Citrus Sinensis ID: 010679

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500----
Protein Sequence
MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPARR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgskgrippphlrrpppgpgmmhpdpfvsgmrppmpgafppfdmmpppevMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHgqiggmksERELQMRNLTEKIAKMEAELktaepvkleFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELmnapnvdrraadgsyggatgnsenetsgrpvgqnayedgygvpqghgpppsattagvvgagpntstsayaatqsgtpmraaydiprgpgyeaskgpgydaskapsydptkgpsydpakgpgydptkgpgydaqkgsnydaqrgpnydihrgpsydpqrglgydmqrgpnydmqrgpgyetqrvpgydvqrgpvyeaqrapsyipqrgpgydlqrgqgydmrrapsydpsrgtgfdgaprgaaphgqvppplnnvpygsatpparsgsgqprggnparr
Flexible Loop (DISEMBL)
mgskgrippphlrrpppgpGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKtaepvklefqksKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGgatgnsenetsgrpVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAqrapsyipqrgpgydLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSAtpparsgsgqprggnparr
Low Complexity Region (SEG)
MGSKGRIppphlrrpppgpgmmhpdpFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPARR
Disordered region (IsUnstruct)
****************************************************************************************ELQILHG*********************************************NLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL******************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
**************************************************************************************************************************************************************************************************************************************NVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAA*****************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSA*******************
Disordered Region (DISPRO)
******************P*********SGMRPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD***A***************************************************************************************************************************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMxxxxxxxxxxxxxxxxxxxxxLKTAEPVKLEFQKSKTEAQNLVVAxxxxxxxxxxxxxxxxxxxxxVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESxxxxxxxxxxxxxxxxxxxxxLMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPARR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	504	2.2.26 [Sep-21-2011]
P13821	640	S-antigen protein OS=Plas	N/A	no	0.305	0.240	0.363	8e-20
P13822	76	S-antigen protein (Fragme	N/A	no	0.134	0.894	0.455	3e-07
A2VD00	1424	Eukaryotic translation in	N/A	no	0.345	0.122	0.342	5e-07

>sp|P13821|SANT_PLAFW S-antigen protein OS=Plasmodium falciparum (isolate Wellcome) PE=4 SV=1

 Score = 99.0 bits (245), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 77/154 (50%)

Query: 309 DIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQR 368
           D  +GP  +  KGP  D  K P+ D  KGP+ D  KGP  D  KGP  D  KG N D  +
Sbjct: 94  DGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDK 153

Query: 369 GPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSY 428
           GPN D  +GP+ D  +G   D  +GPN D  +GP  +  + P  D  +GP  +  + P+ 
Sbjct: 154 GPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNS 213

Query: 429 IPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDG 462
              +GP  D  +G   D  + P+ D  +G   DG
Sbjct: 214 DGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDG 247

S antigens are soluble heat-stable proteins present in the sera of some infected individuals.
Plasmodium falciparum (isolate Wellcome) (taxid: 5848)

>sp|P13822|SANT_PLAFP S-antigen protein (Fragment) OS=Plasmodium falciparum (isolate Palo Alto / Uganda) PE=4 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 37/68 (54%)

Query: 314 PGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYD 373
           P  +  KGP  D  K P+ D  KGP+ D  KGP  D  KGP  D  KG N D  +GPN D
Sbjct: 4   PNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSD 63

Query: 374 IHRGPSYD 381
             +GP+ D
Sbjct: 64  GDKGPNSD 71

S antigens are soluble heat-stable proteins present in the sera of some infected individuals.

Plasmodium falciparum (isolate Palo Alto / Uganda) (taxid: 57270)

>sp|A2VD00|EIF3A_XENLA Eukaryotic translation initiation factor 3 subunit A OS=Xenopus laevis GN=eif3a PE=2 SV=1

 Score = 56.2 bits (134), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 99/225 (44%), Gaps = 51/225 (22%)

Query: 264  DGYGVPQGHGPPP-SATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGP--GYEASK 320
            D   V +G G    +A+  G    GP  S       + G P R   D P GP  G+E  +
Sbjct: 944  DEEQVARGDGDEERAASWRGTDDRGPKRSVE-----EDGGPRRGFNDEP-GPRRGFEDDQ 997

Query: 321  GP--GYDASKAPS--YDPTKGPS--YDPAKGP--GYDPTKGPGYDAQKGSNYDAQRGPNY 372
            GP  G D  + P    D  +GP    D  +GP  G D  +GP    ++G   D  RGP  
Sbjct: 998  GPRRGLDEDRGPRRGLDEDRGPRRGLDEDRGPRRGLDEDRGP----RRG--LDEDRGP-- 1049

Query: 373  DIHRGPSYD--PQRGLGYDMQRGPN--YDMQRGPGYETQRVPGYDVQRGPV--YEAQRAP 426
               RG   D  P+RGL  D  RGP   +D  RGP        G+D  RGP   ++  R P
Sbjct: 1050 --RRGLDEDRGPRRGLDED--RGPRRGFDEDRGPRR------GFDEDRGPRRDFDEDRGP 1099

Query: 427  S--YIPQRGP--GYDLQRG--QGYDMRRAPS--YDPSRG--TGFD 461
               +   RGP  G+D  RG  +G+D  R P   +D  RG   GFD
Sbjct: 1100 RRGFDEDRGPRRGFDEDRGPRRGFDEDRGPRRGFDDDRGPRRGFD 1144

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	504
255581346	467	conserved hypothetical protein [Ricinus	0.886	0.957	0.572	1e-142
224127348	482	predicted protein [Populus trichocarpa]	0.940	0.983	0.562	1e-135
147771156	562	hypothetical protein VITISV_025050 [Viti	0.734	0.658	0.690	1e-135
225451915	421	PREDICTED: uncharacterized protein LOC10	0.736	0.881	0.681	1e-133
449447462	398	PREDICTED: uncharacterized protein LOC10	0.704	0.891	0.622	1e-125
356526605	418	PREDICTED: uncharacterized protein LOC10	0.738	0.889	0.596	1e-120
356567168	404	PREDICTED: uncharacterized protein LOC10	0.672	0.839	0.577	1e-106
297838451	364	hypothetical protein ARALYDRAFT_475814 [	0.623	0.862	0.591	4e-96
30697468	359	uncharacterized protein [Arabidopsis tha	0.623	0.874	0.583	8e-95
4204281	346	Hypothetical protein [Arabidopsis thalia	0.601	0.875	0.582	6e-92

>gi|255581346|ref|XP_002531483.1| conserved hypothetical protein [Ricinus communis] gi|223528910|gb|EEF30907.1| conserved hypothetical protein [Ricinus communis]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 300/524 (57%), Positives = 347/524 (66%), Gaps = 77/524 (14%)

Query: 1   MGSKGRIPPPH-LRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQH 59
           MGSKGRIPPPH LRRP PG G+MHPDPF  G+  P PG FP FDM+PPPEV+EQK+A Q 
Sbjct: 1   MGSKGRIPPPHHLRRPLPGGGIMHPDPFGPGVHGPPPGPFPAFDMLPPPEVLEQKLAGQQ 60

Query: 60  VEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKME 119
           VE+Q+LATENQRLAATH TLRQELAAAQ ELQ+LH  IG +K+ERE QMR L +KIAKME
Sbjct: 61  VEIQRLATENQRLAATHVTLRQELAAAQQELQMLHNDIGVLKAEREQQMRGLMDKIAKME 120

Query: 120 AELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELES 179
            ELK AEPV+ E Q+++TEA+ LVVAR+EL+ KVHQLTQDL RAH DVQQIP L+SEL+S
Sbjct: 121 TELKAAEPVRSELQQARTEAEKLVVARQELMTKVHQLTQDLHRAHADVQQIPILISELDS 180

Query: 180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADG 239
           LRQEY  CR +++YEKK ++DH ESLQVME NY+TMA EVEKL  EL N  NVD R   G
Sbjct: 181 LRQEYQRCRVSFDYEKKLFSDHRESLQVMENNYVTMAREVEKLHLELTNTSNVDIRTVTG 240

Query: 240 S-YGGATGNSENETSGRPVGQNAYEDGYGV--PQGHGPPP----------SATTAGVVGA 286
             YGGATGN+ENETS R VG+N YED YGV   QGH P P          + + +    A
Sbjct: 241 GPYGGATGNNENETSSRSVGENKYEDSYGVSQSQGHTPIPGNSGSAAATAAGSASTGAKA 300

Query: 287 GPNTSTSAYAATQSGT-PMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKG 345
           G    T  Y   QSG+   R+AYD PRGP YEA+KGP YD S                +G
Sbjct: 301 GTGAGTPTYTGAQSGSASTRSAYDTPRGPNYEATKGPSYDVS----------------RG 344

Query: 346 PGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYE 405
            GYD ++G  YDAQ+G +YDAQRGP Y++ RGPSYD Q       QR P YD+QR PGY 
Sbjct: 345 SGYDLSRGAAYDAQRGHSYDAQRGPGYNMQRGPSYDAQ-------QRVPGYDVQRIPGY- 396

Query: 406 TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPR 465
             R PGYDVQ+GP Y+A                                SR  G+D A R
Sbjct: 397 APRTPGYDVQQGPHYDA--------------------------------SRVAGYDPAAR 424

Query: 466 GAA--PHGQVPPPLNNVPYGSATPPARSGSG---QPRGGNPARR 504
           G A  PHGQ+ P  NNVPYGSATP  R+ SG   Q RGGNP RR
Sbjct: 425 GTAVPPHGQMTPA-NNVPYGSATPSTRAVSGYEAQARGGNPVRR 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127348|ref|XP_002329255.1| predicted protein [Populus trichocarpa] gi|222870709|gb|EEF07840.1| predicted protein [Populus trichocarpa]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 288/512 (56%), Positives = 342/512 (66%), Gaps = 38/512 (7%)

Query: 1   MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHV 60
           M SKGRIPPPHLRRP PG G++HPD F SG+R P  G FPPF+M+PPPEVMEQKIA+QH 
Sbjct: 1   MASKGRIPPPHLRRPLPGSGIVHPDSFGSGLRLPQ-GPFPPFEMLPPPEVMEQKIAAQHG 59

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           EMQ+LATENQRLAATHGTLRQELAAAQHELQ+LH  IG +K+ERE QMR L + I KME 
Sbjct: 60  EMQRLATENQRLAATHGTLRQELAAAQHELQLLHAHIGAVKAEREQQMRVLVDNIGKMET 119

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           ELK AEPV+LE Q+++ EA+NL+V R+EL++K+HQL+QDL RA  DVQQIPAL+SELE L
Sbjct: 120 ELKDAEPVRLELQQARVEAENLLVTRQELVSKIHQLSQDLHRAQVDVQQIPALMSELEGL 179

Query: 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGS 240
           RQEY  CR +Y+YEKK ++DHLE LQ MEKNYITM+ E+EKLR+EL    NVD R   G 
Sbjct: 180 RQEYQRCRVSYDYEKKLFHDHLEQLQTMEKNYITMSRELEKLRSELTKTANVDIRNG-GP 238

Query: 241 YGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPP----PSATTAGVVGAGPNTSTSAYA 296
           YGG  GN E+E SG P G+N YEDGYG+PQ  G P      A   G VG     + + YA
Sbjct: 239 YGGPAGN-ESEASGHPAGKNIYEDGYGIPQSQGHPALHNSGAANIGAVGNASAGTATPYA 297

Query: 297 ATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGY 356
             QSG         P  PGYEA +GP Y+  K P YD ++ P YD  +G GYD  +GPGY
Sbjct: 298 GAQSGA-------APSKPGYEAPRGPAYEPPKVPGYDASRLPGYDMQRGHGYDAQRGPGY 350

Query: 357 DAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQR 416
           DAQ+   YD QR   YDI RG +YD QRG GYD QR PNY   RG GY+     G    +
Sbjct: 351 DAQRVPGYDPQRLAGYDIQRGHAYDAQRGQGYDAQRLPNYHASRGAGYDAAASRGAAGPQ 410

Query: 417 GPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAA-PHGQVPP 475
           G V     AP       P  ++     Y     P++    G+G++   RG A PHGQ+  
Sbjct: 411 GHV-----AP-------PANNMP----YGSATPPTHS---GSGYEAPARGVAGPHGQMAA 451

Query: 476 PLNNVPYGSATPPARSGS---GQPRGGNPARR 504
             NN+PYGSATPP RSGS      R  NPARR
Sbjct: 452 G-NNMPYGSATPPTRSGSVYEASARAPNPARR 482

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771156|emb|CAN65241.1| hypothetical protein VITISV_025050 [Vitis vinifera]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 261/378 (69%), Positives = 293/378 (77%), Gaps = 8/378 (2%)

Query: 1   MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHV 60
           MGSKGRIPP HLRRP PGPG+MHPD FV G+RPP  G F PFDM+PPPEVMEQK+A+QHV
Sbjct: 1   MGSKGRIPP-HLRRPLPGPGLMHPDSFVPGIRPPH-GVFSPFDMLPPPEVMEQKLAAQHV 58

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           +MQ+LA ENQRLAATHGTLRQELAAAQHELQ+L  QIG MKSERE +MR+LT+KIAKMEA
Sbjct: 59  DMQRLANENQRLAATHGTLRQELAAAQHELQMLQAQIGVMKSEREQRMRSLTDKIAKMEA 118

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           ELK AEPVKLE Q+++ +AQ+LV AR+ELI+KV QLTQDLQR+H+DVQQIPAL++ELESL
Sbjct: 119 ELKAAEPVKLELQQARADAQSLVAARQELISKVQQLTQDLQRSHSDVQQIPALMAELESL 178

Query: 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGS 240
           RQEY HCR TY+YEKK YNDHLESLQVMEKNY+TMA EVEKLRAEL N  N+DRR     
Sbjct: 179 RQEYQHCRATYDYEKKLYNDHLESLQVMEKNYMTMAREVEKLRAELTNTANMDRRTGGPY 238

Query: 241 YGGATGNSENETSGR-PVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAAT- 298
            G    N E E SG  P+G NAYEDGYGVPQG  P P AT  GV  AG         A  
Sbjct: 239 GGPTGYN-EGEASGHHPIGHNAYEDGYGVPQGRAPLPGATGGGVAAAGGGGGGGGTPAYA 297

Query: 299 --QSG-TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPG 355
             QSG    R  YD PRGPGY+A +GPGYDA + P YDP +GP YD  KGPGYD  +GP 
Sbjct: 298 GPQSGPAASRPGYDGPRGPGYDAPRGPGYDAPRGPGYDPQRGPGYDAQKGPGYDAQRGPA 357

Query: 356 YDAQKGSNYDAQRGPNYD 373
           YD Q+G  YDA RG NYD
Sbjct: 358 YDGQRGPVYDAPRGTNYD 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451915|ref|XP_002282805.1| PREDICTED: uncharacterized protein LOC100244706 [Vitis vinifera] gi|298204399|emb|CBI16879.3| unnamed protein product [Vitis vinifera]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/377 (68%), Positives = 290/377 (76%), Gaps = 6/377 (1%)

Query: 1   MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHV 60
           MGSKGRIPP HLRRP PGPG+MHPD FV G+RPP  G F PFDM+PPPEVMEQK+A+QHV
Sbjct: 1   MGSKGRIPP-HLRRPLPGPGLMHPDSFVPGIRPPH-GVFSPFDMLPPPEVMEQKLAAQHV 58

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           +MQ+LA ENQRLAATHGTLRQELAAAQHELQ+L  QIG MKSERE +MR+LT+KIAKMEA
Sbjct: 59  DMQRLANENQRLAATHGTLRQELAAAQHELQMLQAQIGVMKSEREQRMRSLTDKIAKMEA 118

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           ELK AEPVKLE Q+++ +AQ+LV AR+ELI+KV QLTQDLQR+H+DVQQIPAL++ELESL
Sbjct: 119 ELKAAEPVKLELQQARADAQSLVAARQELISKVQQLTQDLQRSHSDVQQIPALMAELESL 178

Query: 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGS 240
           RQEY HCR TY+YEKK YNDHLESLQVMEKNY+TMA EVEKLRAEL N  N+DRR     
Sbjct: 179 RQEYQHCRATYDYEKKLYNDHLESLQVMEKNYMTMAREVEKLRAELTNTANMDRRTGGPY 238

Query: 241 YGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAAT-- 298
            G    N    +   P+G NAYEDGYGVPQG  P P AT  GV  AG         A   
Sbjct: 239 GGPTGYNEGEASGHHPIGHNAYEDGYGVPQGRAPLPGATGGGVAAAGGGGGGGGTPAYAG 298

Query: 299 -QSG-TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGY 356
            QSG    R  YD PRGPGY+A +GPGYDA + P YDP +GP YD  KGPGYD  +GP Y
Sbjct: 299 PQSGPAASRPGYDGPRGPGYDAPRGPGYDAPRGPGYDPQRGPGYDAQKGPGYDAQRGPAY 358

Query: 357 DAQKGSNYDAQRGPNYD 373
           D Q+G  YDA RG NYD
Sbjct: 359 DGQRGPVYDAPRGTNYD 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447462|ref|XP_004141487.1| PREDICTED: uncharacterized protein LOC101210432 [Cucumis sativus] gi|449481420|ref|XP_004156177.1| PREDICTED: uncharacterized protein LOC101226645 [Cucumis sativus]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/392 (62%), Positives = 283/392 (72%), Gaps = 37/392 (9%)

Query: 1   MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHV 60
           MGSKGRIPP H RR   G G++HP+ F   +RPP PGAFPPFDM+PPPEVMEQK+A QHV
Sbjct: 1   MGSKGRIPPSHGRRTLQGSGVLHPEAFGHALRPP-PGAFPPFDMLPPPEVMEQKLAGQHV 59

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           E+QKLATENQRLAATHGTLRQELAAAQHELQILH QIG +KSERE Q RNL++KIAKMEA
Sbjct: 60  EIQKLATENQRLAATHGTLRQELAAAQHELQILHAQIGAVKSEREQQARNLSDKIAKMEA 119

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           ELK +EP+KLE Q++K++AQNL+VAR+ELI++V  LTQDLQRAH DVQQ+P L+SELESL
Sbjct: 120 ELKASEPIKLELQQAKSDAQNLIVARQELISRVQHLTQDLQRAHGDVQQVPVLMSELESL 179

Query: 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGS 240
           RQEY HCR TY+YEKK YNDHLESLQVMEKNYITMA E+EKLRAEL N  +++RR   G 
Sbjct: 180 RQEYQHCRATYDYEKKLYNDHLESLQVMEKNYITMARELEKLRAELTNTSSLERRHG-GP 238

Query: 241 YGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQS 300
           Y G T N+E E SG   GQN YEDGYGV QG GP P AT  G   AG    T+AY   Q+
Sbjct: 239 Y-GTTPNNEIEASGNAAGQNTYEDGYGVAQGRGPLP-ATAGGASSAG----TTAYTGPQT 292

Query: 301 G-TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQ 359
           G T  R  +D  RGP     +GPGYD  +   YD  +                 PGYD Q
Sbjct: 293 GSTANRPNFDATRGP----QRGPGYDGGRGSIYDSQR-----------------PGYDGQ 331

Query: 360 KGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQ 391
           +G       GP Y++   P+YD  RG+GYD Q
Sbjct: 332 RG-------GPGYNVPGLPTYDASRGVGYDPQ 356

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526605|ref|XP_003531907.1| PREDICTED: uncharacterized protein LOC100802139 [Glycine max]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/394 (59%), Positives = 278/394 (70%), Gaps = 22/394 (5%)

Query: 1   MGSKGRIPPPHLRRPPP--GPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQ 58
           MGSKGR+PPP   R P   GP  M P P              PFD++PPP+VMEQK+ASQ
Sbjct: 1   MGSKGRMPPPPHLRRPHPPGPAAM-PHPLAG-----------PFDLLPPPQVMEQKLASQ 48

Query: 59  HVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKM 118
           H EMQ+LATENQRLAATHG LRQELAAAQHELQ+LH  +  +K ERE Q+R   EKI+KM
Sbjct: 49  HAEMQRLATENQRLAATHGVLRQELAAAQHELQMLHAHVSALKGEREQQIRVQLEKISKM 108

Query: 119 EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELE 178
           EAE K AE VK+E Q+++ EAQNLVV+R+EL++K   LTQ+LQR H D  QIPAL+SELE
Sbjct: 109 EAEAKGAESVKMELQQARGEAQNLVVSRDELVSKAQHLTQELQRVHADAVQIPALISELE 168

Query: 179 SLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAAD 238
            LRQEY HCR T++YEKK YNDHLESLQVMEKNY++M+ EVEKLRAEL N  NVDRR++ 
Sbjct: 169 CLRQEYQHCRATFDYEKKLYNDHLESLQVMEKNYVSMSREVEKLRAELTNTANVDRRSS- 227

Query: 239 GSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAAT 298
           G YGG +G +ENE SG PVGQNAYEDGY   QG GP P+A+     G G N +T   A  
Sbjct: 228 GPYGGTSGTNENEASGLPVGQNAYEDGYSFMQGRGPLPAAS-----GGGGNATTLITAGG 282

Query: 299 QSG-TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYD 357
           Q G  P    YD PRGPGY AS GP YDA +  +YD  +   YD  +G  YD  +GP +D
Sbjct: 283 QPGPAPAGTGYDAPRGPGYGASAGPAYDAQRVATYDAQRLTGYDAFRGSAYDSKRGPIFD 342

Query: 358 AQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQ 391
           AQ+ + YD QRGP YD+ RGP+YD  R  GYD Q
Sbjct: 343 AQR-TGYDPQRGPGYDMQRGPAYDAPRADGYDAQ 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567168|ref|XP_003551793.1| PREDICTED: uncharacterized protein LOC100783811 [Glycine max]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/357 (57%), Positives = 251/357 (70%), Gaps = 18/357 (5%)

Query: 36  PGAFP-----PFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL 90
           P A P     PFD +PPP+VMEQK+ASQH EMQ+L+TENQRLAATH  LRQELAAAQHE+
Sbjct: 21  PAAMPHPLVVPFDFLPPPQVMEQKLASQHAEMQRLSTENQRLAATHSVLRQELAAAQHEM 80

Query: 91  QILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELI 150
           Q+LHG +  +K ERE Q+R   EKIAKME+E + +E VK+E Q+++ EAQNLVV+R+EL+
Sbjct: 81  QMLHGHVVALKGEREQQIRAQMEKIAKMESEAQGSESVKMELQQARGEAQNLVVSRDELV 140

Query: 151 AKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK 210
           +K   LTQ+LQR H D  QIPAL+SE E LRQEY HCR T++YEK  YNDHLESLQVMEK
Sbjct: 141 SKAQHLTQELQRVHADAVQIPALISEFECLRQEYQHCRATFDYEKNLYNDHLESLQVMEK 200

Query: 211 NYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQ 270
           NY++M+ EVEKLRAEL N  NVDRR++ G YGG +G +ENE SG PVGQNAYEDGY V Q
Sbjct: 201 NYVSMSREVEKLRAELTNTANVDRRSS-GPYGGTSGTNENEASGLPVGQNAYEDGYSVMQ 259

Query: 271 GHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAP 330
           G GP P+A  +G   A   T       T  G P  A    P G GY+A  GPGY AS   
Sbjct: 260 GRGPLPAAAGSGGGNATTIT-------TAGGQPGPA----PAGTGYDAPIGPGYGASTGS 308

Query: 331 SYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQ-RGL 386
           +YD  +G +YD  +  G +  +G  YD+++GS YD QR P YD  R   YD Q RG+
Sbjct: 309 TYDAQRGATYDTQRLTGSNAFRGSAYDSKRGSGYDMQRAPAYDAPRAAGYDAQSRGV 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838451|ref|XP_002887107.1| hypothetical protein ARALYDRAFT_475814 [Arabidopsis lyrata subsp. lyrata] gi|297332948|gb|EFH63366.1| hypothetical protein ARALYDRAFT_475814 [Arabidopsis lyrata subsp. lyrata]

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 206/348 (59%), Positives = 245/348 (70%), Gaps = 34/348 (9%)

Query: 1   MGSKGRIPPPH--LRRPPPGPG--MMHPDPFVSGMRPP---MPGAFPPFDMMPPPEVMEQ 53
           M SKGRI P H  +RRP PGPG  + HP+ F S    P     GA+P F+M+PPPEVMEQ
Sbjct: 1   MESKGRIHPSHHHMRRPLPGPGGGIAHPETFGSHAAIPPSAAQGAYPSFNMLPPPEVMEQ 60

Query: 54  KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTE 113
           K A+QH E+Q+LA ENQRL ATHG+LRQELAAAQHELQ+LH QIG MKSERE +M  L E
Sbjct: 61  KFAAQHGELQRLAIENQRLGATHGSLRQELAAAQHELQMLHSQIGSMKSEREQRMMGLAE 120

Query: 114 KIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL 173
           K+AKME EL+ +E VKLE Q+++ EA++LVVAREEL++KVHQLTQ+LQ+A +DVQQIPAL
Sbjct: 121 KVAKMETELQKSEAVKLEMQQARAEARSLVVAREELMSKVHQLTQELQKARSDVQQIPAL 180

Query: 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233
           +SELE+LRQEY  CR TY+YEKKFYNDHLESLQ MEKNY+TMA EVEKL+A+LMN+ N D
Sbjct: 181 MSELENLRQEYQQCRATYDYEKKFYNDHLESLQAMEKNYMTMAREVEKLQAQLMNSANSD 240

Query: 234 RRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTS 293
           RRA  G   G+  N+E + SG   G   YED +G PQG+ P   A  A    AGPN+   
Sbjct: 241 RRA--GVPYGSNMNAEIDASGHQSGNGYYEDAFG-PQGYIPQSVAGNA----AGPNSIVG 293

Query: 294 AY-----AATQSG-TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 335
           A        TQ G  P R  Y+ PRGP       PG       SYDPT
Sbjct: 294 AAQYPYPGVTQPGYFPPRPGYNFPRGP-------PG-------SYDPT 327

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697468|ref|NP_176888.2| uncharacterized protein [Arabidopsis thaliana] gi|29028878|gb|AAO64818.1| At1g67170 [Arabidopsis thaliana] gi|110736466|dbj|BAF00201.1| hypothetical protein [Arabidopsis thaliana] gi|332196487|gb|AEE34608.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  353 bits (907), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 203/348 (58%), Positives = 243/348 (69%), Gaps = 34/348 (9%)

Query: 1   MGSKGRIPPPH--LRRPPPGPG--MMHPDPFVS-GMRPPMP--GAFPPFDMMPPPEVMEQ 53
           M SKGRI P H  +RRP PGPG  + HP+ F + G  PP    G +P F+M+PPPEVMEQ
Sbjct: 1   MESKGRIHPSHHHMRRPLPGPGGCIAHPETFGNHGAIPPSAAQGVYPSFNMLPPPEVMEQ 60

Query: 54  KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTE 113
           K  +QH E+Q+LA ENQRL  THG+LRQELAAAQHE+Q+LH QIG MKSERE +M  L E
Sbjct: 61  KFVAQHGELQRLAIENQRLGGTHGSLRQELAAAQHEIQMLHAQIGSMKSEREQRMMGLAE 120

Query: 114 KIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL 173
           K+AKME EL+ +E VKLE Q+++ EA++LVVAREEL++KVHQLTQ+LQ++ +DVQQIPAL
Sbjct: 121 KVAKMETELQKSEAVKLEMQQARAEARSLVVAREELMSKVHQLTQELQKSRSDVQQIPAL 180

Query: 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233
           +SELE+LRQEY  CR TY+YEKKFYNDHLESLQ MEKNY+TMA EVEKL+A+LMN  N D
Sbjct: 181 MSELENLRQEYQQCRATYDYEKKFYNDHLESLQAMEKNYMTMAREVEKLQAQLMNNANSD 240

Query: 234 RRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTS 293
           RRA  G YG    N+E + SG   G   YED +G PQG+ P P A  A     GPN+   
Sbjct: 241 RRAG-GPYGNNI-NAEIDASGHQSGNGYYEDAFG-PQGYIPQPVAGNA----TGPNSVVG 293

Query: 294 A-----YAATQSG-TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 335
           A        TQ G  P R  Y+ PRGP       PG       SYDPT
Sbjct: 294 AAQYPYQGVTQPGYFPQRPGYNFPRGP-------PG-------SYDPT 327

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4204281|gb|AAD10662.1| Hypothetical protein [Arabidopsis thaliana]

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 195/335 (58%), Positives = 235/335 (70%), Gaps = 32/335 (9%)

Query: 12  LRRPPPGPG--MMHPDPFVS-GMRPPMP--GAFPPFDMMPPPEVMEQKIASQHVEMQKLA 66
           +RRP PGPG  + HP+ F + G  PP    G +P F+M+PPPEVMEQK  +QH E+Q+LA
Sbjct: 1   MRRPLPGPGGCIAHPETFGNHGAIPPSAAQGVYPSFNMLPPPEVMEQKFVAQHGELQRLA 60

Query: 67  TENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE 126
            ENQRL  THG+LRQELAAAQHE+Q+LH QIG MKSERE +M  L EK+AKME EL+ +E
Sbjct: 61  IENQRLGGTHGSLRQELAAAQHEIQMLHAQIGSMKSEREQRMMGLAEKVAKMETELQKSE 120

Query: 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHH 186
            VKLE Q+++ EA++LVVAREEL++KVHQLTQ+LQ++ +DVQQIPAL+SELE+LRQEY  
Sbjct: 121 AVKLEMQQARAEARSLVVAREELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQ 180

Query: 187 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATG 246
           CR TY+YEKKFYNDHLESLQ MEKNY+TMA EVEKL+A+LMN  N DRRA  G YG    
Sbjct: 181 CRATYDYEKKFYNDHLESLQAMEKNYMTMAREVEKLQAQLMNNANSDRRAG-GPYGNNI- 238

Query: 247 NSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSA-----YAATQSG 301
           N+E + SG   G   YED +G PQG+ P P A  A     GPN+   A        TQ G
Sbjct: 239 NAEIDASGHQSGNGYYEDAFG-PQGYIPQPVAGNA----TGPNSVVGAAQYPYQGVTQPG 293

Query: 302 -TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 335
             P R  Y+ PRGP       PG       SYDPT
Sbjct: 294 YFPQRPGYNFPRGP-------PG-------SYDPT 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	504
TAIR|locus:2033681	359	AT1G67170 "AT1G67170" [Arabido	0.623	0.874	0.567	9.9e-87
TAIR|locus:2089616	331	AT3G14750 "AT3G14750" [Arabido	0.472	0.719	0.380	2.9e-39
TAIR|locus:2035751	283	AT1G55170 "AT1G55170" [Arabido	0.452	0.805	0.356	6.9e-31
TAIR|locus:2156146	238	AT5G61920 "AT5G61920" [Arabido	0.363	0.768	0.349	2.2e-25
FB|FBgn0085362	578	Vml "Vitelline membrane-like"	0.529	0.461	0.295	3.4e-22
TAIR|locus:2060848	288	AT2G30120 [Arabidopsis thalian	0.456	0.798	0.276	1.6e-17
UNIPROTKB|A2VD00	1424	eif3a "Eukaryotic translation	0.779	0.275	0.262	1.2e-11
UNIPROTKB|A4II09	1391	eif3a "Eukaryotic translation	0.367	0.132	0.303	1.3e-14
UNIPROTKB|F1S187	406	LOC100518332 "Uncharacterized	0.418	0.519	0.315	1.4e-13
UNIPROTKB|P11414	467	POLR2A "DNA-directed RNA polym	0.416	0.449	0.292	6e-10

TAIR|locus:2033681 AT1G67170 "AT1G67170" [Arabidopsis thaliana (taxid:3702)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 189/333 (56%), Positives = 229/333 (68%)

Query:    30 GMRPPMP--GAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQ 87
             G  PP    G +P F+M+PPPEVMEQK  +QH E+Q+LA ENQRL  THG+LRQELAAAQ
Sbjct:    35 GAIPPSAAQGVYPSFNMLPPPEVMEQKFVAQHGELQRLAIENQRLGGTHGSLRQELAAAQ 94

Query:    88 HELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVARE 147
             HE+Q+LH QIG MKSERE +M  L EK+AKME EL+ +E VKLE Q+++ EA++LVVARE
Sbjct:    95 HEIQMLHAQIGSMKSEREQRMMGLAEKVAKMETELQKSEAVKLEMQQARAEARSLVVARE 154

Query:   148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207
             EL++KVHQLTQ+LQ++ +DVQQIPAL+SELE+LRQEY  CR TY+YEKKFYNDHLESLQ 
Sbjct:   155 ELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFYNDHLESLQA 214

Query:   208 MEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYG 267
             MEKNY+TMA EVEKL+A+LMN  N DRRA  G YG    N+E + SG   G   YED +G
Sbjct:   215 MEKNYMTMAREVEKLQAQLMNNANSDRRAG-GPYGNNI-NAEIDASGHQSGNGYYEDAFG 272

Query:   268 VPQGHGPPPSATTAGVVGAGPNTSTSA----Y-AATQSGT-PMRAAYDIPRGPGYEASKG 321
              PQG+ P P A  A     GPN+   A    Y   TQ G  P R  Y+ PRGP    S  
Sbjct:   273 -PQGYIPQPVAGNA----TGPNSVVGAAQYPYQGVTQPGYFPQRPGYNFPRGP--PGSYD 325

Query:   322 PGYDASKAPSYDP-TKGPSYD-PAKGPGYDPTK 352
             P       P   P   GPS + P  G   +P++
Sbjct:   326 PTTRLPTGPYGAPFPPGPSNNTPYAGTHGNPSR 358

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089616 AT3G14750 "AT3G14750" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 96/252 (38%), Positives = 146/252 (57%)

Query:    45 MPPP-EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQ-ILHGQIGGMKS 102
             +PP   ++E ++A+Q+ ++Q L  +NQRLAATH  L+QEL  AQHELQ I+H  I  +++
Sbjct:    63 LPPQFSILEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMH-YIDSLRA 121

Query:   103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162
             E E+ MR + +K  + E EL+  + ++ E QK + + +     R+EL ++VH +TQDL R
Sbjct:   122 EEEIMMREMYDKSMRSEMELREVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLAR 181

Query:   163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222
                D+QQIP L +E+E+ +QE    R   +YEKK Y ++ E  ++ME   + MA E+EKL
Sbjct:   182 LTADLQQIPTLTAEIENTKQELQRARAAIDYEKKGYAENYEHGKIMEHKLVAMARELEKL 241

Query:   223 RAELMNAP-NVDRRAADGSYGGAT--GNSENETSGRPVGQNAYEDGYGV-PQ-----GHG 273
             RAE+ N+  +       G+ GG    G   N  +G PV  N Y+  Y + P      G+ 
Sbjct:   242 RAEIANSETSAYANGPVGNPGGVAYGGGYGNPEAGYPV--NPYQPNYTMNPAQTGVVGYY 299

Query:   274 PPPSATTAGVVG 285
             PPP    A   G
Sbjct:   300 PPPYGPQAAWAG 311

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2035751 AT1G55170 "AT1G55170" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 86/241 (35%), Positives = 130/241 (53%)

Query:    32 RPPMPGAFPPFDMMPPPEVMEQ------KIASQHVEMQKLATENQRLAATHGTLRQELAA 85
             RP + G  PP    PPP ++E       +I  Q  E+++L ++N  LA     L +EL A
Sbjct:    25 RPFLRG--PPLLQPPPPSLLEDLQIQEGEIRRQDAEIRRLLSDNHGLADDRMVLERELVA 82

Query:    86 AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVA 145
             A+ EL  ++  I  +++E++LQ+R  +EK  K+E +++  E  K E  + + E Q L   
Sbjct:    83 AKEELHRMNLMISDLRAEQDLQLREFSEKRHKLEGDVRAMESYKKEASQLRGEVQKLDEI 142

Query:   146 REELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL 205
             + EL   V  L +DL +  +D +QIP + +E++ L++E  H R   EYEKK   + +E  
Sbjct:   143 KRELSGNVQLLRKDLAKLQSDNKQIPGMRAEVKDLQKELMHARDAIEYEKKEKFELMEQR 202

Query:   206 QVMEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDG 265
             Q MEKN ++MA EVEKLRAEL     VD R     +GG+ G + N   G   G     D 
Sbjct:   203 QTMEKNMVSMAREVEKLRAELAT---VDSRP--WGFGGSYGMNYNNMDGTFRGSYGENDT 257

Query:   266 Y 266
             Y
Sbjct:   258 Y 258

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2156146 AT5G61920 "AT5G61920" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 64/183 (34%), Positives = 107/183 (58%)

Query:    49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
             +++E KIA Q  E+ +L+ +N++LA+++  L+++L  A  E+Q L   I   +++ E+Q+
Sbjct:    51 DILENKIAVQAAEIDRLSNDNRKLASSYVALKEDLTVADREVQGLRAHIRKTETDHEIQI 110

Query:   109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
             R+  EKIAKME  +K  E ++ E Q +  EA  L   REEL +KV    +DL++   + +
Sbjct:   111 RSTLEKIAKMEGMVKNRENIRREVQSAHIEAHRLAREREELASKVKLGMKDLKKVCLEAE 170

Query:   169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228
              + A   ELE L++E+   R  +E EK    + L  L+ ME+  I     +EKLR+E+  
Sbjct:   171 SLEASSQELERLKEEHQRLRKEFEEEKSGNVEKLAQLKGMERKIIGAVKAIEKLRSEIST 230

Query:   229 APN 231
             A N
Sbjct:   231 ARN 233

GO:0008150 "biological_process" evidence=ND

FB|FBgn0085362 Vml "Vitelline membrane-like" [Drosophila melanogaster (taxid:7227)]

 Score = 284 (105.0 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 84/284 (29%), Positives = 100/284 (35%)

Query:   229 APNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQG---HGPPPSATTAGVVG 285
             AP+    AA  SY      S +  S  P         Y  P     H P   A++     
Sbjct:   198 APSYSAPAAP-SYSAPAAPSYSAPSA-PSYSAQKTSSYSAPAAPSYHAPAAPASSYSAP- 254

Query:   286 AGPNTSTSA---YAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDP 342
             AGP+ S  A   Y+A     P  ++Y   + P Y A   P Y A  APSY  +  PSY  
Sbjct:   255 AGPSYSAPAAPSYSAPSYSAPA-SSYSALKAPSYSAPAAPSYSAPAAPSYSSSASPSYSS 313

Query:   343 AKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGP 402
                  Y     P Y A K  +Y A   P+Y     PSY       Y     P+Y     P
Sbjct:   314 PASSSYSAPAAPTYSAPKAQSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAP 373

Query:   403 GYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDG 462
              Y     P Y       Y A  APSY     P Y       Y    APSY       +  
Sbjct:   374 SYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYS- 432

Query:   463 APRGAAPHGQVPP-PLNNVPYGSATPPARS---GSGQPRGGNPA 502
             AP  AAP    P  P  + P  S    AR+   GS  P  G  A
Sbjct:   433 AP--AAPSYSAPAAPSYSAPASSGYSAARAYSAGSAAPASGYSA 474

GO:0009950 "dorsal/ventral axis specification" evidence=IGI

GO:0060388 "vitelline envelope" evidence=IDA

GO:0007305 "vitelline membrane formation involved in chorion-containing eggshell formation" evidence=ISM

GO:0008316 "structural constituent of vitelline membrane" evidence=ISM

GO:0035805 "egg coat" evidence=ISM

TAIR|locus:2060848 AT2G30120 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 65/235 (27%), Positives = 114/235 (48%)

Query:    50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMR 109
             ++E +IA QH E+Q L  +NQRLA  H  L+ +L  A+ EL+ L      +K+E E ++R
Sbjct:    38 ILEDRIAIQHREIQSLLNDNQRLAVAHIGLKDQLNVAKRELERLLETAVKVKAEGEAKVR 97

Query:   110 NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ 169
              + +   +MEAE +  + +  E  + +++ Q L   R+EL  ++     ++ +A  +  +
Sbjct:    98 EVYQNALRMEAEARVIDGLGAELGQVRSDVQRLGSDRQELATELAMFDDEMAKAKPNSDR 157

Query:   170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229
                +  E+E LR E    R   E EKK    +L   + MEK    +  E+ KL  EL++ 
Sbjct:   158 AIEVKLEIEILRGEIRKGRAALELEKKTRASNLHHERGMEKTIDHLNREIVKLEEELVD- 216

Query:   230 PNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVV 284
               ++ +A + +       + +       G N  +D YG  QG   P +  T  +V
Sbjct:   217 --LETKAREANAAAEAAPTPSPGLAASYGNNT-DDIYG-GQGRQYPEANGTHELV 267

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|A2VD00 eif3a "Eukaryotic translation initiation factor 3 subunit A" [Xenopus laevis (taxid:8355)]

 Score = 195 (73.7 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 119/453 (26%), Positives = 178/453 (39%)

Query:    50 VMEQKIASQHVEMQKLATENQRLAATHGT-LRQELAAAQHELQILHGQIGGMKSER--EL 106
             V   K + Q V   KL    +RLA      L +     + E +I + +    + +R  E 
Sbjct:   761 VSNLKASRQSVYDAKLKQFQERLAEEKRVRLEERKRQRKEERRISYYRDKEEEEQRLIEE 820

Query:   107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166
             Q++   E   K+E E + AE  + + +  K E Q       EL  +  +  +D +R   D
Sbjct:   821 QLKQEREDREKIENEKREAEQREYQERLKKLEEQERKKRLRELEIEEREKKRDEERRGPD 880

Query:   167 ----VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222
                  Q  P+   +    R+E    RG    E+K      +     + +      + E  
Sbjct:   881 DSFRKQDTPSRWGD----REESGWRRGADPDERKQAPPERDWRSGGQDSKPVKDEDREGD 936

Query:   223 RAELMNAPNVDRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAG 282
                ++          DG    A   S   T  R   ++  EDG G  +G    P      
Sbjct:   937 EDSVLRKDEEQVARGDGDEERAA--SWRGTDDRGPKRSVEEDG-GPRRGFNDEPGPRRGF 993

Query:   283 VVGAGPNTSTSAYAATQSGTPMRAAYDIPRGP--GYEASKGP--GYDASKAP--SYDPTK 336
                 GP          +   P R   D  RGP  G +  +GP  G D  + P    D  +
Sbjct:   994 EDDQGPRRGLD-----EDRGPRRGL-DEDRGPRRGLDEDRGPRRGLDEDRGPRRGLDEDR 1047

Query:   337 GP--SYDPAKGP--GYDPTKGP--GYDAQKGSN--YDAQRGP--NYDIHRGPSYDPQRGL 386
             GP    D  +GP  G D  +GP  G+D  +G    +D  RGP  ++D  RGP    +RG 
Sbjct:  1048 GPRRGLDEDRGPRRGLDEDRGPRRGFDEDRGPRRGFDEDRGPRRDFDEDRGP----RRG- 1102

Query:   387 GYDMQRGPN--YDMQRGP--GYETQRVP--GYDVQRGPV--YEAQRAP--SYIPQRGP-- 434
              +D  RGP   +D  RGP  G++  R P  G+D  RGP   ++  R P   +   RGP  
Sbjct:  1103 -FDEDRGPRRGFDEDRGPRRGFDEDRGPRRGFDDDRGPRRGFDDDRGPRRGFEDDRGPRR 1161

Query:   435 GYDLQRG--QGYDMRRAPSYDPSRGTGFDGAPR 465
             G++  RG  +G++  R P     RG   D  PR
Sbjct:  1162 GFEDDRGPRRGFEDDRGPR----RGFDEDRTPR 1190

GO:0001732 "formation of translation initiation complex" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|A4II09 eif3a "Eukaryotic translation initiation factor 3 subunit A" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 186 (70.5 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 68/224 (30%), Positives = 101/224 (45%)

Query:   267 GVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGP--GYEASKGP-- 322
             G+ +  GP      AG    G           +     R  +D  RGP  G++  +GP  
Sbjct:   981 GLEEDRGPRRGIDDAGP-RRGFEEDRGPRRGIEDDRAPRRGFDDDRGPRRGFDDDRGPRR 1039

