee
Q 010669          468 QVASVKADWNCIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       468 ~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      ++     .+.....+...  .+.+...+++|
T Consensus       244 ~~-----dg~~~~~lt~~--~g~~~~p~WSP  267 (269)
T d2hqsa1         244 ST-----DGRFKARLPAT--DGQVKFPAWSP  267 (269)
T ss_dssp             ET-----TSCCEEECCCS--SSEEEEEEECC
T ss_pred             EC-----CCCCEEEEeCC--CCcEEeEEeCC
Confidence            75     23444556554  56677778877

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.11  E-value=9.6e-09  Score=95.11  Aligned_cols=232  Identities=9%  Similarity=0.040  Sum_probs=146.0

Q ss_pred             ceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEE
Q 010669          256 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC  335 (504)
Q Consensus       256 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~  335 (504)
                      +.+..+... ..+..++++|||+++++...+++|..|+....     ...+......+.+++|.++|+++++...++.+.
T Consensus        19 ~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-----~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~   92 (302)
T d2p4oa1          19 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-----QQIHATVEGKVSGLAFTSNGDLVATGWNADSIP   92 (302)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-----EEEEEECSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             cEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-----EEEEEcCCCCcceEEEcCCCCeEEEecCCceEE
Confidence            444445422 25788999999999999999999988886542     223344567799999999999999888888888


Q ss_pred             EEECCCCeE-EEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee----------CCCCCeEE
Q 010669          336 FYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD----------GHVGAVTA  404 (504)
Q Consensus       336 iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~----------~~~~~i~~  404 (504)
                      .|+...... ...+...   ........+++.++|+++++.+.++.+..+|...+.......          ........
T Consensus        93 ~~~~~~~~~~~~~~~~~---~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1          93 VVSLVKSDGTVETLLTL---PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             EEEEECTTSCEEEEEEC---TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             EEEecccccceeecccc---CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence            887654321 1122111   223457899999999999998889999999987764332221          11234566


Q ss_pred             EEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccce--eEEE
Q 010669          405 ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN--CIKT  481 (504)
Q Consensus       405 l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~--~i~~  481 (504)
                      +.++. +.++++.+..+ |..++.....................++|+++|++.++...+-+|+.+.   ..++  .+..
T Consensus       170 i~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~---p~G~~~~~~~  245 (302)
T d2p4oa1         170 LKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA---PDRSTTIIAQ  245 (302)
T ss_dssp             EEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC---TTCCEEEEEC
T ss_pred             ccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEEC---CCCCEEEEEe
Confidence            77753 23334444445 8888876543322221111123467799999999777665554455442   2233  3333


Q ss_pred             ccCCCCCCceeEEEE---eecCcc
Q 010669          482 FPDLSGTGAASFLFL---FVLGQT  502 (504)
Q Consensus       482 ~~~h~~~~~v~~l~~---~~~g~~  502 (504)
                      ....  ....++++|   .+|+++
T Consensus       246 ~~~~--~~~pt~vafg~~~~D~~~  267 (302)
T d2p4oa1         246 AEQG--VIGSTAVAFGQTEGDCTA  267 (302)
T ss_dssp             GGGT--CTTEEEEEECCSTTTTTE
T ss_pred             cCCC--CCCceEEEEcCCCCCCCE
Confidence            3322  456788888   455543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=8.2e-08  Score=86.66  Aligned_cols=216  Identities=8%  Similarity=0.051  Sum_probs=134.0

Q ss_pred             CCCeEEEEeccCCCEEEEEeCCC---cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC-CCcEEEEeCCCCC
Q 010669          223 KPGIVSLDIHYSKDVIATGGVDT---NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSEDG  298 (504)
Q Consensus       223 ~~~I~~~~~s~~~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg~i~iwd~~~~~  298 (504)
                      ...+.+-+|||||+.||......   .+.+.+...+.. ..+..+........|+|+|..++.... ++...++......
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~  116 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS  116 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred             CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeeccccc
Confidence            45678899999999998765433   466667665554 344456778899999999998776543 3333333322211


Q ss_pred             CcceeEEeccCCcCeEEEEEccCCCEEEEE-eCCC--eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE
Q 010669          299 NYDCKHTLKDHTAEVQAVTVHATNKYFVTA-SLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       299 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~-s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                        .................+++++..++.. ..+|  .|.+.++..+......      ..........|+|+++.++..
T Consensus       117 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~spdg~~~~~~  188 (269)
T d2hqsa1         117 --GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT------WEGSQNQDADVSSDGKFMVMV  188 (269)
T ss_dssp             --CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC------CSSSEEEEEEECTTSSEEEEE
T ss_pred             --ccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeee------cccccccccccccccceeEEE
Confidence              1222222334445556677777655544 4454  4566666665433322      233567788999999988876


Q ss_pred             eCCC-c--EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcceeeeecCCCCCCeeEE
Q 010669          376 TSEA-L--VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSV  448 (504)
Q Consensus       376 ~~dg-~--I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~~~~~~~~~~~~~v~~i  448 (504)
                      +.++ .  |.++|...+..  ....+........|+|||++|+..+..   . |+++++..+.. ..+...  ...+...
T Consensus       189 ~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~--~g~~~~p  263 (269)
T d2hqsa1         189 SSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPAT--DGQVKFP  263 (269)
T ss_dssp             EECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCS--SSEEEEE
T ss_pred             eecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCC--CCcEEeE
Confidence            6543 4  44445444432  333355567788999999988765533   2 89999986654 334333  4567888


Q ss_pred             EECC
Q 010669          449 DFDH  452 (504)
Q Consensus       449 ~~~~  452 (504)
                      +|+|
T Consensus       264 ~WSP  267 (269)
T d2hqsa1         264 AWSP  267 (269)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.06  E-value=3.7e-08  Score=93.68  Aligned_cols=260  Identities=9%  Similarity=0.020  Sum_probs=142.4

Q ss_pred             EEEEeC--CCcEEEE--cCCCCce--EEEc-ccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCC
Q 010669          238 IATGGV--DTNAVLF--DRPSGQI--VTTL-SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT  310 (504)
Q Consensus       238 l~sg~~--dg~i~vw--d~~~~~~--~~~~-~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~  310 (504)
                      |++|+.  .+.|+++  |.++++.  +... ......+.-|+|+++++.|++++. +.+..|.+............ ...
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~-~~~   82 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASH-PIG   82 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEE-ECC
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeee-cCC
Confidence            455543  4456554  4444443  2221 223445677999999999888765 56888877654321111111 122


Q ss_pred             cCeEEEEEccCCCEEE--EEe-CCCeEEEEECCCC-eEEEEeecC-----------CCCCCCCCeEEEEECCCCCEEEEE
Q 010669          311 AEVQAVTVHATNKYFV--TAS-LDNTWCFYDLSSG-ICLTQVSDA-----------GTDGRPEGYTSAAFHPDGLILGTG  375 (504)
Q Consensus       311 ~~v~~l~~~p~~~~l~--s~s-~dg~i~iwd~~~~-~~~~~~~~~-----------~~~~~~~~v~~~~~~pdg~~l~~g  375 (504)
                      .....+.++++++.++  ++. ..+.+..+.+... .....+...           ........+.++.|+|||++++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~  162 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence            3455677788887433  322 2345555443221 110000000           000112347899999999988877


Q ss_pred             eC-CCcEEEEEcCCC-cee--eeee--CCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceee-----eecCC--
Q 010669          376 TS-EALVKIWDVKSQ-ANV--AKFD--GHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRS-----FESSD--  440 (504)
Q Consensus       376 ~~-dg~I~iwd~~~~-~~~--~~~~--~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~-----~~~~~--  440 (504)
                      +. ...|.+|+.... ...  ....  ........++|+|+|+++++..+. + |.+|++...+....     .....  
T Consensus       163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~  242 (365)
T d1jofa_         163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG  242 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred             eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccc
Confidence            54 457888876543 221  1111  234578999999999999888766 4 99999876543221     11100  


Q ss_pred             ----------CCCCeeEEEECCCCCEEEEEeC--c------EEEEEeeccCcccee--EEEccCCCCCCceeEEEEee-c
Q 010669          441 ----------SETPTNSVDFDHSGSYLAVASA--D------IRVYQVASVKADWNC--IKTFPDLSGTGAASFLFLFV-L  499 (504)
Q Consensus       441 ----------~~~~v~~i~~~~~g~~l~~~~~--d------i~vw~~~~~~~~~~~--i~~~~~h~~~~~v~~l~~~~-~  499 (504)
                                .......+.++|+|++|+++..  +      +..|++.....-...  +......  .....+++|+| +
T Consensus       243 ~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~--G~~p~~i~~~p~~  320 (365)
T d1jofa_         243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS--GGHSNAVSPCPWS  320 (365)
T ss_dssp             CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC--CTTCCCEEECTTC
T ss_pred             ccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcC--CCCccEEEecCCC
Confidence                      0123457899999999998742  1      555665332211111  1111121  33456788876 6


Q ss_pred             Cc
Q 010669          500 GQ  501 (504)
Q Consensus       500 g~  501 (504)
                      |+
T Consensus       321 G~  322 (365)
T d1jofa_         321 DE  322 (365)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.01  E-value=4.7e-08  Score=88.21  Aligned_cols=221  Identities=10%  Similarity=0.061  Sum_probs=136.6

Q ss_pred             ceeEEEEeeCCCEEEEE-eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEE
Q 010669          267 KVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL  345 (504)
Q Consensus       267 ~v~~l~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~  345 (504)
                      ...++++.++|+..++. +..+.+..++.....  .......+ ......+++.++++++++....+.+++++-.+....
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~--~~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG--TTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----C--EEECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce--EEEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence            45899999999966654 455777777665431  11111222 234578899999998877766667776665555433


Q ss_pred             EEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEE
Q 010669          346 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL  424 (504)
Q Consensus       346 ~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~v  424 (504)
                      ...      ........+++.++|+++++-..+..+..++...................++++++|.++++...++ |..
T Consensus        92 ~~~------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~  165 (260)
T d1rwia_          92 LPF------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK  165 (260)
T ss_dssp             CCC------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEE
T ss_pred             eee------eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccc
Confidence            222      1224578999999999888877777788887655433222222223567899999999877776666 999


Q ss_pred             EEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCcEEEEEeeccCccceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          425 WDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       425 wd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~di~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      +|....... .+... .......++++++|+++++....-+|+.+...   ......+..- +-...++|++.++|.+
T Consensus       166 ~d~~~~~~~-~~~~~-~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~---~~~~~~~~~~-~~~~P~~i~~d~~g~l  237 (260)
T d1rwia_         166 LEAESNNQV-VLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG---STTSTVLPFT-GLNTPLAVAVDSDRTV  237 (260)
T ss_dssp             ECTTTCCEE-ECCCS-SCCSEEEEEECTTCCEEEEETTTTEEEEECTT---CSCCEECCCC-SCCCEEEEEECTTCCE
T ss_pred             cccccceee-eeecc-ccCCCccceeeeeeeeeeeecCCCEEEEEeCC---CCeEEEEccC-CCCCeEEEEEeCCCCE
Confidence            997754332 22221 13567899999999877766655555555332   2222222211 1345688888888754

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=1.8e-10  Score=83.24  Aligned_cols=50  Identities=26%  Similarity=0.432  Sum_probs=46.0

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC-CCCCCCCCCCCCccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG-KCPVTGEPLTMDDIV   51 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~   51 (504)
                      +.|+|+.+++.+||+++ +||+|++.+|++|++..+ +||+++.++...||.
T Consensus        24 l~C~IC~~~~~~pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~   74 (86)
T d1rmda2          24 ISCQICEHILADPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE   74 (86)
T ss_dssp             TBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred             cCCccCCcchhcceecC-CCChhhHHHHHHHHhhCCCcCcccCCCCChhhcc
Confidence            46999999999999996 999999999999998766 699999999988875

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.98  E-value=6.1e-07  Score=81.55  Aligned_cols=220  Identities=13%  Similarity=0.179  Sum_probs=150.2

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEecc------CCcCeEEEEEccCC-CEEEEE-eCCCeEEEEE
Q 010669          267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD------HTAEVQAVTVHATN-KYFVTA-SLDNTWCFYD  338 (504)
Q Consensus       267 ~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~~p~~-~~l~s~-s~dg~i~iwd  338 (504)
                      ....++++++++++++-..++.|++||.+.    ..+..+..      ....-..+.+.++. .++++. +.++.|..++
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC----CEEEEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence            467899999999888877788999998654    33333321      11234456655543 344433 3456777777


Q ss_pred             CCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeee--CCCCCeEEEEEcCCCcEEEE
Q 010669          339 LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLAT  416 (504)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~g~~l~s  416 (504)
                      .. +.....+..    ........+++.++|.++++....+.+.+++. +++.+..+.  .+......+++.++|..+++
T Consensus       100 ~~-g~~~~~~~~----~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~  173 (279)
T d1q7fa_         100 QY-GQFVRKFGA----TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  173 (279)
T ss_dssp             TT-SCEEEEECT----TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             cc-ccceeecCC----CcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEee
Confidence            64 544544432    22346789999999999998888888998885 556666653  35567889999999988777


Q ss_pred             EeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEeeccCccceeEEEccCCCCCCcee
Q 010669          417 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGAAS  492 (504)
Q Consensus       417 ~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~~~~~~~~~i~~~~~h~~~~~v~  492 (504)
                      ....+ |++||.. ++.+..+...........|+++++|+++++-+.+   |.+|+     ..++.+.++..........
T Consensus       174 d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-----~~G~~~~~~~~~~~~~~p~  247 (279)
T d1q7fa_         174 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-----QDGQLISALESKVKHAQCF  247 (279)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-----TTSCEEEEEEESSCCSCEE
T ss_pred             eccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-----CCCCEEEEEeCCCCCCCEe
Confidence            77666 9999964 5666666443334567899999999987775433   66665     4677777765432244678


Q ss_pred             EEEEeecCcc
Q 010669          493 FLFLFVLGQT  502 (504)
Q Consensus       493 ~l~~~~~g~~  502 (504)
                      .+++.++|++
T Consensus       248 ~vav~~dG~l  257 (279)
T d1q7fa_         248 DVALMDDGSV  257 (279)
T ss_dssp             EEEEETTTEE
T ss_pred             EEEEeCCCcE
Confidence            8999999875

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=1.6e-06  Score=80.43  Aligned_cols=222  Identities=12%  Similarity=0.068  Sum_probs=137.4