Query:   323 GYDASKAP--SYDPTKGP--SYDPAKGP--GYDPTKGP--GYDAQKGSN--YDAQRGPN- 371
             G+D  + P    D  +GP   +D  + P  G+D  +GP  G+D  +G    +D  RGP  
Sbjct:  1040 GFDEDRGPRRGIDDDRGPRRGFDEDRTPRRGFDDDRGPRRGFDDDRGPRRGFDEDRGPRR 1099

Query:   372 -YDIHRGP--SYDPQRG--LGYDMQRGPN--YDMQRGP--GYETQRVP--GYDVQRGPVY 420
              ++  RGP   ++  RG   G++  RGP   ++  RGP  G+E  R P  G+D  RGP  
Sbjct:  1100 GFEDDRGPRRGFEDDRGPRRGFEDDRGPRRGFEDDRGPRRGFEDDRGPRRGFDEDRGP-- 1157

Query:   421 EAQRAPSYIPQRGP--GYDLQRG--QGYDMRRAP--SYDPSRGT 458
               +R   +   RGP  G+D  R   +G+D  R P    D  RG+
Sbjct:  1158 --RRG--FEDDRGPRRGFDEDRTPRRGFDDDRGPRRGLDEDRGS 1197

GO:0001732 "formation of translation initiation complex" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|F1S187 LOC100518332 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 204 (76.9 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 71/225 (31%), Positives = 86/225 (38%)

Query:   228 NAPNV-DRRAADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGA 286
             N P   D R + G + G     E    GR  G+     GYG  +  G      + G  G 
Sbjct:   183 NEPRPEDSRPSGGDFRGRGYGGERGYRGRG-GRGGDRGGYGGDRSGGGYGGDRSGGG-GY 240

Query:   287 GPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGP 346
             G + S   Y   +SG      Y   RG GY   +G GY   +   Y   +   Y   +G 
Sbjct:   241 GGDRSGGGYGGDRSG----GGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRSGGYGGDRGG 296

Query:   347 GYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQR-GPNY--DMQRGPG 403
             GY   +G GY   +G  Y   RG  Y   RG  Y   RG GY   R G  Y  D   G G
Sbjct:   297 GYGGDRGGGYGGDRGGGYGGDRGGGYGGDRG-GYGGDRG-GYGGDRSGGGYGGDRGSGSG 354

Query:   404 YETQRVPGYDVQR-GPVYEAQRAPSYIPQRGPGYDLQRGQGYDMR 447
             Y   R  GY   R G  Y   R+  Y   RG GY  + G   D R
Sbjct:   355 YGGDRSGGYGGDRSGGGYGGDRSGGYGGDRG-GYGGKMGGRNDYR 398

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P11414 POLR2A "DNA-directed RNA polymerase II subunit RPB1" [Cricetulus griseus (taxid:10029)]

 Score = 173 (66.0 bits), Expect = 6.0e-10, P = 6.0e-10
 Identities = 69/236 (29%), Positives = 93/236 (39%)

Query:   228 NAPNVDRRAADGSYGGATG---NSENETSGRPVGQN-AYEDGYGVPQGHGP--PPSATTA 281
             N P +      G   GA G   ++ ++ SG   G + A+    G P   GP  P   +  
Sbjct:    24 NIPGLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPG 83

Query:   282 GVVGAGPNTSTSAYAATQSG--TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPS 339
             G +    + ++ AY     G  TP   +Y  P  P Y  +  P Y  + +P+Y PT  PS
Sbjct:    84 GAMSPSYSPTSPAYEPRSPGGYTPQSPSYS-PTSPSYSPTS-PSYSPT-SPNYSPTS-PS 139

Query:   340 YDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQ 399
             Y P   P Y PT  P Y     S Y +   P+Y     PSY P     Y     P+Y   
Sbjct:   140 YSPTS-PSYSPTS-PSYSPTSPS-Y-SPTSPSYS-PTSPSYSPTSP-SYS-PTSPSYS-P 191

Query:   400 RGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPS 455
               P Y     P Y     P Y +  +PSY P   P Y       Y    +PSY P+
Sbjct:   192 TSPSYSPTS-PSYS-PTSPSY-SPTSPSYSPT-SPSYS-PTSPSYSPT-SPSYSPT 241

GO:0005634 "nucleus" evidence=ISS

GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0004672 "protein kinase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	504
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
pfam13851	201	pfam13851, GAS, Growth-arrest specific micro-tubul	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
pfam07926	132	pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-05
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	5e-05
pfam10473	140	pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of	6e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
pfam04156	186	pfam04156, IncA, IncA protein	8e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	2e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	3e-04
smart00787	312	smart00787, Spc7, Spc7 kinetochore protein	3e-04
pfam06160	559	pfam06160, EzrA, Septation ring formation regulato	3e-04
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
pfam06160	559	pfam06160, EzrA, Septation ring formation regulato	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.001
PRK04778	569	PRK04778, PRK04778, septation ring formation regul	0.001
pfam09789	319	pfam09789, DUF2353, Uncharacterized coiled-coil pr	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	0.002
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
pfam10481	288	pfam10481, Cenp-F_N, Cenp-F N-terminal domain	0.003
COG3883	265	COG3883, COG3883, Uncharacterized protein conserve	0.003
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	0.003
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	0.003
COG0497	557	COG0497, RecN, ATPase involved in DNA repair [DNA	0.003
pfam09730	711	pfam09730, BicD, Microtubule-associated protein Bi	0.003
COG1322	448	COG1322, COG1322, Predicted nuclease of restrictio	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004
pfam12329	74	pfam12329, TMF_DNA_bd, TATA element modulatory fac	0.004
smart00935	140	smart00935, OmpH, Outer membrane protein (OmpH-lik	0.004
TIGR03007	498	TIGR03007, pepcterm_ChnLen, polysaccharide chain l	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE--- 105
           E  E+        +++L    + L      L  ELA  ++EL+ L  +I  ++   E   
Sbjct: 358 EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLS 417

Query: 106 LQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165
            ++ +L E++ ++EAEL+  +    E ++   E + L    EEL  ++ +L ++L     
Sbjct: 418 ERLEDLKEELKELEAELEELQT---ELEELNEELEELEEQLEELRDRLKELERELAELQE 474

Query: 166 DVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN 211
           ++Q+   L  EL SL           E E++        L+ +E  
Sbjct: 475 ELQR---LEKELSSLEARL----DRLEAEQRASQGVRAVLEALESG 513

Length = 1163

>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 18/135 (13%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
           M++        M ++A EN+R       L + L  A+ E++ L  ++   + +++  ++N
Sbjct: 39  MKKNEEHNEKLMAEIAQENKR-------LVEPLKKAEEEVEELRKKLKDYEKDKQ-SLKN 90

Query: 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV--- 167
           L  ++ ++E ELK    +K E +  +   + +   R+EL  K     QD+Q+  T +   
Sbjct: 91  LKARLKELEKELKN---LKWESEVLEQRFEKVERERDELYDKFEAAIQDVQQ-KTGLKNL 146

Query: 168 ---QQIPALLSELES 179
              Q++ AL  ELE 
Sbjct: 147 LLEQKLEALNEELEK 161

This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localisation of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localised to regions of dynein regulation in mammalian cells. Length = 201

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE---LQMRNLTEKIAK 117
            +++L  E + L      L++ L   + EL+ L   +  +K E E    + + L E++ +
Sbjct: 738 RLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEE 797

Query: 118 MEAELKTAEPVKLEFQKSK-----------TEAQNLVVAREELIAKVHQLTQDLQRAHTD 166
           +E EL+ AE      ++              E + L    EEL  K+ +L ++L+    +
Sbjct: 798 LEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKE 857

Query: 167 VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226
           ++++   L ELE+ ++E        E EK+   + L  L   E     +  E+EKLR  L
Sbjct: 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELREL---ESELAELKEEIEKLRERL 914

Query: 227 MNAPNVDRR 235
                   R
Sbjct: 915 EELEAKLER 923

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 14/169 (8%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSER---E 105
           E +E+++ S    + KL  E + L      L++EL   + EL+    ++  ++ E    E
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 106 LQMRNLTEKIAKMEAELKTAE----PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161
            +   L ++I ++E E++  E     ++ E ++ + E + L    EEL A+  +L  +L+
Sbjct: 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELK 880

Query: 162 RAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK 210
               + +++   L ELES   E        + E +   + LE L+   +
Sbjct: 881 ELEEEKEELEEELRELESELAE-------LKEEIEKLRERLEELEAKLE 922

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 18/193 (9%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL--------------HGQI 97
              I  +  E+++L  + + L      L + LA  + EL+ L                QI
Sbjct: 669 NSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728

Query: 98  GGMKSE---RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVH 154
             ++ +    E ++  L E+IA++  EL   E    E ++   EA+  +   E  I ++ 
Sbjct: 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788

Query: 155 QLTQDLQRAHTDV-QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI 213
              + L+     + + +  L +EL  L +E  + R   E  ++        L+ +E+   
Sbjct: 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

Query: 214 TMATEVEKLRAEL 226
            ++ ++E L AE+
Sbjct: 849 ELSEDIESLAAEI 861

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 15/177 (8%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAA-----AQHELQILHGQIGGMKSEREL 106
           EQ+I +   E+++L    + L      L + L       +   +     +I    S+ E 
Sbjct: 750 EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP----EIQAELSKLEE 805

Query: 107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166
           ++  +  ++ ++E +L      K   +K   E Q   +  +E I  + +  ++L      
Sbjct: 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN----- 860

Query: 167 VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223
             +   L  ELE L              KK  ++    L+ +E+    +  ++EK R
Sbjct: 861 -GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 33/166 (19%), Positives = 73/166 (43%), Gaps = 14/166 (8%)

Query: 63  QKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM--RNLTEKIAKMEA 120
            +L+   + +      L +EL   +   +I   Q      E EL+     L E++A++E 
Sbjct: 192 GQLSELLEDIEDLLEALEEELKELKKLEEIQEEQ-----EEEELEQEIEALEERLAELEE 246

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           E +  E +K    + ++     +  REE + ++ +L ++L+     ++++   + ELE  
Sbjct: 247 EKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEE 306

Query: 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226
            +             +   + LE L+ +E+    +  ++EKL +EL
Sbjct: 307 LEG-------LRALLEELEELLEKLKSLEERLEKLEEKLEKLESEL 345

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 18/184 (9%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           +  E+++     E+Q+L  + + L      L +E+   Q EL  L  +I    S  E Q 
Sbjct: 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI----SRLEQQK 304

Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
           + L E++A +E +L+  E    E +             +EL  ++ +L + L+    +++
Sbjct: 305 QILRERLANLERQLEELEAQLEELESKL----------DELAEELAELEEKLEELKEELE 354

Query: 169 QIPALLSELESLRQE----YHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 224
            + A L ELE+  +E            E  +         +  +      +   +E+L  
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414

Query: 225 ELMN 228
               
Sbjct: 415 RRER 418

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 37/190 (19%), Positives = 81/190 (42%), Gaps = 25/190 (13%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL 111
           E+++      +  L  E + L      L QE+   + E++ L  ++     E E ++  L
Sbjct: 799 EEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKL----DELEEELEEL 854

Query: 112 TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIP 171
            +++ +++ EL+  E    E ++ + E + L   +EEL  ++ +L  +L     +++++ 
Sbjct: 855 EKELEELKEELEELE---AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLR 911

Query: 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMAT-----EVEKLRAEL 226
             L ELE                ++   +  E  + +E+ Y          E+E+L  E+
Sbjct: 912 ERLEELE-------------AKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEI 958

Query: 227 MNAPNVDRRA 236
                V+ RA
Sbjct: 959 EALGPVNLRA 968

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 33/180 (18%), Positives = 70/180 (38%), Gaps = 8/180 (4%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSEREL---QM 108
           E +I     ++++L  E + L      LR EL     E   L  ++  ++        ++
Sbjct: 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
            +L E+I ++  ++++      E ++   E ++ + A     A + +    L+    ++ 
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900

Query: 169 -QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227
            ++  L S+   LR+E    R     +       LE L+V   N     +E   L  E  
Sbjct: 901 EELRELESKRSELRRELEELRE----KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 63  QKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL 122
           ++LA    +L      L +EL + ++EL+ L   +  ++ + E   R L E   ++ A  
Sbjct: 674 EELAELEAQLEK----LEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALE 729

Query: 123 KTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQ 182
           +  E ++   ++ + E + L    EEL  ++ +L ++L+     + ++   + ELE  RQ
Sbjct: 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQ 789

Query: 183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT----MATEVEKLRAEL 226
                    E E +     L++L+   ++       +  E+E+L  E+
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 31/187 (16%), Positives = 73/187 (39%), Gaps = 14/187 (7%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           ++ E +   +  E+++     +   A       EL   +  L+ L  ++  ++S     +
Sbjct: 217 KLEEIQEEQEEEELEQEIEALEERLA-------ELEEEKERLEELKARLLEIESLELEAL 269

Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
           +   E++ ++E  L+  E      ++ + E + L    E L A + +L + L++  +  +
Sbjct: 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEE 329

Query: 169 QIPALLSELESLRQEYHHCRGTYEYEKKF-------YNDHLESLQVMEKNYITMATEVEK 221
           ++  L  +LE L  E            K          + LE L+   +  +    ++E+
Sbjct: 330 RLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEE 389

Query: 222 LRAELMN 228
              EL  
Sbjct: 390 AIQELKE 396

Length = 908

>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 21/130 (16%)

Query: 79  LRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKL--EFQKSK 136
           L +E ++ Q EL+    ++   K + E +++ L E + +       A+  K   E  K  
Sbjct: 1   LEEEKSSLQAELK----RLLEKKEDAEEKIQKLQEDLEEQAEIANEAQ-QKYERELVKHA 55

Query: 137 TEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK 196
            + + L   R++L         +L+      ++I  L +E ES + E      ++E +KK
Sbjct: 56  EDIEELQALRKQL--------NELK------KEIAQLKAEAESAQAELSEAEESWEEQKK 101

Query: 197 FYNDHLESLQ 206
              D L  L+
Sbjct: 102 MLEDELSELE 111

The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity. Length = 132

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 50  VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMR 109
            +E++I     E+  LA E  RL      LR+ LA  + +L+ L  Q+  ++S+ +    
Sbjct: 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337

Query: 110 NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV-- 167
            L    A++E +L+  +      +    E +      EEL +++ +L + L+   + V  
Sbjct: 338 EL----AELEEKLEELKEELESLEAELEELEAE---LEELESRLEELEEQLETLRSKVAQ 390

Query: 168 --QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225
              QI +L +E+E L           E  ++   + L+ L+  E   +    E+E+L  E
Sbjct: 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL--QAELEELEEE 448

Query: 226 L 226
           L
Sbjct: 449 L 449

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 18/154 (11%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQEL-------AAAQHELQILHGQIGGMK 101
           E +E++I  +     KL  E   L      LR EL       A  + EL+    ++  +K
Sbjct: 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398

Query: 102 SER-ELQ---------MRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIA 151
            E  EL+         ++ L+E++A + A +   E    E ++ K +    +  +E  + 
Sbjct: 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458

Query: 152 KVHQLTQDLQRAHTDVQQ-IPALLSELESLRQEY 184
           ++       ++   D+++    +  EL  L++E 
Sbjct: 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 27/186 (14%)

Query: 48   PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQ 107
             E +E+++     E+++L  E + L      L +E    + EL+ L  ++  +K E E  
Sbjct: 851  LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910

Query: 108  MRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167
               L E  AK+E         +LE +  + E +      EE       L  +L+R   ++
Sbjct: 911  RERLEELEAKLE---------RLEVELPELEEELE----EEYEDT---LETELER---EI 951

Query: 168  QQIPALLSELES--LR--QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223
            +++   +  L    LR  +EY      YE  K    D  E+     +  + +  E++K +
Sbjct: 952  ERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAK----EKLLEVIEELDKEK 1007

Query: 224  AELMNA 229
             E    
Sbjct: 1008 RERFKE 1013

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 18/172 (10%)

Query: 61  EMQKLATENQRLAATHGT----LRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIA 116
             ++   E +            L + L+  +  LQ L        SE E ++    E++ 
Sbjct: 583 TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL------ELSEAENELEEAEEELE 636

Query: 117 KMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE 176
               +L     ++   Q +  E +  V   E  I +  Q  ++ ++    ++++  L  E
Sbjct: 637 SELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEE 696

Query: 177 LESLRQEYHHCRGTYEYEKKF--YNDHLESLQVMEKNYITMATEVEKLRAEL 226
           LE LR+E        E  KK       +E L+  +     +  E+EKL   L
Sbjct: 697 LEQLREELE------ELLKKLGEIEQLIEELESRKAELEELKKELEKLEKAL 742

Length = 908

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 109 RNLTEKIAKMEAEL---KTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165
           R L +KI ++  EL   K A     + ++ K E   L     E+  K+ +L  + Q  H 
Sbjct: 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYH- 192

Query: 166 DVQQIPALLSELESLRQ---EYH 185
             +++  L  E + LR+   E H
Sbjct: 193 --EEMIKLFEEADELRKEADELH 213

Length = 294

>gnl|CDD|151039 pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of kinetochore protein Cenp-F/LEK1

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 26/149 (17%)

Query: 81  QELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQ 140
           ++L  ++ E  +L  ++  +  EREL+M    +++  +EAE   AE   L+ +  +  A+
Sbjct: 10  EKLKESEREADLLKDKVENL--ERELEMSEENQELVILEAENSKAEVETLKTKIEEM-AE 66

Query: 141 NLVVAREELIAKVHQ---LTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKF 197
           +L     +L+    +   LT+ LQ     V ++  L S  E+L +E              
Sbjct: 67  SLKDLELDLVTVRSEKENLTKQLQEKQERVSELEKLNSSTENLLEE-------------- 112

Query: 198 YNDHLESLQVMEKNYITMATEVEKLRAEL 226
                E +Q+ E+      T VE L+ +L
Sbjct: 113 --KEQEKIQMKEE----SKTAVEMLQTQL 135

Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance. Length = 140

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 28/201 (13%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILH-------GQIGGMKSE 103
           +E+++     E+++   E + L +    LR+EL   Q EL  L        G+I  ++  
Sbjct: 251 LEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310

Query: 104 RELQMRN----------LTEKIAKMEAELKTAEPVKLEFQKSKTE--------AQNLVVA 145
            E               L EKI  ++ EL+  E +  E ++   E         + L   
Sbjct: 311 LEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSAL 370

Query: 146 REELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL 205
            EEL      L ++L        ++  + +ELE L++E        E   +   D  E L
Sbjct: 371 LEELEELFEALREELAELE---AELAEIRNELEELKREIESLEERLERLSERLEDLKEEL 427

Query: 206 QVMEKNYITMATEVEKLRAEL 226
           + +E     + TE+E+L  EL
Sbjct: 428 KELEAELEELQTELEELNEEL 448

Length = 1163

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 32/139 (23%)

Query: 53  QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLT 112
            K   Q V  QKL      L+     L+Q+L+  Q EL+             +L+     
Sbjct: 62  LKAPVQSVRPQKLEELQGELSE----LKQQLSELQEELE-------------DLE----- 99

Query: 113 EKIAKMEAELKTAEPVK----LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
           E+IA++E+EL+  +          +  +   ++L  + +EL  ++ +L QDL+      +
Sbjct: 100 ERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAKELRELRQDLR------E 153

Query: 169 QIPALLSELESLRQEYHHC 187
           ++  L  ELE L++     
Sbjct: 154 EVEELREELERLQENLQRL 172

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 39/193 (20%), Positives = 81/193 (41%), Gaps = 29/193 (15%)

Query: 58  QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSE----------RELQ 107
           +  E++K   E ++L      L++ L   + +L  L  +I  +KSE           E  
Sbjct: 717 KIGEIEK---EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED 773

Query: 108 MRNLTEKIAKMEAELKTAEPVKL---EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164
           +  L E +  +EA L +   +     E  K + E   +     E+  K+++LT + +   
Sbjct: 774 LHKLEEALNDLEARL-SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832

Query: 165 TDVQQIPALLSELE----SLRQEYHHCRGTYEYEKKFYNDHLESLQV----MEKNYITMA 216
            ++Q++     +L+    S+ +E  +  G    +K+   + LE L+     +E     + 
Sbjct: 833 KEIQELQEQRIDLKEQIKSIEKEIENLNG----KKEELEEELEELEAALRDLESRLGDLK 888

Query: 217 TEVEKLRAELMNA 229
            E ++L A+L   
Sbjct: 889 KERDELEAQLREL 901

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 30/164 (18%), Positives = 71/164 (43%), Gaps = 5/164 (3%)

Query: 67  TENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA- 125
            E + L      L  +L   + EL+ L  ++  ++   E ++R   E++ +   ELK   
Sbjct: 667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLE-ELRRQLEELERQLEELKREL 725

Query: 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYH 185
             ++ E ++ ++  + L    EEL  ++ +L + L+    +++ +   L++L+   +E  
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785

Query: 186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229
             R   +  ++   +  E L+  E+    +  E+E L       
Sbjct: 786 EKR---QALQEELEELEEELEEAERRLDALERELESLEQRRERL 826

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 38/182 (20%), Positives = 76/182 (41%), Gaps = 14/182 (7%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL 111
            +++  Q  E+++   E +R  A      ++L +   EL+    ++     E + ++  L
Sbjct: 704 LEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL 763

Query: 112 TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL----QRAHTDV 167
            E++  +E  L     +K E ++ + + Q L    EEL  ++ +  + L    +   +  
Sbjct: 764 EEELESLEEALAK---LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 168 QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227
           Q+   L  E+E L +E        E +     + LE L   EK    +  E+E+L AE  
Sbjct: 821 QRRERLEQEIEELEEE----IEELEEKLDELEEELEEL---EKELEELKEELEELEAEKE 873

Query: 228 NA 229
             
Sbjct: 874 EL 875

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 17/187 (9%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSE-----REL 106
           E++ A    E+++L  E + L      L +   A + EL+    ++  +  E      +L
Sbjct: 493 EKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKL 552

Query: 107 QMRNLTEKIAKME---AELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA 163
           Q++ L E++ ++E    ELK         +  K E + L    +EL  K+ +L + L + 
Sbjct: 553 QLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQL 612

Query: 164 HTDVQQIPAL--LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 221
              +Q +      +ELE   +E          + +       +L+ +E+       +VE+
Sbjct: 613 EELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEE-------KVEE 665

Query: 222 LRAELMN 228
           L AE+  
Sbjct: 666 LEAEIRR 672

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 16/150 (10%)

Query: 79  LRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE 138
           L+ EL   +  L +L      ++  RE ++  L E++ + E EL+         +  + E
Sbjct: 218 LKAELRELELALLVLR-----LEELRE-ELEELQEELKEAEEELEELTA-----ELQELE 266

Query: 139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFY 198
            +      EEL  +V +L ++++    ++  +   +S LE  +Q         E + +  
Sbjct: 267 EK-----LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321

Query: 199 NDHLESLQVMEKNYITMATEVEKLRAELMN 228
              LE L+           E+E+   EL  
Sbjct: 322 EAQLEELESKLDELAEELAELEEKLEELKE 351

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 39/180 (21%), Positives = 76/180 (42%), Gaps = 25/180 (13%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
           M        + +QKL  E  RL      +R+ L  A+ EL+ L+  +       E+++ +
Sbjct: 1   MMNNNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKAL----EALEIELED 56

Query: 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170
           L  +++++E+E++     ++  +  + E +   V  E  +     L  ++Q A    ++I
Sbjct: 57  LENQVSQLESEIQ-----EIRERIKRAEEKLSAVKDERELR---ALNIEIQIAK---ERI 105

Query: 171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230
            +L  EL  L +E        E  K       E L+ +EKN   +A    +L  E+    
Sbjct: 106 NSLEDELAELMEEIEKLEKEIEDLK-------ERLERLEKN---LAEAEARLEEEVAEIR 155

Length = 239

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 37/169 (21%), Positives = 76/169 (44%), Gaps = 12/169 (7%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           E++KL  E + L       ++E+   + EL+ L G    +    E ++R L E+I +++ 
Sbjct: 222 ELEKLEKEVKELEEL----KEEIEELEKELESLEGSKRKL----EEKIRELEERIEELKK 273

Query: 121 ELKTAEP-VK--LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSEL 177
           E++  E  VK   E ++   E   L    EE + ++ ++ + L R   ++  I   + EL
Sbjct: 274 EIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL 333

Query: 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226
           E   +     +   +  +K   +  E  ++ E+       E+E+L+  L
Sbjct: 334 EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE-ELERLKKRL 381

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 31/140 (22%), Positives = 67/140 (47%), Gaps = 17/140 (12%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           E +E+++AS   E++KL  E   L        + L   +  L+ L+ +I  +  E +L+ 
Sbjct: 240 EAIERQLASLEEELEKLTEEISELE-------KRLEEIEQLLEELNKKIKDLGEEEQLR- 291

Query: 109 RNLTEKIAKMEAELKTAEPV----KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164
             + EKI ++EAE+ + E      + E + ++     L    ++L+A++ +L ++++   
Sbjct: 292 --VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349

Query: 165 TDVQQIPALLSELESLRQEY 184
               +   L  E   L++E 
Sbjct: 350 KRRDK---LTEEYAELKEEL 366

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 42/182 (23%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
           M+ +  +   E++ L +E + L       ++ELA A+ +LQ L  +     ++  +++++
Sbjct: 176 MQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSE-QASSADNSVKIKH 234

Query: 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170
           L E++ + E +   AE VK                +E+L+                  QI
Sbjct: 235 LEEELKRYEQD---AEVVK--------------SMKEQLL------------------QI 259

Query: 171 PALLSELESLRQEYHHCR------GTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 224
           P L  EL +LR+E    R         + E +     LE  + M +    +  E EKL  
Sbjct: 260 PELERELAALREENRKLRSMKEDNELLKEELEDLQSRLERFEKMREKLADLELEKEKLEN 319

Query: 225 EL 226
           EL
Sbjct: 320 EL 321

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 22/159 (13%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           E +++ +     + + L  E + L +    LR    A + EL+ L               
Sbjct: 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQL--------------- 191

Query: 109 RNLTEKIAKM-EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167
           + L +++      EL  A   K + +K   E    V   EEL  ++ +L   ++      
Sbjct: 192 KQLEDELEDCDPTELDRA---KEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKK 248

Query: 168 QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206
            ++   ++E E   ++   CRG    E +   + L+ LQ
Sbjct: 249 SELNTEIAEAEKKLEQ---CRGFTFKEIEKLKEQLKLLQ 284

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 312

>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA

 Score = 43.3 bits (103), Expect = 3e-04
 Identities = 35/180 (19%), Positives = 75/180 (41%), Gaps = 29/180 (16%)

Query: 60  VEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS--ERELQMRN-LTEKIA 116
            E+Q L  +  +  A    L  +L  A+ E + +  +I  +    E+E++ +  + + I 
Sbjct: 252 KELQDLKEQIDQNLALLEEL--DLDEAEEENEEIEERIDTLYDILEKEVKAKKFVEKNID 309

Query: 117 KMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE 176
           K+   L+ A              QN     ++L+ ++ +L Q       +++ +  L  +
Sbjct: 310 KLTDFLEHAR------------EQN-----KQLLLELDRLQQSYTLNEDELETVRELEKQ 352

Query: 177 LESLRQEYHHCRGTYEYEKKFYN---DHLES----LQVMEKNYITMATEVEKLRAELMNA 229
           LE L  +Y         +K  Y+   + LE     L+ +EK    ++  ++ LR + + A
Sbjct: 353 LEELEAQYDQLVERIAEKKVAYSELQEELEEIEKQLEEIEKEQEELSESLQGLRKDELEA 412

During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. Length = 559

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 45/214 (21%)

Query: 61  EMQK----LATENQRLAA----THGTLRQELAA---AQHELQILHGQIGGMKSERELQM- 108
           E++K    L  E   L A        L  E +    AQ EL  +  +I    +E+E +  
Sbjct: 458 ELEKARRRLEAEKDELQAALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEFE 517

Query: 109 ---RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ---R 162
              +N    I  ++A L+ AE       K K EA  L   +++L   +++L   L    +
Sbjct: 518 NTRKNHQRAIESLQATLE-AE------AKGKAEASRL---KKKLEGDINELEIALDHANK 567

Query: 163 AHTDVQ-QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 221
           A+ + Q  +     +++ L+          E E++   D  E L V E+    +  E+E+
Sbjct: 568 ANAEAQKNVKKYQQQVKELQT-------QVEEEQRAREDAREQLAVAERRATALEAELEE 620

Query: 222 LRAELMNAPNVDRRAADGSYGGATGNSENETSGR 255
           LR+ L  A    R+ A+            E S R
Sbjct: 621 LRSALEQA-ERARKQAETEL--------AEASER 645

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 40/200 (20%), Positives = 85/200 (42%), Gaps = 33/200 (16%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLA-------ATHGTLRQELAAAQHELQILH------- 94
           E +E+KIA     + +L  E + L             L ++++A + +L  L        
Sbjct: 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746

Query: 95  ---GQIGGMKSERELQMRNLTEKIAKMEAELKTAEP----VKLEFQKSKTEAQNLVVARE 147
               Q+    +E E ++  L E++ + E EL  AE     ++ + ++ K E + L  A +
Sbjct: 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806

Query: 148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207
           EL A++  L ++       ++    L   + +  +         E + +  ++ +ESL  
Sbjct: 807 ELRAELTLLNEEAANLRERLES---LERRIAATERRL----EDLEEQIEELSEDIESLAA 859

Query: 208 -MEKNYITMATEVEKLRAEL 226
            +E+    +   +E+L +EL
Sbjct: 860 EIEE----LEELIEELESEL 875

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 33/136 (24%)

Query: 51  MEQKIASQHVEMQKL--ATENQRLAATHG-----TLRQELAAAQHELQILHGQIGGMKSE 103
           +E+ I     E+ +L  + E  R            LR+ L A             G  + 
Sbjct: 113 IEEDIEQILEELNELKESEEKNRKEVEELKDKYRELRKTLLAKSFSY--------G-PAL 163

Query: 104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA 163
            EL+     +++ ++E E +    V+L      TE+ + + ARE L+ K+ + T  L+  
Sbjct: 164 DELE-----KQLDELEEEFEQF--VEL------TESGDYLEAREVLL-KLEEETDALE-- 207

Query: 164 HTDVQQIPALLSELES 179
              +++IP LL EL++
Sbjct: 208 -QKMEEIPPLLKELQN 222

During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. Length = 559

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 13/133 (9%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM----------KSERELQMRN 110
           E+ KL  E  R+ A    + Q+L     E + L  +I  +              E ++ N
Sbjct: 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858

Query: 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170
           L  K  ++E EL+  E    + +       +L   R+EL A++ +L + ++     +++ 
Sbjct: 859 LNGKKEELEEELEELEAALRDLESRL---GDLKKERDELEAQLRELERKIEELEAQIEKK 915

Query: 171 PALLSELESLRQE 183
              LSEL++  + 
Sbjct: 916 RKRLSELKAKLEA 928

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 28/179 (15%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLR---QELAAAQHELQILHGQIGGMKSERELQM 108
           E++++    E+++L  E +        L+   +EL     ELQ             EL  
Sbjct: 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQ------------EELL- 291

Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
             L E+I ++E E+     ++   ++ + E + L    EEL  K+  L ++L+   T ++
Sbjct: 292 -ELKEEIEELEGEISL---LRERLEELENELEELEERLEELKEKIEALKEELEERETLLE 347

Query: 169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL-QVMEKNYITMATEVEKLRAEL 226
           ++  LL+ELE  ++E        E +     + LE L + + +    +  E+ ++R EL
Sbjct: 348 ELEQLLAELEEAKEE-------LEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 15/152 (9%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           E +E ++     +++   T   ++A     L  ++A+  +E++ L  ++  ++  RE   
Sbjct: 368 EELESRLEELEEQLE---TLRSKVAQ----LELQIASLNNEIERLEARLERLEDRRERLQ 420

Query: 109 RNLTEKIAKME----AELKTAEPVKLEFQKSKTEAQNLVVAREELIAK-VHQLTQDLQRA 163
           + + E + K+E     EL+       E  +   E    +    E + + + +  Q L  A
Sbjct: 421 QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480

Query: 164 HTDVQQIPALLSELESLRQEYHHCRGTYEYEK 195
             ++ Q+ A L  LE L++      G  E  K
Sbjct: 481 ERELAQLQARLDSLERLQENL---EGFSEGVK 509

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 35/187 (18%), Positives = 80/187 (42%), Gaps = 36/187 (19%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSEREL--QMR 109
           E++I      +++L  + +RL      L+++L   +  L+ L  +    +  +    ++ 
Sbjct: 320 EEEINGIEERIKELEEKEERL----EELKKKLKELEKRLEELEERHELYEEAKAKKEELE 375

Query: 110 NLTEKIA-----KMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQ---DLQ 161
            L +++      K+E EL+  E  K E ++             ++ A++ +L +   +L+
Sbjct: 376 RLKKRLTGLTPEKLEKELEELEKAKEEIEE----------EISKITARIGELKKEIKELK 425

Query: 162 RAHTDVQQIPALLSELESLRQEYHHCRG--TYEYEKKFYNDHLESLQVMEKNYITMATEV 219
           +A          + EL+  + +   C    T E+ K+   ++   L+ +EK    +  + 
Sbjct: 426 KA----------IEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKE 475

Query: 220 EKLRAEL 226
            KLR EL
Sbjct: 476 RKLRKEL 482

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 30/160 (18%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 77  GTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSK 136
               +EL     E+           +E   ++  L E++ K+E E+K  E +K E ++ +
Sbjct: 196 KEKEKELEEVLREI-----------NEISSELPELREELEKLEKEVKELEELKEEIEELE 244

Query: 137 TEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK 196
            E ++L  ++ +L  K+ +L + ++    +++++   + EL+ L+++       Y    +
Sbjct: 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAE----EYIKLSE 300

Query: 197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA 236
           FY ++L+ L+ +EK    +  E+  +   +      + R 
Sbjct: 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340

Length = 880

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 13/120 (10%)

Query: 50  VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMR 109
           + +   A +     +L    Q LA     L++ELA  Q +L  L  +      E + ++ 
Sbjct: 58  LSDTPSARE-----RLPELQQELAE----LQEELAELQEQLAELQQEN----QELKQELS 104

Query: 110 NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ 169
            L  ++ +++ EL   + +     +   E + L     EL  +   L  + +R   + Q+
Sbjct: 105 TLEAELERLQKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQR 164

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 32/179 (17%), Positives = 73/179 (40%), Gaps = 29/179 (16%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS--ERELQMRN-LTEKIAK 117
           E+Q L  +     A    L  +L  A+ + + +  +I  +    ERE++ R  + +    
Sbjct: 257 EIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDT 314

Query: 118 MEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSEL 177
           +   L+              + QN     +EL  ++ ++ Q      ++++ +  L  +L
Sbjct: 315 LPDFLE------------HAKEQN-----KELKEEIDRVKQSYTLNESELESVRQLEKQL 357

Query: 178 ESLRQEYHHCRGTYEYEKKFY-------NDHLESLQVMEKNYITMATEVEKLRAELMNA 229
           ESL ++Y         ++  Y        + L+ L+ +EK    ++  ++ LR + + A
Sbjct: 358 ESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEA 416

Length = 569

>gnl|CDD|220404 pfam09789, DUF2353, Uncharacterized coiled-coil protein (DUF2353)

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 29/166 (17%)

Query: 42  FDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG--- 98
              M      +++  SQ +E  +   ENQ+L+     LRQ  A  Q ++++L   I    
Sbjct: 56  QGDMKIKPGTKRQDLSQLLEKYR--EENQQLSTDVQELRQRKAELQGDIKLLRQTIAQQR 113

Query: 99  ----GMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVH 154
               G       + RN  + ++++E   +  + ++ + +    E + +++ R+E   K H
Sbjct: 114 VEFMGGGVRESFEERN--DLVSQLEKLREKCKQLESDLRSLLDEKEEVLMERDEYQRKAH 171

Query: 155 QLTQDL-------QRAHTDV-----------QQIPALLSELESLRQ 182
           +L  +L        R   DV           ++I  L  E E ++ 
Sbjct: 172 RLNNELSYLLGGDPRRVVDVDALVMENRYLKEKINTLEEESELIKM 217

Members of this family of uncharacterized proteins have no known function. Length = 319

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 24/138 (17%)

Query: 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162
            R+  +   T ++ ++E ELK  E  + + +K   E + ++    ELI           +
Sbjct: 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI-----------K 497

Query: 163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEK------------KFYNDHLESLQVMEK 210
                +Q+  L  +L+    E    +   EYEK            K     LE L+ ++K
Sbjct: 498 LKELAEQLKELEEKLKKYNLEELE-KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKK 556

Query: 211 NYITMATEVEKLRAELMN 228
               +  ++++L  EL  
Sbjct: 557 KLAELEKKLDELEEELAE 574

Length = 880

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 23/194 (11%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           E   +++ SQ  E+Q    E QR          +L + +  LQ  +  +     E E Q+
Sbjct: 179 EKKAKQLESQLSELQVKLDELQRQ-------LNDLTSQKSRLQSENSDLTRQLEEAEAQV 231

Query: 109 RNLTEKIAKMEAELKTA---------EPVKL--EFQKSKTEAQNLVVAREELIAKVHQLT 157
            NL++  +++E++L+ A         E   L  + ++ + +  +L    EE      +L 
Sbjct: 232 SNLSKLKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELE 291

Query: 158 QDLQRAHTDVQQIPALL-SELESLRQEYHHCRGTYEYEKKFYNDHLESLQV----MEKNY 212
           + L +A+ ++QQ  +   SE     +E    +     +     +  E+       +EK  
Sbjct: 292 RQLSKANAEIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTK 351

Query: 213 ITMATEVEKLRAEL 226
             + +E+E L+ EL
Sbjct: 352 SRLQSELEDLQIEL 365

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           E+QK   E + +       RQ LA AQ EL  L  Q   +++     ++ L E+  ++EA
Sbjct: 110 ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR----LKTLAEQRRQLEA 165

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           + ++ +  + + Q S T+   L     +L  +  Q+ Q+ Q   T      A   EL   
Sbjct: 166 QAQSLQASQKQLQASATQ---LKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARR 222

Query: 181 RQ 182
             
Sbjct: 223 AA 224

Length = 499

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 24/141 (17%), Positives = 57/141 (40%), Gaps = 17/141 (12%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQEL-------AAAQHELQILHGQIGGMKSE 103
           +E+ + S  +   +   E            ++L          Q  L+ L  ++  +++E
Sbjct: 612 LEELLQSLELSEAENELEEAEEELES--ELEKLNLQAELEELLQAALEELEEKVEELEAE 669

Query: 104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA 163
              +     E   ++E +L+  E ++ E ++ + E        EEL+ K+ ++ Q ++  
Sbjct: 670 IR-RELQRIENEEQLEEKLEELEQLEEELEQLREE-------LEELLKKLGEIEQLIEEL 721

Query: 164 HTDVQQIPALLSELESLRQEY 184
            +   ++  L  ELE L +  
Sbjct: 722 ESRKAELEELKKELEKLEKAL 742

Length = 908

>gnl|CDD|119001 pfam10481, Cenp-F_N, Cenp-F N-terminal domain

 Score = 39.4 bits (91), Expect = 0.003
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL 111
           +QK+ ++  E   L  ENQRL      L +      HELQ+   Q+    + +E Q+ + 
Sbjct: 52  KQKVENEKTEGANLKRENQRLMEICEHLEKTKQKISHELQVKESQV----NFQEGQLNSC 107

Query: 112 TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVA 145
            ++I K+E ELK     K E ++S+  AQ+  V+
Sbjct: 108 KKQIEKLEQELKRC---KSELERSQQAAQSADVS 138

Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal par to f the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein. Length = 288

>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL 111
           ++KI  Q  E +K   E Q   A      + L A Q+EL+     +   K+E+   +  L
Sbjct: 146 DKKILEQQKEDKKSLEEKQ---AALEDKLETLVALQNELETQLNSLNSQKAEKNALIAAL 202

Query: 112 TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQD-LQRAHTDVQQ 169
             K A    E K A    LE QK+  EA     A++E  AK     Q  LQ A T  Q 
Sbjct: 203 AAKEASALGE-KAA----LEEQKALAEAAAAEAAKQEAAAKAAAQEQAALQAAATAAQP 256

Length = 265

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 13/152 (8%)

Query: 77  GTLRQELAAAQHELQILHGQIGGMKSERELQMRNLT-EKIAKMEAELKTAEPVKLEFQKS 135
               + L  A++E+  L  +    +++R    + +  E+ A    + K  +    E  + 
Sbjct: 241 KEFEKMLEKAENEIYRLQSRCDTSEADRNRLDKEVEAERSALAAMKAKC-DRAAQELSRK 299

Query: 136 KTEAQNLVVAREELIAKVHQLTQDLQRAHTDV---QQIPALL-SELESLRQEYHHCRGTY 191
           KTE   L    E L  +   + Q L +   D+   +Q  A+L +E+++LR E        
Sbjct: 300 KTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTEVDALRYEL------- 352

Query: 192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223
           E +         SLQ  ++   T A E+E +R
Sbjct: 353 ERKHNTLTKKTASLQAAQEEKATYAGEIEDMR 384

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 17/118 (14%)

Query: 79  LRQELAAAQHELQILHGQIGG---MKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKS 135
           L +E++     L  L+ QI     + S      ++L + +A + A L  AE  +   Q  
Sbjct: 44  LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103

Query: 136 KTEAQNLVVAREELIAKVHQLTQDL---------QRAHTDV--QQIPALLSELESLRQ 182
             E      A      +  +L Q+L           A  ++  QQI AL  +L +L  
Sbjct: 104 LAELAG---AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA 158

Length = 343

>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 25/175 (14%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM-RNLTEKIAKME 119
           E ++L  E +RL+     L + +  A   L++L G+   + +   L       E +++ +
Sbjct: 206 EDEELEEERKRLS-NSEKLAEAIQNA---LELLSGEDDTVSALSLLGRALEALEDLSEYD 261

Query: 120 AELKTAEPVKLEFQKSKTEAQN-LVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELE 178
            +L        E  +   EA   L  A EEL A + +L  D  R    ++++   L  L+
Sbjct: 262 GKLS-------ELAELLEEALYELEEASEELRAYLDELEFDPNR----LEEVEERLFALK 310

Query: 179 SLRQEYHHCRGT----YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229
           SL ++Y     T     EY  K   + L  L   E++   +  EV+KL+AEL+ A
Sbjct: 311 SLARKYG---VTIEDLLEYLDKIKEE-LAQLDNSEESLEALEKEVKKLKAELLEA 361

Length = 557

>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 12/121 (9%)

Query: 110 NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQ-NLVVAREELI---AKVHQLTQDLQRAHT 165
           NL+E I K++ +L+  E  K     +  E Q  L  +   L     KV++LT+ L  A  
Sbjct: 257 NLSE-IQKLKQQLEQVEREKASLLANLQELQTQLEQSEGALSEQHEKVNRLTEHLN-ALR 314

Query: 166 DVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225
           ++Q        L+S +    H  G Y      Y   +   +++E  Y    +EV +L+AE
Sbjct: 315 NLQASKEQQDGLDSEKDRGSHEDGDY------YEVDINGPEILECKYRVAVSEVGELKAE 368

Query: 226 L 226
           L
Sbjct: 369 L 369

BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER). For full functioning they bind with GSK-3beta pfam05350 to maintain the anchoring of microtubules to the centromere. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells. Length = 711

>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 27/142 (19%), Positives = 57/142 (40%), Gaps = 20/142 (14%)

Query: 49  EVMEQKIASQHVEMQKLATE-NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQ 107
               +++ +    +Q L  E  Q L      L+Q+L  ++ +LQ+L         E   Q
Sbjct: 51  RAEAEQLRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQLLI--------ESLAQ 102