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC----CCeEEEEECCCC
Q 010669          267 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL----DNTWCFYDLSSG  342 (504)
Q Consensus       267 ~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~----dg~i~iwd~~~~  342 (504)
                      .+-.++|.++|++.++-..++.|..|+..+.   .....+.........++++++|+++++...    .+.+...+...+
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~---~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETK---EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCC---eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            3457899999997777778889988987764   333333445567889999999988777543    234556666655


Q ss_pred             eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC------CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEE
Q 010669          343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT  416 (504)
Q Consensus       343 ~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s  416 (504)
                      .........   ........+++.++|++.++...      .+.+..++... ..+..+...-...+.++|+|+++.|+.
T Consensus       118 ~~~~~~~~~---~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyv  193 (319)
T d2dg1a1         118 NLQDIIEDL---STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWV  193 (319)
T ss_dssp             SCEEEECSS---SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             eeeeeccCC---CcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceEEE
Confidence            544433211   22345788999999997776432      23355555433 333333323345688999999987766


Q ss_pred             EeCC-c-EEEEEcCCCc-ceeee-----ecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCC-
Q 010669          417 AAHD-G-VKLWDLRKLK-NFRSF-----ESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL-  485 (504)
Q Consensus       417 ~~~d-~-v~vwd~~~~~-~~~~~-----~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h-  485 (504)
                      +... + |..||+.... .....     ...........++++.+|++.++....  |.+|+     ..++.+..+.-- 
T Consensus       194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-----p~G~~l~~i~~P~  268 (319)
T d2dg1a1         194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-----KRGYPIGQILIPG  268 (319)
T ss_dssp             EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-----TTSCEEEEEECTT
T ss_pred             ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-----CCCcEEEEEeCCC
Confidence            6544 4 9999986432 11111     111112345689999999977776655  66665     456666655321 


Q ss_pred             ---CCCCceeEEEEeecC
Q 010669          486 ---SGTGAASFLFLFVLG  500 (504)
Q Consensus       486 ---~~~~~v~~l~~~~~g  500 (504)
                         .....+++++|.+.+
T Consensus       269 ~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         269 RDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             GGGTCSCBCCEEEECTTS
T ss_pred             cCCCcCceeeeEEEeCCC
Confidence               013356788876654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.3e-07  Score=89.82  Aligned_cols=271  Identities=11%  Similarity=0.047  Sum_probs=154.7

Q ss_pred             CeEEEEeccCCCEEEEEe---------CCCcEEEEcCCCCceEEEc--ccCccceeEEEEeeCCCEEEEEeCCCcEEEEe
Q 010669          225 GIVSLDIHYSKDVIATGG---------VDTNAVLFDRPSGQIVTTL--SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ  293 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg~---------~dg~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd  293 (504)
                      .+....||||+++++.+.         ..+.+.+||+.++......  ......+....|||||+.++-.. ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            466778999999887763         3577899999887654332  23344566789999999887765 46788887


Q ss_pred             CCCCCCcceeEEeccCCcC-----------------eEEEEEccCCCEEEEEeCC-C-----------------------
Q 010669          294 GSEDGNYDCKHTLKDHTAE-----------------VQAVTVHATNKYFVTASLD-N-----------------------  332 (504)
Q Consensus       294 ~~~~~~~~~~~~~~~h~~~-----------------v~~l~~~p~~~~l~s~s~d-g-----------------------  332 (504)
                      ..++...+  .+..+..+.                 -.++.|+|||++|+....| .                       
T Consensus       141 ~~~~~~~~--lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Y  218 (465)
T d1xfda1         141 HVGKQAIR--VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (465)
T ss_dssp             SSSSCCEE--EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             cCCCceEE--EecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeec
Confidence            76542211  111121111                 2577899999999886532 2                       


Q ss_pred             ----------eEEEEECCCCeEEEEeecCC-CCCCCCCeEEEEECCCCCEEEEEeC-C---CcEEEEEcCCCceeeeeeC
Q 010669          333 ----------TWCFYDLSSGICLTQVSDAG-TDGRPEGYTSAAFHPDGLILGTGTS-E---ALVKIWDVKSQANVAKFDG  397 (504)
Q Consensus       333 ----------~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~pdg~~l~~g~~-d---g~I~iwd~~~~~~~~~~~~  397 (504)
                                .+.++|+.++.......... .......+..+.|+|++++++.... +   ..|.++|..+++....+..
T Consensus       219 p~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e  298 (465)
T d1xfda1         219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (465)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             cccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE
Confidence                      23444444332221111100 0011224678899999987766433 2   3588899998876554432


Q ss_pred             C-CCCe----EEEEEcCCCcEEE--EEe-CC---cEEEEEcC------CCcceeeeecCCCCCCeeEE-EECCCCCEEEE
Q 010669          398 H-VGAV----TAISFSENGYYLA--TAA-HD---GVKLWDLR------KLKNFRSFESSDSETPTNSV-DFDHSGSYLAV  459 (504)
Q Consensus       398 ~-~~~i----~~l~~s~~g~~l~--s~~-~d---~v~vwd~~------~~~~~~~~~~~~~~~~v~~i-~~~~~g~~l~~  459 (504)
                      + .+.|    ....|++||..++  ..+ .+   +++..++.      .++.+..+...  .-.|..+ .|+.++..|+.
T Consensus       299 ~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G--~w~V~~i~~~d~~~~~vyF  376 (465)
T d1xfda1         299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYF  376 (465)
T ss_dssp             ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEE
T ss_pred             cCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccC--CceEEEEEEEcCCCCEEEE
Confidence            2 2222    3467999987432  222 22   36555442      22223333221  3456664 69998877764


Q ss_pred             Ee-Cc----EEEEEeeccCc-cceeEEEccCCCCCCceeEEEEeecCcc
Q 010669          460 AS-AD----IRVYQVASVKA-DWNCIKTFPDLSGTGAASFLFLFVLGQT  502 (504)
Q Consensus       460 ~~-~d----i~vw~~~~~~~-~~~~i~~~~~h~~~~~v~~l~~~~~g~~  502 (504)
                      .+ .+    -+||.+..... ..+++..-...  .....++.|+|+|+.
T Consensus       377 ~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~--~~~~~~~~~S~~~~y  423 (465)
T d1xfda1         377 LSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE--NCTYFSASFSHSMDF  423 (465)
T ss_dssp             EESSSCTTCCEEEEECSSTTCCCBCSSTTSSS--SCCCCEEEECTTSSE
T ss_pred             EEeCCCCCceEEEEEECCCCCcceeeccccCC--CCCEEEEEECCCCCE
Confidence            43 33    67888854322 22233211122  445678889998864

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.87  E-value=3.9e-07  Score=84.41  Aligned_cols=198  Identities=9%  Similarity=0.131  Sum_probs=128.1

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCc----cceeEEEEeeCCCEEEEEeC---------------C
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHS----KKVTSVKFVTEGDLFLTGSA---------------D  286 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~s~~~~~l~s~s~---------------d  286 (504)
                      -..+.|+++++.++++...+.+..++...+..........    ...+.+++.++|++.++-..               +
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            4579999999988888777778888876543221111111    13678999999988776432               2


Q ss_pred             CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCC-----EEEEEeCCCeEEEEECCCCeEEEE---eecCCCCCCCC
Q 010669          287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-----YFVTASLDNTWCFYDLSSGICLTQ---VSDAGTDGRPE  358 (504)
Q Consensus       287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-----~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~  358 (504)
                      |.|..++..  +  .... +...-..-+.++|+|+++     ++++-+..+.|..||+.....+..   +... ......
T Consensus       153 G~v~~~~~d--g--~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~-~~~~~~  226 (314)
T d1pjxa_         153 GSIYCFTTD--G--QMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI-PGTHEG  226 (314)
T ss_dssp             EEEEEECTT--S--CEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC-CCCSSC
T ss_pred             ceEEEEeec--C--ceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEc-cccccc
Confidence            334444332  2  1111 112223457899998765     444556788899998764432221   1110 111223


Q ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEE-eCCc-EEEEEcCC
Q 010669          359 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA-AHDG-VKLWDLRK  429 (504)
Q Consensus       359 ~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~-~~d~-v~vwd~~~  429 (504)
                      ....+++..+|+++++....+.|.+||...+..+..+......+++++|.++++.|+.. +.++ |..+++..
T Consensus       227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            45689999999998888888999999998887777776666688999999998755444 4445 88777653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=9.9e-07  Score=86.31  Aligned_cols=224  Identities=10%  Similarity=0.050  Sum_probs=138.8

Q ss_pred             EeccCCCEEEEEeCCCcEEEEcCCCCceEEEccc---CccceeEEEEeeCCCEEEEEe---------CCCcEEEEeCCCC
Q 010669          230 DIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG---HSKKVTSVKFVTEGDLFLTGS---------ADKTVRVWQGSED  297 (504)
Q Consensus       230 ~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~s---------~dg~i~iwd~~~~  297 (504)
                      .|.+++.++.. ..+|.|.+||+.+++....+..   ..-.+....||||+++++...         ..+.+.+||+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            57788776653 4578899999988765433332   223577888999999877653         3577889999875


Q ss_pred             CCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCC-------------CCCCeEEEE
Q 010669          298 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG-------------RPEGYTSAA  364 (504)
Q Consensus       298 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~~v~~~~  364 (504)
                      . ...+.........+....|+|+|+.++-.. ++.|.+.+..++.............             ....-..+.
T Consensus       102 ~-~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         102 D-PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             C-CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             c-eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            2 122222223345566789999999988775 5778888888776655443211100             001125778


Q ss_pred             ECCCCCEEEEEeCC-Cc---------------------------------EEEEEcCCCceeeee------eCCCCCeEE
Q 010669          365 FHPDGLILGTGTSE-AL---------------------------------VKIWDVKSQANVAKF------DGHVGAVTA  404 (504)
Q Consensus       365 ~~pdg~~l~~g~~d-g~---------------------------------I~iwd~~~~~~~~~~------~~~~~~i~~  404 (504)
                      |+|||+.||....| ..                                 +.++|+..+......      .....-+..
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            99999999986422 22                                 344444433221111      011224678


Q ss_pred             EEEcCCCcEEEEEeCC----c-EEEEEcCCCcceeeeecCCCCCCe----eEEEECCCCCEE
Q 010669          405 ISFSENGYYLATAAHD----G-VKLWDLRKLKNFRSFESSDSETPT----NSVDFDHSGSYL  457 (504)
Q Consensus       405 l~~s~~g~~l~s~~~d----~-v~vwd~~~~~~~~~~~~~~~~~~v----~~i~~~~~g~~l  457 (504)
                      +.|++++.+++.....    . |.++|..+++....+.... ...|    ....|+++|+.+
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~-~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES-EAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC-SSCCCCCCCCCEECTTSCSE
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC-CceEeccCCceeEccCCCee
Confidence            9999999877665432    2 8889999887655444321 2222    346789999854

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.71  E-value=1.7e-05  Score=72.28  Aligned_cols=220  Identities=13%  Similarity=0.106  Sum_probs=145.3

Q ss_pred             EEEeccC-CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEe
Q 010669          228 SLDIHYS-KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL  306 (504)
Q Consensus       228 ~~~~s~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  306 (504)
                      ...|++. +.+..+=-..+.|.-||..+++.. .+. ....+.++++.+++.++++ +.+ -+.++|..++. ...+...
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~-~~~l~~~   96 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGV-LTLHAEL   96 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCC-EEEEECS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccce-eeEEeee
Confidence            4568764 445555556788999999887643 332 3456889999998876665 455 48889988742 2222222


Q ss_pred             cc--CCcCeEEEEEccCCCEEEEEeC----CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEE-EEeCCC
Q 010669          307 KD--HTAEVQAVTVHATNKYFVTASL----DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSEA  379 (504)
Q Consensus       307 ~~--h~~~v~~l~~~p~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~-~g~~dg  379 (504)
                      ..  ....++.+.+.|+|++.++...    .+.-.+|.+..++.......      -...+.++|+++++.+. +-+..+
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~------~~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD------ISIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE------ESSEEEEEECTTSCEEEEEETTTC
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec------cCCcceeeecCCCceEEEeecccc
Confidence            11  1235789999999997776543    23445666666755444432      12467899999998654 555678


Q ss_pred             cEEEEEcCCC------ce--eeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEE
Q 010669          380 LVKIWDVKSQ------AN--VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF  450 (504)
Q Consensus       380 ~I~iwd~~~~------~~--~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~  450 (504)
                      .|..|++...      +.  ...+.+..+....+++..+|++.++.-..+ |..||. .++.+..+..+  ...+++++|
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP--~~~~T~~~F  247 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--GKQTTCPAF  247 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--CSBEEEEEE
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCC--CCceEEEEE
Confidence            8999987421      11  112233455688999999998777766666 999995 68888888876  356899999


Q ss_pred             C-CCCCEEEEEe
Q 010669          451 D-HSGSYLAVAS  461 (504)
Q Consensus       451 ~-~~g~~l~~~~  461 (504)
                      - ++.+.|++.+
T Consensus       248 GG~d~~~LyvTt  259 (295)
T d2ghsa1         248 IGPDASRLLVTS  259 (295)
T ss_dssp             ESTTSCEEEEEE
T ss_pred             eCCCCCEEEEEE
Confidence            5 6766666543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=7.5e-09  Score=78.50  Aligned_cols=51  Identities=24%  Similarity=0.427  Sum_probs=45.2

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcC---CCCCCCCCCCCCcccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYG---KCPVTGEPLTMDDIVP   52 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~   52 (504)
                      +.|+|+.+++++||++| +||+|++.+|.+|+...+   +||+++++++.++|.+
T Consensus        22 l~CpIC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~   75 (103)
T d1jm7a_          22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE   75 (103)
T ss_dssp             TSCSSSCCCCSSCCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred             cCCCccCchhCCeEEcC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCc
Confidence            35999999999999996 999999999999998654   6999999998887643

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.5e-08  Score=72.32  Aligned_cols=51  Identities=14%  Similarity=0.221  Sum_probs=46.3

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhc-CCCCCCCCCCCCCccccc
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDY-GKCPVTGEPLTMDDIVPI   53 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~   53 (504)
                      .|+|+.+.+.+||++| +||+|++.+|++|+..+ .+||+++.+|+-.+.|.|
T Consensus        25 ~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~i   76 (79)
T d1fbva4          25 LCKICAENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV   76 (79)
T ss_dssp             BCTTTSSSBCCEECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCSSC
T ss_pred             CCccCCCcCCCeEEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccCCceeec
Confidence            5999999999999997 99999999999999865 469999999998777766