Query: 108 MRN-LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQD-----LQ 161
           + +   E   ++  EL          + ++   + L+    E++ K  +  +       +
Sbjct: 103 LSSEFQELANEIFEELNRR-----LAELNQQNLKQLLKPLREVLEKFREQLEQRIHESAE 157

Query: 162 RAHTDVQQIPALLSELESLRQE 183
              T +++I  LL E++ L QE
Sbjct: 158 ERSTLLEEIDRLLGEIQQLAQE 179

Length = 448

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 7/159 (4%)

Query: 74  ATHGTL--RQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE 131
                L  R+E+   + +++ L  +I   + E+ L    L +++ ++E EL+       E
Sbjct: 668 TNSSILERRREIEELEEKIEELEEKI--AELEKALAE--LRKELEELEEELEQLRKELEE 723

Query: 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ-QIPALLSELESLRQEYHHCRGT 190
             +  +  +  +   E  + ++ +    L +  T+++ +I  L   LE   +E       
Sbjct: 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783

Query: 191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229
            E  +       E L+ + +    +  E+  L  E  N 
Sbjct: 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 30/182 (16%)

Query: 49   EVMEQKIASQHVEMQKLATENQR---------LAATHGTLRQELAAAQHELQILHGQIGG 99
            E +E++I  Q ++ Q++  + Q          L      L +EL   +  L+ L  ++G 
Sbjct: 829  EYLEKEI--QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886

Query: 100  MKSER---ELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAR-EELIAKVHQ 155
            +K ER   E Q+R L  KI ++EA+++     +L   K+K EA    ++  E+   +  +
Sbjct: 887  LKKERDELEAQLRELERKIEELEAQIEKKR-KRLSELKAKLEALEEELSEIEDPKGEDEE 945

Query: 156  LTQDLQRAHTDVQQIPALLSELESLR-------QEYHHCRGTYEYEKKFYNDHLESLQVM 208
            + ++         ++  +  E+ +L        QE       YE   K  ++  E    +
Sbjct: 946  IPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQE-------YEEVLKRLDELKEKRAKL 998

Query: 209  EK 210
            E+
Sbjct: 999  EE 1000

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|221533 pfam12329, TMF_DNA_bd, TATA element modulatory factor 1 DNA binding

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 15/77 (19%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSEREL--QMR 109
           +++IA    E +KL+ +  +   T   LR +    +             K   EL  ++ 
Sbjct: 11  DEQIAQLMEEGEKLSKKELKHNNTIKKLRAKNKELE-------------KEIAELKKKLE 57

Query: 110 NLTEKIAKMEAELKTAE 126
            L +++  +E  LK AE
Sbjct: 58  KLEKELENLEERLKRAE 74

This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal and plant cells. Length = 74

>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like)

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 15/109 (13%)

Query: 53  QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLT 112
           QKI  +    +      ++L       + EL   + ELQ        +K + +     L+
Sbjct: 7   QKILQESPAGKAA---QKQLEKEFKKRQAELEKLEKELQ-------KLKEKLQKDAATLS 56

Query: 113 EK-IAKMEAELKTAEPVKLEFQKSKTEAQN-LVVAREELIAKVHQLTQD 159
           E    K E EL+       EFQ+ + + Q  L   ++E + K+      
Sbjct: 57  EAAREKKEKELQKKV---QEFQRKQQKLQQDLQKRQQEELQKILDKINK 102

This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140

>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 20/184 (10%)

Query: 49  EVMEQKIASQHVEMQKLATEN-QRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQ 107
           +  E+K+ +    ++    EN   L    G    E++ AQ EL+              L+
Sbjct: 171 KTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELE-----------AARLE 219

Query: 108 MRNLTEKIAKMEAELKTAEPVKL-EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166
           +     +   ++ +L   EPV L     + +E    +   E L  ++  L       H D
Sbjct: 220 LNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRI---EALEKQLDALRLRYTDKHPD 276

Query: 167 VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV----MEKNYITMATEVEKL 222
           V      +++LE  ++E    +       +  N   + LQ+     E    ++   V +L
Sbjct: 277 VIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAEL 336

Query: 223 RAEL 226
            A +
Sbjct: 337 TARI 340

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 498

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	504
PRK11637	428	AmiB activator; Provisional	99.07
PRK11637	428	AmiB activator; Provisional	99.02
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	99.01
COG4372	499	Uncharacterized protein conserved in bacteria with	98.99
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.92
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.91
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.89
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.89
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.89
COG4942	420	Membrane-bound metallopeptidase [Cell division and	98.89
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.88
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.85
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.82
COG4942	420	Membrane-bound metallopeptidase [Cell division and	98.81
PHA02562	562	46 endonuclease subunit; Provisional	98.77
PHA02562	562	46 endonuclease subunit; Provisional	98.75
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.75
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.74
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.72
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.71
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.7
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.68
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.68
COG4372	499	Uncharacterized protein conserved in bacteria with	98.67
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.66
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.66
PRK02224	880	chromosome segregation protein; Provisional	98.65
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.63
PRK03918	880	chromosome segregation protein; Provisional	98.63
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.63
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.62
PF14662	193	CCDC155: Coiled-coil region of CCDC155	98.62
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.62
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.62
PRK02224	880	chromosome segregation protein; Provisional	98.61
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.61
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.61
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.6
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.57
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	98.57
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	98.57
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.57
PRK03918	880	chromosome segregation protein; Provisional	98.57
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.54
PRK09039	343	hypothetical protein; Validated	98.53
PF14662	193	CCDC155: Coiled-coil region of CCDC155	98.48
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	98.48
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.48
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.48
PRK04863	1486	mukB cell division protein MukB; Provisional	98.47
KOG2991	330	consensus Splicing regulator [RNA processing and m	98.47
PRK04863	1486	mukB cell division protein MukB; Provisional	98.46
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.45
PRK09039	343	hypothetical protein; Validated	98.45
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.45
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.44
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	98.43
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.41
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.39
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	98.38
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	98.37
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.36
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.34
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	98.34
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	98.33
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.32
KOG1003	205	consensus Actin filament-coating protein tropomyos	98.32
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.32
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.32
KOG0979	1072	consensus Structural maintenance of chromosome pro	98.32
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	98.32
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	98.31
KOG1999	1024	consensus RNA polymerase II transcription elongati	98.31
COG5185	622	HEC1 Protein involved in chromosome segregation, i	98.3
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.29
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	98.29
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.29
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	98.28
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.28
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.27
PRK01156	895	chromosome segregation protein; Provisional	98.27
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	98.25
PRK04778	569	septation ring formation regulator EzrA; Provision	98.24
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	98.23
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	98.23
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	98.23
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	98.23
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.22
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	98.21
COG5185	622	HEC1 Protein involved in chromosome segregation, i	98.21
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	98.2
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	98.2
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	98.2
KOG0979	1072	consensus Structural maintenance of chromosome pro	98.2
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	98.2
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	98.19
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.19
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.18
KOG0963	629	consensus Transcription factor/CCAAT displacement	98.18
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	98.18
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.17
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	98.17
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.16
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.16
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	98.16
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	98.16
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.15
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	98.14
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	98.14
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	98.14
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	98.13
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	98.13
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.12
PRK04778	569	septation ring formation regulator EzrA; Provision	98.11
KOG1003	205	consensus Actin filament-coating protein tropomyos	98.11
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	98.1
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	98.09
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	98.09
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	98.07
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	98.06
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	98.06
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	98.06
KOG0249	916	consensus LAR-interacting protein and related prot	98.04
KOG0963	629	consensus Transcription factor/CCAAT displacement	98.04
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	98.04
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	98.04
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	98.03
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	98.03
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	98.03
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.03
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	98.02
KOG4673	961	consensus Transcription factor TMF, TATA element m	98.01
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	98.01
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.99
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	97.99
KOG0249	916	consensus LAR-interacting protein and related prot	97.98
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.98
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	97.98
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	97.98
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.97
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	97.97
PF13514	1111	AAA_27: AAA domain	97.97
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.96
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	97.96
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	97.95
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.95
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.94
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	97.93
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	97.91
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	97.9
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	97.9
PRK11281	1113	hypothetical protein; Provisional	97.9
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.89
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	97.89
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	97.89
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	97.89
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.87
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	97.87
COG4477	570	EzrA Negative regulator of septation ring formatio	97.87
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	97.85
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	97.85
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	97.85
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.84
KOG1103	561	consensus Predicted coiled-coil protein [Function	97.84
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	97.83
PF13514	1111	AAA_27: AAA domain	97.83
PRK10698	222	phage shock protein PspA; Provisional	97.83
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.82
PRK10929	1109	putative mechanosensitive channel protein; Provisi	97.81
KOG2991	330	consensus Splicing regulator [RNA processing and m	97.81
PRK10246	1047	exonuclease subunit SbcC; Provisional	97.8
KOG0260	1605	consensus RNA polymerase II, large subunit [Transc	97.8
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	97.8
PRK10869	553	recombination and repair protein; Provisional	97.79
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	97.79
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	97.79
PF12815	123	CTD: Spt5 C-terminal nonapeptide repeat binding Sp	97.78
PRK10929	1109	putative mechanosensitive channel protein; Provisi	97.78
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.78
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	97.77
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	97.77
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	97.77
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.77
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	97.76
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	97.74
PRK11281	1113	hypothetical protein; Provisional	97.74
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	97.73
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	97.7
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	97.69
KOG1937	521	consensus Uncharacterized conserved protein [Funct	97.67
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.66
PRK10246	1047	exonuclease subunit SbcC; Provisional	97.66
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	97.66
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	97.64
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	97.64
PF13166	712	AAA_13: AAA domain	97.64
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	97.64
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.62
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	97.61
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	97.6
PLN03188	1320	kinesin-12 family protein; Provisional	97.6
KOG1937	521	consensus Uncharacterized conserved protein [Funct	97.59
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	97.59
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	97.59
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	97.58
KOG0993	542	consensus Rab5 GTPase effector Rabaptin-5 [Intrace	97.58
PRK10869	553	recombination and repair protein; Provisional	97.57
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	97.57
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	97.57
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	97.56
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	97.56
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	97.55
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	97.55
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.55
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	97.54
KOG4807	593	consensus F-actin binding protein, regulates actin	97.54
PF12815	123	CTD: Spt5 C-terminal nonapeptide repeat binding Sp	97.53
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	97.53
KOG4807	593	consensus F-actin binding protein, regulates actin	97.53
KOG4572	1424	consensus Predicted DNA-binding transcription fact	97.53
PRK10361	475	DNA recombination protein RmuC; Provisional	97.52
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	97.51
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	97.51
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	97.51
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	97.5
COG4477	570	EzrA Negative regulator of septation ring formatio	97.5
PLN02939	977	transferase, transferring glycosyl groups	97.5
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	97.49
PLN02939	977	transferase, transferring glycosyl groups	97.49
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	97.49
PF13166	712	AAA_13: AAA domain	97.46
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.45
KOG1850	391	consensus Myosin-like coiled-coil protein [Cytoske	97.44
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	97.42
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	97.42
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.41
PF08580	683	KAR9: Yeast cortical protein KAR9; InterPro: IPR01	97.41
PRK11519	719	tyrosine kinase; Provisional	97.4
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	97.4
PF00015	213	MCPsignal: Methyl-accepting chemotaxis protein (MC	97.4
cd07664	234	BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.4
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	97.4
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	97.39
PF03915	424	AIP3: Actin interacting protein 3; InterPro: IPR02	97.39
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	97.39
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	97.39
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	97.39
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	97.39
PRK10698	222	phage shock protein PspA; Provisional	97.37
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.37
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	97.36
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	97.35
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	97.35
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	97.35
cd07667	240	BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of	97.35
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	97.33
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	97.33
COG2433	652	Uncharacterized conserved protein [Function unknow	97.33
PF15294	278	Leu_zip: Leucine zipper	97.32
PF01442	202	Apolipoprotein: Apolipoprotein A1/A4/E domain; Int	97.32
smart00806	426	AIP3 Actin interacting protein 3. Aip3p/Bud6p is a	97.3
PF14992	280	TMCO5: TMCO5 family	97.3
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	97.29
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	97.29
COG2433	652	Uncharacterized conserved protein [Function unknow	97.29
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	97.28
PF14988	206	DUF4515: Domain of unknown function (DUF4515)	97.28
PF05276	239	SH3BP5: SH3 domain-binding protein 5 (SH3BP5); Int	97.27
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.27
cd07627	216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	97.27
cd00176	213	SPEC Spectrin repeats, found in several proteins i	97.26
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	97.25
KOG1103	561	consensus Predicted coiled-coil protein [Function	97.24
cd07627	216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	97.24
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	97.24
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	97.23
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.22
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	97.2
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	97.19
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	97.18
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	97.16
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	97.16
KOG3958	371	consensus Putative dynamitin [Cytoskeleton]	97.14
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	97.14
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	97.11
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	97.11
COG3096	1480	MukB Uncharacterized protein involved in chromosom	97.11
COG3096	1480	MukB Uncharacterized protein involved in chromosom	97.08
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	97.08
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	97.07
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.07
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	97.06
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	97.05
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	97.05
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	97.05
cd07624	200	BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o	97.04
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	97.04
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	97.03
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	97.02
KOG4677	554	consensus Golgi integral membrane protein [Intrace	97.02
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	97.01
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	97.01
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	97.01
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	97.01
KOG0993	542	consensus Rab5 GTPase effector Rabaptin-5 [Intrace	97.01
KOG4302	660	consensus Microtubule-associated protein essential	97.01
PRK11519	719	tyrosine kinase; Provisional	97.0
KOG2196	254	consensus Nuclear porin [Nuclear structure]	97.0
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	96.99
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	96.99
PF13805	271	Pil1: Eisosome component PIL1; PDB: 3PLT_B.	96.98
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	96.96
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	96.95
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	96.94
KOG1850	391	consensus Myosin-like coiled-coil protein [Cytoske	96.93
PF15294	278	Leu_zip: Leucine zipper	96.91
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	96.89
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	96.89
KOG0992	613	consensus Uncharacterized conserved protein [Funct	96.89
PRK10884	206	SH3 domain-containing protein; Provisional	96.88
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	96.88
COG1322	448	Predicted nuclease of restriction endonuclease-lik	96.86
KOG1655	218	consensus Protein involved in vacuolar protein sor	96.85
KOG4637	464	consensus Adaptor for phosphoinositide 3-kinase [S	96.85
COG3206	458	GumC Uncharacterized protein involved in exopolysa	96.84
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	96.84
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	96.84
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	96.83
KOG4687	389	consensus Uncharacterized coiled-coil protein [Fun	96.83
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.83
cd07623	224	BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of	96.82
PRK10476	346	multidrug resistance protein MdtN; Provisional	96.81
KOG2685	421	consensus Cystoskeletal protein Tektin [Cytoskelet	96.81
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	96.81
PF12252	1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	96.79
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	96.79
COG3206	458	GumC Uncharacterized protein involved in exopolysa	96.79
KOG2008	426	consensus BTK-associated SH3-domain binding protei	96.78
PF14992	280	TMCO5: TMCO5 family	96.77
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	96.76
PLN03188	1320	kinesin-12 family protein; Provisional	96.76
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	96.75
KOG2273	503	consensus Membrane coat complex Retromer, subunit	96.74
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	96.74
PF12252	1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	96.73
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	96.72
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	96.71
cd07664	234	BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S	96.7
PTZ00464	211	SNF-7-like protein; Provisional	96.7
KOG0972	384	consensus Huntingtin interacting protein 1 (Hip1)	96.68
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	96.68
PF14735	238	HAUS4: HAUS augmin-like complex subunit 4	96.66
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	96.63
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	96.62
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	96.62
PRK03947	140	prefoldin subunit alpha; Reviewed	96.62
KOG4687	389	consensus Uncharacterized coiled-coil protein [Fun	96.61
PF05149	289	Flagellar_rod: Paraflagellar rod protein; InterPro	96.6
COG4487	438	Uncharacterized protein conserved in bacteria [Fun	96.6
PF04740	204	LXG: LXG domain of WXG superfamily; InterPro: IPR0	96.6
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	96.59
PTZ00464	211	SNF-7-like protein; Provisional	96.59
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	96.59
PRK10476	346	multidrug resistance protein MdtN; Provisional	96.58
cd00176	213	SPEC Spectrin repeats, found in several proteins i	96.58
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	96.58
cd07665	234	BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S	96.57
PF04108	412	APG17: Autophagy protein Apg17 ; InterPro: IPR0072	96.57
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	96.57
KOG0288	459	consensus WD40 repeat protein TipD [General functi	96.56
KOG4677	554	consensus Golgi integral membrane protein [Intrace	96.55
COG4717	984	Uncharacterized conserved protein [Function unknow	96.55
COG4026	290	Uncharacterized protein containing TOPRIM domain,	96.54
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	96.52
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	96.52
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	96.52
KOG3647	338	consensus Predicted coiled-coil protein [General f	96.51
KOG2196	254	consensus Nuclear porin [Nuclear structure]	96.5
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	96.49
PF04108	412	APG17: Autophagy protein Apg17 ; InterPro: IPR0072	96.49
PF06120	301	Phage_HK97_TLTM: Tail length tape measure protein;	96.48
KOG2751	447	consensus Beclin-like protein [Signal transduction	96.47
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	96.46
cd07599	216	BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o	96.46
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	96.46
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	96.46
COG5293	591	Predicted ATPase [General function prediction only	96.44
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	96.44
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	96.44
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	96.43
PF05276	239	SH3BP5: SH3 domain-binding protein 5 (SH3BP5); Int	96.43
cd07648	261	F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am	96.43
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	96.42
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	96.42
cd07598	211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	96.4
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	96.38
PF13949	296	ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HI	96.36
PRK09343	121	prefoldin subunit beta; Provisional	96.36
KOG2685	421	consensus Cystoskeletal protein Tektin [Cytoskelet	96.35
PF11172	201	DUF2959: Protein of unknown function (DUF2959); In	96.34
COG3264	835	Small-conductance mechanosensitive channel [Cell e	96.34
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	96.33
PF14735	238	HAUS4: HAUS augmin-like complex subunit 4	96.29
PF09486	158	HrpB7: Bacterial type III secretion protein (HrpB7	96.27
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	96.26
KOG1655	218	consensus Protein involved in vacuolar protein sor	96.25
KOG4787	852	consensus Uncharacterized conserved protein [Funct	96.23
PRK09343	121	prefoldin subunit beta; Provisional	96.23
cd07621	219	BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of	96.2
COG4717	984	Uncharacterized conserved protein [Function unknow	96.2
PF13805	271	Pil1: Eisosome component PIL1; PDB: 3PLT_B.	96.19
PRK03947	140	prefoldin subunit alpha; Reviewed	96.19
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	96.19
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	96.17
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	96.17
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	96.14
KOG4302	660	consensus Microtubule-associated protein essential	96.14
PF09486	158	HrpB7: Bacterial type III secretion protein (HrpB7	96.13
KOG4572	1424	consensus Predicted DNA-binding transcription fact	96.13
PF05769	181	DUF837: Protein of unknown function (DUF837); Inte	96.12
cd07663	218	BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S	96.12
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	96.12
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	96.12
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	96.12
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	96.11
PF10191	766	COG7: Golgi complex component 7 (COG7); InterPro:	96.1
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	96.09
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	96.08
cd07623	224	BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of	96.07
KOG1962	216	consensus B-cell receptor-associated protein and r	96.06
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	96.05
KOG2008	426	consensus BTK-associated SH3-domain binding protei	96.04
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	96.04
cd07662	218	BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S	96.0
COG5293	591	Predicted ATPase [General function prediction only	96.0
PF13949	296	ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HI	95.99
PF12004	495	DUF3498: Domain of unknown function (DUF3498); Int	95.99
PRK03598	331	putative efflux pump membrane fusion protein; Prov	95.97
PF01540	353	Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR0	95.96
PRK03598	331	putative efflux pump membrane fusion protein; Prov	95.95
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	95.95
PF00015	213	MCPsignal: Methyl-accepting chemotaxis protein (MC	95.95
KOG0972	384	consensus Huntingtin interacting protein 1 (Hip1)	95.94
PF04100	383	Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007	95.92
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	95.91
KOG2072	988	consensus Translation initiation factor 3, subunit	95.91
cd07667	240	BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of	95.89
cd07643	231	I-BAR_IMD_MIM Inverse (I)-BAR, also known as the I	95.89
KOG2273	503	consensus Membrane coat complex Retromer, subunit	95.89
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	95.87
PF03915	424	AIP3: Actin interacting protein 3; InterPro: IPR02	95.86
KOG0577	948	consensus Serine/threonine protein kinase [Signal	95.86
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	95.83
COG3599	212	DivIVA Cell division initiation protein [Cell divi	95.81
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	95.8
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	95.8
PF15233	134	SYCE1: Synaptonemal complex central element protei	95.79
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	95.78
PRK12705	508	hypothetical protein; Provisional	95.78
PRK06975	656	bifunctional uroporphyrinogen-III synthetase/uropo	95.77
cd07675	252	F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/	95.76
KOG3647	338	consensus Predicted coiled-coil protein [General f	95.75
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	95.75
COG4487	438	Uncharacterized protein conserved in bacteria [Fun	95.74
PF05816	333	TelA: Toxic anion resistance protein (TelA); Inter	95.72
PRK15374	593	pathogenicity island 1 effector protein SipB; Prov	95.72
COG1322	448	Predicted nuclease of restriction endonuclease-lik	95.71
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	95.71
PF02994	370	Transposase_22: L1 transposable element; InterPro:	95.71
KOG4637	464	consensus Adaptor for phosphoinositide 3-kinase [S	95.7
PF15358	558	TSKS: Testis-specific serine kinase substrate	95.69
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	95.69
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	95.69
KOG1962	216	consensus B-cell receptor-associated protein and r	95.68
PF13094	160	CENP-Q: CENP-Q, a CENPA-CAD centromere complex sub	95.67
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	95.66
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	95.65
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	95.63
PF08580	683	KAR9: Yeast cortical protein KAR9; InterPro: IPR01	95.59
PF02994	370	Transposase_22: L1 transposable element; InterPro:	95.59
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	95.58
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	95.56
cd07595	244	BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR)	95.55
TIGR02231	525	conserved hypothetical protein. This family consis	95.55
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	95.55
PF14817	632	HAUS5: HAUS augmin-like complex subunit 5	95.54
PRK12705	508	hypothetical protein; Provisional	95.52
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	95.51
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	95.5
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	95.5
KOG4657	246	consensus Uncharacterized conserved protein [Funct	95.49
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	95.48
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	95.48
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	95.48
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	95.48
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	95.47
cd07676	253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	95.47
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	95.47
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	95.47
smart00806	426	AIP3 Actin interacting protein 3. Aip3p/Bud6p is a	95.45

>PRK11637 AmiB activator; Provisional

Probab=99.07  E-value=8.3e-08  Score=102.95  Aligned_cols=75  Identities=12%  Similarity=0.180  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELK  123 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a---e~E~eL~eL~eki~kLEaEL~  123 (504)
                      ..++++|..++.+|+.++.++..+..++..+..+|..+..+|..+...|..+..   +.+.+|..++++|.++++++.
T Consensus        43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~  120 (428)
T PRK11637         43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA  120 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777777777766666666666666666666666655555555544221   234444444444444444443

>PRK11637 AmiB activator; Provisional

Probab=99.02  E-value=1.2e-07  Score=101.72  Aligned_cols=78  Identities=15%  Similarity=0.218  Sum_probs=52.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHHHHHHH
Q 010679           46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAEL  122 (504)
Q Consensus        46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a---e~E~eL~eL~eki~kLEaEL  122 (504)
                      =....++++|..+..+|..+..++..+..++..+..+|..++.+|..++.+|..+..   .++.+|..+++++.+.+..+
T Consensus        47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777777777777777777777777777666666666666666655443   35667777777777766666


Q ss_pred             H
Q 010679          123 K  123 (504)
Q Consensus       123 ~  123 (504)
                      .
T Consensus       127 ~  127 (428)
T PRK11637        127 A  127 (428)
T ss_pred             H
Confidence            5

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=99.01  E-value=1.3e-07  Score=106.56  Aligned_cols=183  Identities=16%  Similarity=0.268  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhccchH----------HHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATH-------GTLRQELAAAQHELQILHGQIGGMKS----------ERELQMRNL  111 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi-------~~LkqELa~lqqEL~~L~~~L~~l~a----------e~E~eL~eL  111 (504)
                      ..||.+|..++.||+.....-++|..++       ..++.+|..++.+.+.|+..+..+..          .+|.+|.+.
T Consensus       421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE  500 (697)
T PF09726_consen  421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE  500 (697)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888888888876655555555442       34555666666666666665554332          234445555


Q ss_pred             HHHHHHHHHHHHHHh--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          112 TEKIAKMEAELKTAE--------------------------PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (504)
Q Consensus       112 ~eki~kLEaEL~ele--------------------------~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~  165 (504)
                      +.....+|++|.+..                          .++....+|+.|+.+|+.++...+.++..|+.+++.++.
T Consensus       501 ~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~  580 (697)
T PF09726_consen  501 RRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555554221                          123334445555555555555555555555555544433


Q ss_pred             h----hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          166 D----VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES-------LQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       166 e----lqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq-------lqemek~L~sme~EiekLraELekle~  231 (504)
                      .    ...++.|...|.+++.+-.+|+..|..+.+-+.+|-..       ++.++..+.+.++||..|+++|+.+..
T Consensus       581 ~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a  657 (697)
T PF09726_consen  581 YEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA  657 (697)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2    22355666677777788888887777776665555544       444455555678888888888887654

; GO: 0016021 integral to membrane

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=98.99  E-value=1.3e-07  Score=97.50  Aligned_cols=50  Identities=12%  Similarity=0.145  Sum_probs=27.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       182 qELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      ++++.....+......+..-.+++++-+.+++.++.+...|+.|++.+++
T Consensus       231 q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~  280 (499)
T COG4372         231 QAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA  280 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444555666666666666666666666666654

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.92  E-value=3.5e-07  Score=108.18  Aligned_cols=47  Identities=19%  Similarity=0.241  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      ++.++..+..++..+..++.++..++..++.++..+..++..+...+
T Consensus       292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~  338 (1164)
T TIGR02169       292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI  338 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555444444444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.91  E-value=3.8e-07  Score=107.95  Aligned_cols=12  Identities=33%  Similarity=0.523  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHHH
Q 010679          214 TMATEVEKLRAE  225 (504)
Q Consensus       214 sme~EiekLraE  225 (504)
                      .+..++.+++.+
T Consensus       480 ~l~~~l~~l~~~  491 (1164)
T TIGR02169       480 RVEKELSKLQRE  491 (1164)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.89  E-value=1.2e-06  Score=89.70  Aligned_cols=117  Identities=21%  Similarity=0.350  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhccch---HHHHHHHHHHHHHHH
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQEL--------AAAQHELQILHGQIGGMK---SERELQMRNLTEKIA  116 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqEL--------a~lqqEL~~L~~~L~~l~---ae~E~eL~eL~eki~  116 (504)
                      ...|+.+|....++++.|+.+|..|..+|..++...        .....+|..++..|..+.   +.++.++..+...+.
T Consensus         6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~   85 (312)
T PF00038_consen    6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELE   85 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHH
Confidence            357899999999999999999999999998887762        234556666666655432   234445555555555


Q ss_pred             HHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          117 KMEAEL----KTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (504)
Q Consensus       117 kLEaEL----~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~  164 (504)
                      .++..+    .....++.++..++.++.+....+.+|+.+++.|+.+|..++
T Consensus        86 ~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~  137 (312)
T PF00038_consen   86 DLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK  137 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence            444433    344567777788888888888888888888888877776443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.89  E-value=6.3e-07  Score=97.50  Aligned_cols=52  Identities=19%  Similarity=0.334  Sum_probs=35.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      -..++.+|+.+..+...|...+..|+.+...|+.++..++.+|...+.+...
T Consensus       138 a~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~  189 (546)
T PF07888_consen  138 AQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQ  189 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777777777777777777777777777766666666665544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.89  E-value=5.5e-07  Score=106.28  Aligned_cols=31  Identities=16%  Similarity=0.292  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTL   79 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~L   79 (504)
                      ..++.++..+..+++.+..++..+..++..+
T Consensus       701 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  731 (1179)
T TIGR02168       701 AELRKELEELEEELEQLRKELEELSRQISAL  731 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=98.89  E-value=2.9e-06  Score=89.79  Aligned_cols=72  Identities=14%  Similarity=0.257  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAE  121 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a---e~E~eL~eL~eki~kLEaE  121 (504)
                      ..+++|.....+|..++..+.....+...|+.+|..++.++..+..+|.+...   ++++.|..+...+.+++.+
T Consensus        35 a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q  109 (420)
T COG4942          35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ  109 (420)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence            33345555555555555555544444445555555555554444444433221   2344455555555444443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.88  E-value=4.8e-07  Score=98.39  Aligned_cols=76  Identities=16%  Similarity=0.288  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhccc---hHHHHHHHHHHHHHHH
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELA--------AAQHELQILHGQIGGM---KSERELQMRNLTEKIA  116 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa--------~lqqEL~~L~~~L~~l---~ae~E~eL~eL~eki~  116 (504)
                      +..|+.+|....+++.+|+.+|.+|..++..|+.-..        -...||..+...|++.   .+.++.+|..|.+++.
T Consensus        44 l~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~  123 (546)
T KOG0977|consen   44 LQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELK  123 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3667888888889999999999999999988876432        1233444444444332   2234555555555555


Q ss_pred             HHHHHHH
Q 010679          117 KMEAELK  123 (504)
Q Consensus       117 kLEaEL~  123 (504)
                      +++..+.
T Consensus       124 elr~~~~  130 (546)
T KOG0977|consen  124 ELRKKLE  130 (546)
T ss_pred             HHHHHHH
Confidence            5544443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.85  E-value=1.2e-06  Score=95.28  Aligned_cols=51  Identities=22%  Similarity=0.226  Sum_probs=27.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      -..+.++++.+.+..+...|+.++..|..++..|+.+|...+++...|...
T Consensus       143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~  193 (546)
T PF07888_consen  143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ  193 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555544444444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.82  E-value=1.3e-06  Score=103.26  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL   90 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL   90 (504)
                      ..++.++..+..++..+..++..+..++..++.++..++.++
T Consensus       673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~  714 (1179)
T TIGR02168       673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL  714 (1179)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555554444444444444333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=98.81  E-value=3e-06  Score=89.67  Aligned_cols=51  Identities=14%  Similarity=0.236  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~   98 (504)
                      ...++.+|+.+..+|.....+.++|+.++..++.++..+..+|.+....+.
T Consensus        40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~   90 (420)
T COG4942          40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLK   90 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            345555555555555555555555555555555555544444444444433

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.77  E-value=2.3e-06  Score=94.29  Aligned_cols=15  Identities=20%  Similarity=0.350  Sum_probs=7.6

Q ss_pred             CCCCCCCCCCCCCCCC
Q 010679           27 FVSGMRPPMPGAFPPF   42 (504)
Q Consensus        27 ~~~~~~~~~~~~~~~~   42 (504)
                      |-..+.+| .|.|-+|
T Consensus       130 f~~~v~l~-q~~f~~f  144 (562)
T PHA02562        130 FKQIVVLG-TAGYVPF  144 (562)
T ss_pred             HhHHheec-cCchhhH
Confidence            43333334 6666665

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.75  E-value=2.1e-06  Score=94.58  Aligned_cols=41  Identities=15%  Similarity=0.187  Sum_probs=16.1

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          185 HHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE  225 (504)
Q Consensus       185 q~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraE  225 (504)
                      ..++.+++.++....++.+++.+++.++..+..++.++..+
T Consensus       361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke  401 (562)
T PHA02562        361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE  401 (562)
T ss_pred             HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333334444444444444443333333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.75  E-value=2.5e-06  Score=97.97  Aligned_cols=103  Identities=16%  Similarity=0.217  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010679          129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV-Q----QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE  203 (504)
Q Consensus       129 kaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~el-q----ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~e  203 (504)
                      +.+..+++.++....+.+.+++..+..|+..|..++.+. +    ++.+...+++.|+.|++.++..+..++.+..++.+
T Consensus       350 ~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~  429 (1074)
T KOG0250|consen  350 RREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKE  429 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444555554444443332 1    12333344555555555555555555555555555


Q ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHhccc
Q 010679          204 SLQVMEKNYIT-------MATEVEKLRAELMNAPN  231 (504)
Q Consensus       204 qlqemek~L~s-------me~EiekLraELekle~  231 (504)
                      .+.+.++++..       +.+.|+....+|..|++
T Consensus       430 ~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~  464 (1074)
T KOG0250|consen  430 KAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK  464 (1074)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555555544       44444444444544443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.74  E-value=1.6e-06  Score=99.58  Aligned_cols=58  Identities=14%  Similarity=0.203  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010679          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV  232 (504)
Q Consensus       175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~  232 (504)
                      .++..++.+|.++..++....+.+..+.+..+.+..++..+.++++.++..+...+.+
T Consensus       542 ~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~  599 (1293)
T KOG0996|consen  542 TELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR  599 (1293)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3344444455555445444445555555555555555555555555555555544443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.72  E-value=2.3e-06  Score=96.67  Aligned_cols=177  Identities=20%  Similarity=0.265  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch---HHHHHHHHHHHHHHHHHHHHHH---
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK---SERELQMRNLTEKIAKMEAELK---  123 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~---ae~E~eL~eL~eki~kLEaEL~---  123 (504)
                      .+.++|+.+..++|+++.+...+..++..|++++..++.+...+++.+.-..   ..+...+..+.+....+++++.   
T Consensus       696 ~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel  775 (1200)
T KOG0964|consen  696 DIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSEL  775 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Confidence            3445555566666666666666666667777777777777666666654321   2233344444444444555443   


Q ss_pred             ----------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhHHHHHHHH-----HHHHHHHH
Q 010679          124 ----------TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ-RAHTDVQQIPALLSELES-----LRQEYHHC  187 (504)
Q Consensus       124 ----------ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq-~l~~elqql~~L~~EIea-----LrqELq~L  187 (504)
                                .+..|..+|..+..++..+..++.++...+..|+..|. +|.....   .+.++|..     ++.++..+
T Consensus       776 ~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~---~l~~ei~~~~d~~~~~el~~~  852 (1200)
T KOG0964|consen  776 FSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVN---ELEQEIGDLNDSSRRSELELE  852 (1200)
T ss_pred             HhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHhhhcccccchhhhhHH
Confidence                      33456677777777777777777777777777777664 2222222   12222211     22334444


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          188 RGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       188 R~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl  229 (504)
                      ..+++.+.+.++....++..++..++....++..++.+++++
T Consensus       853 ~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~  894 (1200)
T KOG0964|consen  853 KSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKA  894 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444444443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.71  E-value=2.9e-06  Score=92.40  Aligned_cols=104  Identities=24%  Similarity=0.333  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---chHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHH
Q 010679           61 EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG---MKSERELQMRNLTEKIAKMEAELKTAE----PVKLEFQ  133 (504)
Q Consensus        61 EIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~---l~ae~E~eL~eL~eki~kLEaEL~ele----~LkaELe  133 (504)
                      +...++.++.+|..++..++..+..+.+.+....+.+..   ..++++.++..++.++..|+.++..+.    .|..+|.
T Consensus       107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~  186 (546)
T KOG0977|consen  107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA  186 (546)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            334444444555555555555555444444444444432   234567777778888888888776543    6777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (504)
Q Consensus       134 qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~  164 (504)
                      .++.++.+....+.+++.+++.|.++|..+.
T Consensus       187 ~~r~~ld~Etllr~d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  187 RARKQLDDETLLRVDLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            8888888888888889999999999987554

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.70  E-value=3e-06  Score=84.23  Aligned_cols=49  Identities=10%  Similarity=0.245  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      ..++.+|+....++..+...+.........+..++..++++|..+...+
T Consensus         4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~l   52 (237)
T PF00261_consen    4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEEL   52 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555554444444444444444444444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.68  E-value=2.9e-06  Score=97.51  Aligned_cols=36  Identities=14%  Similarity=0.191  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           61 EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        61 EIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      ++..+..+.+.++.+...+++.|..+.+.+..+.++
T Consensus       385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke  420 (1293)
T KOG0996|consen  385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKE  420 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444444433333333333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.68  E-value=4.2e-06  Score=100.15  Aligned_cols=16  Identities=25%  Similarity=0.314  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHHh
Q 010679          213 ITMATEVEKLRAELMN  228 (504)
Q Consensus       213 ~sme~EiekLraELek  228 (504)
                      ..+..+++.++..+..
T Consensus       477 ~~~~~~l~~~~~~~~~  492 (1163)
T COG1196         477 QRLEKELSSLEARLDR  492 (1163)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=98.67  E-value=1.9e-05  Score=81.78  Aligned_cols=190  Identities=16%  Similarity=0.227  Sum_probs=92.4

Q ss_pred             CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------chH---HHH
Q 010679           36 PGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG-------MKS---ERE  105 (504)
Q Consensus        36 ~~~~~~~~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~-------l~a---e~E  105 (504)
                      -|.|--=|+.|++..+..+|.....+....+.+.+....++...++|-+..++++..++..+.+       +.+   +++
T Consensus        71 ~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lq  150 (499)
T COG4372          71 SGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQ  150 (499)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566333666777777666666666665555544444444444433333333333333333222       111   233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHhhhhhh
Q 010679          106 LQMRNLTEKIAKMEAELKTAEP----VKLEFQKSKTEAQNLVVAR-------EELIA---KVHQLTQDLQRAHTDVQQIP  171 (504)
Q Consensus       106 ~eL~eL~eki~kLEaEL~ele~----LkaELeqLr~ELqeL~aer-------qeL~a---qvq~L~~ELq~l~~elqql~  171 (504)
                      .++..|.++..++++++..+..    |.....+|+.+..+|...-       ++|..   .++.++.+|.+....   ..
T Consensus       151 trl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa---~Q  227 (499)
T COG4372         151 TRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAA---AQ  227 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence            4444455554555544433221    1111122222222222222       12211   122222222222211   22


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      ...++|..+-..++.+..++..-...+.+-+++++.+|.++..+++|+++|++-...
T Consensus       228 q~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~  284 (499)
T COG4372         228 QTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQA  284 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456666666666666666666667777788888888888888888888765443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.66  E-value=3.4e-06  Score=95.68  Aligned_cols=43  Identities=12%  Similarity=0.030  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 010679          195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAA  237 (504)
Q Consensus       195 kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~~~  237 (504)
                      ..++...+..++.++..+..+..+-..++.+++++.+.+.|-.
T Consensus       898 ~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~  940 (1174)
T KOG0933|consen  898 LSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG  940 (1174)
T ss_pred             HHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence            3334444445677777788888888888888999988898854

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.66  E-value=6e-06  Score=98.89  Aligned_cols=53  Identities=26%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       176 EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      +++.++.++..+...+...+....++.+++.+++..+..+..++++++..+..
T Consensus       864 ~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  916 (1163)
T COG1196         864 ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE  916 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444455555555555555555555554444443

>PRK02224 chromosome segregation protein; Provisional

Probab=98.65  E-value=4.9e-06  Score=96.68  Aligned_cols=13  Identities=23%  Similarity=0.281  Sum_probs=5.3

Q ss_pred             CCCCCCCCCCCCCC
Q 010679           26 PFVSGMRPPMPGAF   39 (504)
Q Consensus        26 ~~~~~~~~~~~~~~   39 (504)
                      .|-..+--| +|=|
T Consensus       128 ~f~~~~~i~-Qge~  140 (880)
T PRK02224        128 AFVNCAYVR-QGEV  140 (880)
T ss_pred             HhcceeEee-ccCh
Confidence            444433333 5544

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.63  E-value=7.3e-06  Score=100.04  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          200 DHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       200 el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      .....+..++++...+..+++.|+.+|+.
T Consensus      1115 ~er~~r~K~ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1115 AERASRAKAERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444443

>PRK03918 chromosome segregation protein; Provisional

Probab=98.63  E-value=1e-05  Score=93.85  Aligned_cols=37  Identities=30%  Similarity=0.465  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010679          107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLV  143 (504)
Q Consensus       107 eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~  143 (504)
                      ++..+.+.+..++.++..++....+++.++.++..+.
T Consensus       215 e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~  251 (880)
T PRK03918        215 ELPELREELEKLEKEVKELEELKEEIEELEKELESLE  251 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444333333333333333333333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.63  E-value=1.7e-05  Score=78.91  Aligned_cols=179  Identities=13%  Similarity=0.238  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH-----------------HHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS-----------------ERELQMRNL  111 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a-----------------e~E~eL~eL  111 (504)
                      ...++++..+..++.........+..++..|...|..+..+|.+....+.....                 .++......
T Consensus        11 d~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~   90 (237)
T PF00261_consen   11 DEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSD   90 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            345556666666666666666666666666666666655555555544433211                 112222233


Q ss_pred             HHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------
Q 010679          112 TEKIAKMEAELKTAE-----------PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI----------  170 (504)
Q Consensus       112 ~eki~kLEaEL~ele-----------~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql----------  170 (504)
                      .++|..|+.+++.+.           .+...|..+..+|..+......+..++..|+.+|..+...++.+          
T Consensus        91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~r  170 (237)
T PF00261_consen   91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASER  170 (237)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence            334444444443222           11122333444444444444444444444444444333333222          


Q ss_pred             -hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          171 -PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       171 -~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe  227 (504)
                       ..+...|..|...|..+....+.....+..|..++..++..|.....+...++.+|+
T Consensus       171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld  228 (237)
T PF00261_consen  171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD  228 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             122233444444444444444444444444545555555555555555555555543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.62  E-value=1e-05  Score=92.98  Aligned_cols=38  Identities=8%  Similarity=0.289  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (504)
Q Consensus       128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~  165 (504)
                      ...|++.+++.+..+..+..+++.++......+++++.
T Consensus       335 ~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~  372 (1074)
T KOG0250|consen  335 QDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKK  372 (1074)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=98.62  E-value=2.9e-05  Score=74.06  Aligned_cols=33  Identities=15%  Similarity=0.225  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       197 ~~~el~eqlqemek~L~sme~EiekLraELekl  229 (504)
                      .+.+...++.++..-++....-.+.|+.++.+|
T Consensus       152 ~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~L  184 (193)
T PF14662_consen  152 ILSERTQQIEELKKTIEEYRSITEELRLEKSRL  184 (193)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444443

>TIGR00606 rad50 rad50

Probab=98.62  E-value=5.9e-06  Score=100.04  Aligned_cols=56  Identities=23%  Similarity=0.332  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          106 LQMRNLTEKIAKMEAELK------TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (504)
Q Consensus       106 ~eL~eL~eki~kLEaEL~------ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq  161 (504)
                      .++..+..+|..++.++.      .++.+..++..++.++..+..++..+..+.+.++.+|.
T Consensus       799 ~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~  860 (1311)
T TIGR00606       799 MELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQ  860 (1311)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444433      12234444444444444443333333333333333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.62  E-value=1.5e-05  Score=89.49  Aligned_cols=37  Identities=19%  Similarity=0.307  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (504)
Q Consensus       128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~  164 (504)
                      +..|++.++.|+.+|...+..|..+++.++..|..++
T Consensus       401 ~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk  437 (1243)
T KOG0971|consen  401 LQKELEKKNSELEELRRQKERLSRELDQAESTIADLK  437 (1243)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555555555555555554433

>PRK02224 chromosome segregation protein; Provisional

Probab=98.61  E-value=1.2e-05  Score=93.35  Aligned_cols=34  Identities=15%  Similarity=0.152  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       195 kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      +..+..+.+++.+++.++..++.++..++.+++.
T Consensus       362 ~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~e  395 (880)
T PRK02224        362 REEAAELESELEEAREAVEDRREEIEELEEEIEE  395 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444444444444444443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.61  E-value=1.1e-05  Score=98.46  Aligned_cols=47  Identities=11%  Similarity=0.127  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEV  219 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Ei  219 (504)
                      +...|..|...+.+|..+++.++.....++.+..++...++.+..++
T Consensus      1095 l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1095 LQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555544444444443333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.61  E-value=1.3e-05  Score=90.07  Aligned_cols=19  Identities=5%  Similarity=0.239  Sum_probs=14.3

Q ss_pred             CCCCChHHHHHHHHHHHHH
Q 010679           43 DMMPPPEVMEQKIASQHVE   61 (504)
Q Consensus        43 ~~~p~~~~LEqeLe~~~eE   61 (504)
                      ++-++...|.++|+.++.+
T Consensus       228 eLr~QvrdLtEkLetlR~k  246 (1243)
T KOG0971|consen  228 ELRAQVRDLTEKLETLRLK  246 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            3447789999999987654

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.60  E-value=1.4e-05  Score=90.89  Aligned_cols=54  Identities=22%  Similarity=0.334  Sum_probs=38.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           46 PPPEVMEQKIASQHVEMQKLATENQRLAA---THGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~---qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      .....++.+|...+.++..++.+++.|+.   ....|+++|+....++..+...+++
T Consensus       677 ~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~  733 (1174)
T KOG0933|consen  677 QKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQ  733 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34456777888888888888877766654   4556778888777777777776654

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.57  E-value=2.3e-05  Score=86.37  Aligned_cols=40  Identities=23%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD  166 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~e  166 (504)
                      .|+.||+..+.++..++.........+..|..+|.+++.+
T Consensus       313 sL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~e  352 (522)
T PF05701_consen  313 SLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSE  352 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Confidence            4455555555555555554444444555555555444443

Several sequences in this family are described as being myosin heavy chain-like.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=98.57  E-value=1.7e-05  Score=78.74  Aligned_cols=18  Identities=28%  Similarity=0.582  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010679          105 ELQMRNLTEKIAKMEAEL  122 (504)
Q Consensus       105 E~eL~eL~eki~kLEaEL  122 (504)
                      +.+|+.+.+++.+.+..+
T Consensus        65 e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          65 ESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=98.57  E-value=2.6e-05  Score=77.37  Aligned_cols=59  Identities=27%  Similarity=0.511  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT  124 (504)
Q Consensus        62 Iq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~e  124 (504)
                      |+.|..++.+|+..+......|..++.++.+++..+..    ++.++..|..++..++.++.+
T Consensus        12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~----~~~e~e~le~qv~~~e~ei~~   70 (239)
T COG1579          12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEA----LEIELEDLENQVSQLESEIQE   70 (239)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555444    333444444444444444443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=1.3e-05  Score=88.82  Aligned_cols=28  Identities=14%  Similarity=0.114  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLES  204 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eq  204 (504)
                      +++|..|.+...++++..+..+.++++.
T Consensus       551 ldelskE~esk~~eidi~n~qlkelk~~  578 (1118)
T KOG1029|consen  551 LDELSKETESKLNEIDIFNNQLKELKED  578 (1118)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4444444444444444444444444443

>PRK03918 chromosome segregation protein; Provisional

Probab=98.57  E-value=2.2e-05  Score=91.19  Aligned_cols=47  Identities=15%  Similarity=0.227  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          106 LQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAK  152 (504)
Q Consensus       106 ~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aq  152 (504)
                      .++..+...+..++.....++.++.++..+..++..+...+.++..+
T Consensus       221 ~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~e  267 (880)
T PRK03918        221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEER  267 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444443333333333333333333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=1.2e-05  Score=89.01  Aligned_cols=21  Identities=14%  Similarity=0.368  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010679          103 ERELQMRNLTEKIAKMEAELK  123 (504)
Q Consensus       103 e~E~eL~eL~eki~kLEaEL~  123 (504)
                      .++.++..|..++.+|...|.
T Consensus       441 ql~~eletLn~k~qqls~kl~  461 (1118)
T KOG1029|consen  441 QLQQELETLNFKLQQLSGKLQ  461 (1118)
T ss_pred             HHHHHHHHHHHHHHHHhhhhh
Confidence            345566666666666666554

>PRK09039 hypothetical protein; Validated

Probab=98.53  E-value=1.2e-05  Score=84.21  Aligned_cols=57  Identities=12%  Similarity=0.239  Sum_probs=34.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 010679          170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM----ATEVEKLRAEL  226 (504)
Q Consensus       170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sm----e~EiekLraEL  226 (504)
                      +..|+++|++|+.+|..++.+|+..++...+.+.++.+++..|+.+    ..++++++.++
T Consensus       139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~  199 (343)
T PRK09039        139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF  199 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            4455556666666666666666666666666666666665555543    34566666666

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=98.48  E-value=0.0001  Score=70.44  Aligned_cols=33  Identities=9%  Similarity=0.113  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       196 k~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      ..+.++..-+.+...-...++.|+.+|+..|..
T Consensus       158 ~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q  190 (193)
T PF14662_consen  158 QQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ  190 (193)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444444445556666666665543

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.48  E-value=0.00014  Score=73.11  Aligned_cols=52  Identities=13%  Similarity=0.210  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      +..-+.+|..++.+...++.+++.|..++.++..++..++.++..++.+|..
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~   84 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKK   84 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555555555555555555554444443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.48  E-value=0.00015  Score=74.43  Aligned_cols=42  Identities=21%  Similarity=0.394  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL   90 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL   90 (504)
                      ..++.+|..++..|..+..++.+|..++..++.++..++.++
T Consensus        50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~   91 (312)
T PF00038_consen   50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKY   91 (312)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHH
Confidence            456777777777777776666666666666666555544433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=2.4e-05  Score=84.83  Aligned_cols=120  Identities=12%  Similarity=0.132  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010679          107 QMRNLTEKIAKMEAELKTAE----PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQ  182 (504)
Q Consensus       107 eL~eL~eki~kLEaEL~ele----~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrq  182 (504)
                      ..+.|+..+.++++-+..++    .+...|+.++.+++....+++.|+.+++.|...|....--..+++.+..|.++|.+
T Consensus       267 ~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r  346 (581)
T KOG0995|consen  267 KKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKR  346 (581)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            33444444444444333322    34445555666666666666666666666666655432223445666677777777


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (504)
Q Consensus       183 ELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraEL  226 (504)
                      ++.++..+++.+.+..-++..++++.-++++++-.++.++..+|
T Consensus       347 ~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i  390 (581)
T KOG0995|consen  347 ELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRI  390 (581)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777766666666555555555555555554444

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.47  E-value=4.9e-05  Score=92.32  Aligned_cols=43  Identities=12%  Similarity=-0.024  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        57 ~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      ..+.++.....++.+.+..+..+...+..+..++..|+.++++
T Consensus       290 g~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEk  332 (1486)
T PRK04863        290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQA  332 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444445455554444433

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=98.47  E-value=0.00012  Score=72.37  Aligned_cols=22  Identities=18%  Similarity=0.364  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010679          102 SERELQMRNLTEKIAKMEAELK  123 (504)
Q Consensus       102 ae~E~eL~eL~eki~kLEaEL~  123 (504)
                      +.++++++++...|..|++.+.
T Consensus       139 A~kEQEmqe~~sqi~~lK~qq~  160 (330)
T KOG2991|consen  139 ATKEQEMQECTSQIQYLKQQQQ  160 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhC
Confidence            3478888888888888887654

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.46  E-value=3.7e-05  Score=93.32  Aligned_cols=36  Identities=6%  Similarity=0.084  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE   89 (504)
Q Consensus        54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqE   89 (504)
                      ++.....+|...+..+.++...+.++..+|..++.+
T Consensus       294 rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQ  329 (1486)
T PRK04863        294 ELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQD  329 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.45  E-value=7.7e-05  Score=82.31  Aligned_cols=20  Identities=20%  Similarity=0.338  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010679          206 QVMEKNYITMATEVEKLRAE  225 (504)
Q Consensus       206 qemek~L~sme~EiekLraE  225 (504)
                      .+|...|+.+..|.+.++.+
T Consensus       368 ~~l~~~Lqql~~Eae~Ak~e  387 (522)
T PF05701_consen  368 SELPKALQQLSSEAEEAKKE  387 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

Several sequences in this family are described as being myosin heavy chain-like.

>PRK09039 hypothetical protein; Validated

Probab=98.45  E-value=5e-05  Score=79.57  Aligned_cols=49  Identities=16%  Similarity=0.237  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~   98 (504)
                      -|.++|+...+++..|+.++..|.+.+.--+.....++.+|..++.++.
T Consensus        43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~   91 (343)
T PRK09039         43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS   91 (343)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3456666666666666666555555444444444445555555544443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.45  E-value=2.5e-05  Score=88.43  Aligned_cols=20  Identities=15%  Similarity=0.336  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 010679          149 LIAKVHQLTQDLQRAHTDVQ  168 (504)
Q Consensus       149 L~aqvq~L~~ELq~l~~elq  168 (504)
                      +..++++|+.|+.+|+.|++
T Consensus       543 ~r~r~~~lE~E~~~lr~elk  562 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELK  562 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555544443

; GO: 0016021 integral to membrane

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.44  E-value=0.00018  Score=73.02  Aligned_cols=82  Identities=18%  Similarity=0.283  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010679          132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ----QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV  207 (504)
Q Consensus       132 LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq----ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqe  207 (504)
                      +..+.+++..+.....++..+++.|..+++....++-    .+.+++.+++.+..++..+...++.+...+..+...+.+
T Consensus       160 ~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre  239 (294)
T COG1340         160 LKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRE  239 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444443333321    123344444444444444444444444444444444444


Q ss_pred             HHHHHH
Q 010679          208 MEKNYI  213 (504)
Q Consensus       208 mek~L~  213 (504)
                      +++.+.
T Consensus       240 ~~k~ik  245 (294)
T COG1340         240 LEKKIK  245 (294)
T ss_pred             HHHHHH
Confidence            444333

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=0.00013  Score=78.70  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHHhccccc
Q 010679          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESL----QVMEKNYITMATEV---EKLRAELMNAPNVD  233 (504)
Q Consensus       174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eql----qemek~L~sme~Ei---ekLraELekle~~~  233 (504)
                      +-|.+.|+.|+.++..+++.++..+++...-.    +.|++.|..+..|.   -.|++||+...+.+
T Consensus       193 QVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e  259 (772)
T KOG0999|consen  193 QVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAE  259 (772)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchh
Confidence            44567778888888888888877766554322    22555555555544   45778888776644

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.41  E-value=7.5e-05  Score=84.41  Aligned_cols=45  Identities=27%  Similarity=0.364  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG   95 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~   95 (504)
                      +..+++.+..++..+..+.+.+..++..++.+++.++.++..++.
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~  251 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK  251 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555544444444444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.39  E-value=0.00016  Score=73.55  Aligned_cols=48  Identities=17%  Similarity=0.284  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE  225 (504)
Q Consensus       178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraE  225 (504)
                      +.++.+.+.+-.++....+...++.+.+..+.+.|..+.+.|..|+..
T Consensus       203 De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~  250 (294)
T COG1340         203 DELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAK  250 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333344444444444444444444444444433

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=98.38  E-value=0.00012  Score=79.32  Aligned_cols=33  Identities=9%  Similarity=0.070  Sum_probs=24.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGT   78 (504)
Q Consensus        46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~   78 (504)
                      ..+..++.++..++.++..+..+..+|.+.+..
T Consensus        90 ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~  122 (457)
T TIGR01000        90 YDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQS  122 (457)
T ss_pred             ECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355677788888888888888888887776654

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=98.37  E-value=2.7e-05  Score=80.87  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHH
Q 010679          108 MRNLTEKIAKMEAELKTAEPVKL  130 (504)
Q Consensus       108 L~eL~eki~kLEaEL~ele~Lka  130 (504)
                      +..|.++...|+.++..++.+..
T Consensus       179 ~~~l~~~~~~L~~e~~~Lk~~~~  201 (325)
T PF08317_consen  179 LPKLRERKAELEEELENLKQLVE  201 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344444444444444443333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.36  E-value=0.00012  Score=81.50  Aligned_cols=37  Identities=19%  Similarity=0.216  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL   90 (504)
Q Consensus        54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL   90 (504)
                      +|.+++.+++.++.+.+.|++.+..++.+|...+-+|
T Consensus       107 QiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etel  143 (1265)
T KOG0976|consen  107 QIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEI  143 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444433333333333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.34  E-value=3.2e-05  Score=87.96  Aligned_cols=159  Identities=16%  Similarity=0.209  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH----H
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK----T  124 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~----e  124 (504)
                      ..|+.+|+.++.+|..|+.++..-...+..|+++|+.++.|+..++.++.++..+.. ..+.-.++++.+-....    .
T Consensus       173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~-ra~~yrdeldalre~aer~d~~  251 (1195)
T KOG4643|consen  173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAH-RADRYRDELDALREQAERPDTT  251 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHhhhcCCCc
Confidence            457778888888888888888777777788888888888888888777766544311 11111111111111111    1


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679          125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES  204 (504)
Q Consensus       125 le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq  204 (504)
                      ......+++-++..+++++..-..|..+.+.|+.+|++++.+... ..+..+|-.+++.+..++.+.+..+.+.++|.++
T Consensus       252 ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~eE  330 (1195)
T KOG4643|consen  252 YKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEE  330 (1195)
T ss_pred             cchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            123334455566666677777677777777888888777765433 3445555555666666655555555555555555


Q ss_pred             HHHHH
Q 010679          205 LQVME  209 (504)
Q Consensus       205 lqeme  209 (504)
                      ...|+
T Consensus       331 nstLq  335 (1195)
T KOG4643|consen  331 NSTLQ  335 (1195)
T ss_pred             HHHHH
Confidence            44433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=98.34  E-value=0.00021  Score=73.11  Aligned_cols=170  Identities=21%  Similarity=0.296  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch------H-H------------------------HHHHHHHH
Q 010679           63 QKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK------S-E------------------------RELQMRNL  111 (504)
Q Consensus        63 q~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~------a-e------------------------~E~eL~eL  111 (504)
                      +.|..+|..|......+.++|....+++..|+.++..-.      . +                        ....+..|
T Consensus        86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~L  165 (306)
T PF04849_consen   86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEAL  165 (306)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHH
Confidence            566777777777778888888888777777777764200      0 0                        01235667


Q ss_pred             HHHHHHHHHHHHHHh----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHH
Q 010679          112 TEKIAKMEAELKTAE----PVKLEFQKSKTE----AQNLVVAREELIAKVHQLTQDLQRAHTDV----QQIPALLSELES  179 (504)
Q Consensus       112 ~eki~kLEaEL~ele----~LkaELeqLr~E----LqeL~aerqeL~aqvq~L~~ELq~l~~el----qql~~L~~EIea  179 (504)
                      +.++..|+.|...+.    .|+.+...+..+    +.++..+..+...++..|..+|.+...+.    .+|..|..+|-.
T Consensus       166 q~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivd  245 (306)
T PF04849_consen  166 QEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVD  245 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777766644332    222222222221    22233344444555566666665433322    123333333333


Q ss_pred             HH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010679          180 LR-------QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV  232 (504)
Q Consensus       180 Lr-------qELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~  232 (504)
                      ++       .|-+++...|...+.....|..++++++.+...+..-+...+.||.+++++
T Consensus       246 lQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~  305 (306)
T PF04849_consen  246 LQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR  305 (306)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            33       333334444444444444555566666666666666666777777777654

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=98.33  E-value=8e-05  Score=83.02  Aligned_cols=50  Identities=18%  Similarity=0.258  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      ..+.+......+++.|..+++.|..+++.+..++..++.++..+..++..
T Consensus       318 ~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~  367 (594)
T PF05667_consen  318 TEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEE  367 (594)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555566666666666666666666666666666555555554443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.32  E-value=0.0002  Score=77.87  Aligned_cols=48  Identities=15%  Similarity=0.193  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQ---ELAAAQHELQILHGQI   97 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lkq---ELa~lqqEL~~L~~~L   97 (504)
                      .+++..+.+..+|..|...+..|.+++.+.+.   .++.+++..++|+..+
T Consensus       225 ~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~  275 (581)
T KOG0995|consen  225 RLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDV  275 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHH
Confidence            45555666667777788777777777664432   2333444444444433

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=98.32  E-value=0.00026  Score=67.69  Aligned_cols=38  Identities=26%  Similarity=0.274  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE   89 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqE   89 (504)
                      +.++..++.+|+.|+.+..+.+..+..+.++|..+.+.
T Consensus         3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~   40 (205)
T KOG1003|consen    3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQA   40 (205)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34566666777766666666666666666665554443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.32  E-value=0.00019  Score=80.34  Aligned_cols=47  Identities=17%  Similarity=0.212  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~   98 (504)
                      ..+.....++++.+..++..|..+.......+..+...|..|+..+.
T Consensus        21 k~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~   67 (617)
T PF15070_consen   21 KEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA   67 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33333444444444444444444444444444444444444444443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.32  E-value=0.00017  Score=86.91  Aligned_cols=53  Identities=8%  Similarity=0.215  Sum_probs=34.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      ..+.|+++++.+...|+.+..+.+.++..+.....++..++.++..+...+..
T Consensus       601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~  653 (1201)
T PF12128_consen  601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQ  653 (1201)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44577777777777777777666666666666666666666666555555544

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.32  E-value=0.00011  Score=83.86  Aligned_cols=124  Identities=17%  Similarity=0.285  Sum_probs=61.2

Q ss_pred             CCCCCChHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH--HHHHHHHHH
Q 010679           42 FDMMPPPEVMEQKIA--------SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS--ERELQMRNL  111 (504)
Q Consensus        42 ~~~~p~~~~LEqeLe--------~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a--e~E~eL~eL  111 (504)
                      |-.|++.+.|++.+.        ..+.++..|..+.++|+..+..-...|..++++++.+...++.+..  .+...|+.|
T Consensus       155 Fa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l  234 (1072)
T KOG0979|consen  155 FARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELL  234 (1072)
T ss_pred             HHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777655443        4444555555555555555555555555555555555555444322  122223333


Q ss_pred             HHHH---------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          112 TEKI---------AKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (504)
Q Consensus       112 ~eki---------~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~  165 (504)
                      ..+.         .++.+.....+.++.++..+..++..+...+.+|+.++.++..++.....
T Consensus       235 ~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~  297 (1072)
T KOG0979|consen  235 EKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQR  297 (1072)
T ss_pred             HHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHH
Confidence            2211         11122222234555566666666555555555666555555555544333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=98.32  E-value=6.5e-05  Score=83.72  Aligned_cols=47  Identities=19%  Similarity=0.280  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      .-+++|+.+..+|+.|..++..+..++..++.++..+..++......
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~  371 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAE  371 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555544444444444333

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.31  E-value=0.00067  Score=68.19  Aligned_cols=74  Identities=16%  Similarity=0.371  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE  126 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele  126 (504)
                      +.+...|.....+|..+..+...++.+++.|..++..+..++..+++++.+    .+.+|..|+.+|..+++.|.+..
T Consensus        27 ~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~----~~~eik~l~~eI~~~~~~I~~r~  100 (265)
T COG3883          27 ALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQ----SKAEIKKLQKEIAELKENIVERQ  100 (265)
T ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566888888888888888888888888888888888888888888877    44556666666666666665443

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]

Probab=98.31  E-value=1e-05  Score=91.77  Aligned_cols=57  Identities=21%  Similarity=0.408  Sum_probs=25.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010679          312 RGPGYEASKGPGYDASKAPS-YDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGP  370 (504)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~y~~~~~~~y~~~~~p~y~~~~~~~y~~~~~~  370 (504)
                      -++.|+ -+.++|+..+.+. ...|+.|.|++ ++|.++-+++|+|+.+++|.++-+|+|
T Consensus       742 ~~~sYg-~~~~~~g~~~~~~~~~Gs~tp~~~s-~tpl~~~s~tp~~~~~~Tp~~dG~rTP  799 (1024)
T KOG1999|consen  742 ETSSYG-ERTPGYGRVTPARYGMGSSTPMYGS-NTPLWGGSRTPARDGGATPSHDGSRTP  799 (1024)
T ss_pred             Cccccc-cccccccccCccccCCCCcCccCCC-CCCCCCcccCccccCCCCcCCCCCcCC
Confidence            344454 4455566555444 24455555543 344444344444433333333333333

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=98.30  E-value=0.0001  Score=78.12  Aligned_cols=95  Identities=16%  Similarity=0.130  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010679          132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN  211 (504)
Q Consensus       132 LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~  211 (504)
                      +++++.+++....+++.|+++++.|..+|.+..--..+.+.+.+|.+.|-.||+.+.-+.+.+.+.+.+-+-..+..-+.
T Consensus       332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~s  411 (622)
T COG5185         332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKS  411 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Confidence            34444444444444444445555554444432222233444455555555566555555555555554444444444444


Q ss_pred             HHHHHHHHHHHHHHH
Q 010679          212 YITMATEVEKLRAEL  226 (504)
Q Consensus       212 L~sme~EiekLraEL  226 (504)
                      |+..-+.+..|..+|
T Consensus       412 lek~~~~~~sl~~~i  426 (622)
T COG5185         412 LEKTLRQYDSLIQNI  426 (622)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            433334444444333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.29  E-value=0.00023  Score=80.37  Aligned_cols=107  Identities=16%  Similarity=0.162  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq  206 (504)
                      .|+.||.+++..-..+.++..+|+.+.-.|...+..|+.-..+.+.++.||..|..|++-|..+++.......-.+.++.
T Consensus        80 ~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qle  159 (717)
T PF09730_consen   80 RLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLE  159 (717)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555566666666666666665555544445566666666666666666666666555555556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccc
Q 010679          207 VMEKNYITMATEVEKLRAELMNAPNVD  233 (504)
Q Consensus       207 emek~L~sme~EiekLraELekle~~~  233 (504)
                      +.-..|+.-+..-..|++||+...+..
T Consensus       160 EALesl~~EReqk~~LrkEL~~~~~~~  186 (717)
T PF09730_consen  160 EALESLKSEREQKNALRKELDQHLNIE  186 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            655555555556677888888855533

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=98.29  E-value=0.00016  Score=83.19  Aligned_cols=52  Identities=23%  Similarity=0.240  Sum_probs=25.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       180 LrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      .++..+.|+.+.+.+-....+..+.+++|+..+...++.|+.+.++|..|++
T Consensus      1687 ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~ 1738 (1758)
T KOG0994|consen 1687 ARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEK 1738 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence            3344444554444444444444455555554444444444555555544444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.29  E-value=0.0002  Score=86.21  Aligned_cols=25  Identities=16%  Similarity=0.311  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          205 LQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       205 lqemek~L~sme~EiekLraELekl  229 (504)
                      +.++++++..++..+.++...+.++
T Consensus       850 ~~~le~~~~~~~~~~~~~~~~l~~l  874 (1201)
T PF12128_consen  850 RKELEEELKALEEQLEQLEEQLRRL  874 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=98.28  E-value=0.00037  Score=72.47  Aligned_cols=63  Identities=19%  Similarity=0.180  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccccccc
Q 010679          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT----MATEVEKLRAELMNAPNVDRRA  236 (504)
Q Consensus       174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~s----me~EiekLraELekle~~~~~~  236 (504)
                      +.++..++.+++.++.+++.....+.++.++++++++.+..    -..||.+|++++..|++..-|.
T Consensus       229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~  295 (325)
T PF08317_consen  229 KKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGWK  295 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCcE
Confidence            33444444444444444444444455555555555444433    2467778888888888777775

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.28  E-value=0.00036  Score=79.77  Aligned_cols=6  Identities=17%  Similarity=0.141  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 010679          182 QEYHHC  187 (504)
Q Consensus       182 qELq~L  187 (504)
                      .+.+++
T Consensus       443 ~eker~  448 (775)
T PF10174_consen  443 REKERL  448 (775)
T ss_pred             HHHHHH
Confidence            333333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.27  E-value=0.00035  Score=79.76  Aligned_cols=45  Identities=16%  Similarity=0.145  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG   95 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~   95 (504)
                      |+-+++++.++|..+...+..|+.....|..|++.+.++......
T Consensus       413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~  457 (1195)
T KOG4643|consen  413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTR  457 (1195)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555555555555555554444444433

>PRK01156 chromosome segregation protein; Provisional

Probab=98.27  E-value=0.00028  Score=82.50  Aligned_cols=11  Identities=9%  Similarity=0.069  Sum_probs=4.4

Q ss_pred             CChHHHHHHHH
Q 010679           46 PPPEVMEQKIA   56 (504)
Q Consensus        46 p~~~~LEqeLe   56 (504)
                      .....++....
T Consensus       159 ~~~~~~~~~~~  169 (895)
T PRK01156        159 LEINSLERNYD  169 (895)
T ss_pred             hChHHHHHHHH
Confidence            34444433333

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=98.25  E-value=0.00031  Score=79.38  Aligned_cols=51  Identities=24%  Similarity=0.199  Sum_probs=25.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE  220 (504)
Q Consensus       170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Eie  220 (504)
                      ++.+++|+..+..|+++++..+............++.+..++.+.+..++.
T Consensus       496 le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~  546 (980)
T KOG0980|consen  496 LESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELV  546 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            344445555555555555555555544455555555555555444444443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.24  E-value=0.00026  Score=78.95  Aligned_cols=11  Identities=18%  Similarity=0.453  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHH
Q 010679          107 QMRNLTEKIAK  117 (504)
Q Consensus       107 eL~eL~eki~k  117 (504)
                      .+..+.++|+.
T Consensus       283 ~~~~i~~~Id~  293 (569)
T PRK04778        283 KNEEIQERIDQ  293 (569)
T ss_pred             HHHHHHHHHHH
Confidence            33444444433

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=98.23  E-value=0.00043  Score=79.78  Aligned_cols=55  Identities=18%  Similarity=0.080  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      ++..+.|+.|..+|-.+.....+.+.+|+-.+.+-+..|+..+.+|..|+++|+.
T Consensus      1688 r~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1688 RERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence            3335555555555544444444444444444444444455555555555555444

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=98.23  E-value=0.0002  Score=78.20  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           69 NQRLAATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        69 ~qrLe~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      .+-|+.++..++++|+.++.++...+.+
T Consensus       163 ~~fl~~ql~~~~~~L~~ae~~l~~f~~~  190 (498)
T TIGR03007       163 QRFIDEQIKTYEKKLEAAENRLKAFKQE  190 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445566666666666666666655443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.23  E-value=0.00025  Score=65.41  Aligned_cols=17  Identities=24%  Similarity=0.489  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679          148 ELIAKVHQLTQDLQRAH  164 (504)
Q Consensus       148 eL~aqvq~L~~ELq~l~  164 (504)
                      .|..+|+.|+.+|....
T Consensus        77 ~l~rriq~LEeele~ae   93 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAE   93 (143)
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            44444444544444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=98.23  E-value=0.00046  Score=73.32  Aligned_cols=38  Identities=16%  Similarity=0.105  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679           58 QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG   95 (504)
Q Consensus        58 ~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~   95 (504)
                      +++-|++|...+.+-+..|..|+-.-.-+...+..|+.
T Consensus       315 LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~  352 (527)
T PF15066_consen  315 LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQM  352 (527)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence            34445555555555555555554433334444444433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.22  E-value=0.00031  Score=78.73  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010679          204 SLQVMEKNYITMATEVEKLRAEL  226 (504)
Q Consensus       204 qlqemek~L~sme~EiekLraEL  226 (504)
                      +++......+.+..+.+.|..++
T Consensus       238 ~Lqqy~a~~q~l~~e~e~L~~q~  260 (617)
T PF15070_consen  238 HLQQYVAAYQQLASEKEELHKQL  260 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444555555555554

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=98.21  E-value=0.001  Score=64.49  Aligned_cols=22  Identities=14%  Similarity=0.342  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010679          206 QVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       206 qemek~L~sme~EiekLraELe  227 (504)
                      .++...+..+..||..|...|.
T Consensus       167 ~~~~~~~~~l~~ei~~L~~klk  188 (194)
T PF15619_consen  167 KEAQEEVKSLQEEIQRLNQKLK  188 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555544443

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=98.21  E-value=0.00031  Score=74.62  Aligned_cols=105  Identities=15%  Similarity=0.166  Sum_probs=65.1

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010679          124 TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE  203 (504)
Q Consensus       124 ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~e  203 (504)
                      .++.|+.|++..+.+|+.|++.+..|..++..-.....+.+.-.++-..|..+++.+.-+.+.|+..+...+-..+..-+
T Consensus       331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~  410 (622)
T COG5185         331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFK  410 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHH
Confidence            45567777777777777777777777776665443334333333334455666666666667776666665555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          204 SLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       204 qlqemek~L~sme~EiekLraELek  228 (504)
                      .+.+.-.+++++..+|...++.|-.
T Consensus       411 slek~~~~~~sl~~~i~~~~~~i~~  435 (622)
T COG5185         411 SLEKTLRQYDSLIQNITRSRSQIGH  435 (622)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHhh
Confidence            5555566666677777666666544

>smart00787 Spc7 Spc7 kinetochore protein

Probab=98.20  E-value=0.00062  Score=70.49  Aligned_cols=68  Identities=19%  Similarity=0.174  Sum_probs=53.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcccccccc
Q 010679          169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM----ATEVEKLRAELMNAPNVDRRA  236 (504)
Q Consensus       169 ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sm----e~EiekLraELekle~~~~~~  236 (504)
                      ++...+.+++.++.+++.++..|+...+++.++.++++++++.++..    ..|+.+|++++..+++.+-|.
T Consensus       219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~~  290 (312)
T smart00787      219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGWK  290 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence            34555666777777777777788877888888888888888777653    689999999999999888775

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=98.20  E-value=0.0002  Score=65.10  Aligned_cols=89  Identities=21%  Similarity=0.152  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 010679          111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGT  190 (504)
Q Consensus       111 L~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~e  190 (504)
                      +.+--.+++.|+........+|..++.++..+..++.+|+.+++.....|...+..-      ..+-..|..++..++..
T Consensus        40 a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw------~~qk~~le~e~~~~~~r  113 (132)
T PF07926_consen   40 AQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW------EEQKEQLEKELSELEQR  113 (132)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHH
Confidence            333344556665555555566666666666666666666666666655554333221      12223344444444444


Q ss_pred             HHHHHHHHHHHHHHH
Q 010679          191 YEYEKKFYNDHLESL  205 (504)
Q Consensus       191 Le~~kk~~~el~eql  205 (504)
                      ++.+...+.-|-.++
T Consensus       114 ~~dL~~QN~lLh~Ql  128 (132)
T PF07926_consen  114 IEDLNEQNKLLHDQL  128 (132)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=98.20  E-value=0.00095  Score=64.64  Aligned_cols=16  Identities=25%  Similarity=0.360  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHhc
Q 010679          214 TMATEVEKLRAELMNA  229 (504)
Q Consensus       214 sme~EiekLraELekl  229 (504)
                      .+..++..+..+|..|
T Consensus       168 ~~~~~~~~l~~ei~~L  183 (194)
T PF15619_consen  168 EAQEEVKSLQEEIQRL  183 (194)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444443

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.20  E-value=0.00025  Score=81.14  Aligned_cols=73  Identities=12%  Similarity=0.280  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK-SERELQMRNLTEKIAKMEAELKTA  125 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~-ae~E~eL~eL~eki~kLEaEL~el  125 (504)
                      ++.++...+.|+.|++++++|..+.+.++++ ...+..|+.+......+. .+...+...+.+....++.+++++
T Consensus       194 e~~~~~~~~~l~~L~~~~~~l~kdVE~~rer-~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l  267 (1072)
T KOG0979|consen  194 EDKLTTKTEKLNRLEDEIDKLEKDVERVRER-ERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKL  267 (1072)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444322 222333333333222211 123444555555555555555443

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=98.20  E-value=0.0023  Score=65.57  Aligned_cols=174  Identities=18%  Similarity=0.163  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh-H
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE-P  127 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele-~  127 (504)
                      ..+..+|..+..+-..|..++..+......|..++..++..-..+......   +-+--...|..+|..++.+...+. .
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEq---EEE~isN~LlKkl~~l~keKe~L~~~   99 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQ---EEEFISNTLLKKLQQLKKEKETLALK   99 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555444444444444444444444444333333333222211   112223566677777776655442 3


Q ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010679          128 VKLEFQ----KSKTEAQNLVVAREELIAKVHQLT-QDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHL  202 (504)
Q Consensus       128 LkaELe----qLr~ELqeL~aerqeL~aqvq~L~-~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~  202 (504)
                      +..|-+    .|...|.+|+.+..+|...+..-. -.+.+|..   +|..+..++..++.++++|+.+...+...++...
T Consensus       100 ~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k---~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQ  176 (310)
T PF09755_consen  100 YEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQK---KIERLEKEKSAKQEELERLRREKVDLENTLEQEQ  176 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Confidence            333322    222233333333333333222111 01112222   2223333344444444444444333333333333


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          203 E-SLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       203 e-qlqemek~L~sme~EiekLraELek  228 (504)
                      + -+..+.+++..|..+-..|+++|+.
T Consensus       177 E~lvN~L~Kqm~~l~~eKr~Lq~~l~~  203 (310)
T PF09755_consen  177 EALVNRLWKQMDKLEAEKRRLQEKLEQ  203 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3 2455777888888888888888876

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=98.19  E-value=0.00051  Score=72.58  Aligned_cols=27  Identities=19%  Similarity=0.249  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          203 ESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       203 eqlqemek~L~sme~EiekLraELekl  229 (504)
                      +++.+++.++..++.+++.++.+++++
T Consensus       246 ~~l~~~~~~l~~~~~~l~~~~~~l~~~  272 (423)
T TIGR01843       246 EELTEAQARLAELRERLNKARDRLQRL  272 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344455555555555555555555543

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.19  E-value=0.00028  Score=85.61  Aligned_cols=119  Identities=16%  Similarity=0.183  Sum_probs=68.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch------H---HHHHHHHHHHHHHHH
Q 010679           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK------S---ERELQMRNLTEKIAK  117 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~------a---e~E~eL~eL~eki~k  117 (504)
                      .+..|..+.+++..++.-+..++.+|..++..+...++.++..|...+.......      .   ..-.++..|.+.-..
T Consensus      1154 iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~ 1233 (1822)
T KOG4674|consen 1154 IVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKV 1233 (1822)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHH
Confidence            3456666777777777778888888888888888888887777777666542211      0   111222323333222


Q ss_pred             HHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          118 MEAEL----KTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (504)
Q Consensus       118 LEaEL----~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~  165 (504)
                      |.+++    ..++.|..+|+.++.++..++..+.+|..+++..+.++..++.
T Consensus      1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~ 1285 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEE 1285 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32222    2344555666666666666666666666665555555554443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.18  E-value=0.0003  Score=80.18  Aligned_cols=37  Identities=11%  Similarity=0.169  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       195 kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      +..++++....+.+=.+-..+...|+.++.+|+..++
T Consensus       459 k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~  495 (1200)
T KOG0964|consen  459 KRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEK  495 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333444555555555555443

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=98.18  E-value=0.0008  Score=73.90  Aligned_cols=100  Identities=23%  Similarity=0.215  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--h---hhHHHHHHHHHHHHHHHHHhhHHHHH----HHHHH
Q 010679          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ--Q---IPALLSELESLRQEYHHCRGTYEYEK----KFYND  200 (504)
Q Consensus       130 aELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq--q---l~~L~~EIeaLrqELq~LR~eLe~~k----k~~~e  200 (504)
                      +|+.-+..++...+..+..|+.++..|..++.......+  +   +..+...+..+..++..|-.+++.++    +..+.
T Consensus       235 aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~  314 (629)
T KOG0963|consen  235 AEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREK  314 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556666667777777777777777754433221  1   11222222223334444444444333    23344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          201 HLESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       201 l~eqlqemek~L~sme~EiekLraELekl  229 (504)
                      +..+++.+++++.....+|++|+.+|.+.
T Consensus       315 ~~~qI~~le~~l~~~~~~leel~~kL~~~  343 (629)
T KOG0963|consen  315 HKAQISALEKELKAKISELEELKEKLNSR  343 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45566667777777777777776666554

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=98.18  E-value=3.4e-07  Score=104.24  Aligned_cols=68  Identities=16%  Similarity=0.175  Sum_probs=0.0

Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       163 l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      +..++++...++.+++.+++++.++..++.........+..++..+.+.+..+..+.+.+..+.+.++
T Consensus       351 LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~  418 (713)
T PF05622_consen  351 LEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLR  418 (713)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455556666666666666666666666666665666666666666666666655555554

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.17  E-value=0.00044  Score=84.22  Aligned_cols=30  Identities=17%  Similarity=0.273  Sum_probs=22.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHG   77 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~   77 (504)
                      ++.|+.+|..+..++..|......|..+..
T Consensus       751 IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~  780 (1353)
T TIGR02680       751 LAAVDDELAELARELRALGARQRALADELA  780 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888888888888777777766543

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=98.17  E-value=0.0028  Score=61.88  Aligned_cols=180  Identities=17%  Similarity=0.190  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHH-------HHHHHHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSEREL-------QMRNLTEKIAKMEAEL  122 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~-------eL~eL~eki~kLEaEL  122 (504)
                      .++..|.....++...+.++..|...+..+.........-+..+...|.++..+.+.       ++..+....+.+.++|
T Consensus         6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL   85 (207)
T PF05010_consen    6 DLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADL   85 (207)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHH
Confidence            455556666666555555555555555555555444444444444444444333332       3333333333333333


Q ss_pred             HHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHhhHHH----
Q 010679          123 KTAE----PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA-LLSELESLRQEYHHCRGTYEY----  193 (504)
Q Consensus       123 ~ele----~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~-L~~EIeaLrqELq~LR~eLe~----  193 (504)
                      ..++    .|-...+.++..+..+...-..|...++.....|....++.+.+.. ....|+.+..||..++...+.    
T Consensus        86 ~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~a  165 (207)
T PF05010_consen   86 NSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLA  165 (207)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3222    1222223333333333333333333333333333322222222211 123355556666665554332    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          194 EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       194 ~kk~~~el~eqlqemek~L~sme~EiekLraELekl  229 (504)
                      ++..+...+-+++.++..|+...+|.+.|..=.+.|
T Consensus       166 Lqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL  201 (207)
T PF05010_consen  166 LQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL  201 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333445555555555555555554444433

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.16  E-value=0.00054  Score=83.42  Aligned_cols=50  Identities=14%  Similarity=0.123  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraEL  226 (504)
                      ++++.++|+.++.+|+.+.+.+..+.+++.++.+.+..+..++..++..+
T Consensus       923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~  972 (1353)
T TIGR02680       923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATL  972 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555566666666666655555555555555555555555554333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.16  E-value=0.00021  Score=83.02  Aligned_cols=18  Identities=17%  Similarity=0.351  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010679           63 QKLATENQRLAATHGTLR   80 (504)
Q Consensus        63 q~Le~e~qrLe~qi~~Lk   80 (504)
                      ..|+....++..+..+|+
T Consensus       468 keL~e~i~~lk~~~~el~  485 (1317)
T KOG0612|consen  468 KELEETIEKLKSEESELQ  485 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444433

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=98.16  E-value=0.00041  Score=73.27  Aligned_cols=58  Identities=14%  Similarity=0.082  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLE-SLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~e-qlqemek~L~sme~EiekLraELekle~  231 (504)
                      +.++..++.++..++.+++..+..+..+.. ...+....+..+..++.+++.+++.++.
T Consensus       209 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~  267 (423)
T TIGR01843       209 QGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARD  267 (423)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444433333322 2344556677788888888888877654

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.16  E-value=0.00036  Score=64.37  Aligned_cols=25  Identities=12%  Similarity=0.185  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          202 LESLQVMEKNYITMATEVEKLRAEL  226 (504)
Q Consensus       202 ~eqlqemek~L~sme~EiekLraEL  226 (504)
                      ..+++.++.....++..++.|..++
T Consensus       114 eRkv~~le~~~~~~E~k~eel~~k~  138 (143)
T PF12718_consen  114 ERKVKALEQERDQWEEKYEELEEKY  138 (143)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3333333333334444444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.15  E-value=0.00058  Score=82.94  Aligned_cols=16  Identities=25%  Similarity=0.565  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          108 MRNLTEKIAKMEAELK  123 (504)
Q Consensus       108 L~eL~eki~kLEaEL~  123 (504)
                      ++.|...|..|+.++.
T Consensus      1309 ~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1309 YEKLKSEISRLKEELE 1324 (1822)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4455555555555554

>smart00787 Spc7 Spc7 kinetochore protein

Probab=98.14  E-value=0.00016  Score=74.77  Aligned_cols=25  Identities=20%  Similarity=0.348  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH
Q 010679          108 MRNLTEKIAKMEAELKTAEPVKLEF  132 (504)
Q Consensus       108 L~eL~eki~kLEaEL~ele~LkaEL  132 (504)
                      +..|.++...|+.++..+..+..++
T Consensus       174 ~~~l~~~~~~L~~e~~~L~~~~~e~  198 (312)
T smart00787      174 KPKLRDRKDALEEELRQLKQLEDEL  198 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3444444555555555444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.14  E-value=0.00092  Score=74.24  Aligned_cols=14  Identities=14%  Similarity=0.176  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHHH
Q 010679          106 LQMRNLTEKIAKME  119 (504)
Q Consensus       106 ~eL~eL~eki~kLE  119 (504)
                      .++.++...+.+++
T Consensus       151 ~k~ae~~~lr~k~d  164 (716)
T KOG4593|consen  151 DKLAELGTLRNKLD  164 (716)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=98.14  E-value=0.00089  Score=75.81  Aligned_cols=21  Identities=38%  Similarity=0.222  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKF  197 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~  197 (504)
                      ++.+++|+..+..+++.++..
T Consensus       496 le~l~~El~~l~~e~~~lq~~  516 (980)
T KOG0980|consen  496 LESLRQELALLLIELEELQRT  516 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444433

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=98.13  E-value=0.0011  Score=64.25  Aligned_cols=53  Identities=28%  Similarity=0.440  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 010679          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK----NYITMATEVEKLRAEL  226 (504)
Q Consensus       174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek----~L~sme~EiekLraEL  226 (504)
                      .++|...++..++.+..++.++..+.+.++++-...+    +...|-+....|+.+|
T Consensus       144 ~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l  200 (202)
T PF06818_consen  144 RAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL  200 (202)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333333344444566666666666666544444    4445666666666665

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=98.13  E-value=0.0012  Score=73.67  Aligned_cols=183  Identities=15%  Similarity=0.204  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-------HHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK-------SERELQMRNLTEKIAKMEAE  121 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~-------ae~E~eL~eL~eki~kLEaE  121 (504)
                      ..+++.|+.+..+|+.+..++..|...-...+.++..++...+.+++.+....       ..++.++..+.....+++.-
T Consensus       104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~l  183 (560)
T PF06160_consen  104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEEL  183 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666677777666666666666666666666666666666654322       23344444444444433332


Q ss_pred             HH---------HHhHHHHHHHHHHHHHHH------------------HHHHHHH------------HHHHHHHHHHHHHH
Q 010679          122 LK---------TAEPVKLEFQKSKTEAQN------------------LVVAREE------------LIAKVHQLTQDLQR  162 (504)
Q Consensus       122 L~---------ele~LkaELeqLr~ELqe------------------L~aerqe------------L~aqvq~L~~ELq~  162 (504)
                      ..         .+..++.++..++..+.+                  |..-..+            +..+++.+..+|..
T Consensus       184 t~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~  263 (560)
T PF06160_consen  184 TENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEE  263 (560)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Confidence            21         011222222222222211                  1111111            11122222222222


Q ss_pred             HHHhhhh--hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          163 AHTDVQQ--IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       163 l~~elqq--l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      +...+.+  +......++.+..+|+.+-..++.+-.....+.+.+..+.+.+..+......|..+++.+..
T Consensus       264 ~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~  334 (560)
T PF06160_consen  264 ALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQ  334 (560)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222  22334445555666666666666666666666666666666666666666666666666554