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.63  E-value=3.7e-06  Score=75.67  Aligned_cols=219  Identities=12%  Similarity=0.063  Sum_probs=121.7

Q ss_pred             eccC--CCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeC-CC-----cEEEEeCCCCCCcce
Q 010669          231 IHYS--KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DK-----TVRVWQGSEDGNYDC  302 (504)
Q Consensus       231 ~s~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~-dg-----~i~iwd~~~~~~~~~  302 (504)
                      .+|+  |+.++-.+ +|.|.++|+.+++.. .+..+.+.+...+|||||+.|+.... ++     .|.+++..++.    
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~----   79 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE----   79 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE----
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc----
Confidence            5788  99887664 567999999887754 56667778899999999998875432 22     36666665532    


Q ss_pred             eEEec-------cCCcCeEEEEEccCCCEEEEEeCC------CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC
Q 010669          303 KHTLK-------DHTAEVQAVTVHATNKYFVTASLD------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG  369 (504)
Q Consensus       303 ~~~~~-------~h~~~v~~l~~~p~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg  369 (504)
                      ...+.       ..........|+|+|+.++.....      ..+...+...+.......        .......+.+++
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~  151 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL--------GPATHILFADGR  151 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS--------CSCSEEEEETTE
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC--------CccceeeecCCC
Confidence            22222       122345778899999988876432      235566666554432221        122333334444


Q ss_pred             CEEEEEeCCC-----------cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC--c-EEEEEcCCCcceee
Q 010669          370 LILGTGTSEA-----------LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRS  435 (504)
Q Consensus       370 ~~l~~g~~dg-----------~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d--~-v~vwd~~~~~~~~~  435 (504)
                      ..++......           ...++........ ....+........++++.. +.....+  . |.++|+......+ 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~-  228 (281)
T d1k32a2         152 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLRK-  228 (281)
T ss_dssp             EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCEE-
T ss_pred             eEEEeeccccceeeeeccCCcceeeeecccccee-eccCCccccceeeeecccc-ceecccccccceEEEeCCCCceEE-
Confidence            4444432221           1112222222222 2222334455566665533 3333333  2 8889987665433 


Q ss_pred             eecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEe
Q 010669          436 FESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV  469 (504)
Q Consensus       436 ~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~  469 (504)
                      +...   .......|+|||+.|+..... +.++++
T Consensus       229 lt~~---~~~~~~~~SpDG~~I~f~~~~~l~~~d~  260 (281)
T d1k32a2         229 HTSF---TDYYPRHLNTDGRRILFSKGGSIYIFNP  260 (281)
T ss_dssp             CCCC---CSSCEEEEEESSSCEEEEETTEEEEECT
T ss_pred             eecC---CCcccccCcCCCCEEEEEeCCEEEEEEC
Confidence            3222   122334689999988775544 777776

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.55  E-value=8e-05  Score=67.61  Aligned_cols=212  Identities=13%  Similarity=0.103  Sum_probs=134.5

Q ss_pred             EEEEee-CCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 010669          270 SVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV  348 (504)
Q Consensus       270 ~l~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~  348 (504)
                      +..|++ ++.+..+--..+.|.-||..++    ....+ .....+.++.+.++|.++++ +.+ .+.++|..+++.....
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g----~~~~~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASG----RKTVH-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTT----EEEEE-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCC----eEEEE-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence            345766 3444444446678888988774    22222 23456889999888877665 444 5889999988765443


Q ss_pred             ecCCCCCCCCCeEEEEECCCCCEEEEEeC----CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-E
Q 010669          349 SDAGTDGRPEGYTSAAFHPDGLILGTGTS----EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-V  422 (504)
Q Consensus       349 ~~~~~~~~~~~v~~~~~~pdg~~l~~g~~----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v  422 (504)
                      ... .......++.+.+.|+|++.++...    .+.-.+|.+..++....+. .-...+.++|++++..|+.+... + |
T Consensus        95 ~~~-~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I  172 (295)
T d2ghsa1          95 ELE-SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRL  172 (295)
T ss_dssp             CSS-TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             eee-cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeeccccee
Confidence            221 1122346889999999997776532    2345667776665544443 23456889999999877766554 4 8


Q ss_pred             EEEEcCCCc------ceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccCCCCCCceeEE
Q 010669          423 KLWDLRKLK------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGAASFL  494 (504)
Q Consensus       423 ~vwd~~~~~------~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~h~~~~~v~~l  494 (504)
                      ..|++....      ................++++.+|++.++.-..  |..|+     ..++.+..+.--  ...+|++
T Consensus       173 ~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-----p~G~~~~~i~lP--~~~~T~~  245 (295)
T d2ghsa1         173 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-----TDGNHIARYEVP--GKQTTCP  245 (295)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-----TTCCEEEEEECS--CSBEEEE
T ss_pred             eEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-----CCCcEeeEecCC--CCceEEE
Confidence            888874321      11112222224567899999999987765444  66666     457777776543  3468888


Q ss_pred             EEe
Q 010669          495 FLF  497 (504)
Q Consensus       495 ~~~  497 (504)
                      +|-
T Consensus       246 ~FG  248 (295)
T d2ghsa1         246 AFI  248 (295)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            885

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.2e-08  Score=76.48  Aligned_cols=50  Identities=24%  Similarity=0.381  Sum_probs=43.9

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVP   52 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~   52 (504)
                      |.|+|+.+++.+||+.+.+||+|++.+|.+|+.  .+||.++.+++..+|.+
T Consensus        23 l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~l~~   72 (97)
T d1jm7b_          23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKI   72 (97)
T ss_dssp             TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCC
T ss_pred             CCCccCCchhhcCceeCCCCCchhHHHHHHHHh--ccccccCCcCchhhCcc
Confidence            579999999999997546999999999999995  45999999999888754

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.30  E-value=3.6e-07  Score=62.92  Aligned_cols=45  Identities=24%  Similarity=0.314  Sum_probs=40.7

Q ss_pred             ccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   46 (504)
                      -|+|+.+.+.+|++...+||+|.+.+|.+|++.+.+||+++.+++
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            399999999998775569999999999999999999999998875

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.5e-07  Score=61.68  Aligned_cols=46  Identities=13%  Similarity=0.210  Sum_probs=40.3

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCCCcc
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDI   50 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~   50 (504)
                      +.|+|+.+.+.+|++.| +||+|.+.+|+++   +.+||+++++++++..
T Consensus         7 l~C~IC~~~~~~p~~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           7 LRCQQCQAEAKCPKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             SSCSSSCSSCBCCSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             CCCcccCcccCCCEEec-CCCHHhHHHHHcC---CCcCcCCCCcccCCCC
Confidence            46999999999999997 9999999999864   5689999999987654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.06  E-value=0.0016  Score=60.35  Aligned_cols=240  Identities=10%  Similarity=0.108  Sum_probs=145.5

Q ss_pred             EEEEEeCCCcEEEEcCCCCceEEEcccC---------------------------------------cccee--EEEEe-
Q 010669          237 VIATGGVDTNAVLFDRPSGQIVTTLSGH---------------------------------------SKKVT--SVKFV-  274 (504)
Q Consensus       237 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h---------------------------------------~~~v~--~l~~s-  274 (504)
                      .+.+|+..|.|+||-+.+++.+..+.-.                                       .+...  .+.+. 
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td   94 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   94 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence            3567888999999998888776654210                                       01111  33443 


Q ss_pred             --eCCCEEEEEe-CCCcEEEEeCCCCCCcceeEEec-cCCcCeEEEEEcc--CCCEEEEEeCCC----------------
Q 010669          275 --TEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHA--TNKYFVTASLDN----------------  332 (504)
Q Consensus       275 --~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~p--~~~~l~s~s~dg----------------  332 (504)
                        +||+++++.. .++.|.+-|+.+.   ++...+. .....+..+...+  +..|++.++.+.                
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~f---kt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y  171 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVM---KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  171 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTT---EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-E
T ss_pred             CccceeEEEEEcCCCceEEEEECcce---eeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhc
Confidence              3678777665 6788999999875   4433222 2345567777654  445777776532                


Q ss_pred             --eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCC---------------cEEEEE----------
Q 010669          333 --TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA---------------LVKIWD----------  385 (504)
Q Consensus       333 --~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg---------------~I~iwd----------  385 (504)
                        .+.++|..+.+...++...      .....+.++++|+++++.+.+.               .+.+++          
T Consensus       172 ~~~~t~ID~~tm~V~~QV~V~------g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~  245 (459)
T d1fwxa2         172 VNVFTAVDADKWEVAWQVLVS------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  245 (459)
T ss_dssp             EEEEEEEETTTTEEEEEEEES------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             ceEEEEEecCCceEEEEeeeC------CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence              3678899998887777532      2456799999999998876431               133343          


Q ss_pred             -------------cCCC--ceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCccee--------eeec-C
Q 010669          386 -------------VKSQ--ANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFR--------SFES-S  439 (504)
Q Consensus       386 -------------~~~~--~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~--------~~~~-~  439 (504)
                                   .+..  ..+..+-.-......+.++|||+++++++.- . +.|+|+++.....        .+.. .
T Consensus       246 Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         246 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             TCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             CCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence                         3321  1111111112335678999999999988865 3 9999997543211        1111 1


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCc--EEEEEeecc------CccceeEEEccCC
Q 010669          440 DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV------KADWNCIKTFPDL  485 (504)
Q Consensus       440 ~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~------~~~~~~i~~~~~h  485 (504)
                      ........-+|+..|....+---|  |.-|++...      .+.+..+..++-|
T Consensus       326 elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~  379 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH  379 (459)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred             ccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccc
Confidence            113455678899988544443345  999998432      2344566666554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=0.0043  Score=54.61  Aligned_cols=216  Identities=10%  Similarity=0.002  Sum_probs=134.5

Q ss_pred             CeEEEEeccCCCEEEEE-eCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCCcce
Q 010669          225 GIVSLDIHYSKDVIATG-GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDC  302 (504)
Q Consensus       225 ~I~~~~~s~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~s~dg~i~iwd~~~~~~~~~  302 (504)
                      .+.+++|++..+.|.-. ..++.|+..++..+.....+......+.++++..-+..|+ +-...+.|.+.++....   .
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~---~  113 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---R  113 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---C
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce---E
Confidence            47789999887766655 4567788888876655544544445688999986555554 54567799999987642   2


Q ss_pred             eEEeccCCcCeEEEEEccCCCEEEEEeCC---CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE-eCC
Q 010669          303 KHTLKDHTAEVQAVTVHATNKYFVTASLD---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSE  378 (504)
Q Consensus       303 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g-~~d  378 (504)
                      ...+.........++++|...+++.....   +.|.--++..........     ..-.....+++.+.++.|... ...
T Consensus       114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-----~~~~~P~glaiD~~~~~lYw~d~~~  188 (263)
T d1npea_         114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-----DNLGLPNGLTFDAFSSQLCWVDAGT  188 (263)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-----TTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee-----ecccccceEEEeecCcEEEEEeCCC
Confidence            22223333568999999988777765432   235555665544333222     112356889999876666444 567


Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECC
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH  452 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~  452 (504)
                      +.|...|+........+.+.. ....|++.  +.+|+....+ + |...|..+++....+.... .....++.+.+
T Consensus       189 ~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~-~~~~~gi~v~~  260 (263)
T d1npea_         189 HRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIAL  260 (263)
T ss_dssp             TEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEEC
T ss_pred             CEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCC-CCCcceEEEeC
Confidence            889999986554443444332 34678875  4455555443 4 9999998887766554322 23444555544

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.6e-06  Score=57.75  Aligned_cols=49  Identities=18%  Similarity=0.363  Sum_probs=39.1

Q ss_pred             ccccCCCCC----CCc-eEeCCCCeeeeHHHHHHHHHhc-CCCCCCCCCCCCCccc
Q 010669            2 NCSISGEVP----EEP-VVSKNSGLLFEKRLIERHILDY-GKCPVTGEPLTMDDIV   51 (504)
Q Consensus         2 ~c~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~   51 (504)
                      .|+|+.+.+    ..+ +++ .+||+|.+.+|++|++.. ++||+++++|+.+++.
T Consensus         5 ~CpIC~~~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~~   59 (65)
T d1g25a_           5 GCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR   59 (65)
T ss_dssp             CCSTTTTHHHHCSSCCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred             CCCcCCceeecCCceEEEeC-ccChHhhHHHHHHHhCcCcCCCCCCCcCccccccc
Confidence            599998753    223 555 599999999999999764 5799999999988764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.80  E-value=0.0014  Score=57.90  Aligned_cols=114  Identities=11%  Similarity=0.133  Sum_probs=72.9

Q ss_pred             EEeeC--CCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeC-C-----CeEEEEECCCCe
Q 010669          272 KFVTE--GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-D-----NTWCFYDLSSGI  343 (504)
Q Consensus       272 ~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-d-----g~i~iwd~~~~~  343 (504)
                      ..+|+  |+.++..+. |.|.+.|+.++    ....+..+.+.+....|+|||+.|+.... +     ..|.+++..++.
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g----~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSG----STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTC----CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCC----CEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            45788  988776544 56888888874    23445566777899999999998886543 2     247788888887


Q ss_pred             EEEEeecCC-CCCCCCCeEEEEECCCCCEEEEEeCC------CcEEEEEcCCCc
Q 010669          344 CLTQVSDAG-TDGRPEGYTSAAFHPDGLILGTGTSE------ALVKIWDVKSQA  390 (504)
Q Consensus       344 ~~~~~~~~~-~~~~~~~v~~~~~~pdg~~l~~g~~d------g~I~iwd~~~~~  390 (504)
                      ......... ............|+|||+.++.....      ..+...+...+.
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  133 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN  133 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence            654322110 00112345678999999988875432      234455554443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.74  E-value=0.0057  Score=56.84  Aligned_cols=254  Identities=12%  Similarity=0.082  Sum_probs=138.8

Q ss_pred             eEEEEeccCCCEEEEEeCCC-----------cEEEEcCCCCceEE---EcccCccceeEEEEeeCCCEEEEEeCC-CcEE
Q 010669          226 IVSLDIHYSKDVIATGGVDT-----------NAVLFDRPSGQIVT---TLSGHSKKVTSVKFVTEGDLFLTGSAD-KTVR  290 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg-----------~i~vwd~~~~~~~~---~~~~h~~~v~~l~~s~~~~~l~s~s~d-g~i~  290 (504)
                      +.......+|++++.|+.+.           .+.+||..++.-..   ....|.......++.+++.+++.|+.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            34455566889888887531           36789998764321   112233334566788899998888755 5899


Q ss_pred             EEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCC------CeEEEEECCCCeEEEEeecCC----CCCC----
Q 010669          291 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD------NTWCFYDLSSGICLTQVSDAG----TDGR----  356 (504)
Q Consensus       291 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~----~~~~----  356 (504)
                      +||..+. .+.....+... ..-...+..++|++++.++.+      ..+.+||..+..-...-....    ...+    
T Consensus       102 ~yd~~~~-~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  179 (387)
T d1k3ia3         102 LYDSSSD-SWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  179 (387)
T ss_dssp             EEEGGGT-EEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             EecCccC-ccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence            9998873 23222222211 223456667799999988753      368999998876433211000    0000    


Q ss_pred             -CCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeee--eC----CCC--CeEEEEE-cCCCcEEEEEeCC------
Q 010669          357 -PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF--DG----HVG--AVTAISF-SENGYYLATAAHD------  420 (504)
Q Consensus       357 -~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~--~~----~~~--~i~~l~~-s~~g~~l~s~~~d------  420 (504)
                       ......+...++|+++..+..++.+.++|..+......-  ..    +..  .-.++.+ ..+++.++.|+..      
T Consensus       180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~  259 (387)
T d1k3ia3         180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  259 (387)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCc
Confidence             011122334457888888888888888887665432211  10    111  1122223 3467777777532      


Q ss_pred             --c-EEEEEcCCCcce-eeeec---CCCCCCeeEEEECCCCCEEEEEeCc-------------EEEEEeeccCccceeEE
Q 010669          421 --G-VKLWDLRKLKNF-RSFES---SDSETPTNSVDFDHSGSYLAVASAD-------------IRVYQVASVKADWNCIK  480 (504)
Q Consensus       421 --~-v~vwd~~~~~~~-~~~~~---~~~~~~v~~i~~~~~g~~l~~~~~d-------------i~vw~~~~~~~~~~~i~  480 (504)
                        . ..+.++...... .....   ......-.+....++|+++++|+.+             +.+||..  ..+|..+.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~--~~~W~~~~  337 (387)
T d1k3ia3         260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE--QDTFYKQN  337 (387)
T ss_dssp             CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG--GTEEEECC
T ss_pred             ccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECC--CCeEEECC
Confidence              1 334443321111 11111   0111223356667899999988742             5677754  36788776


Q ss_pred             Ecc
Q 010669          481 TFP  483 (504)
Q Consensus       481 ~~~  483 (504)
                      ...
T Consensus       338 ~~~  340 (387)
T d1k3ia3         338 PNS  340 (387)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            554

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.68  E-value=1.4e-05  Score=51.79  Aligned_cols=45  Identities=13%  Similarity=0.266  Sum_probs=37.9

Q ss_pred             ccccCCCCCCC---ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCC
Q 010669            2 NCSISGEVPEE---PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   46 (504)
                      .|+|+.+..++   ++..|.+||+|-+.+|.+|++.+.+||+.+.+|-
T Consensus         7 ~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            49999877654   4455679999999999999999999999998774

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.60  E-value=0.002  Score=59.64  Aligned_cols=142  Identities=12%  Similarity=0.072  Sum_probs=96.6

Q ss_pred             CCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECC--CCCEEEEEeCCC------------------
Q 010669          321 TNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEA------------------  379 (504)
Q Consensus       321 ~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--dg~~l~~g~~dg------------------  379 (504)
                      ||+++++.. .++.|.+.|+++.+....+..    .....+..+...+  ...+++.++.+.                  
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~i----Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEI----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEEC----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEec----CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence            678877776 578999999999998776643    2234567666655  455777766532                  


Q ss_pred             cEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC---------------------------------------
Q 010669          380 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---------------------------------------  420 (504)
Q Consensus       380 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---------------------------------------  420 (504)
                      .+.++|..+.+....... .+....+.++++|+++++.+.+                                       
T Consensus       174 ~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            367788888777666552 3456789999999999987632                                       


Q ss_pred             cEEEEEcCCC---cceeeeecCCCCCCeeEEEECCCCCEEEEEeCc---EEEEEee
Q 010669          421 GVKLWDLRKL---KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVA  470 (504)
Q Consensus       421 ~v~vwd~~~~---~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~~  470 (504)
                      ++.+-|.++.   ..++.+...   .....+.++|||+|+++++.-   +.|+|+.
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVp---KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             CceeecccccCCcceeEEEecC---CCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            1344444431   122223332   346678999999999998864   9999984

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.024  Score=49.66  Aligned_cols=241  Identities=7%  Similarity=-0.035  Sum_probs=137.9

Q ss_pred             cEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEe-CCCcEEEEeCCCCCCc-ceeEEeccCCcCeEEEEEccCCC
Q 010669          246 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNY-DCKHTLKDHTAEVQAVTVHATNK  323 (504)
Q Consensus       246 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~  323 (504)
                      .|+-.++.+......+. ....+.++.|.+..+.|+-.. .++.|.-.++...... .....+......+.++++.+.+.
T Consensus        11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            57778887655444333 445678899988777666554 5566766665432111 11122223334567888877666


Q ss_pred             EEEEE-eCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEE-EEE-eCCCcEEEEEcCCCceeeeeeCCCC
Q 010669          324 YFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTG-TSEALVKIWDVKSQANVAKFDGHVG  400 (504)
Q Consensus       324 ~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l-~~g-~~dg~I~iwd~~~~~~~~~~~~~~~  400 (504)
                      .|..+ ...+.|.+.++..........     ........++++|...+| .+. +..+.|.-.++............-.
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~-----~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~  164 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  164 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEc-----CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccc
Confidence            55554 456789999998776554443     222457889999854444 443 2345677777644333322333345


Q ss_pred             CeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeeccCccce
Q 010669          401 AVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWN  477 (504)
Q Consensus       401 ~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~~~~~~~  477 (504)
                      ..+.+++.+.+..|+.+... + |...|+...................++++.  +.+|+..... -.||.+++  .++.
T Consensus       165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~--~~g~  240 (266)
T d1ijqa1         165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR--LTGS  240 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEET--TTCC
T ss_pred             eeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEEC--CCCc
Confidence            67899999887777776554 4 888898654433333332222345677776  4566666544 56666543  2344


Q ss_pred             eEEEccCCCCCCceeEEEEee
Q 010669          478 CIKTFPDLSGTGAASFLFLFV  498 (504)
Q Consensus       478 ~i~~~~~h~~~~~v~~l~~~~  498 (504)
                      ....+...  ...+.++.++.
T Consensus       241 ~~~~~~~~--~~~p~~i~v~~  259 (266)
T d1ijqa1         241 DVNLLAEN--LLSPEDMVLFH  259 (266)
T ss_dssp             CCEEEECS--CSCCCCEEEES
T ss_pred             ceEEEEcC--CCCceEEEEEC
Confidence            44444332  34456665553

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=0.025  Score=49.41  Aligned_cols=239  Identities=7%  Similarity=-0.063  Sum_probs=138.9

Q ss_pred             CcEEEEcCCCCc-----eEEEcccCccceeEEEEeeCCCEEEEE-eCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEE
Q 010669          245 TNAVLFDRPSGQ-----IVTTLSGHSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTV  318 (504)
Q Consensus       245 g~i~vwd~~~~~-----~~~~~~~h~~~v~~l~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~  318 (504)
                      +.|+-.+++...     ....+..+...+.+++|....+.++-. ..++.|+..++....   ....+......+.++++
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~---~~~v~~~~~~~p~~iAv   86 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PTTIIRQDLGSPEGIAL   86 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CEEEECTTCCCEEEEEE
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC---cEEEEEeccccccEEEE
Confidence            356555554322     122233445567889998876666554 456778888876542   22223333356889999


Q ss_pred             ccCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeC---CCcEEEEEcCCCceeee
Q 010669          319 HATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWDVKSQANVAK  394 (504)
Q Consensus       319 ~p~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~---dg~I~iwd~~~~~~~~~  394 (504)
                      ..-+..|+.+ ...+.|.+.++..........     ........++++|...+++....   .+.|.--++........
T Consensus        87 D~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~-----~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i  161 (263)
T d1npea_          87 DHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-----TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (263)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             eccCCeEEEeccCCCEEEEEecCCceEEEEec-----ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee
Confidence            8766655544 456799999998665433322     11245789999996655554332   22344445543332222


Q ss_pred             eeCCCCCeEEEEEcCCCcEEEEEeCC-c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc-EEEEEeec
Q 010669          395 FDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVAS  471 (504)
Q Consensus       395 ~~~~~~~i~~l~~s~~g~~l~s~~~d-~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d-i~vw~~~~  471 (504)
                      ....-.....|++.+.+..|+.+... + |...|+........+...   ....++++.  +.+|+....+ -.|+.++.
T Consensus       162 ~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~---~~P~~lav~--~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred             eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC---CCcEEEEEE--CCEEEEEECCCCEEEEEEC
Confidence            22233567899999887777666544 4 988998755433333322   235678775  5667766555 55555543


Q ss_pred             cCccceeEEEccCCCCCCceeEEEEeec
Q 010669          472 VKADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       472 ~~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                        ..++.+..+..+ ......++.+.++
T Consensus       237 --~~g~~~~~~~~~-~~~~~~gi~v~~~  261 (263)
T d1npea_         237 --AISKEMDTFHPH-KQTRLYGITIALS  261 (263)
T ss_dssp             --TTTEEEEEECCS-SCCCCCCEEEECS
T ss_pred             --CCCccceEECCC-CCCCcceEEEeCC
Confidence              346666655433 2445667766553

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=0.027  Score=49.24  Aligned_cols=226  Identities=13%  Similarity=0.145  Sum_probs=134.9

Q ss_pred             EEEeccCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEec
Q 010669          228 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK  307 (504)
Q Consensus       228 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  307 (504)
                      +.-.+|..+.||.-+ ..++.+||+++.+.++.+.- ...|.-=.|-.+.. |+... +..|.-|+++...  .+.+.+.
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~-L~lVT-~taVYHW~~~g~s--~P~k~fd  140 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES--QPVKMFD  140 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSSE-EEEEC-SSEEEEEESSSSC--CCEEEEE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCCE-EEEEc-CCceEEEcccCCC--Cchhhhh
Confidence            344678888777766 45899999999998888774 34676667765444 43333 3479999996543  4555555


Q ss_pred             cCC----cCeEEEEEccCCCEEEEEe---C----CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCC---CEEE
Q 010669          308 DHT----AEVQAVTVHATNKYFVTAS---L----DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG---LILG  373 (504)
Q Consensus       308 ~h~----~~v~~l~~~p~~~~l~s~s---~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg---~~l~  373 (504)
                      .|.    ..|..-..+++.++++..+   .    .|.+.+|..+.+... .+.     +|......+.+..+.   .+|+
T Consensus       141 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ-~ie-----Ghaa~F~~~~~~g~~~~~~lf~  214 (327)
T d1utca2         141 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIE-----GHAASFAQFKMEGNAEESTLFC  214 (327)
T ss_dssp             CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-EEC-----CSEEEEEEECCTTCSSCEEEEE
T ss_pred             hcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc-ccc-----ceeeeeEEEEcCCCCCCceEEE
Confidence            443    4677777888888776543   2    467889998876432 222     332222222222111   1222


Q ss_pred             EE---eCCCcEEEEEcCCCc---e------eeeeeC---CCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeee
Q 010669          374 TG---TSEALVKIWDVKSQA---N------VAKFDG---HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE  437 (504)
Q Consensus       374 ~g---~~dg~I~iwd~~~~~---~------~~~~~~---~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~  437 (504)
                      .+   ...+.++|.++....   .      +..+-.   ..+-..++..|+.-..+..-+..| |.+||+.++.++..-.
T Consensus       215 fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR  294 (327)
T d1utca2         215 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  294 (327)
T ss_dssp             EEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee
Confidence            22   233688999886521   1      111111   234566788888777888888888 9999999999887666


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCcEEEE
Q 010669          438 SSDSETPTNSVDFDHSGSYLAVASADIRVY  467 (504)
Q Consensus       438 ~~~~~~~v~~i~~~~~g~~l~~~~~di~vw  467 (504)
                      ..  ...|...+-+.+..=+++...++.|+
T Consensus       295 Is--~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         295 IS--GETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             CC--SSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             cC--CCceEEeccCCCCceEEEECCCCeEE
Confidence            54  34444333343333333333343333

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=5.4e-05  Score=54.59  Aligned_cols=35  Identities=17%  Similarity=0.229  Sum_probs=30.5

Q ss_pred             ceEeCCCCeeeeHHHHHHHHHhcCCCCCCCCCCCC
Q 010669           13 PVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTM   47 (504)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   47 (504)
                      +++.+.+||+|-+.+|.+||+.|++||+++++...
T Consensus        51 ~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          51 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             CEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CeEEccccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            45555699999999999999999999999988654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.42  E-value=0.022  Score=51.92  Aligned_cols=174  Identities=9%  Similarity=0.072  Sum_probs=93.7

Q ss_pred             CCcEEEEeCCCCCCcceeEEeccC-----CcCeEEEEE--ccCCC-EEEEEe---CCCeEEEEECCCCe-EEEEeecCCC
Q 010669          286 DKTVRVWQGSEDGNYDCKHTLKDH-----TAEVQAVTV--HATNK-YFVTAS---LDNTWCFYDLSSGI-CLTQVSDAGT  353 (504)
Q Consensus       286 dg~i~iwd~~~~~~~~~~~~~~~h-----~~~v~~l~~--~p~~~-~l~s~s---~dg~i~iwd~~~~~-~~~~~~~~~~  353 (504)
                      .|.|.++|+...........+.+.     .-.-..+.+  .+++. +|++..   ...+|.+|++.... .+...... .
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v-~  145 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI-R  145 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE-C
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeec-C
Confidence            478888887764321111111111     112344444  34555 455543   34578888875332 22221111 1


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEeC---------------CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEe
Q 010669          354 DGRPEGYTSAAFHPDGLILGTGTS---------------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA  418 (504)
Q Consensus       354 ~~~~~~v~~~~~~pdg~~l~~g~~---------------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~  418 (504)
                      .......+.+++..+|.++++-..               -+...+|....++...... .-...+.|+++||+++|+.+.
T Consensus       146 ~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~  224 (340)
T d1v04a_         146 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAE  224 (340)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEE
T ss_pred             CccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEe
Confidence            123345789999999998888311               1223344443333222222 335689999999998888776