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.12  E-value=0.0008  Score=76.16  Aligned_cols=49  Identities=8%  Similarity=0.126  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (504)
Q Consensus       178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraEL  226 (504)
                      ..+..+++.++.++..++..+..+.+++..++++++.+++++++++...
T Consensus       424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  472 (650)
T TIGR03185       424 AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQK  472 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444444444444444443333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.11  E-value=0.00047  Score=76.88  Aligned_cols=33  Identities=6%  Similarity=0.174  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          194 EKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (504)
Q Consensus       194 ~kk~~~el~eqlqemek~L~sme~EiekLraEL  226 (504)
                      ..+.+.++.+.+..+.++...+......++.-|
T Consensus       474 i~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~I  506 (569)
T PRK04778        474 VNRLLEEATEDVETLEEETEELVENATLTEQLI  506 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444443333333

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=98.11  E-value=0.0017  Score=62.25  Aligned_cols=32  Identities=22%  Similarity=0.199  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           62 MQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (504)
Q Consensus        62 Iq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L   93 (504)
                      |..|...++-|+.+++..+..+..+++.|..+
T Consensus         6 va~lnrri~~leeele~aqErl~~a~~KL~Ea   37 (205)
T KOG1003|consen    6 VAALNRRIQLLEEELDRAQERLATALQKLEEA   37 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444443

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=98.10  E-value=0.0018  Score=65.76  Aligned_cols=100  Identities=15%  Similarity=0.221  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679          131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ----IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (504)
Q Consensus       131 ELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqq----l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq  206 (504)
                      ++..++....-|..++.+.+.++..|+.++...+..+.+    ++.++.++...+.++.+++..+..++..+.....+-.
T Consensus       138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqe  217 (305)
T PF14915_consen  138 DVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQE  217 (305)
T ss_pred             hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            344455545555556666666666666666544433221    3445556666666666666666666666666555556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          207 VMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       207 emek~L~sme~EiekLraELekle  230 (504)
                      .+++.|..+..|-.-|+.+|+.+.
T Consensus       218 s~eERL~QlqsEN~LLrQQLddA~  241 (305)
T PF14915_consen  218 SLEERLSQLQSENMLLRQQLDDAH  241 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666665544

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=98.09  E-value=0.0005  Score=78.93  Aligned_cols=28  Identities=21%  Similarity=0.214  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           69 NQRLAATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        69 ~qrLe~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      .+=|..++.+++++|+.++.++...+.+
T Consensus       196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~  223 (754)
T TIGR01005       196 ADFLAPEIADLSKQSRDAEAEVAAYRAQ  223 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666777777777766666666554

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=98.09  E-value=0.0038  Score=61.00  Aligned_cols=23  Identities=9%  Similarity=0.096  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010679          132 FQKSKTEAQNLVVAREELIAKVH  154 (504)
Q Consensus       132 LeqLr~ELqeL~aerqeL~aqvq  154 (504)
                      .+++..+|..+.....+|-.+..
T Consensus        78 rdq~~~dL~s~E~sfsdl~~rye  100 (207)
T PF05010_consen   78 RDQAYADLNSLEKSFSDLHKRYE  100 (207)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHH
Confidence            33333333333333333333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=98.07  E-value=0.0015  Score=70.92  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=12.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q 010679           48 PEVMEQKIASQHVEMQKLATENQ   70 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~q   70 (504)
                      ...++.++..+..++.+|..+..
T Consensus        99 ~~~~~~~~~~~~~~~~rL~a~~~  121 (457)
T TIGR01000        99 KQLLEQQLDNLKDQKKSLDTLKQ  121 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.06  E-value=0.0014  Score=69.14  Aligned_cols=51  Identities=20%  Similarity=0.205  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      ..++.++..++.+++.|+.+-.-.......+++|...+..+...|++.+++
T Consensus       218 ~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~re  268 (502)
T KOG0982|consen  218 IDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRRE  268 (502)
T ss_pred             hhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            456667777777777666654444455667777777777777766666544

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=98.06  E-value=0.0039  Score=62.63  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccc
Q 010679          211 NYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       211 ~L~sme~EiekLraELekle~  231 (504)
                      .++.++.+|.+|+++|+.|..
T Consensus       201 ~i~el~e~I~~L~~eV~~L~~  221 (258)
T PF15397_consen  201 EIDELEEEIPQLRAEVEQLQA  221 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555443

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=98.06  E-value=0.00029  Score=78.48  Aligned_cols=55  Identities=22%  Similarity=0.341  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (504)
Q Consensus       172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraEL  226 (504)
                      .+..+|+.+...+..+...++.....+..+.+.++++.++|..++.+...+...|
T Consensus       348 ~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l  402 (560)
T PF06160_consen  348 ELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESL  402 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444433333333333333333333333333333333333333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=98.04  E-value=0.00011  Score=81.22  Aligned_cols=12  Identities=25%  Similarity=0.457  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q 010679          150 IAKVHQLTQDLQ  161 (504)
Q Consensus       150 ~aqvq~L~~ELq  161 (504)
                      ..+++++.++|+
T Consensus       169 ~~~~qe~naeL~  180 (916)
T KOG0249|consen  169 EEQLEELNAELQ  180 (916)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=98.04  E-value=0.0014  Score=72.11  Aligned_cols=18  Identities=17%  Similarity=0.222  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHhccc
Q 010679          214 TMATEVEKLRAELMNAPN  231 (504)
Q Consensus       214 sme~EiekLraELekle~  231 (504)
                      .+++++..+..+|+++++
T Consensus       321 ~le~~l~~~~~~leel~~  338 (629)
T KOG0963|consen  321 ALEKELKAKISELEELKE  338 (629)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345555555555555544

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=98.04  E-value=0.0011  Score=60.88  Aligned_cols=29  Identities=21%  Similarity=0.360  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           61 EMQKLATENQRLAATHGTLRQELAAAQHE   89 (504)
Q Consensus        61 EIq~Le~e~qrLe~qi~~LkqELa~lqqE   89 (504)
                      ++.....+...|...+..|..+|+..+..
T Consensus        11 kLK~~~~e~dsle~~v~~LEreLe~~q~~   39 (140)
T PF10473_consen   11 KLKESESEKDSLEDHVESLERELEMSQEN   39 (140)
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Confidence            33334444444444444444444444333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=98.04  E-value=0.00096  Score=70.03  Aligned_cols=35  Identities=17%  Similarity=0.229  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010679          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV  207 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqe  207 (504)
                      +..-|+.|+.|++++|..+...++.+.+...++.+
T Consensus       251 ~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~  285 (552)
T KOG2129|consen  251 EKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRA  285 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34447778888888888777777666655555443

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=98.03  E-value=0.0013  Score=65.15  Aligned_cols=18  Identities=28%  Similarity=0.361  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010679          103 ERELQMRNLTEKIAKMEA  120 (504)
Q Consensus       103 e~E~eL~eL~eki~kLEa  120 (504)
                      +++.+|..|+.+..+++.
T Consensus        49 elesqL~q~etrnrdl~t   66 (333)
T KOG1853|consen   49 ELESQLDQLETRNRDLET   66 (333)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444433

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=98.03  E-value=0.0024  Score=66.04  Aligned_cols=58  Identities=16%  Similarity=0.212  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      +.|++.+...+..|+.+...++..++.....+-+|......+..+++.++.++++|++
T Consensus       243 k~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~  300 (309)
T PF09728_consen  243 KKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK  300 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555544444444444444444544545555556666666655554

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=98.03  E-value=0.0027  Score=65.68  Aligned_cols=38  Identities=11%  Similarity=0.048  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       191 Le~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      |+.+-.++..+.+++..++++...+...|.+-+.-|+.
T Consensus       191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~  228 (319)
T PF09789_consen  191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER  228 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444556677777888888888888888888888774

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.03  E-value=0.00093  Score=77.91  Aligned_cols=17  Identities=18%  Similarity=0.309  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHhccc
Q 010679          215 MATEVEKLRAELMNAPN  231 (504)
Q Consensus       215 me~EiekLraELekle~  231 (504)
                      ++.+++-+..+++++.+
T Consensus       672 ~e~~lk~~q~~~eq~~~  688 (1317)
T KOG0612|consen  672 LERKLKMLQNELEQENA  688 (1317)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45555556666655544

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.0015  Score=70.73  Aligned_cols=54  Identities=24%  Similarity=0.300  Sum_probs=32.5

Q ss_pred             ChHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010679           47 PPEVMEQKIASQHVEMQK--------------LATENQRLAATHGTLRQELAAAQHELQILHGQIGGM  100 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~--------------Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l  100 (504)
                      .++.+.++|+.+..++..              +..+...|+.++++|+.+++.++.||+.++..+.+.
T Consensus         9 ~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~   76 (772)
T KOG0999|consen    9 EVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQY   76 (772)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666665555542              334445566666666667777777777777666543

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=98.01  E-value=0.0013  Score=72.55  Aligned_cols=53  Identities=28%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhccc
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAA--AQHELQILHGQIGGM  100 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~--lqqEL~~L~~~L~~l  100 (504)
                      .+..-++|..+..+++.+..++..|..++..|+.+|+.  ..++|......|..+
T Consensus       404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~l  458 (961)
T KOG4673|consen  404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQL  458 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            35556677777777777777777777777767666654  233444444444443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=98.01  E-value=0.00046  Score=70.68  Aligned_cols=36  Identities=17%  Similarity=0.350  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE   89 (504)
Q Consensus        54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqE   89 (504)
                      .++.++.+++.|+.+|..|..+...|+.+-..+.++
T Consensus       161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek  196 (306)
T PF04849_consen  161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK  196 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH
Confidence            345556666666666666666666666554444333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.99  E-value=0.0043  Score=63.06  Aligned_cols=102  Identities=13%  Similarity=0.214  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH--
Q 010679           50 VMEQKIASQHVEMQKLATENQ----RLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK--  123 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~q----rLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~--  123 (504)
                      .|..+|..++-||..+..+++    +...+++-+++..+.++..|..-...|.+.......++..|.++...|..+|.  
T Consensus         3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~E   82 (305)
T PF14915_consen    3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKE   82 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHh
Confidence            467888888888887776654    34556666666666666665555555544444455666677766555555443  


Q ss_pred             --HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          124 --TAEPVKLEFQKSKTEAQNLVVAREELIA  151 (504)
Q Consensus       124 --ele~LkaELeqLr~ELqeL~aerqeL~a  151 (504)
                        .-+.|..||+..+..|.....+..+-..
T Consensus        83 Kq~kerLEtEiES~rsRLaaAi~d~dqsq~  112 (305)
T PF14915_consen   83 KQNKERLETEIESYRSRLAAAIQDHDQSQT  112 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence              3346667776666665555444443333

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=97.99  E-value=0.0016  Score=69.97  Aligned_cols=99  Identities=16%  Similarity=0.179  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010679          135 SKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ----QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK  210 (504)
Q Consensus       135 Lr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq----ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek  210 (504)
                      +..++.+++.++..++..++.++.++.++..+..    +|.+++.+|..+..|.+.+..-|...+..-.++..++++|+.
T Consensus       203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleD  282 (596)
T KOG4360|consen  203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELED  282 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3444555555555555555555555555444432    234445555555555555555555556666667777788888


Q ss_pred             HHHHHHHHHHHHHHHHHhccccc
Q 010679          211 NYITMATEVEKLRAELMNAPNVD  233 (504)
Q Consensus       211 ~L~sme~EiekLraELekle~~~  233 (504)
                      +..+...++...++||.+|+..+
T Consensus       283 kyAE~m~~~~EaeeELk~lrs~~  305 (596)
T KOG4360|consen  283 KYAECMQMLHEAEEELKCLRSCD  305 (596)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCC
Confidence            88888888888899999987644

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=97.98  E-value=0.00037  Score=77.18  Aligned_cols=36  Identities=14%  Similarity=0.304  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELA   84 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa   84 (504)
                      .++|.+|+....++..++..+..|...++.++++|.
T Consensus        94 dklE~~Lankda~lrq~eekn~slqerLelaE~~l~  129 (916)
T KOG0249|consen   94 DKLENELANKDADLRQNEEKNRSLQERLELAEPKLQ  129 (916)
T ss_pred             HHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhH
Confidence            566777777777776666666666666665555544

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.98  E-value=0.0015  Score=73.94  Aligned_cols=107  Identities=14%  Similarity=0.170  Sum_probs=76.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679          125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES  204 (504)
Q Consensus       125 le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq  204 (504)
                      .+.+..+...|+.+|.+++..-..|-....+|+.+.-.++..+.-+..-+-|.+.++.||.++..+++.++..++++...
T Consensus        71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rL  150 (717)
T PF09730_consen   71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARL  150 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566667777788877777777777777778777777777777777777888999999999999999888888887776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          205 LQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       205 lqemek~L~sme~EiekLraELekle~  231 (504)
                      ..-.+++|+..-.-|+.-+.+-..|++
T Consensus       151 k~iae~qleEALesl~~EReqk~~Lrk  177 (717)
T PF09730_consen  151 KEIAEKQLEEALESLKSEREQKNALRK  177 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665666655544444444444444444

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=97.98  E-value=0.0026  Score=62.30  Aligned_cols=49  Identities=22%  Similarity=0.298  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      ..|++.|....+.|..+...+.++......++.++..+..++..+....
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A   74 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA   74 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666666666666666666666666555555544

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=97.98  E-value=0.00046  Score=75.32  Aligned_cols=50  Identities=22%  Similarity=0.232  Sum_probs=25.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           48 PEVMEQKIASQHVEMQKLATENQ--------RLAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~q--------rLe~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      ...++++++....++.....++.        .+..++..+++++..++.++..++..+
T Consensus       170 l~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~  227 (498)
T TIGR03007       170 IKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQR  227 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777665543221        233444555555554444444444433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=0.0045  Score=69.68  Aligned_cols=56  Identities=18%  Similarity=0.245  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010679          178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (504)
Q Consensus       178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~  233 (504)
                      +.|+.+++.....++.++..+.++...+..+..++..++.|+++|+.+|+.+.+.+
T Consensus       569 ~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~  624 (698)
T KOG0978|consen  569 EDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEE  624 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            33333333444444444444444444444444555556666666666666665544

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=97.97  E-value=0.0052  Score=61.80  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          193 YEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       193 ~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      ..++.+....+.+.++++.+..+..|+++|+.++.+.++
T Consensus       190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re  228 (258)
T PF15397_consen  190 VMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPRE  228 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence            345666667777788888888888888888888775443

>PF13514 AAA_27: AAA domain

Probab=97.97  E-value=0.0028  Score=75.95  Aligned_cols=36  Identities=17%  Similarity=0.275  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        62 Iq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      +..+..+...+...+..++.++.....++..+...+
T Consensus       738 l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l  773 (1111)
T PF13514_consen  738 LREALAEIRELRRRIEQMEADLAAFEEQVAALAERL  773 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            444444455555555555555555555555554443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.96  E-value=1.6e-06  Score=98.83  Aligned_cols=94  Identities=16%  Similarity=0.163  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          136 KTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM  215 (504)
Q Consensus       136 r~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sm  215 (504)
                      +.+++.|+.+...|..++..|+.++.+......++..++.+|..|+.++......++.+...+..+.+++..++...+.+
T Consensus       331 k~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l  410 (713)
T PF05622_consen  331 KRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERL  410 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444444445554444444444444445555555554444444444444444445554444444444


Q ss_pred             HHHHHHHHHHHHhc
Q 010679          216 ATEVEKLRAELMNA  229 (504)
Q Consensus       216 e~EiekLraELekl  229 (504)
                      ..+++.|+..++.+
T Consensus       411 ~~e~~~L~e~~eeL  424 (713)
T PF05622_consen  411 QEERDSLRETNEEL  424 (713)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHHHHHh
Confidence            44444444444443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=97.96  E-value=0.004  Score=60.66  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 010679          208 MEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       208 mek~L~sme~EiekLraELek  228 (504)
                      +++.+..|...+++..++|..
T Consensus       148 LEkKl~~l~~~lE~keaqL~e  168 (201)
T PF13851_consen  148 LEKKLQALSEQLEKKEAQLNE  168 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444443

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=97.95  E-value=0.003  Score=67.28  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRL   72 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrL   72 (504)
                      +.+++++..++.||+.|..+++++
T Consensus        90 Es~~~kl~RL~~Ev~EL~eEl~~~  113 (388)
T PF04912_consen   90 ESPEQKLQRLRREVEELKEELEKR  113 (388)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777777777777776664

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.95  E-value=0.0014  Score=75.68  Aligned_cols=35  Identities=11%  Similarity=0.199  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       196 k~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      ..+.++.+.++.+-+++..+.++|..++.++++++
T Consensus       856 ~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~  890 (1141)
T KOG0018|consen  856 DEINEVKKILRRLVKELTKLDKEITSIESKIERKE  890 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence            33344444445555555555555555555555543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.00091  Score=75.14  Aligned_cols=69  Identities=16%  Similarity=0.065  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK  123 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~  123 (504)
                      .++.++.+..-++.+...+.++..+++.+++...+++.+.+.++.++..    ...+...|+++..-++.++.
T Consensus       648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~----~~s~hsql~~q~~~Lk~qLg  716 (970)
T KOG0946|consen  648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQD----FISEHSQLKDQLDLLKNQLG  716 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence            3344444444444555555555555555555555555555555544443    22233344444444444443

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=97.93  E-value=0.0019  Score=74.26  Aligned_cols=30  Identities=13%  Similarity=0.129  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010679           71 RLAATHGTLRQELAAAQHELQILHGQIGGM  100 (504)
Q Consensus        71 rLe~qi~~LkqELa~lqqEL~~L~~~L~~l  100 (504)
                      ......+-|..+|..++++++..+.++.+.
T Consensus       191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~f  220 (754)
T TIGR01005       191 SNTAAADFLAPEIADLSKQSRDAEAEVAAY  220 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555555555555555555543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=97.91  E-value=0.005  Score=62.13  Aligned_cols=21  Identities=14%  Similarity=0.276  Sum_probs=9.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHH
Q 010679           46 PPPEVMEQKIASQHVEMQKLA   66 (504)
Q Consensus        46 p~~~~LEqeLe~~~eEIq~Le   66 (504)
                      |+|..|+..|+....+++...
T Consensus        17 ~~~~~l~~~~e~~~~~L~~~~   37 (264)
T PF06008_consen   17 PAPYKLLSSIEDLTNQLRSYR   37 (264)
T ss_pred             hhHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=97.90  E-value=0.0013  Score=69.93  Aligned_cols=56  Identities=16%  Similarity=0.164  Sum_probs=27.9

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010679           44 MMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM  100 (504)
Q Consensus        44 ~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l  100 (504)
                      ++|..+..=+.+.-+.+++. |...+++|..+....+..|..++-.-.-|++.++++
T Consensus       295 ~~~d~eqs~Eslqpleedma-LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeL  350 (527)
T PF15066_consen  295 KTPDTEQSFESLQPLEEDMA-LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKEL  350 (527)
T ss_pred             cCCCHHhhhhccCCcHHHHH-HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHH
Confidence            34555444445555544432 333455565555555555555555555555555443

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=97.90  E-value=0.0024  Score=68.62  Aligned_cols=26  Identities=27%  Similarity=0.380  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           71 RLAATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        71 rLe~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      -|+.++..++++|..++.+|...+.+
T Consensus       175 fl~~ql~~~~~~l~~ae~~l~~fr~~  200 (444)
T TIGR03017       175 WFVQQIAALREDLARAQSKLSAYQQE  200 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555544443

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PRK11281 hypothetical protein; Provisional

Probab=97.90  E-value=0.0011  Score=78.74  Aligned_cols=16  Identities=6%  Similarity=0.277  Sum_probs=9.5

Q ss_pred             CCChHHHHHHHHHHHH
Q 010679           45 MPPPEVMEQKIASQHV   60 (504)
Q Consensus        45 ~p~~~~LEqeLe~~~e   60 (504)
                      +|..+.++.+|+.+.+
T Consensus        35 ~p~~~~iq~~l~~~~~   50 (1113)
T PRK11281         35 LPTEADVQAQLDALNK   50 (1113)
T ss_pred             CCCHHHHHHHHHHhhc
Confidence            4666666666665543

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.89  E-value=0.0028  Score=70.16  Aligned_cols=30  Identities=20%  Similarity=0.253  Sum_probs=20.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHG   77 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~   77 (504)
                      ++.+|.++.+...|...|..+...|..++.
T Consensus       411 va~lEkKvqa~~kERDalr~e~kslk~ela  440 (961)
T KOG4673|consen  411 VATLEKKVQALTKERDALRREQKSLKKELA  440 (961)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            466777777777777777766665555543

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=97.89  E-value=0.00022  Score=73.83  Aligned_cols=62  Identities=18%  Similarity=0.126  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010679          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA  236 (504)
Q Consensus       175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~~  236 (504)
                      ++|..++.|++.+..+.+...+....+..++.++.++++++...++.+..+|++|++.+.++
T Consensus        78 ~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n  139 (314)
T PF04111_consen   78 QELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYN  139 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            34455555555555555566666777777888888889999999999999999999988765

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=97.89  E-value=0.0015  Score=74.55  Aligned_cols=27  Identities=11%  Similarity=0.208  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          204 SLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       204 qlqemek~L~sme~EiekLraELekle  230 (504)
                      |.+.+.+.|..+..+|+++..+|.+++
T Consensus       686 Q~~~I~~iL~~~~~~I~~~v~~ik~i~  712 (717)
T PF10168_consen  686 QKRTIKEILKQQGEEIDELVKQIKNIK  712 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=97.89  E-value=0.0016  Score=65.16  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          204 SLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       204 qlqemek~L~sme~EiekLraELekle  230 (504)
                      .+.++.+++..-..|..+|++||..|.
T Consensus       163 k~e~L~ekynkeveerkrle~e~k~lq  189 (307)
T PF10481_consen  163 KYEELQEKYNKEVEERKRLEAEVKALQ  189 (307)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            344444444444455555555555544

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.0015  Score=73.43  Aligned_cols=11  Identities=27%  Similarity=0.661  Sum_probs=4.1

Q ss_pred             HHHHHHHHhhh
Q 010679           87 QHELQILHGQI   97 (504)
Q Consensus        87 qqEL~~L~~~L   97 (504)
                      ++++..|+.++
T Consensus       705 ~~q~~~Lk~qL  715 (970)
T KOG0946|consen  705 KDQLDLLKNQL  715 (970)
T ss_pred             HHHHHHHHHHh
Confidence            33333333333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=97.87  E-value=0.0096  Score=61.64  Aligned_cols=87  Identities=15%  Similarity=0.268  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHH
Q 010679          145 AREELIAKVHQLTQDLQRAHTDVQQ----IPALLSELESLRQEYHHCRGTYEYEKKF-------YNDHLESLQVMEKNYI  213 (504)
Q Consensus       145 erqeL~aqvq~L~~ELq~l~~elqq----l~~L~~EIeaLrqELq~LR~eLe~~kk~-------~~el~eqlqemek~L~  213 (504)
                      ++.+|..+++.+..++.+++.+++.    .+++..|.+..+...++|-.+|.+.-..       ++.+..+.+-+.+++.
T Consensus       127 ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~  206 (319)
T PF09789_consen  127 EREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLK  206 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHH
Confidence            3444445555555555444444332    2345555666666666666666655322       4455555566777888


Q ss_pred             HHHHHHHHHHHHHHhccc
Q 010679          214 TMATEVEKLRAELMNAPN  231 (504)
Q Consensus       214 sme~EiekLraELekle~  231 (504)
                      .++.|+.-++..|.+...
T Consensus       207 q~qeE~~l~k~~i~KYK~  224 (319)
T PF09789_consen  207 QLQEEKELLKQTINKYKS  224 (319)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888888887665

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=97.87  E-value=0.0015  Score=70.78  Aligned_cols=29  Identities=7%  Similarity=0.012  Sum_probs=11.5

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010679          181 RQEYHHCRGTYEYEKKFYNDHLESLQVME  209 (504)
Q Consensus       181 rqELq~LR~eLe~~kk~~~el~eqlqeme  209 (504)
                      +..++.++..|...++....+.+.+..++
T Consensus       381 q~~l~~~~~~l~~i~~~q~~~~e~L~~Lr  409 (570)
T COG4477         381 QDNLEEIEKALTDIEDEQEKVQEHLTSLR  409 (570)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33344444444444443334333333333

>TIGR02977 phageshock_pspA phage shock protein A

Probab=97.85  E-value=0.0061  Score=59.99  Aligned_cols=47  Identities=11%  Similarity=0.154  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      .|++-|....+.|..+...+.++......++.++..++..+..+...
T Consensus        28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~   74 (219)
T TIGR02977        28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK   74 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444433

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>TIGR00634 recN DNA repair protein RecN

Probab=97.85  E-value=0.0045  Score=68.98  Aligned_cols=42  Identities=17%  Similarity=0.052  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L   93 (504)
                      .+++..+..+++.+..+++++..+...+.++++.++.++.++
T Consensus       160 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL  201 (563)
T TIGR00634       160 VKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL  201 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444444443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=97.85  E-value=0.0007  Score=77.36  Aligned_cols=25  Identities=8%  Similarity=0.157  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          205 LQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       205 lqemek~L~sme~EiekLraELekl  229 (504)
                      +.....+|...++-|..|-.+|..|
T Consensus       735 iaaAA~KLAECQeTI~sLGkQLksL  759 (769)
T PF05911_consen  735 IAAAAEKLAECQETIASLGKQLKSL  759 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3334444444455555555555444

The function of this family is unknown.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.84  E-value=0.0033  Score=57.78  Aligned_cols=33  Identities=18%  Similarity=0.323  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~EL  160 (504)
                      ++.++..+..++..+..++..+..+...|...+
T Consensus        57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l   89 (140)
T PF10473_consen   57 LEEELEELTSELNQLELELDTLRSEKENLDKEL   89 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=97.84  E-value=0.0093  Score=61.63  Aligned_cols=69  Identities=13%  Similarity=0.134  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAK  117 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~k  117 (504)
                      ..|+.-+..+++-.++....+..++..+..|-.+|++-++...+-.++-+++...++.+...|+.+|+-
T Consensus        89 ~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEF  157 (561)
T KOG1103|consen   89 DILDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEF  157 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444445555555544554444333333333333333444455555555443

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=97.83  E-value=0.008  Score=62.26  Aligned_cols=47  Identities=21%  Similarity=0.286  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~   98 (504)
                      +++|+.+..+...+..++.++..++..++.....+..+.+.+..++.
T Consensus        21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~   67 (309)
T PF09728_consen   21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS   67 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666666666666666666655555555555554443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF13514 AAA_27: AAA domain

Probab=97.83  E-value=0.0065  Score=72.93  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           61 EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        61 EIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      +.+.+..++.++..++..++.++..++.++...+..
T Consensus       674 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  709 (1111)
T PF13514_consen  674 RREQLEEELQQLEQELEEAEAELQEAQEALEEWQEE  709 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444

>PRK10698 phage shock protein PspA; Provisional

Probab=97.83  E-value=0.0066  Score=59.98  Aligned_cols=46  Identities=11%  Similarity=0.135  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG   95 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~   95 (504)
                      .|++-|....+.+..+...+.++..+...+++++..++.++..+..
T Consensus        28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~   73 (222)
T PRK10698         28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQE   73 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444433

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.82  E-value=0.0064  Score=71.47  Aligned_cols=44  Identities=25%  Similarity=0.292  Sum_probs=17.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010679          180 LRQEYHHCRGTYEYEKKFYND---HLESLQVMEKNYITMATEVEKLR  223 (504)
Q Consensus       180 LrqELq~LR~eLe~~kk~~~e---l~eqlqemek~L~sme~EiekLr  223 (504)
                      +..+++.++++++...+.+..   ..++++....++..+.++++++.
T Consensus       693 ~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  739 (908)
T COG0419         693 LEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLE  739 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444433333   33333333333333444444443

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=97.81  E-value=0.011  Score=70.44  Aligned_cols=53  Identities=13%  Similarity=0.240  Sum_probs=35.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhcc
Q 010679           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQEL-------AAAQHELQILHGQIGG   99 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqEL-------a~lqqEL~~L~~~L~~   99 (504)
                      +...||+++.....+++.+..+.+....++.++...+       .++++++.+++..+..
T Consensus       103 s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~  162 (1109)
T PRK10929        103 STDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQT  162 (1109)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhC
Confidence            3478889888888888888777776666664444444       5566666666655543

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=97.81  E-value=0.012  Score=58.48  Aligned_cols=15  Identities=13%  Similarity=-0.055  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQK   64 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~   64 (504)
                      ...+.+..++.+|+.
T Consensus        70 seq~~~~~a~~elq~   84 (330)
T KOG2991|consen   70 SEQDFKVMARDELQL   84 (330)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334555566666653

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=97.80  E-value=0.0087  Score=71.45  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAA   86 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~l   86 (504)
                      +.++..+..+++.+......+..++..+.+.+..+
T Consensus       529 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (1047)
T PRK10246        529 QSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRD  563 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555554444444444444443333333

>KOG0260 consensus RNA polymerase II, large subunit [Transcription]

Probab=97.80  E-value=0.00062  Score=78.81  Aligned_cols=6  Identities=67%  Similarity=1.486  Sum_probs=2.3

Q ss_pred             CCCCCC
Q 010679          449 APSYDP  454 (504)
Q Consensus       449 ~p~y~~  454 (504)
                      ||+|-|
T Consensus      1595 sp~ysp 1600 (1605)
T KOG0260|consen 1595 SPSYSP 1600 (1605)
T ss_pred             CCCCCC
Confidence            334433

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=97.80  E-value=0.0083  Score=66.21  Aligned_cols=26  Identities=15%  Similarity=0.310  Sum_probs=12.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           47 PPEVMEQKIASQHVEMQKLATENQRL   72 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~Le~e~qrL   72 (504)
                      .++.+.-+|..+.+|+..+..+++.+
T Consensus       110 e~a~lk~~l~e~~~El~~l~~~l~~l  135 (511)
T PF09787_consen  110 ELAVLKIRLQELDQELRRLRRQLEEL  135 (511)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455445555555555444444444

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PRK10869 recombination and repair protein; Provisional

Probab=97.79  E-value=0.0027  Score=70.64  Aligned_cols=25  Identities=4%  Similarity=0.060  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          198 YNDHLESLQVMEKNYITMATEVEKL  222 (504)
Q Consensus       198 ~~el~eqlqemek~L~sme~EiekL  222 (504)
                      +.++++++..+.+++..+..+|.+.
T Consensus       343 l~~Le~e~~~l~~~l~~~A~~LS~~  367 (553)
T PRK10869        343 LETLALAVEKHHQQALETAQKLHQS  367 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444333

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=97.79  E-value=0.016  Score=58.36  Aligned_cols=48  Identities=15%  Similarity=0.288  Sum_probs=20.3

Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           41 PFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQH   88 (504)
Q Consensus        41 ~~~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqq   88 (504)
                      |+.++-..+.+..+|......+......+..++.++..|..++..+..
T Consensus        19 ~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~   66 (264)
T PF06008_consen   19 PYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQE   66 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555544444433333333333333333333333333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=97.79  E-value=0.0014  Score=58.74  Aligned_cols=70  Identities=20%  Similarity=0.281  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 010679          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEK  195 (504)
Q Consensus       126 e~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~k  195 (504)
                      +.+.++|..+..|+..++.++..|..+++.+..+|-++..+...+.....++..|+.++++++..++..-
T Consensus        19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~L   88 (120)
T PF12325_consen   19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLL   88 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555555555555555555544444444555555555555555444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A

Probab=97.78  E-value=5.1e-06  Score=74.57  Aligned_cols=18  Identities=28%  Similarity=0.278  Sum_probs=0.0

Q ss_pred             CCCCC-CCCCCCCCCCCCC
Q 010679          433 GPGYD-LQRGQGYDMRRAP  450 (504)
Q Consensus       433 ~p~~~-~~~~~~~~~~~~p  450 (504)
                      +|++- ...++++..+.+|
T Consensus       103 TPg~~~~~~TPg~~~~~~p  121 (123)
T PF12815_consen  103 TPGAYNNAPTPGASAYSAP  121 (123)
T ss_dssp             -------------------
T ss_pred             ccccccccccccccccccc
Confidence            44443 2445554444444

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=97.78  E-value=0.0024  Score=75.77  Aligned_cols=16  Identities=13%  Similarity=0.318  Sum_probs=11.4

Q ss_pred             CCChHHHHHHHHHHHH
Q 010679           45 MPPPEVMEQKIASQHV   60 (504)
Q Consensus        45 ~p~~~~LEqeLe~~~e   60 (504)
                      +|..+.++++|+.+.+
T Consensus        22 ~p~~~~iq~~l~~~~~   37 (1109)
T PRK10929         22 APDEKQITQELEQAKA   37 (1109)
T ss_pred             CCCHHHHHHHHHHhhc
Confidence            5777788888886544

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.0035  Score=70.53  Aligned_cols=37  Identities=22%  Similarity=0.160  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (504)
Q Consensus        57 ~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L   93 (504)
                      .+.++|+.+.....-|..++...-+..+..+.++.+|
T Consensus       437 ~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL  473 (698)
T KOG0978|consen  437 ELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKL  473 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444443333333333333333333333333333

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=97.77  E-value=0.0089  Score=64.23  Aligned_cols=57  Identities=9%  Similarity=0.073  Sum_probs=34.2

Q ss_pred             CChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH
Q 010679           46 PPPEVMEQKIASQHVEMQK--LATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS  102 (504)
Q Consensus        46 p~~~~LEqeLe~~~eEIq~--Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a  102 (504)
                      +.|+....-++...+....  ++..+........-|+++|..++++|...+..+.+++.
T Consensus       141 ~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~  199 (444)
T TIGR03017       141 VDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQ  199 (444)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555554444444443322  22334555666677777888888888888877777543

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=97.77  E-value=0.012  Score=55.88  Aligned_cols=16  Identities=38%  Similarity=0.513  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          107 QMRNLTEKIAKMEAEL  122 (504)
Q Consensus       107 eL~eL~eki~kLEaEL  122 (504)
                      +...|.++|++-..+|
T Consensus        50 en~~l~~kIeERn~eL   65 (177)
T PF13870_consen   50 ENQQLNEKIEERNKEL   65 (177)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444443

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=97.77  E-value=0.0035  Score=69.14  Aligned_cols=32  Identities=28%  Similarity=0.233  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQ  158 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~  158 (504)
                      .++.|.+.++.+++.+..++.++..+++.++.
T Consensus       278 ~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~  309 (511)
T PF09787_consen  278 ELKQERDHLQEEIQLLERQIEQLRAELQDLEA  309 (511)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444333333

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.77  E-value=0.01  Score=69.90  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       196 k~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      .....+.+.+.++.+.+..+.+++++++.++.+
T Consensus       403 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~  435 (908)
T COG0419         403 AALEEIQEELEELEKELEELERELEELEEEIKK  435 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444444333

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=97.76  E-value=0.0069  Score=58.72  Aligned_cols=19  Identities=37%  Similarity=0.508  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHhhHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEK  195 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~k  195 (504)
                      +..|+.++++|+++|..++
T Consensus       133 ~~~l~~e~erL~aeL~~er  151 (202)
T PF06818_consen  133 LGSLRREVERLRAELQRER  151 (202)
T ss_pred             chhHHHHHHHHHHHHHHHH
Confidence            3344444444444444333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=97.74  E-value=0.0024  Score=63.88  Aligned_cols=28  Identities=21%  Similarity=0.299  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          198 YNDHLESLQVMEKNYITMATEVEKLRAE  225 (504)
Q Consensus       198 ~~el~eqlqemek~L~sme~EiekLraE  225 (504)
                      +++|.+.+..--+....++.|+..|+..
T Consensus       164 ~e~L~ekynkeveerkrle~e~k~lq~k  191 (307)
T PF10481_consen  164 YEELQEKYNKEVEERKRLEAEVKALQAK  191 (307)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence            3444444444334444555566666543

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PRK11281 hypothetical protein; Provisional

Probab=97.74  E-value=0.0093  Score=71.09  Aligned_cols=42  Identities=17%  Similarity=0.204  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL   90 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL   90 (504)
                      ..+|++|....++++..+.++..+..++..++...+.++.++
T Consensus       124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~l  165 (1113)
T PRK11281        124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAAL  165 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence            558888888888888777777777776666665444444333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=97.73  E-value=0.0017  Score=74.12  Aligned_cols=29  Identities=7%  Similarity=0.110  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          198 YNDHLESLQVMEKNYITMATEVEKLRAEL  226 (504)
Q Consensus       198 ~~el~eqlqemek~L~sme~EiekLraEL  226 (504)
                      ...+++-+.++.+++..+-++|+.+++.|
T Consensus       687 ~~~I~~iL~~~~~~I~~~v~~ik~i~~~~  715 (717)
T PF10168_consen  687 KRTIKEILKQQGEEIDELVKQIKNIKKIV  715 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34455555555666666666666666554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.70  E-value=0.004  Score=68.72  Aligned_cols=15  Identities=13%  Similarity=0.142  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679           62 MQKLATENQRLAATH   76 (504)
Q Consensus        62 Iq~Le~e~qrLe~qi   76 (504)
                      .+.+..+++++...-
T Consensus       166 w~~~~~~l~~~~~~~  180 (557)
T COG0497         166 WKQARRELEDLQEKE  180 (557)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=97.69  E-value=0.0061  Score=64.20  Aligned_cols=19  Identities=47%  Similarity=0.595  Sum_probs=10.8

Q ss_pred             CCCCCCCCCCCCCC-CCCCC
Q 010679          469 PHGQVPPPLNNVPY-GSATP  487 (504)
Q Consensus       469 ~~~~~~~~~~~~~~-~~~~~  487 (504)
                      -|-|++|.+-.|-| -+|||
T Consensus       524 ~~p~~~Psla~v~~~q~atp  543 (552)
T KOG2129|consen  524 SHPQVAPSLATVHPTQRATP  543 (552)
T ss_pred             cCcccCchhheecccccCCc
Confidence            37777776665544 44443

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=0.012  Score=62.64  Aligned_cols=34  Identities=15%  Similarity=0.186  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQ   87 (504)
Q Consensus        54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lq   87 (504)
                      +++...++...+.++.......+.+|+++-....
T Consensus       235 el~eq~eeneel~ae~kqh~v~~~ales~~sq~~  268 (521)
T KOG1937|consen  235 ELTEQNEENEELQAEYKQHLVEYKALESKRSQFE  268 (521)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4444444555555665555556666655444333

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.66  E-value=0.0095  Score=67.27  Aligned_cols=19  Identities=16%  Similarity=0.279  Sum_probs=13.7

Q ss_pred             ChHHHHHHHHHHHHHHHHH
Q 010679           47 PPEVMEQKIASQHVEMQKL   65 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~L   65 (504)
                      +-..|+.+|+.++++|-..
T Consensus       430 ~~~~Le~elekLk~eilKA  448 (762)
T PLN03229        430 PVRELEGEVEKLKEQILKA  448 (762)
T ss_pred             CCccHHHHHHHHHHHHHhc
Confidence            3466788888888877655

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=97.66  E-value=0.029  Score=67.04  Aligned_cols=38  Identities=13%  Similarity=0.093  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAA   86 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~l   86 (504)
                      ..+++++..+..++..+..++..+...+..+...+..+
T Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (1047)
T PRK10246        533 DALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSL  570 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666655555555544444444444444433333

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.66  E-value=0.025  Score=63.27  Aligned_cols=17  Identities=18%  Similarity=0.329  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQKLA   66 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le   66 (504)
                      ..+.+++..+.....|.
T Consensus        95 ~~~~~~dr~~~~~~~l~  111 (716)
T KOG4593|consen   95 NYEAEVDRKHKLLTRLR  111 (716)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44445554444444333

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=97.64  E-value=0.035  Score=57.08  Aligned_cols=61  Identities=18%  Similarity=0.150  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Q 010679          171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN-YITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       171 ~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~-L~sme~EiekLraELekle~  231 (504)
                      ..|...|..|..+...+..+++.+++.+.+++..+..-++. +..|-+.+.+|.++-..|+.
T Consensus       138 ~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~  199 (310)
T PF09755_consen  138 NKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQE  199 (310)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555544332222 23455666666665555443

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=97.64  E-value=0.024  Score=56.42  Aligned_cols=29  Identities=17%  Similarity=0.215  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679           67 TENQRLAATHGTLRQELAAAQHELQILHG   95 (504)
Q Consensus        67 ~e~qrLe~qi~~LkqELa~lqqEL~~L~~   95 (504)
                      .+...+...+...-.++..++.+|..++.
T Consensus        38 ~~~~~~~~~i~~aP~~~~~l~~~l~~l~~   66 (240)
T PF12795_consen   38 KRAAEYQKQIDQAPKEIRELQKELEALKS   66 (240)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence            33444444444444455555555555544

>PF13166 AAA_13: AAA domain

Probab=97.64  E-value=0.011  Score=67.22  Aligned_cols=52  Identities=12%  Similarity=0.172  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl  229 (504)
                      ..++.+++.+..+++..+..+..+..++.+++.++.....-++.+..+|..+
T Consensus       420 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~  471 (712)
T PF13166_consen  420 KELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL  471 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            3333344444444444444444455555555555554455555555666555

>TIGR00634 recN DNA repair protein RecN

Probab=97.64  E-value=0.0096  Score=66.40  Aligned_cols=41  Identities=12%  Similarity=0.029  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           59 HVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        59 ~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      ..+++.+..+.+++..++.+++.+....+++++.++.++++
T Consensus       160 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~E  200 (563)
T TIGR00634       160 VKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEE  200 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            33444444444455555555555555555555555555544

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.62  E-value=0.0066  Score=70.33  Aligned_cols=35  Identities=9%  Similarity=0.210  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq  161 (504)
                      ..+.+...++.+++++..++..+....+.++.+++
T Consensus       314 ~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~  348 (1141)
T KOG0018|consen  314 TAKKDYRALKETIERLEKELKAVEGAKEEFEKEIE  348 (1141)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444455555555555555555555544

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=97.61  E-value=0.01  Score=66.81  Aligned_cols=48  Identities=13%  Similarity=0.070  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE  225 (504)
Q Consensus       178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraE  225 (504)
                      ..++.|++++-..++.++-+++..+++-+-+.--|..-..||.+|+.-
T Consensus       497 ~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eL  544 (861)
T PF15254_consen  497 TRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLREL  544 (861)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHH
Confidence            334444444444444444444433333333333333334444444433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=97.60  E-value=0.00026  Score=68.31  Aligned_cols=13  Identities=46%  Similarity=0.774  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHH
Q 010679          110 NLTEKIAKMEAEL  122 (504)
Q Consensus       110 eL~eki~kLEaEL  122 (504)
                      .+..++.++..||
T Consensus        71 ~le~~~~~l~~EL   83 (194)
T PF08614_consen   71 SLEQKLAKLQEEL   83 (194)
T ss_dssp             -------------
T ss_pred             ccccccccccccc
Confidence            3334444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PLN03188 kinesin-12 family protein; Provisional

Probab=97.60  E-value=0.023  Score=67.34  Aligned_cols=64  Identities=22%  Similarity=0.212  Sum_probs=33.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q 010679          170 IPALLSELESLRQEYHHCRGTYEYEKKFYN--------------DHLESLQVME-------KNYITMATEVEKLRAELMN  228 (504)
Q Consensus       170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~--------------el~eqlqeme-------k~L~sme~EiekLraELek  228 (504)
                      +..|.+||.+|+.|.++-|.-+..+++.+.              +|.-++++.|       ++...+++|.+++.++|+|
T Consensus      1157 ~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~k 1236 (1320)
T PLN03188       1157 INALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDK 1236 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777665544433333322221              2222233332       3334466777778887888


Q ss_pred             ccccc
Q 010679          229 APNVD  233 (504)
Q Consensus       229 le~~~  233 (504)
                      |++.|
T Consensus      1237 lkrkh 1241 (1320)
T PLN03188       1237 LKRKH 1241 (1320)
T ss_pred             HHHHH
Confidence            77655

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.022  Score=60.80  Aligned_cols=9  Identities=0%  Similarity=0.029  Sum_probs=4.0

Q ss_pred             HHHHHHHHH
Q 010679           55 IASQHVEMQ   63 (504)
Q Consensus        55 Le~~~eEIq   63 (504)
                      |+.+.++.+
T Consensus       233 ~eel~eq~e  241 (521)
T KOG1937|consen  233 VEELTEQNE  241 (521)
T ss_pred             HHHHHhhhh
Confidence            444444443

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=97.59  E-value=0.078  Score=53.03  Aligned_cols=12  Identities=25%  Similarity=0.410  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHH
Q 010679          216 ATEVEKLRAELM  227 (504)
Q Consensus       216 e~EiekLraELe  227 (504)
                      ..||..++..|.
T Consensus       203 ~~Ei~~lk~~l~  214 (247)
T PF06705_consen  203 LEEIAALKNALA  214 (247)
T ss_pred             HHHHHHHHHHHH
Confidence            344444444443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=97.59  E-value=0.027  Score=64.70  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010679          203 ESLQVMEKNYITMATEVEKLRAE  225 (504)
Q Consensus       203 eqlqemek~L~sme~EiekLraE  225 (504)
                      +|..+--+++..++.|-.+|+.-
T Consensus       183 kqhle~vkkiakLEaEC~rLr~l  205 (769)
T PF05911_consen  183 KQHLESVKKIAKLEAECQRLRAL  205 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444445444444433

The function of this family is unknown.