Q ss_pred             CCc--EEEEEcCCCcceeeeecCCCCCCeeEEEECC-CCCEEEEEe
Q 010669          419 HDG--VKLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVAS  461 (504)
Q Consensus       419 ~d~--v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~-~g~~l~~~~  461 (504)
                      ..+  |++|++..................-.+.+++ +|.+.+++.
T Consensus       225 t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         225 LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             CCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            553  9999987544332222212245677888886 455655553

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=3.6e-05  Score=49.23  Aligned_cols=47  Identities=23%  Similarity=0.320  Sum_probs=37.2

Q ss_pred             CccccCCCCCCC----ceEeCCCCeeeeHHHHHHHHHh-cCCCCCCCCCCCCC
Q 010669            1 MNCSISGEVPEE----PVVSKNSGLLFEKRLIERHILD-YGKCPVTGEPLTMD   48 (504)
Q Consensus         1 ~~c~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~   48 (504)
                      |=|+|+.+.+.+    +++. .+||+|.+.+|.+|++. +++||+.+++++.|
T Consensus         1 leCpICl~~~~~~~~~~~~~-~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~d   52 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPED   52 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSS-SSSCCCCHHHHHHHTTTSCCBCTTTCCBCSCC
T ss_pred             CCCcCCChhhhCCCceEEec-CCCCccchHHHHHHHhhcCCCCCccCCcCCCC
Confidence            459999886543    3444 49999999999999985 45799999998754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.32  E-value=0.07  Score=50.18  Aligned_cols=238  Identities=10%  Similarity=0.047  Sum_probs=123.9

Q ss_pred             eEEEEeccCCCEEEEEe-CC----CcEEEEcCCCCceEEEcccCccceeEEEEeeCCCEEEEEeCC--------------
Q 010669          226 IVSLDIHYSKDVIATGG-VD----TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD--------------  286 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~-~d----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~d--------------  286 (504)
                      +..+++||++++++.+- .+    ..++++|+.+++.+...-. ......++|.+|++.|+-...+              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            45667899999887542 23    3699999999987643211 1223568999999877654322              


Q ss_pred             --CcEEEEeCCCCCCcceeEEecc--CCcCeEEEEEccCCCEEEEEeC---CCe--EEEEECCCCeE-------EEEeec
Q 010669          287 --KTVRVWQGSEDGNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASL---DNT--WCFYDLSSGIC-------LTQVSD  350 (504)
Q Consensus       287 --g~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s~s~---dg~--i~iwd~~~~~~-------~~~~~~  350 (504)
                        ..|..|.+.+... .....+..  ....+..+..+.++++++....   ++.  +.+.|+.....       ...+..
T Consensus       206 ~~~~v~~h~lgt~~~-~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  284 (430)
T d1qfma1         206 LHQKLYYHVLGTDQS-EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (430)
T ss_dssp             CCCEEEEEETTSCGG-GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CcceEEEEECCCCcc-ccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence              2577777765421 22223332  2334667778889998765432   333  34445432210       011110


Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEe---CCCcEEEEEcCCCce--eeeee-CCCCCeEEEEEcCCCcEEE-EEeCCc--
Q 010669          351 AGTDGRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVKSQAN--VAKFD-GHVGAVTAISFSENGYYLA-TAAHDG--  421 (504)
Q Consensus       351 ~~~~~~~~~v~~~~~~pdg~~l~~g~---~dg~I~iwd~~~~~~--~~~~~-~~~~~i~~l~~s~~g~~l~-s~~~d~--  421 (504)
                          .....+..+. +.++.+++...   .++.|...++.....  ...+- .+...+..-.+...+.+|+ ....++  
T Consensus       285 ----~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~  359 (430)
T d1qfma1         285 ----NFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (430)
T ss_dssp             ----SSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             ----ccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence                1111222222 22333333332   346677777765432  23333 3444454434433444444 444553  


Q ss_pred             -EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEE--eCc--EEEEEeecc
Q 010669          422 -VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA--SAD--IRVYQVASV  472 (504)
Q Consensus       422 -v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~--~~d--i~vw~~~~~  472 (504)
                       |+++++..+.........  .+.+..+..+++...+...  +--  -.+|+++..
T Consensus       360 ~l~v~~~~~~~~~~~~~~~--~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~  413 (430)
T d1qfma1         360 TLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT  413 (430)
T ss_dssp             EEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred             EEEEEECCCCcEEEecCCC--CceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECC
Confidence             899999877654433322  3456666656665544433  222  556655443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.047  Score=47.65  Aligned_cols=173  Identities=14%  Similarity=0.056  Sum_probs=104.9

Q ss_pred             CcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCeE---EEEeecCCCCCCCCCeEE
Q 010669          287 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGIC---LTQVSDAGTDGRPEGYTS  362 (504)
Q Consensus       287 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~  362 (504)
                      ..|+-.++.+..   . ..+......+.+++|++..+.++... .++.|.-.++.....   ...+..    .....+..
T Consensus        10 ~~I~~~~l~~~~---~-~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~----~~~~~p~g   81 (266)
T d1ijqa1          10 HEVRKMTLDRSE---Y-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDG   81 (266)
T ss_dssp             SSEEEEETTSCC---C-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SSCSCCCE
T ss_pred             CeEEEEECCCCc---c-eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe----CCCCCcce
Confidence            358888887632   1 22223445678999999888777765 456677666654221   111111    11234678


Q ss_pred             EEECCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC--c-EEEEEcCCCcceeeeec
Q 010669          363 AAFHPDG-LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSFES  438 (504)
Q Consensus       363 ~~~~pdg-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d--~-v~vwd~~~~~~~~~~~~  438 (504)
                      +++.+.+ ++..+-...+.|.+.++........+.........++++|...+|+....+  + |.-.++.... ...+..
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~  160 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT  160 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eecccc
Confidence            8998744 455555567889999997665555455555678999999865555544332  3 7667765433 333332


Q ss_pred             CCCCCCeeEEEECCCCCEEEEEeCc---EEEEEe
Q 010669          439 SDSETPTNSVDFDHSGSYLAVASAD---IRVYQV  469 (504)
Q Consensus       439 ~~~~~~v~~i~~~~~g~~l~~~~~d---i~vw~~  469 (504)
                      . .......+++++.+..|+.+...   |...++
T Consensus       161 ~-~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~  193 (266)
T d1ijqa1         161 E-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (266)
T ss_dssp             S-SCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             c-ccceeeEEEeeccccEEEEecCCcCEEEEEEC
Confidence            2 13567899999998888887654   555554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.24  E-value=0.057  Score=52.88  Aligned_cols=155  Identities=13%  Similarity=0.081  Sum_probs=89.6

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCc----cceeEEEEeeCCCEEEEEe------CCCcEEEEeCCCCCCcceeE
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHS----KKVTSVKFVTEGDLFLTGS------ADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~s~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~  304 (504)
                      +..++.++.||.+.-.|..+|+.+.......    ..++.--...++ .++.+.      .+|.|+-+|..++.   .+-
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~---~~W  190 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGE---LKW  190 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCC---EEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCc---EEE
Confidence            3467778889999999999998876553211    112211111234 344444      36789999998863   222


Q ss_pred             EeccC-------------------------------------CcCe-EEEEEccCCCEEEEEeC----------------
Q 010669          305 TLKDH-------------------------------------TAEV-QAVTVHATNKYFVTASL----------------  330 (504)
Q Consensus       305 ~~~~h-------------------------------------~~~v-~~l~~~p~~~~l~s~s~----------------  330 (504)
                      .+...                                     .+.+ ...++.+....++.+..                
T Consensus       191 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~  270 (571)
T d2ad6a1         191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccc
Confidence            21100                                     1112 23455666666655543                


Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCCC----CCCeEEEEECCCCC---EEEEEeCCCcEEEEEcCCCceee
Q 010669          331 DNTWCFYDLSSGICLTQVSDAGTDGR----PEGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANVA  393 (504)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~v~~~~~~pdg~---~l~~g~~dg~I~iwd~~~~~~~~  393 (504)
                      ...+.-.|+++|+.+..+.....+..    ........+..+|.   .++.++.+|.+.++|..+++.+.
T Consensus       271 s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEee
Confidence            34677889999998877763211111    11222222333443   56778899999999999988764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.07  E-value=0.065  Score=49.20  Aligned_cols=153  Identities=15%  Similarity=0.151  Sum_probs=91.3

Q ss_pred             eeCCCEEEEEeCCC-----------cEEEEeCCCCCCcceeEEe-ccCCcCeEEEEEccCCCEEEEEeCC-CeEEEEECC
Q 010669          274 VTEGDLFLTGSADK-----------TVRVWQGSEDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLD-NTWCFYDLS  340 (504)
Q Consensus       274 s~~~~~l~s~s~dg-----------~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~d-g~i~iwd~~  340 (504)
                      ..+|+.++.|+.+.           .+.+||..++ .+...... ..|........+.+++.+++.|+.+ ..+.+||..
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC-CBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCC-cEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            34666666665321           3678999874 33332222 2333344566788899999988765 589999999


Q ss_pred             CCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC------CcEEEEEcCCCceee--eee-------CCC-----C
Q 010669          341 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE------ALVKIWDVKSQANVA--KFD-------GHV-----G  400 (504)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d------g~I~iwd~~~~~~~~--~~~-------~~~-----~  400 (504)
                      +..-...-.   . ........++..+||++++.|+.+      ..+.+||..+.+-..  ...       .+.     .
T Consensus       107 ~~~w~~~~~---~-~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  182 (387)
T d1k3ia3         107 SDSWIPGPD---M-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  182 (387)
T ss_dssp             GTEEEECCC---C-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             cCccccccc---c-cccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecc
Confidence            876543221   1 222345678888899999998753      368999987753211  100       000     0


Q ss_pred             CeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCc
Q 010669          401 AVTAISFSENGYYLATAAHDG-VKLWDLRKLK  431 (504)
Q Consensus       401 ~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~  431 (504)
                      .-..+...++|..++.++..+ +.++|..+..
T Consensus       183 ~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         183 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             ceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence            111233345677777776666 7777776654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.05  E-value=0.081  Score=51.75  Aligned_cols=135  Identities=12%  Similarity=0.130  Sum_probs=80.6

Q ss_pred             EEEEEeCCCeEEEEECCCCeEEEEeecCCCC--------C---------------CC-----------CCeEEEEECCCC
Q 010669          324 YFVTASLDNTWCFYDLSSGICLTQVSDAGTD--------G---------------RP-----------EGYTSAAFHPDG  369 (504)
Q Consensus       324 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--------~---------------~~-----------~~v~~~~~~pdg  369 (504)
                      .++.++.+|.+.++|..+++.+.........        .               ..           ..-...+++|+.
T Consensus       318 ~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~  397 (571)
T d2ad6a1         318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             ceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCC
Confidence            5677889999999999999887543211000        0               00           000135677776


Q ss_pred             CEEEEEeCC-------------------------------------CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCc
Q 010669          370 LILGTGTSE-------------------------------------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY  412 (504)
Q Consensus       370 ~~l~~g~~d-------------------------------------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~  412 (504)
                      .++++...+                                     |.|.-+|+.+++.+-+...- .+..+-.++-.+.
T Consensus       398 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~Tagg  476 (571)
T d2ad6a1         398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGG  476 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTT
T ss_pred             ceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCC-CCCCcceeEecCC
Confidence            666654332                                     45777788888776555421 1111111122455


Q ss_pred             EEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC-CEEEEE
Q 010669          413 YLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG-SYLAVA  460 (504)
Q Consensus       413 ~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g-~~l~~~  460 (504)
                      ++++|+.|+ ++.+|.++++.+-.+..... ..-.-+.|..+| +|+++.
T Consensus       477 lVf~G~~dg~l~A~Da~tGe~lW~~~l~~~-~~a~P~ty~~dGkqYi~v~  525 (571)
T d2ad6a1         477 LVWYATLDGYLKALDNKDGKELWNFKMPSG-GIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTEEEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEECCCC-ceecceEEEECCEEEEEEE
Confidence            777889998 99999999999988876532 112225555577 466543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.70  E-value=0.17  Score=44.11  Aligned_cols=220  Identities=10%  Similarity=0.104  Sum_probs=131.5

Q ss_pred             CCcEEEEcCCCCce-EEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeCCCCCCcceeEEeccCCcCeEEEEEccCC
Q 010669          244 DTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN  322 (504)
Q Consensus       244 dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  322 (504)
                      ...|.|.|+.+... .+.--    .--+.-.+|..+.|+.-+ ..++.++|+++.   ..+..+. ....|.--.|-. .
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi----~AdsAIMhP~~~IiALra-g~~LQiFnletK---~klks~~-~~e~VvfWkWis-~  113 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMK---SKMKAHT-MTDDVTFWKWIS-L  113 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC----CCSEEEECSSSSEEEEEE-TTEEEEEETTTT---EEEEEEE-CSSCCCEEEESS-S
T ss_pred             CceEEEEECCCCCcceeccc----chhhhhcCCCCcEEEEec-CCeEEEEehhHh---hhhceEE-cCCCcEEEEecC-C
Confidence            34788889876543 22211    123345578888777655 458999999885   4444443 335677777763 4


Q ss_pred             CEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCCCCCCeEEEEECCCCCEEEEEe-------CCCcEEEEEcCCCceeee
Q 010669          323 KYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-------SEALVKIWDVKSQANVAK  394 (504)
Q Consensus       323 ~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~-------~dg~I~iwd~~~~~~~~~  394 (504)
                      +.|+..+ +..|+-|+++... +.+.+..... -....|..-..++++++++..+       -.|.+.+|.... +.-..
T Consensus       114 ~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~-L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~  190 (327)
T d1utca2         114 NTVALVT-DNAVYHWSMEGESQPVKMFDRHSS-LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQP  190 (327)
T ss_dssp             SEEEEEC-SSEEEEEESSSSCCCEEEEECCGG-GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEE
T ss_pred             CEEEEEc-CCceEEEcccCCCCchhhhhhccc-ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCcc
Confidence            4555544 4579999996533 4444433221 2346788888999999887643       236788998754 34556


Q ss_pred             eeCCCCCeEEEEEcCCC---cEEEEEeC--C-c-EEEEEcCCCcc----e--e--eeecC--CCCCCeeEEEECCCCCEE
Q 010669          395 FDGHVGAVTAISFSENG---YYLATAAH--D-G-VKLWDLRKLKN----F--R--SFESS--DSETPTNSVDFDHSGSYL  457 (504)
Q Consensus       395 ~~~~~~~i~~l~~s~~g---~~l~s~~~--d-~-v~vwd~~~~~~----~--~--~~~~~--~~~~~v~~i~~~~~g~~l  457 (504)
                      +.||.+....+.+..+.   ..++.+..  . + +.+.++.....    .  +  .+..+  .......++..++.-..+
T Consensus       191 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygii  270 (327)
T d1utca2         191 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV  270 (327)
T ss_dssp             ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEE
T ss_pred             ccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEE
Confidence            77776655555443221   23333322  2 3 88888865221    1  1  11111  113455678888887777


Q ss_pred             EEEeCc--EEEEEeeccCccceeEE
Q 010669          458 AVASAD--IRVYQVASVKADWNCIK  480 (504)
Q Consensus       458 ~~~~~d--i~vw~~~~~~~~~~~i~  480 (504)
                      +..+.-  +++||+    .++.++.
T Consensus       271 yviTK~G~i~lyDl----eTgt~i~  291 (327)
T d1utca2         271 FLITKYGYIHLYDL----ETGTCIY  291 (327)
T ss_dssp             EEEETTSEEEEEET----TTCCEEE
T ss_pred             EEEecCcEEEEEEc----ccccEEE
Confidence            777766  999998    4555543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.61  E-value=0.23  Score=44.74  Aligned_cols=194  Identities=13%  Similarity=0.238  Sum_probs=114.6

Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEee----CCC--EEEEEe-C-C--CcEEEEeCCCCCCcce
Q 010669          233 YSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT----EGD--LFLTGS-A-D--KTVRVWQGSEDGNYDC  302 (504)
Q Consensus       233 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~----~~~--~l~s~s-~-d--g~i~iwd~~~~~~~~~  302 (504)
                      |+..+++....++-|++||+. |+.+..+.  .+.++.|..-.    .++  -++.++ . +  .+|.+|.+....  ..
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~--~~  112 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GT  112 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT--TE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc--cc
Confidence            455677777777779999985 88887775  35566665432    222  244444 2 2  367788775322  12


Q ss_pred             eEEecc-------CCcCeEEEEE--ccC-CC-EEEEEeCCCeEEEEECC---CCe----EEEEeecCCCCCCCCCeEEEE
Q 010669          303 KHTLKD-------HTAEVQAVTV--HAT-NK-YFVTASLDNTWCFYDLS---SGI----CLTQVSDAGTDGRPEGYTSAA  364 (504)
Q Consensus       303 ~~~~~~-------h~~~v~~l~~--~p~-~~-~l~s~s~dg~i~iwd~~---~~~----~~~~~~~~~~~~~~~~v~~~~  364 (504)
                      +..+..       -...+..+|+  ++. +. ++++...+|.+..|.+.   .+.    .+..+.      ....+..|.
T Consensus       113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~------~~~q~EGCV  186 (353)
T d1h6la_         113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK------MNSQTEGMA  186 (353)
T ss_dssp             EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE------CSSCEEEEE
T ss_pred             cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC------CCCccceEE
Confidence            222221       1124667777  554 44 56677778988888663   232    233332      235688999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEcCCC-----ceeeeeeC--CCCCeEEEEEcC----CCcEEEEEeCCc-EEEEEcCCC-c
Q 010669          365 FHPDGLILGTGTSEALVKIWDVKSQ-----ANVAKFDG--HVGAVTAISFSE----NGYYLATAAHDG-VKLWDLRKL-K  431 (504)
Q Consensus       365 ~~pdg~~l~~g~~dg~I~iwd~~~~-----~~~~~~~~--~~~~i~~l~~s~----~g~~l~s~~~d~-v~vwd~~~~-~  431 (504)
                      +.+....|+.+-++.-|+.++....     ..+....+  ....+..|+.-.    +|++|+|.-.++ ..+||.... .
T Consensus       187 vDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~  266 (353)
T d1h6la_         187 ADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNK  266 (353)
T ss_dssp             EETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred             EeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcc
Confidence            9999889999988877777765421     22222222  345777887653    244444443344 999998763 4


Q ss_pred             ceeeee
Q 010669          432 NFRSFE  437 (504)
Q Consensus       432 ~~~~~~  437 (504)
                      .+..|.
T Consensus       267 ~~g~F~  272 (353)
T d1h6la_         267 YVADFQ  272 (353)
T ss_dssp             EEEEEE
T ss_pred             ccceEE
Confidence            454554

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.55  E-value=0.41  Score=46.74  Aligned_cols=80  Identities=16%  Similarity=0.163  Sum_probs=49.5

Q ss_pred             CcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC-CE
Q 010669          379 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG-SY  456 (504)
Q Consensus       379 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g-~~  456 (504)
                      |.|.-||+.+++.+-... +..++..-.++..|.+++.|+.|+ ++.+|.++++.+-++..... ..-.-+.|..+| +|
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~-~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG-AIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCC-cccCCeEEEECCEEE
Confidence            457777888777665443 112222112233567788899998 99999999999988876532 111224455566 46


Q ss_pred             EEEE
Q 010669          457 LAVA  460 (504)
Q Consensus       457 l~~~  460 (504)
                      +++.
T Consensus       531 vav~  534 (596)
T d1w6sa_         531 VAIY  534 (596)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6643

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.065  Score=49.09  Aligned_cols=180  Identities=12%  Similarity=0.037  Sum_probs=101.2

Q ss_pred             eEEEEeccCCCEEEEEeCCCcEEEEcCC-----------CCceEEEcccCccceeEEEEeeCCCEEEEEeCCCcEEEEeC
Q 010669          226 IVSLDIHYSKDVIATGGVDTNAVLFDRP-----------SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG  294 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~dg~i~vwd~~-----------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~s~dg~i~iwd~  294 (504)
                      ..-++++....++++|+.++ +.|....           ........  .-..|..++|+.  +.|+.. .++.+..++.
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~--d~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHG--DQVLVS-TRNALYSLDL  112 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEET--TEEEEE-ESSEEEEEES
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeC--CEEEEE-eCCCEEEEEe
Confidence            45678888788888888776 5565421           11111111  112588899964  345444 4456788877


Q ss_pred             CCCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE
Q 010669          295 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT  374 (504)
Q Consensus       295 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~  374 (504)
                      ..-..   ......-..++..+.++|  ..++....+|.+.++++..++............-...+.+++|++.|..+++
T Consensus       113 ~~l~~---~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         113 EELSE---FRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             SSTTC---EEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             ecccc---ccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence            65422   222223345678888776  4577777899999999988865433211000011245778888888877777


Q ss_pred             EeCCCcEEE-EEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEE
Q 010669          375 GTSEALVKI-WDVKSQANVAKFDGHVGAVTAISFSENGYYLATA  417 (504)
Q Consensus       375 g~~dg~I~i-wd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~  417 (504)
                      +..++ ..+ -++.....+.........|.+|.|-.+..++++-
T Consensus       188 ~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         188 WRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            64332 111 1111111111111133468899998777777655

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.0016  Score=49.23  Aligned_cols=45  Identities=13%  Similarity=0.038  Sum_probs=34.1

Q ss_pred             ccccCCCCCCC-----------------ceEeCCCCeeeeHHHHHHHHHhc-----CCCCCCCCCCC
Q 010669            2 NCSISGEVPEE-----------------PVVSKNSGLLFEKRLIERHILDY-----GKCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~   46 (504)
                      .|+|+.+.+.+                 .++-..+||+|-+.+|.+|++..     .+||+++..+.
T Consensus        27 ~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             cccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            38888876543                 23344599999999999999853     36999997764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.31  E-value=0.56  Score=45.71  Aligned_cols=155  Identities=14%  Similarity=0.077  Sum_probs=91.5

Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEcccCc----cceeEEEEeeCCCEEEEEeC------CCcEEEEeCCCCCCcceeEE
Q 010669          236 DVIATGGVDTNAVLFDRPSGQIVTTLSGHS----KKVTSVKFVTEGDLFLTGSA------DKTVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~  305 (504)
                      .+++.++.|+.|.-.|..+|+.+..+....    ..++.--.- .+..++.+..      .|.|+-+|..++.   .+-.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~---~~W~  197 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGE---QVWR  197 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCC---EEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCc---EEEE
Confidence            478889999999999999999988764211    111111011 2334555543      4889999998863   3222


Q ss_pred             eccC-------------------------------------CcCe-EEEEEccCCCEEEEEeC----------------C
Q 010669          306 LKDH-------------------------------------TAEV-QAVTVHATNKYFVTASL----------------D  331 (504)
Q Consensus       306 ~~~h-------------------------------------~~~v-~~l~~~p~~~~l~s~s~----------------d  331 (504)
                      +...                                     ...+ ..+.+.+...+++.+..                .
T Consensus       198 ~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys  277 (596)
T d1w6sa_         198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWT  277 (596)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred             eeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccc
Confidence            2100                                     0111 23455666666665533                2


Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCC----CCCeEEEE-ECCCC---CEEEEEeCCCcEEEEEcCCCceeee
Q 010669          332 NTWCFYDLSSGICLTQVSDAGTDGR----PEGYTSAA-FHPDG---LILGTGTSEALVKIWDVKSQANVAK  394 (504)
Q Consensus       332 g~i~iwd~~~~~~~~~~~~~~~~~~----~~~v~~~~-~~pdg---~~l~~g~~dg~I~iwd~~~~~~~~~  394 (504)
                      ..|.-.|+++++....+.....+..    ......+. ...+|   ..++....+|.+.++|..+++.+..
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence            3577889999998876653211111    11222222 23344   3677788999999999999887643

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.27  E-value=0.18  Score=48.96  Aligned_cols=135  Identities=15%  Similarity=0.219  Sum_probs=84.0

Q ss_pred             EEEEEeCCCeEEEEECCCCeEEEEeecCCCC-------------------CC------------CCCeEEEEECCCCCEE
Q 010669          324 YFVTASLDNTWCFYDLSSGICLTQVSDAGTD-------------------GR------------PEGYTSAAFHPDGLIL  372 (504)
Q Consensus       324 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------------------~~------------~~~v~~~~~~pdg~~l  372 (504)
                      .++.++.+|.+.++|..+++.+.........                   ..            ...-...+++|+..++
T Consensus       316 ~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~  395 (560)
T d1kv9a2         316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV  395 (560)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCee
Confidence            6777889999999999999887654321100                   00            0001245677776666


Q ss_pred             EEEeC------------------------------------CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEE
Q 010669          373 GTGTS------------------------------------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT  416 (504)
Q Consensus       373 ~~g~~------------------------------------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s  416 (504)
                      ++...                                    .|.|.-||+.+++.+-.+.. ..+...-.++-.|.+++.
T Consensus       396 yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~  474 (560)
T d1kv9a2         396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQ  474 (560)
T ss_dssp             EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEE
T ss_pred             ecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEE
Confidence            65432                                    24677888888887766542 122222122335667888


Q ss_pred             EeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC-CEEEEE
Q 010669          417 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG-SYLAVA  460 (504)
Q Consensus       417 ~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g-~~l~~~  460 (504)
                      |+.|+ ++.+|..+++.+-++..... ..-.-+.|..+| +||++.
T Consensus       475 G~~dg~l~A~Da~tGe~LW~~~l~~~-~~~~P~ty~~dGkqyv~v~  519 (560)
T d1kv9a2         475 GTAAGQMHAYSADKGEALWQFEAQSG-IVAAPMTFELAGRQYVAIM  519 (560)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTEEEEEEE
T ss_pred             ECCCCcEEEEECCCCcEeEEEECCCC-ccccCEEEEECCEEEEEEE
Confidence            88898 99999999999988887532 111225555677 466544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.24  E-value=0.17  Score=45.63  Aligned_cols=169  Identities=15%  Similarity=0.264  Sum_probs=99.9

Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEE------ECCCCCEEEEEeC--C--CcEEEEEcCC-
Q 010669          320 ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA------FHPDGLILGTGTS--E--ALVKIWDVKS-  388 (504)
Q Consensus       320 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~------~~pdg~~l~~g~~--d--g~I~iwd~~~-  388 (504)
                      |+..+++.....+-|++||+. |+.+..+..       ..++.+.      +.....-+++++.  +  ..|.+|.+.. 
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~-------Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~  109 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK  109 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS-------SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETT
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc-------CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCc
Confidence            345677777777789999996 666666532       2344443      2233333555542  2  3577887742 


Q ss_pred             CceeeeeeCC-------CCCeEEEEE--cC-CCc-EEEEEeCCc-EEEEEcC---CC----cceeeeecCCCCCCeeEEE
Q 010669          389 QANVAKFDGH-------VGAVTAISF--SE-NGY-YLATAAHDG-VKLWDLR---KL----KNFRSFESSDSETPTNSVD  449 (504)
Q Consensus       389 ~~~~~~~~~~-------~~~i~~l~~--s~-~g~-~l~s~~~d~-v~vwd~~---~~----~~~~~~~~~~~~~~v~~i~  449 (504)
                      ...+..+...       ...+..+|+  ++ +|. ++++...++ +..|.+.   .+    +.++.+..   ...+..|.
T Consensus       110 ~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~---~~q~EGCV  186 (353)
T d1h6la_         110 NGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM---NSQTEGMA  186 (353)
T ss_dssp             TTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC---SSCEEEEE
T ss_pred             ccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC---CCccceEE
Confidence            2233333211       124667777  55 354 445555556 8777663   22    23445554   45789999


Q ss_pred             ECCCCCEEEEEeCcEEEEEeecc---CccceeEEEccCCCCCCceeEEEEeec
Q 010669          450 FDHSGSYLAVASADIRVYQVASV---KADWNCIKTFPDLSGTGAASFLFLFVL  499 (504)
Q Consensus       450 ~~~~g~~l~~~~~di~vw~~~~~---~~~~~~i~~~~~h~~~~~v~~l~~~~~  499 (504)
                      +++....|+.+-+++.+|.+...   ......+....+-.-.+.+..|+++..
T Consensus       187 vDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~  239 (353)
T d1h6la_         187 ADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYA  239 (353)
T ss_dssp             EETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEEC
T ss_pred             EeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEc
Confidence            99999999999988777876432   122344444433113678888888764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.11  E-value=0.69  Score=44.84  Aligned_cols=156  Identities=10%  Similarity=0.079  Sum_probs=84.8