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=97.58  E-value=0.019  Score=62.66  Aligned_cols=55  Identities=24%  Similarity=0.345  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      +..++..+...+.+|+.+|+..+..+   ++|+..|-+.|..|...|.+-+.+|+.++
T Consensus       460 l~eeL~~a~~~i~~LqDEL~TTr~NY---E~QLs~MSEHLasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  460 LEEELKEANQNISRLQDELETTRRNY---EEQLSMMSEHLASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455556666666666655554443   34677777777778888888888877765

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=0.032  Score=58.82  Aligned_cols=73  Identities=15%  Similarity=0.203  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT  124 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~e  124 (504)
                      +..-.++..+=+.|..++..+..+..+|+.-+...++++......|-......+..+..|+..|.+++.++.+
T Consensus       291 dt~w~~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~  363 (542)
T KOG0993|consen  291 DTLWFILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQK  363 (542)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445555555555555555555555554444443333222223344556666666666665543

>PRK10869 recombination and repair protein; Provisional

Probab=97.57  E-value=0.018  Score=64.13  Aligned_cols=24  Identities=8%  Similarity=-0.064  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          191 YEYEKKFYNDHLESLQVMEKNYIT  214 (504)
Q Consensus       191 Le~~kk~~~el~eqlqemek~L~s  214 (504)
                      ++.+++++.++.+++.++.++|..
T Consensus       343 l~~Le~e~~~l~~~l~~~A~~LS~  366 (553)
T PRK10869        343 LETLALAVEKHHQQALETAQKLHQ  366 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555554444443

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=97.57  E-value=0.01  Score=56.95  Aligned_cols=113  Identities=21%  Similarity=0.237  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010679           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG-QIGGM-KSERELQMRNLTEKIAKMEAELKTAEPVKLE  131 (504)
Q Consensus        54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~-~L~~l-~ae~E~eL~eL~eki~kLEaEL~ele~LkaE  131 (504)
                      +|.+..++.+....-+++|...+...++.+..+...+..-.. ..... ..........|.+.+.+|++|....+.|..-
T Consensus         3 rl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qv   82 (182)
T PF15035_consen    3 RLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQV   82 (182)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHH
Confidence            455555555555555566666666666555555555522100 00000 0000111234555566666665555554444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD  166 (504)
Q Consensus       132 LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~e  166 (504)
                      -.-|+.++++....-+.|...++.|+.++..+..+
T Consensus        83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~e  117 (182)
T PF15035_consen   83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDE  117 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555544443

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=97.57  E-value=0.043  Score=52.24  Aligned_cols=162  Identities=16%  Similarity=0.203  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK-------SERELQMRNLTEKIAKMEAELKTAE  126 (504)
Q Consensus        54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~-------ae~E~eL~eL~eki~kLEaEL~ele  126 (504)
                      -|..+.++|.+|+-+....+..+..|..+....+.-+......-....       .++..++.....+..-||.+     
T Consensus         5 ALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQ-----   79 (178)
T PF14073_consen    5 ALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQ-----   79 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHH-----
Confidence            466777888888888777777777776665554433332211111111       12222233333333333333     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq  206 (504)
                           |+-++.-+.....++..+..+-..|..+-.   .+...+..-...++.|..|+.+|...-.....++..|++++.
T Consensus        80 -----LeyMRkmv~~ae~er~~~le~q~~l~~e~~---~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~  151 (178)
T PF14073_consen   80 -----LEYMRKMVESAEKERNAVLEQQVSLQRERQ---QDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQ  151 (178)
T ss_pred             -----HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 333333333333233222222111111110   111122233344666667777776666666666667777766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 010679          207 VMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       207 emek~L~sme~EiekLraELek  228 (504)
                      +-+.+..-+...-.+|+..++.
T Consensus       152 eEehqRKlvQdkAaqLQt~lE~  173 (178)
T PF14073_consen  152 EEEHQRKLVQDKAAQLQTGLET  173 (178)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHH
Confidence            6655555555555566665553

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=97.56  E-value=0.03  Score=53.19  Aligned_cols=13  Identities=15%  Similarity=0.417  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHH
Q 010679          215 MATEVEKLRAELM  227 (504)
Q Consensus       215 me~EiekLraELe  227 (504)
                      ++++|..++..++
T Consensus       157 l~~~i~~l~rk~~  169 (177)
T PF13870_consen  157 LRKEIKELERKVE  169 (177)
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444444333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=97.56  E-value=0.0043  Score=55.62  Aligned_cols=83  Identities=18%  Similarity=0.221  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq  206 (504)
                      .+..|+..++.++..+..++..+..++-.|..+...++...+++..++.++++|+..++.+-.-+-.....+++|+..++
T Consensus        27 ~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~  106 (120)
T PF12325_consen   27 RLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQ  106 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            34444555555555555555556666666666665555555556666666666666666555554444444445544444


Q ss_pred             HHH
Q 010679          207 VME  209 (504)
Q Consensus       207 eme  209 (504)
                      ++.
T Consensus       107 DlK  109 (120)
T PF12325_consen  107 DLK  109 (120)
T ss_pred             HHH
Confidence            443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.004  Score=67.04  Aligned_cols=32  Identities=16%  Similarity=0.215  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLR   80 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lk   80 (504)
                      +.|.++|..+.+++......+..+.+++.+|+
T Consensus       337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq  368 (508)
T KOG3091|consen  337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQ  368 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788888887777766666666666666665

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.55  E-value=0.018  Score=61.00  Aligned_cols=16  Identities=19%  Similarity=0.189  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679           59 HVEMQKLATENQRLAA   74 (504)
Q Consensus        59 ~eEIq~Le~e~qrLe~   74 (504)
                      ..++..|+.+.+.|..
T Consensus       221 ~~kv~flerkv~eled  236 (502)
T KOG0982|consen  221 ERKVRFLERKVQELED  236 (502)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            3333444444333333

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.55  E-value=0.004  Score=70.19  Aligned_cols=12  Identities=17%  Similarity=0.429  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHh
Q 010679          217 TEVEKLRAELMN  228 (504)
Q Consensus       217 ~EiekLraELek  228 (504)
                      ..|+.|+.+|.+
T Consensus       695 ~kieal~~qik~  706 (762)
T PLN03229        695 EKIEALEQQIKQ  706 (762)
T ss_pred             HHHHHHHHHHHH
Confidence            556666666664

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=97.54  E-value=0.019  Score=56.96  Aligned_cols=47  Identities=23%  Similarity=0.272  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      .|++.|.....++..+.....++......++.++..++.+...++..
T Consensus        28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~   74 (225)
T COG1842          28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK   74 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444433

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=97.54  E-value=0.026  Score=59.19  Aligned_cols=54  Identities=13%  Similarity=0.180  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Q 010679          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI----TMATEVEKLRAELMN  228 (504)
Q Consensus       175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~----sme~EiekLraELek  228 (504)
                      .||.=|++|+..|+.+|+...+.+.....+.+++-.+|.    ....+|.+|+..|..
T Consensus       519 sEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLka  576 (593)
T KOG4807|consen  519 SEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKA  576 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence            345555555555555555554444444444444433332    234566666666644

>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A

Probab=97.53  E-value=1.9e-05  Score=70.89  Aligned_cols=6  Identities=17%  Similarity=0.772  Sum_probs=0.0

Q ss_pred             CCCCCC
Q 010679          352 KGPGYD  357 (504)
Q Consensus       352 ~~p~y~  357 (504)
                      |+|+|+
T Consensus        34 rTPa~~   39 (123)
T PF12815_consen   34 RTPAWG   39 (123)
T ss_dssp             ------
T ss_pred             cCcccc
Confidence            444443

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=97.53  E-value=0.007  Score=71.83  Aligned_cols=6  Identities=33%  Similarity=0.673  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 010679          177 LESLRQ  182 (504)
Q Consensus       177 IeaLrq  182 (504)
                      +..++.
T Consensus       887 ~~~l~e  892 (1294)
T KOG0962|consen  887 IEELSE  892 (1294)
T ss_pred             HHHHHH
Confidence            333333

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=97.53  E-value=0.025  Score=59.29  Aligned_cols=24  Identities=8%  Similarity=0.279  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRL   72 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrL   72 (504)
                      +.|+++|..++..+.....+...+
T Consensus       294 ~~L~k~vQ~L~AQle~~R~q~e~~  317 (593)
T KOG4807|consen  294 EALEKEVQALRAQLEAWRLQGEAP  317 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCc
Confidence            667788888777776655444433

>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]

Probab=97.53  E-value=0.0078  Score=67.74  Aligned_cols=30  Identities=17%  Similarity=0.381  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          131 EFQKSKTEAQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       131 ELeqLr~ELqeL~aerqeL~aqvq~L~~EL  160 (504)
                      +...++.+++++..+.+.+..++++|..+|
T Consensus      1003 ~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 1003 EMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555555555554

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=97.52  E-value=0.048  Score=59.43  Aligned_cols=123  Identities=16%  Similarity=0.206  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh--hhhHHHHHHHHHH
Q 010679          106 LQMRNLTEKIAKMEAELKTAE-PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH-TDVQ--QIPALLSELESLR  181 (504)
Q Consensus       106 ~eL~eL~eki~kLEaEL~ele-~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~-~elq--ql~~L~~EIeaLr  181 (504)
                      .++..+.+.+..++.++.+++ .+..+.+....++..+....++|..+.+.|-.+|=..+ ....  .-..+..-+.=++
T Consensus        67 ~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~  146 (475)
T PRK10361         67 NEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLR  146 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            344445555555555544443 33334444444555555555666666666655551111 1110  0112222244455


Q ss_pred             HHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          182 QEYHHCRGTYEYEK----KFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       182 qELq~LR~eLe~~k----k~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      +.|+..+..++...    +....|.++++.|.+.-..|..|-.+|..-|..
T Consensus       147 e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg  197 (475)
T PRK10361        147 EQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKG  197 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            55555555555432    344566666666666666667777777766644

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=97.51  E-value=0.0088  Score=64.51  Aligned_cols=83  Identities=14%  Similarity=0.157  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          141 NLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE  220 (504)
Q Consensus       141 eL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Eie  220 (504)
                      .+..++.++..++..+.++|+.+..++   .....++..|..+|.+++.++.++.-+++++.+.++.+...-..|..|++
T Consensus       202 ~~~KelrdtN~q~~s~~eel~~kt~el---~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~  278 (596)
T KOG4360|consen  202 DCVKELRDTNTQARSGQEELQSKTKEL---SRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELE  278 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            444445555555555555555544443   33455666677777777777777766677777777776666555555555


Q ss_pred             HHHHHH
Q 010679          221 KLRAEL  226 (504)
Q Consensus       221 kLraEL  226 (504)
                      .++.+-
T Consensus       279 EleDky  284 (596)
T KOG4360|consen  279 ELEDKY  284 (596)
T ss_pred             HHHHHH
Confidence            555443

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=97.51  E-value=0.0048  Score=67.76  Aligned_cols=45  Identities=7%  Similarity=0.104  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L   93 (504)
                      ..++++|..+....+.|.-+..-|.+++++..++|..++--|+..
T Consensus       107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~k  151 (861)
T KOG1899|consen  107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEK  151 (861)
T ss_pred             hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            344445544444444444444444444444444444444333333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=97.51  E-value=0.016  Score=52.63  Aligned_cols=16  Identities=25%  Similarity=0.362  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          128 VKLEFQKSKTEAQNLV  143 (504)
Q Consensus       128 LkaELeqLr~ELqeL~  143 (504)
                      ++.++..++.++..++
T Consensus        64 lr~e~~~~~~~~~~l~   79 (132)
T PF07926_consen   64 LREELQELQQEINELK   79 (132)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.027  Score=61.31  Aligned_cols=67  Identities=28%  Similarity=0.376  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 010679           59 HVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS----------ERELQMRNLTEKIAKMEAELKTA  125 (504)
Q Consensus        59 ~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a----------e~E~eL~eL~eki~kLEaEL~el  125 (504)
                      .++|+..+.++++|.+.+..|+.+|......+..++++...+.+          .++.-|..-.+++.+|+++|.+.
T Consensus       330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA  406 (654)
T KOG4809|consen  330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA  406 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777788888888888877777666666666665444332          34445566667777888877643

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=97.50  E-value=0.042  Score=59.88  Aligned_cols=52  Identities=10%  Similarity=0.150  Sum_probs=36.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~   98 (504)
                      .+..+|+.|+...+.|+.+...+..|..+-+....++..+....+.|+..+.
T Consensus       105 ~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl  156 (570)
T COG4477         105 EIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVL  156 (570)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3466778888888888887777777777776666666666666666655543

>PLN02939 transferase, transferring glycosyl groups

Probab=97.50  E-value=0.014  Score=68.21  Aligned_cols=21  Identities=24%  Similarity=0.237  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010679          141 NLVVAREELIAKVHQLTQDLQ  161 (504)
Q Consensus       141 eL~aerqeL~aqvq~L~~ELq  161 (504)
                      .+..++.-|.+.+.+|+..+.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~  281 (977)
T PLN02939        261 KLEKERSLLDASLRELESKFI  281 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444455555554443

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=97.49  E-value=0.019  Score=54.70  Aligned_cols=29  Identities=17%  Similarity=0.319  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHh-HHHHHHHHHHH
Q 010679          109 RNLTEKIAKMEAELKTAE-PVKLEFQKSKT  137 (504)
Q Consensus       109 ~eL~eki~kLEaEL~ele-~LkaELeqLr~  137 (504)
                      ..|....++|+.++..++ .++.|+..++.
T Consensus        76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a  105 (177)
T PF07798_consen   76 AELRSENEKLQREIEKLRQELREEINKLRA  105 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444433332 23344444443

>PLN02939 transferase, transferring glycosyl groups

Probab=97.49  E-value=0.018  Score=67.36  Aligned_cols=13  Identities=38%  Similarity=0.531  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHH
Q 010679          148 ELIAKVHQLTQDL  160 (504)
Q Consensus       148 eL~aqvq~L~~EL  160 (504)
                      +|..++++|+..|
T Consensus       328 ~~~~~~~~~~~~~  340 (977)
T PLN02939        328 DLRDKVDKLEASL  340 (977)
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444444333

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=97.49  E-value=0.0038  Score=71.70  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 010679           76 HGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        76 i~~LkqELa~lqqEL~~L~~~L   97 (504)
                      ++-|.++|..++++|...+..+
T Consensus       269 ~~fL~~qL~~l~~~L~~aE~~l  290 (726)
T PRK09841        269 LEFLQRQLPEVRSELDQAEEKL  290 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444433333

>PF13166 AAA_13: AAA domain

Probab=97.46  E-value=0.056  Score=61.62  Aligned_cols=10  Identities=10%  Similarity=0.298  Sum_probs=5.1

Q ss_pred             hHHHHHHHHH
Q 010679           48 PEVMEQKIAS   57 (504)
Q Consensus        48 ~~~LEqeLe~   57 (504)
                      ...+.++|+.
T Consensus       267 ~~~~~~~l~~  276 (712)
T PF13166_consen  267 SEERKERLEK  276 (712)
T ss_pred             cHHHHHHHHH
Confidence            3445556654

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.45  E-value=0.077  Score=59.31  Aligned_cols=11  Identities=36%  Similarity=0.347  Sum_probs=4.2

Q ss_pred             HHHHHHHHHHH
Q 010679           77 GTLRQELAAAQ   87 (504)
Q Consensus        77 ~~LkqELa~lq   87 (504)
                      +.|.++|..++
T Consensus       292 e~L~~eL~~~K  302 (786)
T PF05483_consen  292 EHLLQELEDIK  302 (786)
T ss_pred             HHHHHHHHHHH
Confidence            33333443333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]

Probab=97.44  E-value=0.099  Score=53.71  Aligned_cols=9  Identities=11%  Similarity=0.434  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 010679          177 LESLRQEYH  185 (504)
Q Consensus       177 IeaLrqELq  185 (504)
                      ++.+...+.
T Consensus       252 ~ekmtKk~k  260 (391)
T KOG1850|consen  252 MEKMTKKIK  260 (391)
T ss_pred             HHHHHHHHH
Confidence            333333333

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=97.42  E-value=0.019  Score=66.93  Aligned_cols=13  Identities=15%  Similarity=0.450  Sum_probs=7.9

Q ss_pred             CChHHHHHHHHHH
Q 010679           46 PPPEVMEQKIASQ   58 (504)
Q Consensus        46 p~~~~LEqeLe~~   58 (504)
                      |.+..||+.|.-+
T Consensus       369 Pa~~~lEETlSTL  381 (1041)
T KOG0243|consen  369 PAKHNLEETLSTL  381 (1041)
T ss_pred             CCcccHHHHHHHH
Confidence            5556667666544

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=97.42  E-value=0.0018  Score=62.45  Aligned_cols=29  Identities=31%  Similarity=0.342  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKLATENQRLAATHGTL   79 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~L   79 (504)
                      +++.+..+..|+..+...+..+..++..+
T Consensus        72 le~~~~~l~~ELael~r~~~el~~~L~~~  100 (194)
T PF08614_consen   72 LEQKLAKLQEELAELYRSKGELAQQLVEL  100 (194)
T ss_dssp             -----------------------------
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            33444444444444333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.41  E-value=3.4e-05  Score=89.64  Aligned_cols=31  Identities=35%  Similarity=0.340  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       130 aELeqLr~ELqeL~aerqeL~aqvq~L~~EL  160 (504)
                      .++..++.++.++...+..|..+...|..+|
T Consensus       412 te~~~Lk~~lee~~e~~e~lere~k~L~~El  442 (859)
T PF01576_consen  412 TELFKLKNELEELQEQLEELERENKQLQDEL  442 (859)
T ss_dssp             -------------------------------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            3333344444443333333333333443333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []

Probab=97.41  E-value=0.042  Score=62.65  Aligned_cols=16  Identities=31%  Similarity=0.627  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          108 MRNLTEKIAKMEAELK  123 (504)
Q Consensus       108 L~eL~eki~kLEaEL~  123 (504)
                      +..|.+.+.+|+.+++
T Consensus        93 ~~dl~e~vsqm~~~vK  108 (683)
T PF08580_consen   93 LFDLIEEVSQMELDVK  108 (683)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444443

KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].

>PRK11519 tyrosine kinase; Provisional

Probab=97.40  E-value=0.007  Score=69.44  Aligned_cols=24  Identities=21%  Similarity=0.174  Sum_probs=9.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHH
Q 010679          182 QEYHHCRGTYEYEKKFYNDHLESL  205 (504)
Q Consensus       182 qELq~LR~eLe~~kk~~~el~eql  205 (504)
                      .++.+|+.+.+..++.+..+.+++
T Consensus       370 ~~~~~L~Re~~~~~~lY~~lL~r~  393 (719)
T PRK11519        370 QEIVRLTRDVESGQQVYMQLLNKQ  393 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333343433333

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=97.40  E-value=0.003  Score=69.29  Aligned_cols=12  Identities=17%  Similarity=0.108  Sum_probs=6.0

Q ss_pred             HHHHHHHHHhcc
Q 010679          219 VEKLRAELMNAP  230 (504)
Q Consensus       219 iekLraELekle  230 (504)
                      +++|+.-|+.+.
T Consensus       276 d~~lk~a~eslm  287 (861)
T KOG1899|consen  276 DNTLKNALESLM  287 (861)
T ss_pred             HHHHHHHHHHHH
Confidence            345555555543

>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []

Probab=97.40  E-value=0.073  Score=50.72  Aligned_cols=16  Identities=25%  Similarity=0.536  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          107 QMRNLTEKIAKMEAEL  122 (504)
Q Consensus       107 eL~eL~eki~kLEaEL  122 (504)
                      +++.|.++..+.-.++
T Consensus        83 eir~LA~~t~~~~~~I   98 (213)
T PF00015_consen   83 EIRKLAEQTSESAKEI   98 (213)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhHHHHH
Confidence            4455554444444443

Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.

>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2

Probab=97.40  E-value=0.18  Score=50.41  Aligned_cols=89  Identities=12%  Similarity=0.160  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhh
Q 010679          106 LQMRNLTEKIAKMEAELKTA-----EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ---------QIP  171 (504)
Q Consensus       106 ~eL~eL~eki~kLEaEL~el-----e~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq---------ql~  171 (504)
                      .++.++.++|..+.++....     .....|.-.+-.-+..+-.+|..+-...+.+..+|++.+..+.         ++.
T Consensus        83 ~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~  162 (234)
T cd07664          83 SQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQ  162 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Confidence            34555555555554443322     2233344444444555555555555555556555554443322         233


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHH
Q 010679          172 ALLSELESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       172 ~L~~EIeaLrqELq~LR~eLe~~  194 (504)
                      .++.+|.+++.....++.+++..
T Consensus       163 ~~~~ev~~~e~~~~~a~~~fe~I  185 (234)
T cd07664         163 QAKDEIKEWEAKVQQGERDFEQI  185 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=97.40  E-value=0.063  Score=64.12  Aligned_cols=122  Identities=17%  Similarity=0.183  Sum_probs=55.7

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHH
Q 010679           43 DMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG------MKSERELQMRNLTEKIA  116 (504)
Q Consensus        43 ~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~------l~ae~E~eL~eL~eki~  116 (504)
                      -+|--|..|..++...-+......+ +..+..-+.+..+++...+..|..++...+.      ...+.+..+....+++.
T Consensus       162 WPLsEp~~LKkkfD~IF~~tky~KA-ld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~  240 (1294)
T KOG0962|consen  162 WPLSEPKNLKKKFDDIFSATKYTKA-LDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVS  240 (1294)
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888888766665443322 1222222222222333233333222222111      01123344444555555


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          117 KMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (504)
Q Consensus       117 kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~  165 (504)
                      +++.++..++....+|.....+++++..+...|..+...++.++..+..
T Consensus       241 e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~  289 (1294)
T KOG0962|consen  241 ELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLRE  289 (1294)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555555555444455555555555555555555555555555554443

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=97.39  E-value=0.066  Score=60.08  Aligned_cols=49  Identities=18%  Similarity=0.243  Sum_probs=30.9

Q ss_pred             HHHHHHHhhHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcc
Q 010679          182 QEYHHCRGTYEYEKKFYN-DHLESLQVME----KNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       182 qELq~LR~eLe~~kk~~~-el~eqlqeme----k~L~sme~EiekLraELekle  230 (504)
                      .+...+|.++...+..+. .+.+++.+++    ++|..|++.+...++|..|+.
T Consensus       556 eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaV  609 (739)
T PF07111_consen  556 EEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAV  609 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555554444 4444555544    456678899999999999986

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6

Probab=97.39  E-value=0.0053  Score=65.98  Aligned_cols=60  Identities=17%  Similarity=0.297  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 010679          136 KTEAQNLVVAREELIAKVHQLTQDLQR--AHTDVQQIPALLSELESLRQEYHHCRGTYEYEK  195 (504)
Q Consensus       136 r~ELqeL~aerqeL~aqvq~L~~ELq~--l~~elqql~~L~~EIeaLrqELq~LR~eLe~~k  195 (504)
                      ..+.+.|...+.+|+.-|+.|..++..  .+-...++..+..+|..+..+|..+..-|..++
T Consensus       212 ~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~k  273 (424)
T PF03915_consen  212 SEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEK  273 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            333444444445555555555544422  222344566777777777777777776666554

In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=97.39  E-value=0.041  Score=52.88  Aligned_cols=34  Identities=12%  Similarity=0.303  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (504)
Q Consensus       128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq  161 (504)
                      |+..+++.+...+.|..++..|..+...+..+|.
T Consensus        86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~  119 (182)
T PF15035_consen   86 LREQLEQARKANEALQEDLQKLTQDWERLRDELE  119 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444443

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.39  E-value=0.041  Score=61.73  Aligned_cols=45  Identities=9%  Similarity=0.064  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      ..+++.+++.++.++...+-+-..+...+.++..+++++..+.+.
T Consensus       615 ~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i  659 (1104)
T COG4913         615 DAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHI  659 (1104)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666666666666666666666665555443

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=97.39  E-value=0.047  Score=56.32  Aligned_cols=35  Identities=17%  Similarity=0.120  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (504)
Q Consensus       128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~  162 (504)
                      ++.|-..++.+|+.+..++.+.+.+.++|..||.+
T Consensus       139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE  173 (401)
T PF06785_consen  139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAE  173 (401)
T ss_pred             HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555543

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=97.39  E-value=0.038  Score=54.97  Aligned_cols=34  Identities=12%  Similarity=0.277  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010679           67 TENQRLAATHGTLRQELAAAQHELQILHGQIGGM  100 (504)
Q Consensus        67 ~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l  100 (504)
                      .+.++.......+++.|..+-.++..++.+|..+
T Consensus        31 ~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l   64 (240)
T PF12795_consen   31 DEIKKQKKRAAEYQKQIDQAPKEIRELQKELEAL   64 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            3456667777777777888888888888777665

>PRK10698 phage shock protein PspA; Provisional

Probab=97.37  E-value=0.056  Score=53.47  Aligned_cols=12  Identities=17%  Similarity=0.548  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHH
Q 010679          215 MATEVEKLRAEL  226 (504)
Q Consensus       215 me~EiekLraEL  226 (504)
                      ++.||..|++++
T Consensus       206 ve~ELa~LK~~~  217 (222)
T PRK10698        206 ISEQLAALKAKM  217 (222)
T ss_pred             HHHHHHHHHHHh
Confidence            445555555443

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.37  E-value=4.1e-05  Score=87.54  Aligned_cols=32  Identities=13%  Similarity=0.128  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccc
Q 010679          200 DHLESLQVMEKNYITM---ATEVEKLRAELMNAPN  231 (504)
Q Consensus       200 el~eqlqemek~L~sm---e~EiekLraELekle~  231 (504)
                      -++++...++.++..+   +.++..++-++..|+.
T Consensus       285 lLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~  319 (722)
T PF05557_consen  285 LLEEEKRSLQRKLERLEELEEELAELQLENEKLED  319 (722)
T ss_dssp             -----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445455444433   3445555545555443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=97.36  E-value=0.026  Score=52.15  Aligned_cols=55  Identities=13%  Similarity=0.294  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA  163 (504)
Q Consensus       109 ~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l  163 (504)
                      .-+.+-|...+.++...+.+..++..+..++..+...+..|+.++..++.++..+
T Consensus        38 n~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~   92 (151)
T PF11559_consen   38 NCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASA   92 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444455555555555555555555555555555555554433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.029  Score=61.07  Aligned_cols=15  Identities=27%  Similarity=0.293  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679          109 RNLTEKIAKMEAELK  123 (504)
Q Consensus       109 ~eL~eki~kLEaEL~  123 (504)
                      ..|...+.++..+|+
T Consensus       369 ssLas~glk~ds~Lk  383 (654)
T KOG4809|consen  369 SSLASAGLKRDSKLK  383 (654)
T ss_pred             HHHHHHhhhhhhhhh
Confidence            334444444444444

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=97.35  E-value=0.016  Score=65.40  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhc
Q 010679           77 GTLRQELAAAQHELQILHGQIG   98 (504)
Q Consensus        77 ~~LkqELa~lqqEL~~L~~~L~   98 (504)
                      ..|+.|.+.++++|+.|+.+|.
T Consensus       390 QplrsENaqLrRrLrilnqqlr  411 (861)
T PF15254_consen  390 QPLRSENAQLRRRLRILNQQLR  411 (861)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHH
Confidence            3444444455555555544443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=97.35  E-value=0.019  Score=60.60  Aligned_cols=13  Identities=0%  Similarity=-0.066  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVE   61 (504)
Q Consensus        49 ~~LEqeLe~~~eE   61 (504)
                      ..++.+++...-+
T Consensus       194 ~eWklEvERV~Pq  206 (359)
T PF10498_consen  194 AEWKLEVERVLPQ  206 (359)
T ss_pred             HHHHHHHHHHhhh
Confidence            4444444444333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

Probab=97.35  E-value=0.21  Score=50.06  Aligned_cols=143  Identities=10%  Similarity=0.146  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH-H
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQ---ELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-T  124 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lkq---ELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~-e  124 (504)
                      ..+.+.+..+.+.|..++.=.+|+......+..   ++...-..+..++..|..-+.....-+..+...+..+...+. .
T Consensus        54 ~e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~  133 (240)
T cd07667          54 AAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTED  133 (240)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            455556666666666555555555555544444   333333444444444433222222222222222222222221 1


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679          125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       125 le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~  194 (504)
                      ......++..--.-+..+...+.+.+.+.++|.+.+..   +.+++..|..+|++++.+.+...+++..+
T Consensus       134 yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l~~---rre~~~kLe~~ie~~~~~ve~f~~~~~~E  200 (240)
T cd07667         134 FLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAVAL---RKEERPKVPTDVEKCQDRVECFNADLKAD  200 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11112222222223333444444555555555555421   22334455556666666665555444433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=97.33  E-value=0.0038  Score=64.78  Aligned_cols=51  Identities=16%  Similarity=0.249  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCCCCC
Q 010679          191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN-VDRRAADGSYGG  243 (504)
Q Consensus       191 Le~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~-~~~~~~~~~yg~  243 (504)
                      ....+..+.++.++++.++.++..+..++++|++- .-+.. =+.|. ++.+|.
T Consensus       101 ~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt-Nv~n~~F~I~h-dG~fGT  152 (314)
T PF04111_consen  101 YNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT-NVYNDTFHIWH-DGPFGT  152 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT---TTTTT--EEE-ETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhceeeEee-cCCeee
Confidence            33334445555556666666666777777776653 22222 23444 445554

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=97.33  E-value=0.091  Score=59.00  Aligned_cols=34  Identities=24%  Similarity=0.221  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~EL  160 (504)
                      .|...++.|+.+-..|.....-|...++.|+.-|
T Consensus       246 ~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL  279 (739)
T PF07111_consen  246 ELLETVQHLQEDRDALQATAELLQVRVQSLTDIL  279 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555555555444

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.0094  Score=65.67  Aligned_cols=28  Identities=11%  Similarity=0.065  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLES  204 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eq  204 (504)
                      +..+..++..|+.+|+..++..++|+..
T Consensus       476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~  503 (652)
T COG2433         476 IRARDRRIERLEKELEEKKKRVEELERK  503 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444333333

>PF15294 Leu_zip: Leucine zipper

Probab=97.32  E-value=0.0058  Score=61.99  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        55 Le~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      ...+..||.+|..+|++|...+..++..-...-++...++.+|
T Consensus       127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L  169 (278)
T PF15294_consen  127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQL  169 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666677766676666666666555444444444444443

>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene

Probab=97.32  E-value=0.14  Score=47.64  Aligned_cols=19  Identities=11%  Similarity=0.265  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKLATEN   69 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le~e~   69 (504)
                      |++.+..+...+..+...+
T Consensus         3 l~~~~~~l~~~~~~l~~~l   21 (202)
T PF01442_consen    3 LDDRLDSLSSRTEELEERL   21 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4555555555555554433

This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....

>smart00806 AIP3 Actin interacting protein 3

Probab=97.30  E-value=0.089  Score=56.26  Aligned_cols=51  Identities=25%  Similarity=0.393  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh---------hhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679          144 VAREELIAKVHQLTQDLQRAHTDV---------QQIPALLSELESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       144 aerqeL~aqvq~L~~ELq~l~~el---------qql~~L~~EIeaLrqELq~LR~eLe~~  194 (504)
                      .+.+.|..+++.|+.-+..++.+.         .++..+..+|+.++.+|+.++.-|+.+
T Consensus       217 ~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~e  276 (426)
T smart00806      217 EDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIE  276 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344455555666655555555543         346667777777777777777665554

Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.

>PF14992 TMCO5: TMCO5 family

Probab=97.30  E-value=0.0085  Score=60.76  Aligned_cols=60  Identities=23%  Similarity=0.294  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHHHH
Q 010679           63 QKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG------MKSERELQMRNLTEKIAKMEAEL  122 (504)
Q Consensus        63 q~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~------l~ae~E~eL~eL~eki~kLEaEL  122 (504)
                      |+|...|+.+-..|.+.+..+..+..|+..+...+..      +..+.+..+++|..+.++||.+-
T Consensus        14 Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~n   79 (280)
T PF14992_consen   14 QRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKEN   79 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhh
Confidence            3444444444444444444444444444444333222      12234444555555555555443

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=97.29  E-value=0.063  Score=52.56  Aligned_cols=34  Identities=9%  Similarity=0.241  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679          135 SKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ  168 (504)
Q Consensus       135 Lr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq  168 (504)
                      .-..+..+...|..+..+.+.+..+|++.+.++.
T Consensus       119 ~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~  152 (236)
T PF09325_consen  119 YIESVKEALNRRDKKLIEYQNAEKELQKKKAQLE  152 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334445555555555666666666655554443

This is the C-terminal dimerisation domain [].

>TIGR02977 phageshock_pspA phage shock protein A

Probab=97.29  E-value=0.12  Score=50.75  Aligned_cols=20  Identities=15%  Similarity=0.202  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010679          141 NLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       141 eL~aerqeL~aqvq~L~~EL  160 (504)
                      .+...+.+|..++..|+.+|
T Consensus       110 ~~~~~v~~l~~~l~~L~~ki  129 (219)
T TIGR02977       110 AVEETLAKLQEDIAKLQAKL  129 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.016  Score=63.81  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          204 SLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       204 qlqemek~L~sme~EiekLraELekl  229 (504)
                      .+..++++|.....+++.|+++|+.+
T Consensus       482 ~I~~L~~~L~e~~~~ve~L~~~l~~l  507 (652)
T COG2433         482 RIERLEKELEEKKKRVEELERKLAEL  507 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444333

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=97.28  E-value=0.11  Score=48.77  Aligned_cols=9  Identities=44%  Similarity=0.564  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 010679          141 NLVVAREEL  149 (504)
Q Consensus       141 eL~aerqeL  149 (504)
                      .|+..+.+|
T Consensus       102 qLr~rRD~L  110 (159)
T PF05384_consen  102 QLRERRDEL  110 (159)
T ss_pred             HHHHHHHHH
Confidence            333333333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF14988 DUF4515: Domain of unknown function (DUF4515)

Probab=97.28  E-value=0.17  Score=49.60  Aligned_cols=29  Identities=14%  Similarity=0.158  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          196 KFYNDHLESLQVMEKNYITMATEVEKLRA  224 (504)
Q Consensus       196 k~~~el~eqlqemek~L~sme~EiekLra  224 (504)
                      +.+..+.++.+.++.....|+.....|..
T Consensus       170 k~L~~l~~e~~~L~~~~~~Le~qk~~L~~  198 (206)
T PF14988_consen  170 KELLQLIQEAQKLEARKSQLEKQKQQLQQ  198 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444333333333333333

>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells

Probab=97.27  E-value=0.25  Score=49.46  Aligned_cols=45  Identities=11%  Similarity=0.166  Sum_probs=27.4

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          187 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       187 LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      +...|+..+..+..|+.++..........-+.|+++..+|..-+.
T Consensus       182 ~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~R~  226 (239)
T PF05276_consen  182 FNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQRR  226 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455555666666666666666666666666777777665443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.27  E-value=6.3e-05  Score=87.48  Aligned_cols=59  Identities=22%  Similarity=0.302  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      +...|..++..|.++...++.......++..++..+++.+..|..+++.++..++.+..
T Consensus       572 ~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r  630 (859)
T PF01576_consen  572 AQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAER  630 (859)
T ss_dssp             -----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556666666666666666667777777777777777777777777777776654

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p

Probab=97.27  E-value=0.12  Score=50.77  Aligned_cols=64  Identities=19%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hHHHHHHHHHHHHHHHHHhhHHHH
Q 010679          131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI-----------PALLSELESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       131 ELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql-----------~~L~~EIeaLrqELq~LR~eLe~~  194 (504)
                      +...+-.-+..+..+|..+....+.+..+|.+++..+.++           ..+..+|..++...+.++.+++..
T Consensus        95 ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~i  169 (216)
T cd07627          95 EYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEV  169 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444445555556666666666666666555444433           344444444444444444444433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in

>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here

Probab=97.26  E-value=0.06  Score=50.23  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=15.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010679          170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHL  202 (504)
Q Consensus       170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~  202 (504)
                      +..+..+++.++.++......++.+......+.
T Consensus       141 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  173 (213)
T cd00176         141 VEELLKKHKELEEELEAHEPRLKSLNELAEELL  173 (213)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            344444455555555544444444444444333

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.25  E-value=0.1  Score=55.52  Aligned_cols=36  Identities=22%  Similarity=0.160  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~  162 (504)
                      .|+.-+++++.-+++.+..+.+|+.+...|...+..
T Consensus       245 KL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~  280 (446)
T KOG4438|consen  245 KLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTN  280 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence            344444444445555555555555555555544443

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=97.24  E-value=0.047  Score=56.59  Aligned_cols=20  Identities=30%  Similarity=0.366  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKK  196 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk  196 (504)
                      |+++..|.+.||.+++.+.+
T Consensus       247 i~EfdiEre~LRAel~ree~  266 (561)
T KOG1103|consen  247 IEEFDIEREFLRAELEREEK  266 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444333

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p

Probab=97.24  E-value=0.24  Score=48.62  Aligned_cols=13  Identities=8%  Similarity=0.033  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q 010679          134 KSKTEAQNLVVAR  146 (504)
Q Consensus       134 qLr~ELqeL~aer  146 (504)
                      .+..+|.+++.++
T Consensus       119 ~~~~~L~k~~~~~  131 (216)
T cd07627         119 SAESELSKKKAQL  131 (216)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=97.24  E-value=0.18  Score=53.04  Aligned_cols=28  Identities=18%  Similarity=0.220  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          200 DHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       200 el~eqlqemek~L~sme~EiekLraELe  227 (504)
                      .+.++...++++|+..++|+++++.+|+
T Consensus       353 aLrkerd~L~keLeekkreleql~~q~~  380 (442)
T PF06637_consen  353 ALRKERDSLAKELEEKKRELEQLKMQLA  380 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555555555543

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=97.23  E-value=0.0079  Score=63.59  Aligned_cols=53  Identities=11%  Similarity=0.218  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (504)
Q Consensus       109 ~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq  161 (504)
                      +..++.+.+|-.+|..++.++.+++.++..|.+.+.+-.....+...|+..+.
T Consensus       238 k~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~  290 (575)
T KOG4403|consen  238 KKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD  290 (575)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh
Confidence            33455566666666666666677777777766666665555555555554443

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=97.22  E-value=0.29  Score=49.19  Aligned_cols=90  Identities=13%  Similarity=0.178  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHH
Q 010679          131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE-SLQVME  209 (504)
Q Consensus       131 ELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~e-qlqeme  209 (504)
                      |...+-.-+..+..+|.+++.+++.+.+.+.+.+.+..   .+..+|+.++.+++.+.+.++.   .++..++ +.+++.
T Consensus       143 eyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~---~~~~ev~~~e~kve~a~~~~k~---e~~Rf~~~k~~D~k  216 (243)
T cd07666         143 EYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRD---LLKEEIEKLEDKVECANNALKA---DWERWKQNMQTDLR  216 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            33333444445555555666666666655555444432   3444555555555555444332   2222222 234455


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679          210 KNYITMATEVEKLRAEL  226 (504)
Q Consensus       210 k~L~sme~EiekLraEL  226 (504)
                      ..+..+.....++..++
T Consensus       217 ~~~~~yae~~i~~~~~~  233 (243)
T cd07666         217 SAFTDMAENNISYYEEC  233 (243)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555444444444444

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=97.20  E-value=0.077  Score=56.78  Aligned_cols=181  Identities=17%  Similarity=0.224  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHH---------------------HHHH------HHHHHHHHHHHHHHHHHHHHhhhccchHHHHH
Q 010679           54 KIASQHVEMQKLATENQ---------------------RLAA------THGTLRQELAAAQHELQILHGQIGGMKSEREL  106 (504)
Q Consensus        54 eLe~~~eEIq~Le~e~q---------------------rLe~------qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~  106 (504)
                      +-+++.+||+.|..+++                     .+..      .......+|+.-+.+-...+..-..+..++..
T Consensus       223 EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIsLteeLR~  302 (488)
T PF06548_consen  223 EKEVLLEEIQDLKSQLQYYTDSSMSTDRLRSSLLQRSYQLRPSAIPESGDENAEEELEQERQRWTEAESKWISLTEELRV  302 (488)
T ss_pred             hHHHHHHHHHHHHHHHHhccccccccccccccHHhhhhccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhhhHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------
Q 010679          107 QMRNLTEKIAKMEAELKTAEPVKLEFQ-----------KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ------  169 (504)
Q Consensus       107 eL~eL~eki~kLEaEL~ele~LkaELe-----------qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqq------  169 (504)
                      +|..-.....+++.||..-+....||+           .+-....+|+..-.+|......+..-|...+....+      
T Consensus       303 dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~  382 (488)
T PF06548_consen  303 DLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGA  382 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHhhHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          170 ----IPALLSELESLRQEYHHCRGTYEYEKKFYN---------------------DHLESLQVMEKNYITMATEVEKLRA  224 (504)
Q Consensus       170 ----l~~L~~EIeaLrqELq~LR~eLe~~kk~~~---------------------el~eqlqemek~L~sme~EiekLra  224 (504)
                          +..|-+||.+|+.|.++-|.-+..+++.+.                     +.++.....+++...+++|-+++..
T Consensus       383 ~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~k  462 (488)
T PF06548_consen  383 ESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKK  462 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHhcccccc
Q 010679          225 ELMNAPNVDR  234 (504)
Q Consensus       225 ELekle~~~~  234 (504)
                      ++++|++.|+
T Consensus       463 qiekLK~kh~  472 (488)
T PF06548_consen  463 QIEKLKRKHK  472 (488)
T ss_pred             HHHHHHHHHH

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=97.19  E-value=0.017  Score=66.32  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 010679           72 LAATHGTLRQELAAAQHELQILHG   95 (504)
Q Consensus        72 Le~qi~~LkqELa~lqqEL~~L~~   95 (504)
                      |.+++..++++|+.++.+|...+.
T Consensus       272 L~~qL~~l~~~L~~aE~~l~~fr~  295 (726)
T PRK09841        272 LQRQLPEVRSELDQAEEKLNVYRQ  295 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444333

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=97.18  E-value=0.022  Score=59.91  Aligned_cols=24  Identities=8%  Similarity=0.119  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          200 DHLESLQVMEKNYITMATEVEKLR  223 (504)
Q Consensus       200 el~eqlqemek~L~sme~EiekLr  223 (504)
                      +|+.+++..++.++.+...+++++
T Consensus       282 ~L~re~~~a~~~y~~~l~r~~~a~  305 (362)
T TIGR01010       282 RLVLQNELAQQQLKAALTSLQQTR  305 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444444