Q ss_pred             CEEEEEeCCCcEEEEcCCCCceEEEcccC--c-cceeEEEEee--CCCEEEEEe------CCCcEEEEeCCCCCCcceeE
Q 010669          236 DVIATGGVDTNAVLFDRPSGQIVTTLSGH--S-KKVTSVKFVT--EGDLFLTGS------ADKTVRVWQGSEDGNYDCKH  304 (504)
Q Consensus       236 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~-~~v~~l~~s~--~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~  304 (504)
                      ..++.++.|+.+.-.|..+|+.+......  . ..+. +.-.|  -+..+++++      ..|.|..+|..++.   .+-
T Consensus       129 ~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~---~~W  204 (573)
T d1kb0a2         129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGE---RKW  204 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC---EEE
T ss_pred             CcEEEEecccceeeeccccccceecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCcc---cee
Confidence            35667788899998999999887654321  1 1111 00011  133455543      24679999988863   222


Q ss_pred             Eecc-------------------------------CCcCe-EEEEEccCCCEEEEEeC-------------------CCe
Q 010669          305 TLKD-------------------------------HTAEV-QAVTVHATNKYFVTASL-------------------DNT  333 (504)
Q Consensus       305 ~~~~-------------------------------h~~~v-~~l~~~p~~~~l~s~s~-------------------dg~  333 (504)
                      .+..                               ..+.+ ....+.+....++.+..                   ...
T Consensus       205 ~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~s  284 (573)
T d1kb0a2         205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (573)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             eeeeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccce
Confidence            2110                               00112 12445555555554321                   124


Q ss_pred             EEEEECCCCeEEEEeecCCCCC----CCCCeEEEEECCCC---CEEEEEeCCCcEEEEEcCCCceeeee
Q 010669          334 WCFYDLSSGICLTQVSDAGTDG----RPEGYTSAAFHPDG---LILGTGTSEALVKIWDVKSQANVAKF  395 (504)
Q Consensus       334 i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~pdg---~~l~~g~~dg~I~iwd~~~~~~~~~~  395 (504)
                      |.-.|+++++............    ............++   ..++.++.+|.+.++|..+++.+...
T Consensus       285 vvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~  353 (573)
T d1kb0a2         285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK  353 (573)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccc
Confidence            6677888888776654321110    11122222223333   46777889999999999999876543

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=96.07  E-value=0.0017  Score=42.52  Aligned_cols=45  Identities=11%  Similarity=0.079  Sum_probs=36.8

Q ss_pred             ccccCCCCCCCceEeCC----CCeeeeHHHHHHHHHhcC--CCCCCCCCCC
Q 010669            2 NCSISGEVPEEPVVSKN----SGLLFEKRLIERHILDYG--KCPVTGEPLT   46 (504)
Q Consensus         2 ~c~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~p~~~~~~~   46 (504)
                      +|.|..+...++.+.|-    ++|.|-+.+|++|+...+  +||+.+.+.+
T Consensus         8 ~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           8 VCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             EETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            69999888888877753    369999999999998655  6999998754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.95  E-value=0.8  Score=44.22  Aligned_cols=240  Identities=13%  Similarity=0.132  Sum_probs=133.2

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceEEEcccCcc-ceeEEEEee--CCCEEEEEe------CCCcEEEEeCCCCCCcceeEE
Q 010669          235 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK-KVTSVKFVT--EGDLFLTGS------ADKTVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       235 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~s~--~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~  305 (504)
                      +..++.+..++.|.-.|..+|+.+.....+.. .-..+.-.|  .+..++.+.      ..|.|.-+|..++.   .+-.
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~---~~W~  193 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK---LAWR  193 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC---EEEE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCce---EEee
Confidence            45677888899999999999998876653211 000110011  122344433      23678888888863   2222


Q ss_pred             ec---cC---------------------------CcCe-EEEEEccCCCEEEEEeC-------------------CCeEE
Q 010669          306 LK---DH---------------------------TAEV-QAVTVHATNKYFVTASL-------------------DNTWC  335 (504)
Q Consensus       306 ~~---~h---------------------------~~~v-~~l~~~p~~~~l~s~s~-------------------dg~i~  335 (504)
                      +.   ..                           ...+ ..+.+.+...+++.+..                   ...|.
T Consensus       194 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~siv  273 (560)
T d1kv9a2         194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (560)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             eeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeE
Confidence            21   00                           1112 12455666665554321                   23577


Q ss_pred             EEECCCCeEEEEeecCCCCC----CCCCeEEEEECCCC---CEEEEEeCCCcEEEEEcCCCceeeeeeCCC---------
Q 010669          336 FYDLSSGICLTQVSDAGTDG----RPEGYTSAAFHPDG---LILGTGTSEALVKIWDVKSQANVAKFDGHV---------  399 (504)
Q Consensus       336 iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~pdg---~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~---------  399 (504)
                      -.|+++++....+.....+.    ......-+.+..+|   ..++.++.+|.+.++|..+++.+.....-.         
T Consensus       274 Ald~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~  353 (560)
T d1kv9a2         274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL  353 (560)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred             EecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccCh
Confidence            77999998877665321111    01111222222344   367778899999999999998764432100         


Q ss_pred             -------------------------C--CeEEEEEcCCCcEEEEEeCC--------------------------------
Q 010669          400 -------------------------G--AVTAISFSENGYYLATAAHD--------------------------------  420 (504)
Q Consensus       400 -------------------------~--~i~~l~~s~~g~~l~s~~~d--------------------------------  420 (504)
                                               +  .-...+++|+..+++....+                                
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  433 (560)
T d1kv9a2         354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA  433 (560)
T ss_dssp             TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred             hhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCC
Confidence                                     0  01134566666555544321                                


Q ss_pred             ----c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEEEEEeCc--EEEEEeeccCccceeEEEccC
Q 010669          421 ----G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       421 ----~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l~~~~~d--i~vw~~~~~~~~~~~i~~~~~  484 (504)
                          + |.-||+.+++.+-.+....   ...+-.+...|.++++|+.|  ++.||.    .+++.+-+++-
T Consensus       434 ~~~~G~l~A~D~~tGk~~W~~~~~~---~~~gg~l~TagglVF~G~~dg~l~A~Da----~tGe~LW~~~l  497 (560)
T d1kv9a2         434 AVVSGALLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSA----DKGEALWQFEA  497 (560)
T ss_dssp             GGCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEET----TTCCEEEEEEC
T ss_pred             cccccceEEEeCCCCeEeeeccCCC---CCCCceeEECCCEEEEECCCCcEEEEEC----CCCcEeEEEEC
Confidence                3 6778888888777665532   22222233456788888877  888887    55666655543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.46  Score=41.03  Aligned_cols=224  Identities=9%  Similarity=0.124  Sum_probs=102.1

Q ss_pred             cEEEEcCCCCceEEE--cccCccceeEEEEeeCCCEEEEEeC---------CCcEEEEeCCCCCCcceeEEeccCCcCeE
Q 010669          246 NAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSA---------DKTVRVWQGSEDGNYDCKHTLKDHTAEVQ  314 (504)
Q Consensus       246 ~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  314 (504)
                      .+.+||..+++-...  +......- +++ .-++.+++.|+.         -..+.+||..+. .+.....+......-.
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~-~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGL-AGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-QWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTT-EEEECCCCSSCCBTCE
T ss_pred             eEEEEECCCCeEEECCCCCCcccee-EEE-EECCEEEEEeCcccCCCCccccchhhhcccccc-cccccccccceeccee
Confidence            577999887653222  22111111 222 225666666653         135677887653 2222221111111111


Q ss_pred             EEEEccCCCEEEEEeCCC-----eEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEE
Q 010669          315 AVTVHATNKYFVTASLDN-----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----ALVKIW  384 (504)
Q Consensus       315 ~l~~~p~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d-----g~I~iw  384 (504)
                      ++.+  +++.++.++.++     .+..+|..+........   ....... .++... ++.+++.|+.+     ..+..|
T Consensus        97 ~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~-~~~~~~-~~~~~~~GG~~~~~~~~~~~~~  169 (288)
T d1zgka1          97 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP---MLTRRIG-VGVAVL-NRLLYAVGGFDGTNRLNSAECY  169 (288)
T ss_dssp             EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC---CSSCCBS-CEEEEE-TTEEEEECCBCSSCBCCCEEEE
T ss_pred             cccc--ceeeEEecceecccccceeeeeccccCccccccc---ccccccc-ceeeee-eecceEecCcccccccceEEEe
Confidence            2222  566666555433     34557777665432221   1111111 222222 34556666543     357888


Q ss_pred             EcCCCceeeeee-CCCCCeEEEEEcCCCcEEEEEeCC-----c-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCCCEE
Q 010669          385 DVKSQANVAKFD-GHVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL  457 (504)
Q Consensus       385 d~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~s~~~d-----~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~l  457 (504)
                      |..+.+-...-. .....-.++... ++.+++.|+.+     . ...+|..+.+....-.... ...-.+++. .+++++
T Consensus       170 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~r~~~~~~~-~~~~l~  246 (288)
T d1zgka1         170 YPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGITV-HQGRIY  246 (288)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE-ETTEEE
T ss_pred             eccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccC-cccceEEEE-ECCEEE
Confidence            876654221111 011111222222 45566665543     2 6778877654332211111 111123333 257777


Q ss_pred             EEEeCc-------EEEEEeeccCccceeEEEccC
Q 010669          458 AVASAD-------IRVYQVASVKADWNCIKTFPD  484 (504)
Q Consensus       458 ~~~~~d-------i~vw~~~~~~~~~~~i~~~~~  484 (504)
                      +.|+.+       +.+||+  .+..|+.+..++.
T Consensus       247 v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p~  278 (288)
T d1zgka1         247 VLGGYDGHTFLDSVECYDP--DTDTWSEVTRMTS  278 (288)
T ss_dssp             EECCBCSSCBCCEEEEEET--TTTEEEEEEECSS
T ss_pred             EEecCCCCeecceEEEEEC--CCCEEEECCCCCC
Confidence            777643       556665  4468999988743

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.74  E-value=0.42  Score=46.57  Aligned_cols=81  Identities=21%  Similarity=0.332  Sum_probs=54.7

Q ss_pred             CCcEEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCCc-EEEEEcCCCcceeeeecCCCCCCeeEEEECCCC-C
Q 010669          378 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG-S  455 (504)
Q Consensus       378 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~~v~~i~~~~~g-~  455 (504)
                      .|.|.-+|+.+++.+-.+..+. ++..-.++..|.++++|+.|+ ++.||..+++.+-++..... ..-.-+.|..+| +
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~-~~~~P~ty~~~G~q  542 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG-IVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCC-ccccCEEEEECCEE
Confidence            3678888999998877765332 222212234667888899998 99999999999998887532 112225666778 5


Q ss_pred             EEEEE
Q 010669          456 YLAVA  460 (504)
Q Consensus       456 ~l~~~  460 (504)
                      |+++.
T Consensus       543 Yv~i~  547 (582)
T d1flga_         543 YLGVT  547 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.69  E-value=0.27  Score=44.29  Aligned_cols=187  Identities=13%  Similarity=0.127  Sum_probs=105.0

Q ss_pred             eEEEEeccCCCEEEEEeC------------CCcEEEEcCCCCce-EEEcc--cC-----ccceeEEEEe--eCCC-EEEE
Q 010669          226 IVSLDIHYSKDVIATGGV------------DTNAVLFDRPSGQI-VTTLS--GH-----SKKVTSVKFV--TEGD-LFLT  282 (504)
Q Consensus       226 I~~~~~s~~~~~l~sg~~------------dg~i~vwd~~~~~~-~~~~~--~h-----~~~v~~l~~s--~~~~-~l~s  282 (504)
                      --.+...|+|..+++++.            .|.|.++|+.+.+. ...+.  +.     .-....+.+.  .++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            346777888887666542            48899999876532 22221  11     0123444442  3454 3444


Q ss_pred             Ee---CCCcEEEEeCCCCCC-cceeEEecc-CCcCeEEEEEccCCCEEEEEeC---------------CCeEEEEECCCC
Q 010669          283 GS---ADKTVRVWQGSEDGN-YDCKHTLKD-HTAEVQAVTVHATNKYFVTASL---------------DNTWCFYDLSSG  342 (504)
Q Consensus       283 ~s---~dg~i~iwd~~~~~~-~~~~~~~~~-h~~~v~~l~~~p~~~~l~s~s~---------------dg~i~iwd~~~~  342 (504)
                      ..   ...+|-+|++...+. ......+.. .....+++.+..++.+++|-..               -+...+|..+.+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            42   456788888765432 222223322 2245788999888888887321               122334444444


Q ss_pred             eEEEEeecCCCCCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEEcCCCceeeee--eCCCCCeEEEEEcC-CCcEEEEEe
Q 010669          343 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEALVKIWDVKSQANVAKF--DGHVGAVTAISFSE-NGYYLATAA  418 (504)
Q Consensus       343 ~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g-~~dg~I~iwd~~~~~~~~~~--~~~~~~i~~l~~s~-~g~~l~s~~  418 (504)
                      ........      -...+.++++||+++|+++ +..+.|++|++.....+...  ..-.+..-.+.+.+ +|.+.+++.
T Consensus       197 ~~~~~~~~------l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         197 DVRVVAEG------FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             CEEEEEEE------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             ceEEEcCC------CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            33222221      1357899999999877655 56788999998754332221  12345677888875 566665554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.60  E-value=0.1  Score=51.12  Aligned_cols=81  Identities=22%  Similarity=0.289  Sum_probs=54.1

Q ss_pred             CCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCC-eEEEEEcC
Q 010669          331 DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGA-VTAISFSE  409 (504)
Q Consensus       331 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~-i~~l~~s~  409 (504)
                      .|.|.-+|+.+++..-......      ++..-.+...|.++++|+.||.++.||.++|+.+-+++-.... -.-+.|..
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~------p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~  538 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL------PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS------CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC------CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEE
Confidence            3678889999998887776321      1221122345778888999999999999999999888642211 11245556


Q ss_pred             CCc-EEEEE
Q 010669          410 NGY-YLATA  417 (504)
Q Consensus       410 ~g~-~l~s~  417 (504)
                      +|+ |++..
T Consensus       539 ~G~qYv~i~  547 (582)
T d1flga_         539 DGEQYLGVT  547 (582)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            884 55543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.27  E-value=0.54  Score=45.60  Aligned_cols=81  Identities=12%  Similarity=0.221  Sum_probs=51.0

Q ss_pred             CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeCCCCCe-EEEEEcCC
Q 010669          332 NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAV-TAISFSEN  410 (504)
Q Consensus       332 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~  410 (504)
                      |.+.-||+.+++.+-.......      ...-.+.-.|.++++|+.||.++.||.++|+.+-++....+.. .-+.|..+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p------~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~  530 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSP------WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVD  530 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             ccEEEeCCCCCceEeeecCCCC------CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEEC
Confidence            3577788888888777653211      1111223357788899999999999999999998886422111 11344457


Q ss_pred             Cc-EEEEEe
Q 010669          411 GY-YLATAA  418 (504)
Q Consensus       411 g~-~l~s~~  418 (504)
                      |+ |++..+
T Consensus       531 GkQYv~v~~  539 (573)
T d1kb0a2         531 GRQYVSVAV  539 (573)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            75 444433

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.27  E-value=1.2  Score=41.55  Aligned_cols=53  Identities=9%  Similarity=0.053  Sum_probs=38.5

Q ss_pred             CCeEEEEeccCCCEEEEEeCCCcEEEEcCCCCceE--EEcc------cCccceeEEEEeeC
Q 010669          224 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV--TTLS------GHSKKVTSVKFVTE  276 (504)
Q Consensus       224 ~~I~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~------~h~~~v~~l~~s~~  276 (504)
                      ..-++|+|.|+|+++++--..|.|++++..+++..  ..+.      .-.+....|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            35679999999999888756799999987776542  2221      12355789999984

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.21  E-value=1.2  Score=41.23  Aligned_cols=193  Identities=12%  Similarity=0.153  Sum_probs=100.4

Q ss_pred             ceeEEEEeeCCCEEEEE-eCC----CcEEEEeCCCCCCccee-EEeccCCcCeEEEEEccCCCEEEEEeCC---------
Q 010669          267 KVTSVKFVTEGDLFLTG-SAD----KTVRVWQGSEDGNYDCK-HTLKDHTAEVQAVTVHATNKYFVTASLD---------  331 (504)
Q Consensus       267 ~v~~l~~s~~~~~l~s~-s~d----g~i~iwd~~~~~~~~~~-~~~~~h~~~v~~l~~~p~~~~l~s~s~d---------  331 (504)
                      .+..++++|++++++.+ +.+    ..|+++|+.++.   .+ ..+.  ......+.|.++++.|+....+         
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~---~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK---ELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE---EEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcce---ecccccc--cccccceEEcCCCCEEEEEEeccccCccccc
Confidence            34556789999987643 333    378999999863   22 2221  1122568899999987765432         


Q ss_pred             -------CeEEEEECCCCeEE--EEeecCCCCCCCCCeEEEEECCCCCEEEEEeC---CCc--EEEEEcCCCce------
Q 010669          332 -------NTWCFYDLSSGICL--TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EAL--VKIWDVKSQAN------  391 (504)
Q Consensus       332 -------g~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~---dg~--I~iwd~~~~~~------  391 (504)
                             ..|..|.+.+...-  ..+..   ......+..+..+.++++++....   ++.  +.+.|+.....      
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e---~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~  277 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             ccccCCcceEEEEECCCCcccccccccc---ccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccc
Confidence                   25777877765332  22221   122335667888999998765432   233  44445543211      


Q ss_pred             --eeeeeCCCCCeEEEEEcCCCcEEEEEeCC---c-EEEEEcCCCcc--eeeeecCCCCCCeeEEEECCCCCEEEEEe-C
Q 010669          392 --VAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVAS-A  462 (504)
Q Consensus       392 --~~~~~~~~~~i~~l~~s~~g~~l~s~~~d---~-v~vwd~~~~~~--~~~~~~~~~~~~v~~i~~~~~g~~l~~~~-~  462 (504)
                        ...+........-+. +.++.+++....+   + |...++.....  ...+-.. +...+..-.+...+.+|+... .
T Consensus       278 ~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~-~~~~~~~~~~~~~~~~lvl~~~~  355 (430)
T d1qfma1         278 KWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE-HEKDVLEWVACVRSNFLVLCYLH  355 (430)
T ss_dssp             CCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECC-CSSCEEEEEEEETTTEEEEEEEE
T ss_pred             ceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecc-cCcceeeeEEEEECCEEEEEEEc
Confidence              112222222333332 2344444444433   3 66677765432  1222221 233344434444556666553 4


Q ss_pred             c----EEEEEe
Q 010669          463 D----IRVYQV  469 (504)
Q Consensus       463 d----i~vw~~  469 (504)
                      +    |+++++
T Consensus       356 ~~~~~l~v~~~  366 (430)
T d1qfma1         356 DVKNTLQLHDL  366 (430)
T ss_dssp             TTEEEEEEEET
T ss_pred             CCEeEEEEEEC
Confidence            4    777776

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.56  E-value=1.6  Score=39.48  Aligned_cols=178  Identities=13%  Similarity=0.097  Sum_probs=106.0

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEeCC----------CCCCcceeEEeccCCcCeEEEEEccCCCEEEEEeCCCeEE
Q 010669          266 KKVTSVKFVTEGDLFLTGSADKTVRVWQGS----------EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC  335 (504)
Q Consensus       266 ~~v~~l~~s~~~~~l~s~s~dg~i~iwd~~----------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~i~  335 (504)
                      ....-++.++...+++.|+.++ +.|....          .+..+.....+    ..|..++|+  ++.++.. .++.+.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs--~d~l~v~-~~~~l~  108 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFH--GDQVLVS-TRNALY  108 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEE--TTEEEEE-ESSEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEee--CCEEEEE-eCCCEE
Confidence            3466788888777888888875 5666521          11112222222    358889997  3445554 456678


Q ss_pred             EEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEEcCCCceeeeeeC-----CCCCeEEEEEcCC
Q 010669          336 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-----HVGAVTAISFSEN  410 (504)
Q Consensus       336 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~dg~I~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~  410 (504)
                      .++...-........     -..++..+.++|.  .++....+|.+.++++..++......+     -.+.+.+++|++.
T Consensus       109 ~~~~~~l~~~~~~~~-----~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~k  181 (381)
T d1xipa_         109 SLDLEELSEFRTVTS-----FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDR  181 (381)
T ss_dssp             EEESSSTTCEEEEEE-----CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTS
T ss_pred             EEEeecccccccccc-----ccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCC
Confidence            788766443333321     1245778888775  466667889999999988754322111     2356888899888


Q ss_pred             CcEEEEEeCCcEEEE-EcCCCcceeeeec-CCCCCCeeEEEECCCCCEEEEEe
Q 010669          411 GYYLATAAHDGVKLW-DLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVAS  461 (504)
Q Consensus       411 g~~l~s~~~d~v~vw-d~~~~~~~~~~~~-~~~~~~v~~i~~~~~g~~l~~~~  461 (504)
                      |..++++..+...+- ++.....   +.. ......+.+|.|-.+..++++-+
T Consensus       182 gkq~v~~~g~~~q~k~~i~~~~~---~~~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         182 SFQSFAWRNGEMEKQFEFSLPSE---LEELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             CEEEEEEETTEEEEEEEECCCHH---HHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cEEEEEeCCCceeeccCCCCccc---cCCCcCCCcceeEEEEecCceEEEEEC
Confidence            888888755443322 2222211   111 11235688999988877777653

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.065  Score=38.21  Aligned_cols=43  Identities=12%  Similarity=0.172  Sum_probs=31.2

Q ss_pred             CccccCCCCCC--CceEeCCCCeeeeHHHHHHHHHhc---C-----CCCCCCC
Q 010669            1 MNCSISGEVPE--EPVVSKNSGLLFEKRLIERHILDY---G-----KCPVTGE   43 (504)
Q Consensus         1 ~~c~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~p~~~~   43 (504)
                      +-|+|+.+...  +.+..+.+||.|++.+|.+|++..   |     +||..+-
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            35999987643  444444699999999999999732   2     4887654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.82  E-value=4.9  Score=37.12  Aligned_cols=109  Identities=14%  Similarity=0.162  Sum_probs=63.2

Q ss_pred             cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC---CCCCCCCeEEEEECCC---CCEEEEE-e------C
Q 010669          311 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG---TDGRPEGYTSAAFHPD---GLILGTG-T------S  377 (504)
Q Consensus       311 ~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~pd---g~~l~~g-~------~  377 (504)
                      ..-++|+|.|+++++++--..|.|++++..++..........   ..........++|+|+   ..++... +      .
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            567899999999988776557999999988876544332111   1122457889999994   2333332 1      0


Q ss_pred             C----C--cEEEEEcCCCce-------e-eeee-CCCCCeEEEEEcCCCcEEEEEeC
Q 010669          378 E----A--LVKIWDVKSQAN-------V-AKFD-GHVGAVTAISFSENGYYLATAAH  419 (504)
Q Consensus       378 d----g--~I~iwd~~~~~~-------~-~~~~-~~~~~i~~l~~s~~g~~l~s~~~  419 (504)
                      +    +  .+..+.......       + .... ........|.|.|||.+.++.++
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            1    1  133333322211       1 1111 11124678999999987777664

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=90.46  E-value=0.047  Score=28.13  Aligned_cols=30  Identities=17%  Similarity=0.421  Sum_probs=25.8

Q ss_pred             CccccCCCCCCCceEeCCCCeeeeHHHHHH
Q 010669            1 MNCSISGEVPEEPVVSKNSGLLFEKRLIER   30 (504)
Q Consensus         1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~   30 (504)
                      |.|+.+|.-.+---++.|.|-+|+|.+-.|
T Consensus         1 frca~cgk~lestt~adkdgeiyck~cyak   30 (31)
T d1ibia2           1 FRCAKCGKSLESTTLTEKEGEIYCKGCYAK   30 (31)
T ss_dssp             EECSSSCCEECSSCSEEETTEEECHHHHHH
T ss_pred             CccccccCccccceeeccCCcEEEeeeeec
Confidence            469999999988888889999999988654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.01  E-value=4.3  Score=34.25  Aligned_cols=104  Identities=13%  Similarity=0.074  Sum_probs=52.5

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 010669          321 TNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----ALVKIWDVKSQA  390 (504)
Q Consensus       321 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~g~~d-----g~I~iwd~~~~~  390 (504)
                      ++..++.|+.+     ..+..||..+.+....-..    .......+.... ++.+++.|+.+     .....||..+.+
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~  222 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM----NTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET  222 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC----SSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             eecceEecCcccccccceEEEeecccccccccccc----ccccccccccce-eeeEEEecCccccccccceeeeeeccee
Confidence            34555555543     3578888887654432211    111112222322 45666666544     356777876654


Q ss_pred             eeeeeeC--CCCCeEEEEEcCCCcEEEEEeCC-----c-EEEEEcCCCc
Q 010669          391 NVAKFDG--HVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKLK  431 (504)
Q Consensus       391 ~~~~~~~--~~~~i~~l~~s~~g~~l~s~~~d-----~-v~vwd~~~~~  431 (504)
                      ....-..  -......+.+  ++++++.|+.+     . |.+||+.+.+
T Consensus       223 ~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         223 WTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             eecccCccCcccceEEEEE--CCEEEEEecCCCCeecceEEEEECCCCE
Confidence            3221111  1111222223  67788777654     2 7889988754

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=84.80  E-value=8.6  Score=31.12  Aligned_cols=216  Identities=13%  Similarity=0.101  Sum_probs=108.8

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceEEEcccCccceeEEEEeeCCC--EEEEE------eCCCcEEEEeCCCCCCcceeEE
Q 010669          234 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD--LFLTG------SADKTVRVWQGSEDGNYDCKHT  305 (504)
Q Consensus       234 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~------s~dg~i~iwd~~~~~~~~~~~~  305 (504)
                      +.++++++...|.+.++-+..++.+.--+   .+|....- |...  ++..+      -.-..|.+-++...+   ....
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~-Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~G---EE~~   97 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLD-PHYGVGRVILVRDVSKGAEQHALFKVNTSRPG---EEQR   97 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECE-ECTTBSEEEEEEECSTTSCCEEEEEEETTSTT---CEEE
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCC-CccCcceEEEEeehhcCcceeeEEEEccCCCC---eeeE
Confidence            34588888889999999887777654322   33333221 2111  11111      112234444444221   1222


Q ss_pred             eccCC-cCeEEEEEccCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCCCCCCeEEEEECCCCCEEEE----EeCCCc
Q 010669          306 LKDHT-AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT----GTSEAL  380 (504)
Q Consensus       306 ~~~h~-~~v~~l~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~pdg~~l~~----g~~dg~  380 (504)
                      +.... -.|.+++.. +.+..++|+......+|-++.|+.........    -+-|+.+.    +++++-    ++....
T Consensus        98 i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPp----FsFVtDI~----~d~I~G~g~~~g~~~s  168 (313)
T d2hu7a1          98 LEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPG----FGFVSDIR----GDLIAGLGFFGGGRVS  168 (313)
T ss_dssp             CTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESS----CEEEEEEE----TTEEEEEEEEETTEEE
T ss_pred             ecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCC----cceEEecc----CCeEEEEeeecCCcce
Confidence            22222 456666664 55677888888888899898887654433211    11222221    222221    111112


Q ss_pred             EEEEEcCCCceeeeeeCCCCCeEEEEEcCCCcEEEEEeCC----cEEEEEcCCCcceeeeecCCC------CCCeeEEEE
Q 010669          381 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD----GVKLWDLRKLKNFRSFESSDS------ETPTNSVDF  450 (504)
Q Consensus       381 I~iwd~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~s~~~d----~v~vwd~~~~~~~~~~~~~~~------~~~v~~i~~  450 (504)
                      ..+-|+.+|. +..|....+.++.....+..+. +++-+.    ...-+|++.++.- .+..+..      ...|.-+-+
T Consensus       169 fF~adl~SG~-lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~ye-rve~P~kd~~sy~p~~I~~~~Y  245 (313)
T d2hu7a1         169 LFTSNLSSGG-LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGY  245 (313)
T ss_dssp             EEEEETTTEE-EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEE-ECCCSSCHHHHHCCSEEEEEEE
T ss_pred             EEEEecccCC-EEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCcee-eeecCcccceeecceEEEeeee
Confidence            2333333322 2334444556666666765554 444332    2225588865432 2222211      234566779


Q ss_pred             CCCCCEEEEEeCc--EEEEE
Q 010669          451 DHSGSYLAVASAD--IRVYQ  468 (504)
Q Consensus       451 ~~~g~~l~~~~~d--i~vw~  468 (504)
                      +|+++.++.+-.|  -++|.
T Consensus       246 ~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         246 LPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             CTTSCEEEEEEETTEEEEEE
T ss_pred             CCCCcEEEEEecCCchheee
Confidence            9999998877766  66665