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=97.16  E-value=0.13  Score=53.96  Aligned_cols=58  Identities=12%  Similarity=0.127  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccc
Q 010679          179 SLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN-VDRRA  236 (504)
Q Consensus       179 aLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~-~~~~~  236 (504)
                      .++.++..++..++.+++.+++...+.+.++.+++.++..++....-+..|.. ..+|.
T Consensus       239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~  297 (344)
T PF12777_consen  239 EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS  297 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence            33333333333333333333333333333444444444444444444444433 44554

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=97.16  E-value=0.061  Score=51.25  Aligned_cols=14  Identities=36%  Similarity=0.551  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHhc
Q 010679          216 ATEVEKLRAELMNA  229 (504)
Q Consensus       216 e~EiekLraELekl  229 (504)
                      ..+|..|+.+++.+
T Consensus       137 ~~ei~~lr~~iE~~  150 (177)
T PF07798_consen  137 DTEIANLRTEIESL  150 (177)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44455555555553

>KOG3958 consensus Putative dynamitin [Cytoskeleton]

Probab=97.14  E-value=0.26  Score=50.34  Aligned_cols=48  Identities=13%  Similarity=0.137  Sum_probs=26.7

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcc
Q 010679          183 EYHHCRGTYEYEKKFYNDHLESLQV-MEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       183 ELq~LR~eLe~~kk~~~el~eqlqe-mek~L~sme~EiekLraELekle  230 (504)
                      +|+..+..|...-+...++.-+++. |.++|.+.+..+.++++.++++.
T Consensus       322 hl~t~q~~i~~sl~~n~ell~~vqtt~~qnl~tV~~k~a~ie~rva~l~  370 (371)
T KOG3958|consen  322 HLDTTQQMIANSLKDNTELLTQVQTTMRQNLATVEGKFASIEERVAKLG  370 (371)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444444444444444445444 56667777777777777766653

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=97.14  E-value=0.3  Score=52.10  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           55 IASQHVEMQKLATENQRLAATHGT   78 (504)
Q Consensus        55 Le~~~eEIq~Le~e~qrLe~qi~~   78 (504)
                      +.....||..|.....+|+..+..
T Consensus        66 l~~~~~Ei~~L~~~K~~le~aL~~   89 (384)
T PF03148_consen   66 LEELDEEIDLLEEEKRRLEKALEA   89 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=97.11  E-value=0.11  Score=56.59  Aligned_cols=38  Identities=18%  Similarity=0.253  Sum_probs=19.3

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010679           86 AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK  123 (504)
Q Consensus        86 lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~  123 (504)
                      +...|..|...+..+...++.+.+.|..+|..+..++.
T Consensus       356 l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~  393 (531)
T PF15450_consen  356 LMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWE  393 (531)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444455555566666665555444

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=97.11  E-value=0.15  Score=55.58  Aligned_cols=19  Identities=21%  Similarity=0.282  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHhhHHH
Q 010679          175 SELESLRQEYHHCRGTYEY  193 (504)
Q Consensus       175 ~EIeaLrqELq~LR~eLe~  193 (504)
                      .+|.++++||..+-..++.
T Consensus       455 ~eV~~vRqELa~lLssvQ~  473 (531)
T PF15450_consen  455 REVGAVRQELATLLSSVQL  473 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444555555444433333

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=97.11  E-value=0.1  Score=58.74  Aligned_cols=52  Identities=8%  Similarity=0.117  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      .++|.+.|..-|+...++.+.+.-.+.+++.+.+.+.++++....++..|-+
T Consensus      1061 RDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~ 1112 (1480)
T COG3096        1061 RDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVT 1112 (1480)
T ss_pred             HHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3444444444444444444555555555555555555555555555555443

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=97.08  E-value=0.19  Score=56.85  Aligned_cols=72  Identities=13%  Similarity=0.193  Sum_probs=31.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--h--HHHHHHHHHHHHHHHHHHH
Q 010679           46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM--K--SERELQMRNLTEKIAKMEA  120 (504)
Q Consensus        46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l--~--ae~E~eL~eL~eki~kLEa  120 (504)
                      |.|+..-.+|...+.+|   +..+...+.+-..++.+|..+++.+..|++-|-++  .  ..+...+.++.++++..++
T Consensus       832 ~dPE~~~~~~~~~Rnei---~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~a~e  907 (1480)
T COG3096         832 ADPEAEIRQLNSRRNEL---ERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQE  907 (1480)
T ss_pred             CCHHHHHHHHHHHHHHH---HHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHH
Confidence            45544333343333333   33333444444445555555555555555444331  1  1233445555555554443

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=97.08  E-value=0.49  Score=50.54  Aligned_cols=31  Identities=6%  Similarity=-0.031  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTL   79 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~L   79 (504)
                      ..|-.+++.+..=...|...++++.+++..|
T Consensus       119 ~eL~kE~~li~~~~~lL~~~l~~~~eQl~~l  149 (384)
T PF03148_consen  119 KELLKEVELIENIKRLLQRTLEQAEEQLRLL  149 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455544443333444444444444433

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=97.07  E-value=0.025  Score=56.81  Aligned_cols=18  Identities=17%  Similarity=0.422  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHhccc
Q 010679          214 TMATEVEKLRAELMNAPN  231 (504)
Q Consensus       214 sme~EiekLraELekle~  231 (504)
                      .+...|..|+.+|+.++.
T Consensus       186 ~lq~QL~~L~~EL~~~kd  203 (246)
T PF00769_consen  186 RLQEQLKELKSELEQLKD  203 (246)
T ss_dssp             HHHHHHHHHHHHHHTTB-
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            344455555555555553

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.07  E-value=0.027  Score=60.16  Aligned_cols=8  Identities=38%  Similarity=0.318  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010679          200 DHLESLQV  207 (504)
Q Consensus       200 el~eqlqe  207 (504)
                      +|++|+++
T Consensus       439 dLqEQlrD  446 (493)
T KOG0804|consen  439 DLQEQLRD  446 (493)
T ss_pred             HHHHHHHh
Confidence            33333333

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=97.06  E-value=0.094  Score=55.07  Aligned_cols=55  Identities=18%  Similarity=0.254  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl  229 (504)
                      .+++.++.+++.++..|+..+..+.++.+++..+.++++...++..+|+.+++.+
T Consensus       221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~  275 (344)
T PF12777_consen  221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEET  275 (344)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444544455555555555555555555555555555554443

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=97.05  E-value=0.017  Score=58.26  Aligned_cols=48  Identities=15%  Similarity=0.128  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA  224 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLra  224 (504)
                      |+++++||++|++-++..+..+.+..+-+|..-..++.-.+.++.|-.
T Consensus       119 LKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLq  166 (305)
T PF15290_consen  119 LKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQ  166 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHH
Confidence            555666666666666666666666655565555444444444444433

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=97.05  E-value=0.042  Score=62.54  Aligned_cols=52  Identities=19%  Similarity=0.197  Sum_probs=25.3

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccc
Q 010679          180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMA---TEVEKLRAELMNAPN  231 (504)
Q Consensus       180 LrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme---~EiekLraELekle~  231 (504)
                      ++.++..+..+++...+....+..++.+.+.++....   .+..+|..+|..|+.
T Consensus       260 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkG  314 (670)
T KOG0239|consen  260 LNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKG  314 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3333333334444444444444444444444444444   555566666666664

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=97.05  E-value=0.036  Score=56.13  Aligned_cols=58  Identities=12%  Similarity=0.168  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcc
Q 010679          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT-------MATEVEKLRAELMNAP  230 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~s-------me~EiekLraELekle  230 (504)
                      |...|+..+.||++.+..|+.+++-.-..+++...+|.+|+.       .-+.+.=|+.+|+...
T Consensus       195 Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~  259 (267)
T PF10234_consen  195 LEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYN  259 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            344566666666666666666654444444444444443333       3455555555555543

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30

Probab=97.04  E-value=0.35  Score=46.94  Aligned_cols=134  Identities=13%  Similarity=0.202  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH---
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT---  124 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~e---  124 (504)
                      -..+.+.|..+...|..++.-+++|.....+|-..+..+-..+..+...    ..++..-|..+-..++++...+..   
T Consensus        16 F~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~----E~~L~~~L~~~~~~~~~~~~~~~~l~~   91 (200)
T cd07624          16 FDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSAS----ETELAPLLEGVSSAVERCTAALEVLLS   91 (200)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667777777777777777777777776666666555544433333211    111222222222222222222211   


Q ss_pred             -----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhH
Q 010679          125 -----AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTY  191 (504)
Q Consensus       125 -----le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eL  191 (504)
                           +..-..|....-.-+..+...|.....+.+.+.+.|.+.+.+      +..+++.++.+++.+..++
T Consensus        92 ~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~------l~~ev~~a~~~~e~~~~~~  157 (200)
T cd07624          92 DHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLE------LLKEVEKLQDKLECANADL  157 (200)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence                 112223333344444444455555555555555555544433      4455555555555555444

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=97.04  E-value=0.12  Score=53.38  Aligned_cols=17  Identities=18%  Similarity=0.313  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHhccc
Q 010679          215 MATEVEKLRAELMNAPN  231 (504)
Q Consensus       215 me~EiekLraELekle~  231 (504)
                      |..|++++.-.+++.+.
T Consensus       246 l~selkkivf~~enie~  262 (401)
T PF06785_consen  246 LVSELKKIVFKVENIEA  262 (401)
T ss_pred             HHHHHHHHHHHHhhHHH
Confidence            44455555555555443

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=97.03  E-value=0.1  Score=49.03  Aligned_cols=20  Identities=5%  Similarity=0.204  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcc
Q 010679          211 NYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       211 ~L~sme~EiekLraELekle  230 (504)
                      .|.-+...+..+...|+.+.
T Consensus       134 vl~yL~~dl~~v~~~~e~~~  153 (159)
T PF05384_consen  134 VLNYLSGDLQQVSEQIEDAQ  153 (159)
T ss_pred             HHHHHHhhHHHHHHHHHHHH
Confidence            33344555555555555443

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=97.02  E-value=0.056  Score=57.99  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          204 SLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       204 qlqemek~L~sme~EiekLraELe  227 (504)
                      ++..++.++...+.++.+++.+++
T Consensus       228 ~~~~~~~~l~~~~~~l~~~~~~l~  251 (421)
T TIGR03794       228 ELETVEARIKEARYEIEELENKLN  251 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455566666677777777777775

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.02  E-value=0.079  Score=56.61  Aligned_cols=22  Identities=5%  Similarity=0.018  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010679          139 AQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       139 LqeL~aerqeL~aqvq~L~~EL  160 (504)
                      ++.++.++..|..+++.++.++
T Consensus       325 ~~~~q~q~~~Lrs~~~d~EAq~  346 (554)
T KOG4677|consen  325 SAHIQDQYTLLRSQIIDIEAQD  346 (554)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444333

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=97.01  E-value=0.028  Score=55.43  Aligned_cols=32  Identities=13%  Similarity=0.208  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          197 FYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       197 ~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      ...++..+.-+++.....|+.||.+++++..+
T Consensus       183 ~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~  214 (221)
T PF05700_consen  183 RWKELVSKNLEIEVACEELEQEIEQLKRKAAE  214 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444555555544444

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=97.01  E-value=0.043  Score=57.99  Aligned_cols=17  Identities=18%  Similarity=0.427  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHhc
Q 010679          213 ITMATEVEKLRAELMNA  229 (504)
Q Consensus       213 ~sme~EiekLraELekl  229 (504)
                      ..+.+.|.+|+.|+..+
T Consensus       331 v~IKqAl~kLk~EI~qM  347 (359)
T PF10498_consen  331 VKIKQALTKLKQEIKQM  347 (359)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            34555555666665554

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=97.01  E-value=0.051  Score=50.20  Aligned_cols=7  Identities=14%  Similarity=0.273  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 010679           76 HGTLRQE   82 (504)
Q Consensus        76 i~~LkqE   82 (504)
                      .+.|..+
T Consensus        54 ~e~l~~~   60 (151)
T PF11559_consen   54 REDLSDK   60 (151)
T ss_pred             HHHHHHH
Confidence            3333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=97.01  E-value=0.076  Score=54.85  Aligned_cols=52  Identities=13%  Similarity=0.194  Sum_probs=29.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      ...|..+|....++.++....+.+|..+...|.-++..+++.|..++..+.+
T Consensus        79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~  130 (302)
T PF09738_consen   79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQ  130 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666555555555555555555555555555555554443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.01  E-value=0.28  Score=51.97  Aligned_cols=31  Identities=26%  Similarity=0.259  Sum_probs=14.3

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 010679           86 AQHELQILHGQIGGMKSERELQMRNLTEKIA  116 (504)
Q Consensus        86 lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~  116 (504)
                      ....+..+...|..++.+.+.++..|.....
T Consensus       343 sE~ll~tlq~~iSqaq~~vq~qma~lv~a~e  373 (542)
T KOG0993|consen  343 SEDLLVTLQAEISQAQSEVQKQMARLVVASE  373 (542)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555555544444444444444333

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.01  E-value=0.079  Score=59.73  Aligned_cols=57  Identities=18%  Similarity=0.329  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----------hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          104 RELQMRNLTEKIAKMEAELKTA-----------EPV-KLEFQKSKTEAQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       104 ~E~eL~eL~eki~kLEaEL~el-----------e~L-kaELeqLr~ELqeL~aerqeL~aqvq~L~~EL  160 (504)
                      ...++.++..+|+++-.+|..-           ..+ ..++++++.+|.+|+.++..=..++..+..+|
T Consensus       122 R~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I  190 (660)
T KOG4302|consen  122 RRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEI  190 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666421           011 13455555555555554444333444444333

>PRK11519 tyrosine kinase; Provisional

Probab=97.00  E-value=0.045  Score=62.88  Aligned_cols=40  Identities=15%  Similarity=0.233  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679          155 QLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       155 ~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~  194 (504)
                      .|+.++..++.+...++..+.++..|+.+.+-.++-++.+
T Consensus       350 ~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~l  389 (719)
T PRK11519        350 ALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQL  389 (719)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333344444444444444433333

>KOG2196 consensus Nuclear porin [Nuclear structure]

Probab=97.00  E-value=0.12  Score=51.21  Aligned_cols=51  Identities=12%  Similarity=0.118  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      ..||+-|..-..||..-+.--.....++.++.+.|-.....|..|..++.+
T Consensus        74 ~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~  124 (254)
T KOG2196|consen   74 KTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVK  124 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHH
Confidence            556777776666666555555555666666666666555555555554433

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=96.99  E-value=0.051  Score=54.56  Aligned_cols=20  Identities=15%  Similarity=0.302  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 010679          209 EKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       209 ek~L~sme~EiekLraELek  228 (504)
                      ...+..+...+.+...+|..
T Consensus       109 q~el~~ar~~~~~ak~~L~~  128 (246)
T PF00769_consen  109 QEELEEAREDEEEAKEELLE  128 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444433

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=96.99  E-value=0.22  Score=47.56  Aligned_cols=56  Identities=20%  Similarity=0.341  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679          139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQ-----------QIPALLSELESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       139 LqeL~aerqeL~aqvq~L~~ELq~l~~elq-----------ql~~L~~EIeaLrqELq~LR~eLe~~  194 (504)
                      +.++...+..+..+++.+...+.+.+.++.           ++..+..+|..++.+++.++..++..
T Consensus       105 ~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i  171 (218)
T cd07596         105 VKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI  171 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444445555555544444333           33344444444444444444444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B

Probab=96.98  E-value=0.3  Score=49.62  Aligned_cols=26  Identities=15%  Similarity=0.057  Sum_probs=13.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679          169 QIPALLSELESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       169 ql~~L~~EIeaLrqELq~LR~eLe~~  194 (504)
                      +|..|++||..+..+....+.+|...
T Consensus       166 kl~~LeqELvraEae~lvaEAqL~n~  191 (271)
T PF13805_consen  166 KLVVLEQELVRAEAENLVAEAQLSNI  191 (271)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            45555555555555554444444443

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=96.96  E-value=0.035  Score=63.09  Aligned_cols=48  Identities=15%  Similarity=0.236  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE  220 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Eie  220 (504)
                      |+.++..|++++.+++.++..+.+.+++....+..+...|.+++.++.
T Consensus       246 l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~  293 (670)
T KOG0239|consen  246 LQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV  293 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444444443

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=96.95  E-value=0.14  Score=59.98  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 010679           72 LAATHGTLRQELAAAQHELQILHG   95 (504)
Q Consensus        72 Le~qi~~LkqELa~lqqEL~~L~~   95 (504)
                      ...++++++.+|+.+..+|..+..
T Consensus       446 ~~~~ieele~el~~~~~~l~~~~e  469 (1041)
T KOG0243|consen  446 MAEQIEELEEELENLEKQLKDLTE  469 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444433

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=96.94  E-value=0.047  Score=56.41  Aligned_cols=58  Identities=19%  Similarity=0.194  Sum_probs=44.2

Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           42 FDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        42 ~~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      .+|......+|++.....-.-..|.++...|.-+++-|+.+|..+++.+..++.++.+
T Consensus        80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e  137 (302)
T PF09738_consen   80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE  137 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3666777888888887777777777787888888888888887777777777777644

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]

Probab=96.93  E-value=0.63  Score=48.01  Aligned_cols=46  Identities=11%  Similarity=0.199  Sum_probs=26.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       186 ~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      .|..++......++++..-+....+-......|+++|...+.++++
T Consensus       219 qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEK  264 (391)
T KOG1850|consen  219 QLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEK  264 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555555555555555555666677777666666665

>PF15294 Leu_zip: Leucine zipper

Probab=96.91  E-value=0.033  Score=56.61  Aligned_cols=10  Identities=20%  Similarity=0.322  Sum_probs=5.0

Q ss_pred             HHHHHHHHHH
Q 010679           71 RLAATHGTLR   80 (504)
Q Consensus        71 rLe~qi~~Lk   80 (504)
                      +|..++.+|.
T Consensus        78 kl~~diselE   87 (278)
T PF15294_consen   78 KLQTDISELE   87 (278)
T ss_pred             HhcccHHHHH
Confidence            4555555543

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.89  E-value=0.03  Score=55.69  Aligned_cols=19  Identities=5%  Similarity=0.174  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHhhHHH
Q 010679          175 SELESLRQEYHHCRGTYEY  193 (504)
Q Consensus       175 ~EIeaLrqELq~LR~eLe~  193 (504)
                      ++|..|...+.+++.+.+.
T Consensus        60 ~DIn~lE~iIkqa~~er~~   78 (230)
T PF10146_consen   60 QDINTLENIIKQAESERNK   78 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=96.89  E-value=0.1  Score=56.04  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhccc
Q 010679          210 KNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       210 k~L~sme~EiekLraELekle~  231 (504)
                      .++..++.++..++++++.++.
T Consensus       227 ~~~~~~~~~l~~~~~~l~~~~~  248 (421)
T TIGR03794       227 KELETVEARIKEARYEIEELEN  248 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666666554

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>KOG0992 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.89  E-value=0.3  Score=52.97  Aligned_cols=17  Identities=24%  Similarity=0.270  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHhccc
Q 010679          215 MATEVEKLRAELMNAPN  231 (504)
Q Consensus       215 me~EiekLraELekle~  231 (504)
                      ...-|..|..|++..+.
T Consensus       401 ~a~tikeL~~El~~yrr  417 (613)
T KOG0992|consen  401 HAETIKELEIELEEYRR  417 (613)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34556666666666443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=96.88  E-value=0.013  Score=57.36  Aligned_cols=11  Identities=9%  Similarity=-0.200  Sum_probs=3.9

Q ss_pred             HHHHHHHHHHH
Q 010679          136 KTEAQNLVVAR  146 (504)
Q Consensus       136 r~ELqeL~aer  146 (504)
                      +.+++.++.++
T Consensus       145 ~~~l~~~~~~~  155 (206)
T PRK10884        145 KNQLIVAQKKV  155 (206)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=96.88  E-value=0.16  Score=51.57  Aligned_cols=65  Identities=22%  Similarity=0.325  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~  194 (504)
                      .+..++++.+..+..+..+...|..+++..+.||++.+++++.|   +.--.+...|.++++.+|+.+
T Consensus       173 ~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL---q~vRPAfmdEyEklE~EL~~l  237 (267)
T PF10234_consen  173 AVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL---QSVRPAFMDEYEKLEEELQKL  237 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcChHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555555555555555544333   333344555666666555433

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

Probab=96.86  E-value=0.68  Score=50.41  Aligned_cols=41  Identities=17%  Similarity=0.134  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010679          196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA  236 (504)
Q Consensus       196 k~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~~  236 (504)
                      +....+.+++..+...+..|.+++..|.+-|..-..+-.|.
T Consensus       157 ~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wG  197 (448)
T COG1322         157 EERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWG  197 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHH
Confidence            44555666777777777888888888888888754466563

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.15  Score=49.08  Aligned_cols=18  Identities=11%  Similarity=0.263  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010679          206 QVMEKNYITMATEVEKLR  223 (504)
Q Consensus       206 qemek~L~sme~EiekLr  223 (504)
                      .+++.+|..+..|..-+.
T Consensus       161 ~dL~aELdaL~~E~d~~~  178 (218)
T KOG1655|consen  161 ADLDAELDALGQELDMLE  178 (218)
T ss_pred             HHHHHHHHHHHhHhhccc
Confidence            445566666666655443

>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=96.85  E-value=0.15  Score=53.40  Aligned_cols=52  Identities=19%  Similarity=0.227  Sum_probs=35.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      +..+..++...++.++.+..+.+++.++.....+||+..+.-++.+.+.++-
T Consensus       134 ~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tiki  185 (464)
T KOG4637|consen  134 INAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKI  185 (464)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3555666666777777777777777777777777777666666666555544

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=96.84  E-value=0.08  Score=57.54  Aligned_cols=22  Identities=5%  Similarity=0.280  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQKLATENQR   71 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qr   71 (504)
                      .+..+|..+..+++..+..++.
T Consensus       199 ~l~~~l~~lr~~~~~ae~~~~~  220 (458)
T COG3206         199 SLDERLEELRARLQEAEAQVED  220 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555544443

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.84  E-value=0.13  Score=56.96  Aligned_cols=31  Identities=10%  Similarity=0.074  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTL   79 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~L   79 (504)
                      ..++++|....++.+.+..+.+.|.-++++|
T Consensus       167 ~~~~~~l~~~~~~~~e~~~~~d~L~fq~~El  197 (557)
T COG0497         167 KQARRELEDLQEKERERAQRADLLQFQLEEL  197 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777777776666666666666655544

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=96.84  E-value=0.086  Score=54.31  Aligned_cols=24  Identities=13%  Similarity=0.079  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          206 QVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       206 qemek~L~sme~EiekLraELekl  229 (504)
                      ...+.++..++.+++.++..++++
T Consensus       182 ~~~~~~~~~~~~~l~~a~~~l~~~  205 (327)
T TIGR02971       182 DLAQAEVKSALEAVQQAEALLELT  205 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            344455555566666666666554

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=96.83  E-value=0.48  Score=45.21  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010679           53 QKIASQHVEMQKLATENQRLAA   74 (504)
Q Consensus        53 qeLe~~~eEIq~Le~e~qrLe~   74 (504)
                      +.|..+...+..+.....++..
T Consensus        11 ~~v~~le~~l~~l~~~~~~~~k   32 (218)
T cd07596          11 DYILKLEEQLKKLSKQAQRLVK   32 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.83  E-value=0.18  Score=50.87  Aligned_cols=18  Identities=6%  Similarity=0.097  Sum_probs=8.7

Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 010679           48 PEVMEQKIASQHVEMQKL   65 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~L   65 (504)
                      +..+..+.++++.++...
T Consensus        11 iae~k~e~sAlhqK~~aK   28 (389)
T KOG4687|consen   11 IAELKKEFSALHQKCGAK   28 (389)
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            344555555555544433

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=96.83  E-value=0.082  Score=56.53  Aligned_cols=14  Identities=7%  Similarity=0.114  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHH
Q 010679          200 DHLESLQVMEKNYI  213 (504)
Q Consensus       200 el~eqlqemek~L~  213 (504)
                      ...+++++++++|.
T Consensus       432 s~d~~I~dLqEQlr  445 (493)
T KOG0804|consen  432 SKDEKITDLQEQLR  445 (493)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444443

>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2

Probab=96.82  E-value=0.59  Score=46.14  Aligned_cols=62  Identities=8%  Similarity=0.095  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 010679          134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ---------QIPALLSELESLRQEYHHCRGTYEYEK  195 (504)
Q Consensus       134 qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq---------ql~~L~~EIeaLrqELq~LR~eLe~~k  195 (504)
                      .+-.-+..+-.+|..+-...+.+..+|.+.+..+.         ++..+..+|.+++...+.++.+++...
T Consensus       106 r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is  176 (224)
T cd07623         106 GLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEIS  176 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444555555555555555554444322         244445555555555555555544443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=96.81  E-value=0.041  Score=57.39  Aligned_cols=21  Identities=5%  Similarity=0.006  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcc
Q 010679          210 KNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       210 k~L~sme~EiekLraELekle  230 (504)
                      .++..++.+++..+..|+.+.
T Consensus       190 a~~~~~~a~l~~a~~~l~~~~  210 (346)
T PRK10476        190 AQRAAREAALAIAELHLEDTT  210 (346)
T ss_pred             HHHHHHHHHHHHHHHHhhcCE
Confidence            334445555666666666544

>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]

Probab=96.81  E-value=0.77  Score=48.97  Aligned_cols=41  Identities=10%  Similarity=0.038  Sum_probs=23.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          189 GTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       189 ~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl  229 (504)
                      .++..++..+..|++++.+.+..+..+..-..+|+.+|+..
T Consensus       351 ~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k  391 (421)
T KOG2685|consen  351 DEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIK  391 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444455555556666666666666666666666666553

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=96.81  E-value=0.13  Score=47.48  Aligned_cols=42  Identities=14%  Similarity=0.242  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010679           82 ELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK  123 (504)
Q Consensus        82 ELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~  123 (504)
                      .++....+|..+..+|..+..-..+++..+..+|+....+|+
T Consensus        60 rveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLk  101 (159)
T PF04949_consen   60 RVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELK  101 (159)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhh
Confidence            333444444444444444333344455555555555555544

This entry represents proteins annotated as RAB6-interacting golgins.

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria

Probab=96.79  E-value=0.2  Score=58.41  Aligned_cols=17  Identities=29%  Similarity=0.292  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679           75 THGTLRQELAAAQHELQ   91 (504)
Q Consensus        75 qi~~LkqELa~lqqEL~   91 (504)
                      .+..|++||..++.|..
T Consensus      1132 ~lnnlqqElklLRnEK~ 1148 (1439)
T PF12252_consen 1132 NLNNLQQELKLLRNEKI 1148 (1439)
T ss_pred             HHHHHHHHHHHHHhHHH
Confidence            33333344433333333

There is little literature describing the family.

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=96.79  E-value=0.089  Score=54.19  Aligned_cols=20  Identities=15%  Similarity=0.069  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcc
Q 010679          211 NYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       211 ~L~sme~EiekLraELekle  230 (504)
                      ++...+.+++.++++++.++
T Consensus       180 ~~~~~~~~~~~~~~~l~~a~  199 (327)
T TIGR02971       180 DVDLAQAEVKSALEAVQQAE  199 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555543

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=96.79  E-value=0.17  Score=55.07  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010679           70 QRLAATHGTLRQELAAAQHELQI   92 (504)
Q Consensus        70 qrLe~qi~~LkqELa~lqqEL~~   92 (504)
                      .-+..++.+++.++...+.+++.
T Consensus       198 ~~l~~~l~~lr~~~~~ae~~~~~  220 (458)
T COG3206         198 DSLDERLEELRARLQEAEAQVED  220 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555444443333

>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]

Probab=96.78  E-value=0.41  Score=49.26  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccc
Q 010679          208 MEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       208 mek~L~sme~EiekLraELekle~  231 (504)
                      +-..|+...+-+.-|++||....+
T Consensus       188 ~t~~le~qk~tv~~Leaev~~~K~  211 (426)
T KOG2008|consen  188 YTVQLEQQKKTVDDLEAEVTLAKG  211 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334445555556666666655443

>PF14992 TMCO5: TMCO5 family

Probab=96.77  E-value=0.028  Score=57.13  Aligned_cols=36  Identities=25%  Similarity=0.375  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           64 KLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        64 ~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      .++.+.++|.+....+-+++......+.+|..+|..
T Consensus         8 dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~   43 (280)
T PF14992_consen    8 DLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITK   43 (280)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666777777777777777777777777776655

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=96.76  E-value=0.1  Score=55.74  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Q 010679          208 MEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       208 mek~L~sme~EiekLraELekl  229 (504)
                      |.++++.+...++.|+..|++|
T Consensus       366 ~~~N~~~i~~n~~~le~Ri~~L  387 (388)
T PF04912_consen  366 FKENMETIEKNVKKLEERIAKL  387 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc
Confidence            6666777788888888877765

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PLN03188 kinesin-12 family protein; Provisional

Probab=96.76  E-value=0.44  Score=57.00  Aligned_cols=16  Identities=6%  Similarity=0.034  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679           53 QKIASQHVEMQKLATE   68 (504)
Q Consensus        53 qeLe~~~eEIq~Le~e   68 (504)
                      .++++..++++-++.+
T Consensus      1045 ~e~~l~~er~~w~e~e 1060 (1320)
T PLN03188       1045 PEKKLEQERLRWTEAE 1060 (1320)
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            3444455555544443

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=96.75  E-value=0.63  Score=45.48  Aligned_cols=26  Identities=12%  Similarity=0.247  Sum_probs=12.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679          169 QIPALLSELESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       169 ql~~L~~EIeaLrqELq~LR~eLe~~  194 (504)
                      ++..+..+|++++..++.++.+++..
T Consensus       164 k~~~~~~ei~~~~~~~~~~~~~~~~i  189 (236)
T PF09325_consen  164 KVEQAENEIEEAERRVEQAKDEFEEI  189 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555444444

This is the C-terminal dimerisation domain [].

>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.4  Score=52.77  Aligned_cols=26  Identities=12%  Similarity=0.307  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHG   77 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~   77 (504)
                      .+++..+.+.|+.|+..+.+|...+.
T Consensus       273 ~~~f~e~~~~i~~l~~~l~~l~~~~~  298 (503)
T KOG2273|consen  273 DKEFTEKKEKIDKLEQQLKKLSKQVQ  298 (503)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555544444433

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.74  E-value=0.18  Score=50.56  Aligned_cols=6  Identities=17%  Similarity=0.373  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 010679          221 KLRAEL  226 (504)
Q Consensus       221 kLraEL  226 (504)
                      -+..|+
T Consensus       157 a~~~E~  162 (251)
T PF11932_consen  157 AYQIEM  162 (251)
T ss_pred             HHHHHH
Confidence            333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria

Probab=96.73  E-value=0.058  Score=62.61  Aligned_cols=14  Identities=36%  Similarity=0.589  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHhh
Q 010679           83 LAAAQHELQILHGQ   96 (504)
Q Consensus        83 La~lqqEL~~L~~~   96 (504)
                      |..+++||.-|+.+
T Consensus      1133 lnnlqqElklLRnE 1146 (1439)
T PF12252_consen 1133 LNNLQQELKLLRNE 1146 (1439)
T ss_pred             HHHHHHHHHHHHhH
Confidence            33444444444443

There is little literature describing the family.

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=96.72  E-value=0.6  Score=46.29  Aligned_cols=28  Identities=21%  Similarity=0.235  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTL   79 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~L   79 (504)
                      ..++...+..+..++.+..+....+..+
T Consensus        24 ~~~i~si~~n~s~~e~~i~qi~~~h~d~   51 (280)
T COG5074          24 MNKILSINKNLSVYEKEINQIDNLHKDL   51 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555554444444443

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=96.71  E-value=0.79  Score=46.06  Aligned_cols=28  Identities=14%  Similarity=0.194  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATH   76 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi   76 (504)
                      ..+.+.+..+...|..++.-.+|+....
T Consensus        57 ~Emkey~d~L~~~L~~ieki~~Rl~kr~   84 (243)
T cd07666          57 TEMNEYVEAFSQKINVLDKISQRIYKEQ   84 (243)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence            3444445555555444444444444433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2

Probab=96.70  E-value=0.72  Score=46.05  Aligned_cols=12  Identities=17%  Similarity=0.324  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q 010679           55 IASQHVEMQKLA   66 (504)
Q Consensus        55 Le~~~eEIq~Le   66 (504)
                      |+.+...|..|.
T Consensus        31 i~~Le~~Lk~l~   42 (234)
T cd07664          31 FENLDQQLRKLH   42 (234)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>PTZ00464 SNF-7-like protein; Provisional

Probab=96.70  E-value=0.37  Score=47.39  Aligned_cols=24  Identities=8%  Similarity=0.070  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKLATENQRLAA   74 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le~e~qrLe~   74 (504)
                      +.+.+..++.++..|...+.+|..
T Consensus        16 ~~d~~~~l~~r~~~l~kKi~~ld~   39 (211)
T PTZ00464         16 LEDASKRIGGRSEVVDARINKIDA   39 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444554444444444444433333

>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]

Probab=96.68  E-value=0.18  Score=51.35  Aligned_cols=14  Identities=14%  Similarity=0.299  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHhh
Q 010679          177 LESLRQEYHHCRGT  190 (504)
Q Consensus       177 IeaLrqELq~LR~e  190 (504)
                      ++++..|++.++++
T Consensus       310 L~eVm~e~E~~Kqe  323 (384)
T KOG0972|consen  310 LDEVMDEIEQLKQE  323 (384)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=96.68  E-value=0.003  Score=65.33  Aligned_cols=19  Identities=16%  Similarity=0.347  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhhhc
Q 010679           80 RQELAAAQHELQILHGQIG   98 (504)
Q Consensus        80 kqELa~lqqEL~~L~~~L~   98 (504)
                      .-+|..+.++|..|+..+.
T Consensus        27 ~GDLs~I~eRLsaLEssv~   45 (326)
T PF04582_consen   27 PGDLSPIRERLSALESSVA   45 (326)
T ss_dssp             -------------------
T ss_pred             cccHHHHHHHHHHHHHHHH
Confidence            3344444444444444433

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF14735 HAUS4: HAUS augmin-like complex subunit 4

Probab=96.66  E-value=0.84  Score=45.73  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          202 LESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       202 ~eqlqemek~L~sme~EiekLraELek  228 (504)
                      .+..+.+....+.+.+|..+++.+|++
T Consensus       201 L~~Ye~lg~~F~~ivreY~~l~~~ie~  227 (238)
T PF14735_consen  201 LESYEGLGPEFEEIVREYTDLQQEIEN  227 (238)
T ss_pred             HHHHhcccHhHHHHHHHHHHHHHHHHH
Confidence            334444555666677777777777766

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=96.63  E-value=0.19  Score=53.57  Aligned_cols=16  Identities=6%  Similarity=0.081  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          130 LEFQKSKTEAQNLVVA  145 (504)
Q Consensus       130 aELeqLr~ELqeL~ae  145 (504)
                      .||++++.+|.+...+
T Consensus       309 kelE~lR~~L~kAEke  324 (575)
T KOG4403|consen  309 KELEQLRVALEKAEKE  324 (575)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4555555555544433

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.058  Score=47.30  Aligned_cols=48  Identities=19%  Similarity=0.198  Sum_probs=27.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       181 rqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      +++++++|..   ..+.++.+..++...++++..++++.++.+..|.++.+
T Consensus        64 kqel~EAr~n---V~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~  111 (120)
T KOG3478|consen   64 KQELEEARTN---VGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQ  111 (120)
T ss_pred             HHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555543   23445555555666666666666666666666666554

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=96.62  E-value=0.059  Score=54.42  Aligned_cols=15  Identities=13%  Similarity=0.189  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQN  141 (504)
Q Consensus       127 ~LkaELeqLr~ELqe  141 (504)
                      +.+.||++|++-++.
T Consensus       121 EARkEIkQLkQvieT  135 (305)
T PF15290_consen  121 EARKEIKQLKQVIET  135 (305)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444444433333

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=96.62  E-value=0.034  Score=50.71  Aligned_cols=27  Identities=22%  Similarity=0.400  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          200 DHLESLQVMEKNYITMATEVEKLRAEL  226 (504)
Q Consensus       200 el~eqlqemek~L~sme~EiekLraEL  226 (504)
                      .+.+.+..+.+++..+.++++++...+
T Consensus       105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l  131 (140)
T PRK03947        105 ELEKALEKLEEALQKLASRIAQLAQEL  131 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.61  E-value=0.29  Score=49.46  Aligned_cols=37  Identities=22%  Similarity=0.095  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 010679          192 EYEKKFYNDHLESLQVMEKNY-------ITMATEVEKLRAELMN  228 (504)
Q Consensus       192 e~~kk~~~el~eqlqemek~L-------~sme~EiekLraELek  228 (504)
                      +.+++....+.-.++.|-...       +.|.....+|..||--
T Consensus       163 EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnhELfv  206 (389)
T KOG4687|consen  163 EGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFV  206 (389)
T ss_pred             HHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            334444444444444443333       3344444444445443

>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins

Probab=96.60  E-value=0.92  Score=46.62  Aligned_cols=19  Identities=26%  Similarity=0.400  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHhH
Q 010679          109 RNLTEKIAKMEAELKTAEP  127 (504)
Q Consensus       109 ~eL~eki~kLEaEL~ele~  127 (504)
                      ..|-..|..++.+|..+..
T Consensus        62 ~~lw~~i~el~~~L~~l~~   80 (289)
T PF05149_consen   62 QELWREIQELERELQDLAE   80 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444455555555554443

The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum

>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.60  E-value=1.2  Score=48.05  Aligned_cols=14  Identities=21%  Similarity=0.238  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHH
Q 010679          131 EFQKSKTEAQNLVV  144 (504)
Q Consensus       131 ELeqLr~ELqeL~a  144 (504)
                      +++.+..+|.++..
T Consensus       115 e~~~le~~L~~~~~  128 (438)
T COG4487         115 ELELLEKELDELSK  128 (438)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein

Probab=96.60  E-value=0.74  Score=44.24  Aligned_cols=16  Identities=19%  Similarity=0.345  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679           73 AATHGTLRQELAAAQH   88 (504)
Q Consensus        73 e~qi~~LkqELa~lqq   88 (504)
                      ...+..+.+.|+.+.+
T Consensus        16 ~~~~~~~~~~l~~l~~   31 (204)
T PF04740_consen   16 NSSLKELKEQLESLQK   31 (204)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=96.59  E-value=0.36  Score=50.74  Aligned_cols=27  Identities=7%  Similarity=0.007  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          203 ESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       203 eqlqemek~L~sme~EiekLraELekl  229 (504)
                      .++.+++.+++..+.-++.+...++++
T Consensus       278 ~~~~~L~re~~~a~~~y~~~l~r~~~a  304 (362)
T TIGR01010       278 ADYQRLVLQNELAQQQLKAALTSLQQT  304 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444443

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PTZ00464 SNF-7-like protein; Provisional

Probab=96.59  E-value=0.29  Score=48.15  Aligned_cols=31  Identities=10%  Similarity=0.109  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTL   79 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~L   79 (504)
                      ..++.++..+..+|..|..++..+...+...
T Consensus        21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~   51 (211)
T PTZ00464         21 KRIGGRSEVVDARINKIDAELMKLKEQIQRT   51 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5566666666666666666655555544433

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=96.59  E-value=0.19  Score=43.98  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK  210 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek  210 (504)
                      +..|+.++.+++..++..+-.+.++..++...++
T Consensus        60 ~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~   93 (107)
T PF09304_consen   60 IAELQAKIDEARRNLEDEKQAKLELESRLLKAQK   93 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444455555555555544444444444444433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=96.58  E-value=0.071  Score=55.60  Aligned_cols=17  Identities=12%  Similarity=0.218  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKLAT   67 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le~   67 (504)
                      ++.++..++.++..++.
T Consensus        84 ~~~~l~~a~a~l~~a~a  100 (346)
T PRK10476         84 YELTVAQAQADLALADA  100 (346)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444443333

>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here

Probab=96.58  E-value=0.22  Score=46.40  Aligned_cols=19  Identities=16%  Similarity=0.176  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHhhHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEK  195 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~k  195 (504)
                      ++.+..+++.++.++...+
T Consensus       141 ~~~~l~~~~~~~~~~~~~~  159 (213)
T cd00176         141 VEELLKKHKELEEELEAHE  159 (213)
T ss_pred             HHHHHHHHHHHHHHHHhch
Confidence            3333333344444443333

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=96.58  E-value=1  Score=50.35  Aligned_cols=17  Identities=18%  Similarity=0.399  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHhhhcc
Q 010679           83 LAAAQHELQILHGQIGG   99 (504)
Q Consensus        83 La~lqqEL~~L~~~L~~   99 (504)
                      +..+..++..|..+|..
T Consensus       253 i~~a~~~i~~L~~~l~~  269 (582)
T PF09731_consen  253 IAHAKERIDALQKELAE  269 (582)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444444433

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1

Probab=96.57  E-value=0.95  Score=45.23  Aligned_cols=88  Identities=11%  Similarity=0.154  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhhH
Q 010679          107 QMRNLTEKIAKMEAELK-----TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ---------QIPA  172 (504)
Q Consensus       107 eL~eL~eki~kLEaEL~-----ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq---------ql~~  172 (504)
                      ++.++.++|..+-++..     .+.....|.-.+-.-+..+-.+|..+-...+.++.+|++.+..+.         ++..
T Consensus        84 ~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~  163 (234)
T cd07665          84 QLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQ  163 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            44444555544433332     222333444444444555555555555555555555554333322         2333


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHH
Q 010679          173 LLSELESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~  194 (504)
                      +..|+..++...+.++.+++..
T Consensus       164 a~~Ev~e~e~k~~~a~~~fe~i  185 (234)
T cd07665         164 AKDEIAEWESRVTQYERDFERI  185 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.57  E-value=1.2  Score=48.12  Aligned_cols=49  Identities=10%  Similarity=0.106  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          103 ERELQMRNLTEKIAKMEAELKT----AEPVKLEFQKSKTEAQNLVVAREELIA  151 (504)
Q Consensus       103 e~E~eL~eL~eki~kLEaEL~e----le~LkaELeqLr~ELqeL~aerqeL~a  151 (504)
                      +++.-+.+|++.+..++.....    +......+..+...+.++...+.++..
T Consensus       252 El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~  304 (412)
T PF04108_consen  252 ELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGE  304 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666655544    333333344444433333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=96.57  E-value=0.19  Score=49.58  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIA  151 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~a  151 (504)
                      .++.++..++.+++++...|+..+.
T Consensus       147 ~le~~l~~~k~~ie~vN~~RK~~Q~  171 (221)
T PF05700_consen  147 RLEKELAKLKKEIEEVNRERKRRQE  171 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555544333

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=96.56  E-value=0.12  Score=54.83  Aligned_cols=21  Identities=24%  Similarity=0.161  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010679           73 AATHGTLRQELAAAQHELQIL   93 (504)
Q Consensus        73 e~qi~~LkqELa~lqqEL~~L   93 (504)
                      .+.+..|+.+|+...+...++
T Consensus        12 dqr~~~~~~~laq~~k~~s~~   32 (459)
T KOG0288|consen   12 DQRLIDLNTELAQCEKAQSRL   32 (459)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            333333444444333333333

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=96.55  E-value=0.35  Score=51.86  Aligned_cols=37  Identities=16%  Similarity=0.052  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010679          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVME  209 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqeme  209 (504)
                      ++.|+++++.|+.--+++++.++..+-.|..++++||
T Consensus       307 s~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~E  343 (554)
T KOG4677|consen  307 SRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIE  343 (554)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444333333333333333333333333333

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.42  Score=55.01  Aligned_cols=63  Identities=17%  Similarity=0.268  Sum_probs=38.3

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 010679           39 FPPFDMMPPPEVMEQKIASQHVEMQKLATENQR---LAATHGTLRQELAAAQHELQILHGQIGGMK  101 (504)
Q Consensus        39 ~~~~~~~p~~~~LEqeLe~~~eEIq~Le~e~qr---Le~qi~~LkqELa~lqqEL~~L~~~L~~l~  101 (504)
                      |.|.-.-|.+..+-++|.....+|+..+.+...   |.++.......|+.++.+|..+...|..+.
T Consensus       174 yKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~  239 (984)
T COG4717         174 YKPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIRALR  239 (984)
T ss_pred             cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666677777777777777777666555443   334444444556666666666666665533

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=96.54  E-value=0.083  Score=51.81  Aligned_cols=34  Identities=21%  Similarity=0.436  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~EL  160 (504)
                      .++..++.++.+++++..+..+|..++.+|+.++
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~  165 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEY  165 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444333333333333

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=96.52  E-value=0.88  Score=44.24  Aligned_cols=12  Identities=17%  Similarity=0.379  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q 010679           54 KIASQHVEMQKL   65 (504)
Q Consensus        54 eLe~~~eEIq~L   65 (504)
                      .+.....+...+
T Consensus        28 ~~~~A~~~A~~i   39 (201)
T PF12072_consen   28 KLEQAEKEAEQI   39 (201)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=96.52  E-value=0.13  Score=54.91  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR  223 (504)
Q Consensus       175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLr  223 (504)
                      .||..|+++|...+..+++.      ..++.+++.+.|+++...|.+|+
T Consensus       276 ~Ei~~LKqeLa~~EEK~~Yq------s~eRaRdi~E~~Es~qtRisklE  318 (395)
T PF10267_consen  276 NEIYNLKQELASMEEKMAYQ------SYERARDIWEVMESCQTRISKLE  318 (395)
T ss_pred             HHHHHHHHHHHhHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHH
Confidence            34555555554444444332      12233444444444444444444

Its function is unknown.

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=96.52  E-value=0.13  Score=52.11  Aligned_cols=61  Identities=13%  Similarity=0.155  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      +.....+++.+..++.+.+.++...+..+.+...++..++.+...|.+.+..++.+|+++.
T Consensus       202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~  262 (269)
T PF05278_consen  202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH  262 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4445566777777777777777777777777777777777777778888888888888764

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]

Probab=96.51  E-value=0.49  Score=47.71  Aligned_cols=41  Identities=17%  Similarity=0.374  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV  167 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~el  167 (504)
                      .+..++++++..|..+......|..+|+.-+.++.++++++
T Consensus       116 ~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRl  156 (338)
T KOG3647|consen  116 AIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRL  156 (338)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555544443

>KOG2196 consensus Nuclear porin [Nuclear structure]

Probab=96.50  E-value=0.6  Score=46.48  Aligned_cols=32  Identities=9%  Similarity=0.034  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          200 DHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       200 el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      .+.+-+..+.+.|+.+......++++|+++.|
T Consensus       216 qi~Kilnah~~sLqwl~d~st~~e~k~d~i~K  247 (254)
T KOG2196|consen  216 QIEKILNAHMDSLQWLDDNSTQLEKKLDKIKK  247 (254)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            34444445555555555555555555555444

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.32  Score=53.27  Aligned_cols=12  Identities=8%  Similarity=0.072  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q 010679          145 AREELIAKVHQL  156 (504)
Q Consensus       145 erqeL~aqvq~L  156 (504)
                      +.+.|.+-++.+
T Consensus       670 ~~~~L~~~iET~  681 (741)
T KOG4460|consen  670 QLRHLGNAIETV  681 (741)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.49  E-value=0.78  Score=49.45  Aligned_cols=20  Identities=15%  Similarity=0.066  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHhccc
Q 010679          212 YITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       212 L~sme~EiekLraELekle~  231 (504)
                      .+.|++-+..+..+|+++..
T Consensus       362 ~~k~~~i~~~~~eeL~~l~e  381 (412)
T PF04108_consen  362 RDKMKKIIREANEELDKLRE  381 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34567777888888888776

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy

>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12)

Probab=96.48  E-value=1.1  Score=46.25  Aligned_cols=24  Identities=17%  Similarity=0.123  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           53 QKIASQHVEMQKLATENQRLAATH   76 (504)
Q Consensus        53 qeLe~~~eEIq~Le~e~qrLe~qi   76 (504)
                      ++.+..+++-......+.++.+.+
T Consensus        41 Q~~EQAr~~A~~fA~~ld~~~~kl   64 (301)
T PF06120_consen   41 QNAEQARQEAIEFADSLDELKEKL   64 (301)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHH
Confidence            344444444333333333433333

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=96.47  E-value=0.12  Score=55.16  Aligned_cols=55  Identities=11%  Similarity=0.061  Sum_probs=32.1

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010679          181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR  235 (504)
Q Consensus       181 rqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~  235 (504)
                      +.+.+++.++.....+.+....-++-+.+.++.+++.+++=-..+++++++.+..
T Consensus       217 ~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~  271 (447)
T KOG2751|consen  217 EFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVF  271 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3333333333333444444555555556677777777777777778887764433

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=96.46  E-value=1.3  Score=46.85  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          206 QVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       206 qemek~L~sme~EiekLraELekle~  231 (504)
                      ..+.++.+.+.+|+++.++|++.++.
T Consensus       352 aaLrkerd~L~keLeekkreleql~~  377 (442)
T PF06637_consen  352 AALRKERDSLAKELEEKKRELEQLKM  377 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666777777788877777777764

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins

Probab=96.46  E-value=0.85  Score=44.55  Aligned_cols=45  Identities=18%  Similarity=0.242  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L   93 (504)
                      +.++.++..+...+..|..+..+....+..+..--..+...+..+
T Consensus         5 ~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~l   49 (216)
T cd07599           5 EELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAEL   49 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666666666666655443333333333333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=96.46  E-value=0.088  Score=56.25  Aligned_cols=33  Identities=24%  Similarity=0.265  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           65 LATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        65 Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      .+..|++....|..|+.+|+...++|.+++..-
T Consensus        53 FekkNqksa~~i~~lqkkL~~y~~~l~ele~~~   85 (395)
T PF10267_consen   53 FEKKNQKSAQTIAQLQKKLEQYHKRLKELEQGG   85 (395)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            345577777778888888888887777776654

Its function is unknown.

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=96.46  E-value=0.0048  Score=63.78  Aligned_cols=26  Identities=12%  Similarity=0.170  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          203 ESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       203 eqlqemek~L~sme~EiekLraELek  228 (504)
                      ..+..+.-++..|++.++.|+.....
T Consensus       133 sdVSt~aL~ItdLe~RV~~LEs~~s~  158 (326)
T PF04582_consen  133 SDVSTQALNITDLESRVKALESGSSS  158 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             hhhhhhcchHhhHHHHHHHHhcCCCC
Confidence            33344444555555555555555443

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>COG5293 Predicted ATPase [General function prediction only]

Probab=96.44  E-value=0.92  Score=48.97  Aligned_cols=66  Identities=14%  Similarity=0.088  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 010679          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~  194 (504)
                      ++.||.+++.+|.++..++++|..++.++..-|.. ..-..+...+..++-+++.||.+++-.++.+
T Consensus       340 l~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~-~g~~e~y~~l~ee~~~~~~elae~~~rie~l  405 (591)
T COG5293         340 LQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKN-RGVFEKYQTLCEEIIALRGELAELEYRIEPL  405 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHhhhHHHHHHhhhHH
Confidence            44455555555555555555555554444333321 0011223333444444444555444444443

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=96.44  E-value=0.33  Score=49.75  Aligned_cols=13  Identities=23%  Similarity=0.281  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHhhH
Q 010679          179 SLRQEYHHCRGTY  191 (504)
Q Consensus       179 aLrqELq~LR~eL  191 (504)
                      -|+.|+++|+..|
T Consensus       119 ~lQgEmQ~LrDKL  131 (351)
T PF07058_consen  119 FLQGEMQQLRDKL  131 (351)
T ss_pred             HHHHHHHHHHHHH
Confidence            3445555555443

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.51  Score=48.73  Aligned_cols=28  Identities=18%  Similarity=0.328  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATH   76 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi   76 (504)
                      +..=++++..+..|..|.....+|...+
T Consensus        36 ~~Ff~~ve~Ir~~i~~l~~~~~~l~~~h   63 (297)
T KOG0810|consen   36 EEFFEDVEEIRDDIEKLDEDVEKLQKLH   63 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555566666666666666666666555

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=96.43  E-value=0.43  Score=52.38  Aligned_cols=49  Identities=18%  Similarity=0.285  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR  223 (504)
Q Consensus       172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLr  223 (504)
                      .+...|..|+.||..-|.-+   +.++..+.+++-.|.++|.+...+|+.|+
T Consensus       466 ~a~~~i~~LqDEL~TTr~NY---E~QLs~MSEHLasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  466 EANQNISRLQDELETTRRNY---EEQLSMMSEHLASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444555555555444432   23455555555555555555555555554

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells

Probab=96.43  E-value=1.2  Score=44.68  Aligned_cols=51  Identities=24%  Similarity=0.301  Sum_probs=29.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679           45 MPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (504)
Q Consensus        45 ~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~   98 (504)
                      .|-++.-=++|+...++|..|+.++......+..+   |.....+|..+.+.|.
T Consensus         6 dprVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~---l~e~~~kL~~~~kkLg   56 (239)
T PF05276_consen    6 DPRVQEELEKLNQATDEINRLENELDEARATFRRL---LSESTKKLNELAKKLG   56 (239)
T ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            34555444577777778888877665555544433   3444555555555544

>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins

Probab=96.43  E-value=1.2  Score=44.73  Aligned_cols=16  Identities=6%  Similarity=0.156  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHhcc
Q 010679          215 MATEVEKLRAELMNAP  230 (504)
Q Consensus       215 me~EiekLraELekle  230 (504)
                      +..-.+.++..|+.+.
T Consensus       220 ~~~~~e~~~~~~~~id  235 (261)
T cd07648         220 VGQVHEEFKRQVDELT  235 (261)
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            3444455555555544

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=0.14  Score=55.55  Aligned_cols=29  Identities=17%  Similarity=0.261  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 010679          132 FQKSKTEAQNLVVAR---EELIAKVHQLTQDL  160 (504)
Q Consensus       132 LeqLr~ELqeL~aer---qeL~aqvq~L~~EL  160 (504)
                      -++|+.+|+.|..++   .+|..+++.|.+.+
T Consensus       413 EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~  444 (508)
T KOG3091|consen  413 EEELRAKLDTLLAQLNAPNQLKARLDELYEIL  444 (508)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            344444544444443   45555565555444

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.064  Score=47.98  Aligned_cols=36  Identities=17%  Similarity=0.201  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          194 EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       194 ~kk~~~el~eqlqemek~L~sme~EiekLraELekl  229 (504)
                      +++.++.+..+++.++++...+..++++|+++|-++
T Consensus        75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~  110 (119)
T COG1382          75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA  110 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555566666666666666677777666553

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)

Probab=96.40  E-value=1.1  Score=44.02  Aligned_cols=46  Identities=9%  Similarity=0.083  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      ++++..+.+.|..++....+|-..+..+....+.+......+.+.+
T Consensus         3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~   48 (211)
T cd07598           3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSI   48 (211)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            4566666677777776666666666665555444444444444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=96.38  E-value=0.096  Score=46.05  Aligned_cols=25  Identities=12%  Similarity=0.298  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          132 FQKSKTEAQNLVVAREELIAKVHQL  156 (504)
Q Consensus       132 LeqLr~ELqeL~aerqeL~aqvq~L  156 (504)
                      ++.++.+++.+..++..|..++.+.
T Consensus        12 ~q~~q~~~~~l~~q~~~le~~~~E~   36 (110)
T TIGR02338        12 LQQLQQQLQAVATQKQQVEAQLKEA   36 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333343444443333333

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A

Probab=96.36  E-value=1.3  Score=45.01  Aligned_cols=34  Identities=15%  Similarity=0.204  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           64 KLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        64 ~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      .|..-..++...+.+.++.|.....+-..++...
T Consensus        33 ~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~   66 (296)
T PF13949_consen   33 ELPELSQEVRSILDEIEEMLDEEEREDEQLRAKY   66 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333444444455555554444444444444

>PRK09343 prefoldin subunit beta; Provisional

Probab=96.36  E-value=0.094  Score=47.05  Aligned_cols=26  Identities=15%  Similarity=0.259  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          203 ESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       203 eqlqemek~L~sme~EiekLraELek  228 (504)
                      .+++.++++...+++.+++++.+|..
T Consensus        85 ~~ik~lekq~~~l~~~l~e~q~~l~~  110 (121)
T PRK09343         85 LRSRTLEKQEKKLREKLKELQAKINE  110 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444

>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]

Probab=96.35  E-value=1.1  Score=47.89  Aligned_cols=37  Identities=11%  Similarity=0.104  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       195 kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      ++.+.+.++...+++.++..+.+||.+.+..|+.+++
T Consensus       277 ~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~  313 (421)
T KOG2685|consen  277 KKRIRETQDARNKLEWQLAKTLEEIADAENNIEALER  313 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3445556666666777777777777777777777665

>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria

Probab=96.34  E-value=1.1  Score=43.49  Aligned_cols=14  Identities=21%  Similarity=0.418  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHhh
Q 010679          177 LESLRQEYHHCRGT  190 (504)
Q Consensus       177 IeaLrqELq~LR~e  190 (504)
                      |..|+.|+..+..+
T Consensus       165 I~sL~~e~~~~~~d  178 (201)
T PF11172_consen  165 IASLQGEFSSIESD  178 (201)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444443

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=96.34  E-value=0.12  Score=59.42  Aligned_cols=13  Identities=8%  Similarity=0.271  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHHH
Q 010679          109 RNLTEKIAKMEAE  121 (504)
Q Consensus       109 ~eL~eki~kLEaE  121 (504)
                      ++|.+.+.+..++
T Consensus        68 ~~Lsq~L~~~~~r   80 (835)
T COG3264          68 DQLSQALNQQTER   80 (835)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=96.33  E-value=1  Score=48.90  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=9.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhH
Q 010679          170 IPALLSELESLRQEYHHCRGTY  191 (504)
Q Consensus       170 l~~L~~EIeaLrqELq~LR~eL  191 (504)
                      +..++.+|.+|+++|+..+..+
T Consensus       316 V~~l~~rI~aLe~QIa~er~kl  337 (434)
T PRK15178        316 IPRLSAKIKVLEKQIGEQRNRL  337 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHh
Confidence            3344444444444444444433

>PF14735 HAUS4: HAUS augmin-like complex subunit 4

Probab=96.29  E-value=0.83  Score=45.78  Aligned_cols=50  Identities=24%  Similarity=0.355  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      ++.++++++.++..|+    .++.+-..+.++-++...+.++|+..+=.|++++
T Consensus       187 ~~~~e~~~~~a~~~L~----~Ye~lg~~F~~ivreY~~l~~~ie~k~Wal~e~~  236 (238)
T PF14735_consen  187 IEELEQELQKARQRLE----SYEGLGPEFEEIVREYTDLQQEIENKRWALEEFS  236 (238)
T ss_pred             HHHHHHHHHHHHHHHH----HHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444444444433    2334444566666666666777777776666654

>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia

Probab=96.27  E-value=1  Score=42.36  Aligned_cols=32  Identities=31%  Similarity=0.350  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679           64 KLATENQRLAATHGTLRQELAAAQHELQILHG   95 (504)
Q Consensus        64 ~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~   95 (504)
                      ......++|...+..++.+|+.+..++.....
T Consensus        12 rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a   43 (158)
T PF09486_consen   12 RRRRRERRLRARLAAQRRALAAAEAELAEQQA   43 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445555555555555554444444333

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=96.26  E-value=0.32  Score=52.68  Aligned_cols=23  Identities=17%  Similarity=0.075  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcc
Q 010679           77 GTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        77 ~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      .-.+++++.+++++...+..|..
T Consensus       245 ~~Ae~ev~~Ae~rl~~Ar~aL~~  267 (434)
T PRK15178        245 LWLENDVKSAQENLGAARLELLK  267 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444433

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.78  Score=44.31  Aligned_cols=36  Identities=11%  Similarity=0.192  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELA   84 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa   84 (504)
                      ..|..-|.....+-+.++..+.+|..++..++.+|.
T Consensus        15 psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~   50 (218)
T KOG1655|consen   15 PSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIK   50 (218)
T ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555555555544433

>KOG4787 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.32  Score=53.59  Aligned_cols=32  Identities=19%  Similarity=0.334  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLR   80 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lk   80 (504)
                      ..++-+|+.++.+|++++.++..|...|..|.
T Consensus       335 ~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~  366 (852)
T KOG4787|consen  335 ELAESQVQHLNTKIERLEKTNDHLNKKIVELE  366 (852)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            44455555555555555555555544444443

>PRK09343 prefoldin subunit beta; Provisional

Probab=96.23  E-value=0.1  Score=46.85  Aligned_cols=32  Identities=0%  Similarity=-0.003  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          193 YEKKFYNDHLESLQVMEKNYITMATEVEKLRA  224 (504)
Q Consensus       193 ~~kk~~~el~eqlqemek~L~sme~EiekLra  224 (504)
                      .+...+..++++...+++++..++.+|.++-.
T Consensus        82 ~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~  113 (121)
T PRK09343         82 LLELRSRTLEKQEKKLREKLKELQAKINEMLS  113 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444433

>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6

Probab=96.20  E-value=1.5  Score=43.45  Aligned_cols=59  Identities=19%  Similarity=0.325  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          107 QMRNLTEKIAKMEAELKTAE-----PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (504)
Q Consensus       107 eL~eL~eki~kLEaEL~ele-----~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~  165 (504)
                      ++.++.+++.+++.....-+     .+..+...+-.-+..+..+|...-..-+.....|++.+.
T Consensus        85 ~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~  148 (219)
T cd07621          85 KVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKDLLYRRLRCLANYENANKNLEKARA  148 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            44455555555554443222     222222233333344444444444444455555554443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=1.2  Score=51.58  Aligned_cols=39  Identities=18%  Similarity=0.218  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM  215 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sm  215 (504)
                      +..|+++...+...|+..-+.+..+.-.++.+++.|...
T Consensus       813 ~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~  851 (984)
T COG4717         813 VAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLF  851 (984)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555443

>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B

Probab=96.19  E-value=1.3  Score=45.14  Aligned_cols=27  Identities=15%  Similarity=0.059  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010679          176 ELESLRQEYHHCRGTYEYEKKFYNDHL  202 (504)
Q Consensus       176 EIeaLrqELq~LR~eLe~~kk~~~el~  202 (504)
                      .|..|++||.+++.+.....+.+..++
T Consensus       166 kl~~LeqELvraEae~lvaEAqL~n~k  192 (271)
T PF13805_consen  166 KLVVLEQELVRAEAENLVAEAQLSNIK  192 (271)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence            466677777666666555555555444

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=96.19  E-value=0.12  Score=47.22  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE  225 (504)
Q Consensus       192 e~~kk~~~el~eqlqemek~L~sme~EiekLraE  225 (504)
                      +.+.+.+..+.+.+..+.++++.+...+.++..+
T Consensus       104 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  137 (140)
T PRK03947        104 EELEKALEKLEEALQKLASRIAQLAQELQQLQQE  137 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444555555555555555555444

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=96.19  E-value=0.088  Score=46.27  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          136 KTEAQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       136 r~ELqeL~aerqeL~aqvq~L~~EL  160 (504)
                      ..+++.++.+++.+..+++.|+.++
T Consensus         9 ~~~~q~~q~~~~~l~~q~~~le~~~   33 (110)
T TIGR02338         9 LAQLQQLQQQLQAVATQKQQVEAQL   33 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444333

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.15  Score=45.65  Aligned_cols=25  Identities=16%  Similarity=0.444  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          131 EFQKSKTEAQNLVVAREELIAKVHQ  155 (504)
Q Consensus       131 ELeqLr~ELqeL~aerqeL~aqvq~  155 (504)
                      ++++++.+++.+..+++.++.++++
T Consensus        14 q~QqLq~ql~~~~~qk~~le~qL~E   38 (119)
T COG1382          14 QLQQLQQQLQKVILQKQQLEAQLKE   38 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444443333

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.17  E-value=1  Score=44.06  Aligned_cols=77  Identities=19%  Similarity=0.214  Sum_probs=35.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhccc----hHHHHHHHHHHHHHHHH
Q 010679           47 PPEVMEQKIASQHVEMQKLATENQRLA-----ATHGTLRQELAAAQHELQILHGQIGGM----KSERELQMRNLTEKIAK  117 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe-----~qi~~LkqELa~lqqEL~~L~~~L~~l----~ae~E~eL~eL~eki~k  117 (504)
                      +.+..|++...+.++|.........+.     ..+.+.+..|+++++-|.++..++..+    +.-...++++.+..+.+
T Consensus         4 ~fe~yEqqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~   83 (220)
T KOG1666|consen    4 LFEGYEQQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKK   83 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHH
Confidence            345566777777776665544433332     123333334444444444444444332    22233344444444444


Q ss_pred             HHHHHH
Q 010679          118 MEAELK  123 (504)
Q Consensus       118 LEaEL~  123 (504)
                      ++.|++
T Consensus        84 l~~e~k   89 (220)
T KOG1666|consen   84 LKRELK   89 (220)
T ss_pred             HHHHHH
Confidence            444444

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=96.14  E-value=0.36  Score=49.73  Aligned_cols=18  Identities=6%  Similarity=-0.021  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 010679          212 YITMATEVEKLRAELMNA  229 (504)
Q Consensus       212 L~sme~EiekLraELekl  229 (504)
                      +..++.+++.++..++++
T Consensus       188 i~~~~~~l~~a~~~l~~~  205 (334)
T TIGR00998       188 VQEAKERLKTAWLALKRT  205 (334)
T ss_pred             HHHHHHHHHHHHHHhhCc
Confidence            444445555555555443

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.14  E-value=0.4  Score=54.30  Aligned_cols=15  Identities=27%  Similarity=0.282  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679          212 YITMATEVEKLRAEL  226 (504)
Q Consensus       212 L~sme~EiekLraEL  226 (504)
                      +..+..-+++|+++.
T Consensus       228 l~~L~~~v~~l~~~k  242 (660)
T KOG4302|consen  228 LDRLDKMVKKLKEEK  242 (660)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344556666665553

>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia

Probab=96.13  E-value=1.2  Score=41.92  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           73 AATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        73 e~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      ......|+..|..+..++..+...++.
T Consensus        14 ~R~~~rL~~~L~~~r~al~~~~a~~~~   40 (158)
T PF09486_consen   14 RRRERRLRARLAAQRRALAAAEAELAE   40 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555555555555555444443

>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]

Probab=96.13  E-value=0.92  Score=51.89  Aligned_cols=23  Identities=13%  Similarity=0.192  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Q 010679          208 MEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       208 mek~L~sme~EiekLraELekle  230 (504)
                      .+.-+.-|...++.++.++++.+
T Consensus      1202 ~eaiIa~ld~d~dh~~de~ekdr 1224 (1424)
T KOG4572|consen 1202 TEAIIAMLDIDIDHDRDEIEKDR 1224 (1424)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHH
Confidence            44455567888888888888765

>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function

Probab=96.12  E-value=1.4  Score=42.40  Aligned_cols=20  Identities=25%  Similarity=0.192  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010679          207 VMEKNYITMATEVEKLRAEL  226 (504)
Q Consensus       207 emek~L~sme~EiekLraEL  226 (504)
                      +..+.+..++.|-+.|+.-|
T Consensus       157 ~~qe~i~qL~~EN~~LRelL  176 (181)
T PF05769_consen  157 EEQEIIAQLETENKGLRELL  176 (181)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            34444555566666666554

One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].

>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5

Probab=96.12  E-value=1.6  Score=43.16  Aligned_cols=18  Identities=33%  Similarity=0.521  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010679          106 LQMRNLTEKIAKMEAELK  123 (504)
Q Consensus       106 ~eL~eL~eki~kLEaEL~  123 (504)
                      .++.++.+++.+++....
T Consensus        83 s~lae~~Ek~~~l~~r~A  100 (218)
T cd07663          83 LKVAELFEKLRKVEDRVA  100 (218)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345555666666555443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=96.12  E-value=1.5  Score=43.55  Aligned_cols=15  Identities=7%  Similarity=0.372  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKL   65 (504)
Q Consensus        51 LEqeLe~~~eEIq~L   65 (504)
                      +...+.....++.+.
T Consensus        30 i~~n~s~~e~~i~qi   44 (280)
T COG5074          30 INKNLSVYEKEINQI   44 (280)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444444444333

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=96.12  E-value=0.12  Score=46.73  Aligned_cols=36  Identities=11%  Similarity=0.170  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~  162 (504)
                      .++.|+..++.++..+..++..+...+..|+..|..
T Consensus        86 ~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~  121 (126)
T PF07889_consen   86 QIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE  121 (126)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555555555555443

The region featured in this family is approximately 100 amino acids long.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=96.12  E-value=0.054  Score=51.04  Aligned_cols=64  Identities=20%  Similarity=0.236  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010679          132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK  196 (504)
Q Consensus       132 LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk  196 (504)
                      +..+..++.+++.++.+|..++..|+.+|..+..... ..++..+|..|+.|+..++..|+.++.
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPT-NEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444444555555555555555554444321 234555566666666666655555443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=96.11  E-value=0.42  Score=49.00  Aligned_cols=35  Identities=11%  Similarity=0.053  Sum_probs=16.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLR   80 (504)
Q Consensus        46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lk   80 (504)
                      .+-..|..+|++|++|-.-|+.-+++-..+++.|.
T Consensus         7 N~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLs   41 (351)
T PF07058_consen    7 NQNQELMKQIEICQEENKILDKMHRQKVLEVEKLS   41 (351)
T ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445556666666655544444333333333333

>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []

Probab=96.10  E-value=0.55  Score=54.54  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Q 010679           75 THGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        75 qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      ++..++++...+++++..++.++
T Consensus        71 ev~~l~~ea~~L~~~~~~v~~~~   93 (766)
T PF10191_consen   71 EVDRLRQEAASLQEQMASVQEEI   93 (766)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=96.09  E-value=1.7  Score=44.59  Aligned_cols=15  Identities=33%  Similarity=0.519  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHhc
Q 010679          215 MATEVEKLRAELMNA  229 (504)
Q Consensus       215 me~EiekLraELekl  229 (504)
                      ...+++.|+.||..|
T Consensus       282 ~~~~~~~l~~ei~~L  296 (297)
T PF02841_consen  282 FQEEAEKLQKEIQDL  296 (297)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            345555555555544

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=96.08  E-value=0.11  Score=45.14  Aligned_cols=29  Identities=17%  Similarity=0.296  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          129 KLEFQKSKTEAQNLVVAREELIAKVHQLT  157 (504)
Q Consensus       129 kaELeqLr~ELqeL~aerqeL~aqvq~L~  157 (504)
                      ..+++.++.+++.+..+++.|..++.+..
T Consensus         5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~   33 (105)
T cd00632           5 LAQLQQLQQQLQAYIVQRQKVEAQLNENK   33 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555544444443

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2

Probab=96.07  E-value=1.7  Score=42.94  Aligned_cols=15  Identities=20%  Similarity=0.377  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679           54 KIASQHVEMQKLATE   68 (504)
Q Consensus        54 eLe~~~eEIq~Le~e   68 (504)
                      .|..++..|..|...
T Consensus        20 ~i~~Le~~Lk~l~~~   34 (224)
T cd07623          20 QIENLDQQLRKLHAS   34 (224)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=96.06  E-value=0.11  Score=50.93  Aligned_cols=55  Identities=20%  Similarity=0.260  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe  227 (504)
                      +.++++.|+.|+++...+++..++....++++.+++.++.+.+..|.++|+.+++
T Consensus       156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            3444555555555555555555555555555555555555555555555555554

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=96.05  E-value=0.23  Score=51.20  Aligned_cols=41  Identities=15%  Similarity=0.228  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE   89 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqE   89 (504)
                      ..++.+++.++.++..++.++..++..+..++.++..++.+
T Consensus        76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  116 (334)
T TIGR00998        76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIK  116 (334)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666655555555555444444444433333

>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]

Probab=96.04  E-value=2.2  Score=44.05  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       192 e~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      +.+++.+..|+.+++........--+.|+.+..+|..
T Consensus       193 e~qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHe  229 (426)
T KOG2008|consen  193 EQQKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHE  229 (426)
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            3334444444444444333333344555555555554

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=96.04  E-value=0.14  Score=47.43  Aligned_cols=38  Identities=18%  Similarity=0.322  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       191 Le~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      ++.++++++++.+.+++|.++|..+.+.+..+..++..
T Consensus        96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~  133 (145)
T COG1730          96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ  133 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444443

>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6

Probab=96.00  E-value=1.8  Score=42.73  Aligned_cols=18  Identities=33%  Similarity=0.516  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010679          106 LQMRNLTEKIAKMEAELK  123 (504)
Q Consensus       106 ~eL~eL~eki~kLEaEL~  123 (504)
                      .++.++.+++.+++..+.
T Consensus        83 ~~laev~eki~~l~~~~A  100 (218)
T cd07662          83 LKVSELFDKTRKIEARVA  100 (218)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            345566666666666554

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays

>COG5293 Predicted ATPase [General function prediction only]

Probab=96.00  E-value=1.1  Score=48.49  Aligned_cols=30  Identities=13%  Similarity=0.077  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010679          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLE  203 (504)
Q Consensus       174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~e  203 (504)
                      ..++..|..|+-+++.+|..++..++.+.+
T Consensus       378 ~e~y~~l~ee~~~~~~elae~~~rie~l~k  407 (591)
T COG5293         378 FEKYQTLCEEIIALRGELAELEYRIEPLRK  407 (591)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhhHHHH
Confidence            345677778888888888888777776654

>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A

Probab=95.99  E-value=1.6  Score=44.29  Aligned_cols=32  Identities=19%  Similarity=0.230  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          197 FYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       197 ~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      .+.++...+.+-.+=...|...+.++..++..
T Consensus       256 ~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~  287 (296)
T PF13949_consen  256 AYKELSSNLEEGLKFYNDLLEILNKLQQKVED  287 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444455555555555554

>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised

Probab=95.99  E-value=0.0018  Score=70.58  Aligned_cols=26  Identities=12%  Similarity=0.262  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           72 LAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        72 Le~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      .+++|..|+++|....+.|++.+.+|
T Consensus       374 YEqEI~~LkErL~~S~rkLeEyErrL  399 (495)
T PF12004_consen  374 YEQEIQSLKERLRMSHRKLEEYERRL  399 (495)
T ss_dssp             --------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555544444444444444

This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=95.97  E-value=0.18  Score=52.12  Aligned_cols=26  Identities=4%  Similarity=0.111  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          205 LQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       205 lqemek~L~sme~EiekLraELekle  230 (504)
                      +..++.++...+.++++++..++++.
T Consensus       180 ~~~~~~~l~~~~~~l~~a~~~l~~~~  205 (331)
T PRK03598        180 IAQAKASLAQAQAALAQAELNLQDTE  205 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence            34445555555666667777776654

>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis

Probab=95.96  E-value=2  Score=43.45  Aligned_cols=48  Identities=13%  Similarity=0.221  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      ..|-..++....|.+.+...+.++...+.+-.+.+..--.||..+..+
T Consensus        93 sklsaavenak~e~~~id~~na~i~k~lAeeNqKIq~gi~EL~Kl~~e  140 (353)
T PF01540_consen   93 SKLSAAVENAKNEKKAIDDKNAQIDKKLAEENQKIQNGIEELKKLSNE  140 (353)
T ss_pred             HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHhHH
Confidence            444444555555555454444444444444444444333344443333

M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=95.95  E-value=0.28  Score=50.77  Aligned_cols=54  Identities=15%  Similarity=0.156  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       176 EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      +++..+.+++.++.+++..+..+..+....  ...++..++.+++.++.++++++.
T Consensus       146 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~l~~a~~  199 (331)
T PRK03598        146 DLENARSSRDQAQATLKSAQDKLSQYREGN--RPQDIAQAKASLAQAQAALAQAEL  199 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443333332211  224556666777777777766543

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=95.95  E-value=0.28  Score=46.35  Aligned_cols=65  Identities=12%  Similarity=0.136  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010679          132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKF  197 (504)
Q Consensus       132 LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~  197 (504)
                      +..|..++..+..+.+.|...+..++.+|..|..-+ .+++++.+|..|+.|+...+..|+..+..
T Consensus        81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g  145 (201)
T KOG4603|consen   81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAG  145 (201)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444444444444444444444443333222 13445555555555555555555554433

>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []

Probab=95.95  E-value=1.6  Score=41.52  Aligned_cols=7  Identities=29%  Similarity=0.662  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 010679          112 TEKIAKM  118 (504)
Q Consensus       112 ~eki~kL  118 (504)
                      .+++.+|
T Consensus        81 A~eir~L   87 (213)
T PF00015_consen   81 ADEIRKL   87 (213)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            3333333

Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.

>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]

Probab=95.94  E-value=0.26  Score=50.19  Aligned_cols=83  Identities=16%  Similarity=0.141  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh------HHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGT------YEYEKKFYND  200 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~e------Le~~kk~~~e  200 (504)
                      .+..+|..+..+...+..++.+++.+.+++...+......   |.++..||+.+++|+++--+.      +...++.+..
T Consensus       270 ~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~---L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsK  346 (384)
T KOG0972|consen  270 SLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTET---LDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSK  346 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH---HHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHH
Confidence            3445555555555555555555555555544444433333   344556777777777764432      4445555555


Q ss_pred             HHHHHHHHHHHH
Q 010679          201 HLESLQVMEKNY  212 (504)
Q Consensus       201 l~eqlqemek~L  212 (504)
                      |+++.+.|.-++
T Consensus       347 Lk~et~~mnv~i  358 (384)
T KOG0972|consen  347 LKEETQTMNVQI  358 (384)
T ss_pred             HHHHHHhhhhhe
Confidence            555555554443

>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []

Probab=95.92  E-value=0.94  Score=48.41  Aligned_cols=7  Identities=14%  Similarity=0.548  Sum_probs=3.3

Q ss_pred             CCCChHH
Q 010679           44 MMPPPEV   50 (504)
Q Consensus        44 ~~p~~~~   50 (504)
                      +.|+++.
T Consensus        13 lfp~e~S   19 (383)
T PF04100_consen   13 LFPDEQS   19 (383)
T ss_pred             hCCChHH
Confidence            4455543

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=95.91  E-value=0.2  Score=44.39  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       192 e~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      +.+++.++.+.+++.++++++..+..++++++..++.
T Consensus        90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~  126 (129)
T cd00890          90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ  126 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555666666666666666666666554

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]

Probab=95.91  E-value=4.6  Score=46.68  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010679          139 AQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       139 LqeL~aerqeL~aqvq~L~~EL  160 (504)
                      +.++..++++|+.+++.++..|
T Consensus       672 ~eel~Ke~kElq~rL~~q~Kki  693 (988)
T KOG2072|consen  672 IEELEKERKELQSRLQYQEKKI  693 (988)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            3444444455555544444444

>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

Probab=95.89  E-value=2.2  Score=42.79  Aligned_cols=15  Identities=13%  Similarity=0.091  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679          144 VAREELIAKVHQLTQ  158 (504)
Q Consensus       144 aerqeL~aqvq~L~~  158 (504)
                      ..+.++..=+..|+.
T Consensus       136 ~~Lke~~~Y~~slk~  150 (240)
T cd07667         136 PVLREYILYSESMKN  150 (240)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis

Probab=95.89  E-value=1.7  Score=43.10  Aligned_cols=48  Identities=19%  Similarity=0.194  Sum_probs=32.5

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       183 ELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      |...+|..+-.++..+-.+...++-.-+.-.+|-.|+.-|+.-++.+.
T Consensus       174 ek~alR~aLiEER~Rfc~Fvs~l~pVl~~e~~ml~E~~hl~~~~~~l~  221 (231)
T cd07643         174 EKKAVRNALIEERGRFCTFVSFLKPVLDEEISMLGEVTHLQTIMEDLA  221 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            334566666667777777777776666666677788877777776654

The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate

>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=3.5  Score=45.43  Aligned_cols=38  Identities=26%  Similarity=0.310  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAA   85 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~   85 (504)
                      ...+.+.|..+...+.++...++++......|...+..
T Consensus       276 f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~  313 (503)
T KOG2273|consen  276 FTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAE  313 (503)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667777777777777766666655555555444443

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=95.87  E-value=1.8  Score=41.50  Aligned_cols=52  Identities=6%  Similarity=0.015  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      +..--..|+.|+.++-.+.....-.+..++.+|.+|..-+.+-.-+....+.
T Consensus       115 ~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaq  166 (178)
T PF14073_consen  115 LQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQ  166 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333355566666666666666666667777777776655554444444433

>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6

Probab=95.86  E-value=0.35  Score=52.23  Aligned_cols=17  Identities=29%  Similarity=0.157  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679           59 HVEMQKLATENQRLAAT   75 (504)
Q Consensus        59 ~eEIq~Le~e~qrLe~q   75 (504)
                      ..||+.|..++.-|..-
T Consensus       150 ~~Ev~~LRreLavLRQl  166 (424)
T PF03915_consen  150 LKEVQSLRRELAVLRQL  166 (424)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44555555444444333

In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.86  E-value=2.8  Score=47.23  Aligned_cols=7  Identities=0%  Similarity=0.387  Sum_probs=3.0

Q ss_pred             HHHHHHH
Q 010679           50 VMEQKIA   56 (504)
Q Consensus        50 ~LEqeLe   56 (504)
                      .|.+++.
T Consensus       484 ~l~EQmS  490 (948)
T KOG0577|consen  484 ELREQMS  490 (948)
T ss_pred             HHHHHHH
Confidence            3444444

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=95.83  E-value=2.2  Score=42.26  Aligned_cols=162  Identities=13%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010679           58 QHVEMQKLATENQRLAATHGTLRQELA-AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSK  136 (504)
Q Consensus        58 ~~eEIq~Le~e~qrLe~qi~~LkqELa-~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr  136 (504)
                      +..-...+..+..++...|..+.+.|. .+...|..+...+.......+..+..+..........   ++..+...+.+-
T Consensus        58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~---l~KaK~~Y~~~c  134 (236)
T cd07651          58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKY---LEKAREKYEADC  134 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHH
Q 010679          137 TEAQNLVVAREELI-AKVHQLTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK-NYI  213 (504)
Q Consensus       137 ~ELqeL~aerqeL~-aqvq~L~~ELq~l~~elqql~~L~~E-IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek-~L~  213 (504)
                      .++..++.+...+. .+++.++..+.+...++......... +..+..-......++...=..+.++++..-..-+ .|.
T Consensus       135 ~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~  214 (236)
T cd07651         135 SKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCW  214 (236)
T ss_pred             HhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHH
Q 010679          214 TMATEVEKL  222 (504)
Q Consensus       214 sme~EiekL  222 (504)
                      ....-|+..
T Consensus       215 ~~a~~~s~~  223 (236)
T cd07651         215 TFANNISTL  223 (236)
T ss_pred             HHHHHHHHH

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]

Probab=95.81  E-value=2.2  Score=42.10  Aligned_cols=178  Identities=12%  Similarity=0.114  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 010679           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE-----LQILHGQIGGMKSERELQMRNLTEKIAKMEAE  121 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqE-----L~~L~~~L~~l~ae~E~eL~eL~eki~kLEaE  121 (504)
                      ....+.+=|..+..++..+..++.+|..++..|+++|......     +.........++.....+...+.+++.+++..
T Consensus        24 ~~eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~~~a~~  103 (212)
T COG3599          24 DEEEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRASAQAQR  103 (212)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010679          122 LKTAEPVKLE-----FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK  196 (504)
Q Consensus       122 L~ele~LkaE-----LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk  196 (504)
                      +-......++     . .+..++..++.+.+....++..+....-...........+....+....+++......+....
T Consensus       104 v~~~a~~~a~~~~~~a-~~~~e~e~~~~q~~~~~~rl~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (212)
T COG3599         104 VFGKAQYKADRYLEDA-KIAQELEDLKRQAQVERQRLRSDIEAQLASAKQEDWDEILRSTVDEVEAANEEAERLADAAQA  182 (212)
T ss_pred             HHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHhhhhHHHHHHHHHHhhccccccc


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       197 ~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      ..+.+.      ..-+.....++..++.-|..+.+
T Consensus       183 ~~e~~~------~e~~~~~~~~l~e~e~~~s~t~~  211 (212)
T COG3599         183 DADRLR------DECDIYVDTKLAELETRLSGTRR  211 (212)
T ss_pred             chhhhh------hhhHHHHHHHHHHHHHHHhhhcc

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=95.80  E-value=0.16  Score=43.42  Aligned_cols=83  Identities=23%  Similarity=0.301  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh-------------------HHHHHHHHHHHHHHHHH
Q 010679          147 EELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGT-------------------YEYEKKFYNDHLESLQV  207 (504)
Q Consensus       147 qeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~e-------------------Le~~kk~~~el~eqlqe  207 (504)
                      +++..+++.|..++..+...+..+.....+++....||..+..+                   ++.+++....+.+.+..
T Consensus         1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~   80 (106)
T PF01920_consen    1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK   80 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Q 010679          208 MEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       208 mek~L~sme~EiekLraELekl  229 (504)
                      +++++..+..++++++.+|..+
T Consensus        81 l~~~~~~l~~~l~~~~~~l~~~  102 (106)
T PF01920_consen   81 LEKQLKYLEKKLKELKKKLYEL  102 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=95.80  E-value=2  Score=41.53  Aligned_cols=156  Identities=13%  Similarity=0.076  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH
Q 010679           66 ATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE-PVKLEFQKSKTEAQNLVV  144 (504)
Q Consensus        66 e~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele-~LkaELeqLr~ELqeL~a  144 (504)
                      ..+.-.|.+.++.+-++..+-..-|--+...|      ...-+.+|-.++.--..|...+- .+..++..+-..+..+..
T Consensus        32 R~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~l------y~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~  105 (189)
T PF10211_consen   32 RQDVIQLQEWLDKMLQQRQARETGICPVREEL------YSQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYE  105 (189)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccccHHHHHH------HHHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 010679          145 AREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYND-HLESLQVMEKNYITMATEVEKLR  223 (504)
Q Consensus       145 erqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~e-l~eqlqemek~L~sme~EiekLr  223 (504)
                      .......+........  ...-..++..+..+++.|+.++..++..++...+...+ .....+.+..+++.+.+..++|+
T Consensus       106 s~~~f~~rk~l~~e~~--~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~  183 (189)
T PF10211_consen  106 SSIAFGMRKALQAEQG--KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLK  183 (189)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHhc
Q 010679          224 AELMNA  229 (504)
Q Consensus       224 aELekl  229 (504)
                      .+|+.+
T Consensus       184 ~~l~~~  189 (189)
T PF10211_consen  184 AQLEQI  189 (189)
T ss_pred             HHHhcC

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF15233 SYCE1: Synaptonemal complex central element protein 1

Probab=95.79  E-value=0.87  Score=41.22  Aligned_cols=120  Identities=17%  Similarity=0.195  Sum_probs=0.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA  125 (504)
Q Consensus        46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~el  125 (504)
                      |.++.|-.+|..+.+--.....++.....-.++|+++|+.+..|..+|+..+..    ++.-++.|+-.....+.+....
T Consensus         6 P~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnk----Kqe~l~iLqlhcqeke~eaqrq   81 (134)
T PF15233_consen    6 PQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNK----KQETLRILQLHCQEKESEAQRQ   81 (134)
T ss_pred             chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhh


Q ss_pred             hHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010679          126 EPV------KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI  170 (504)
Q Consensus       126 e~L------kaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql  170 (504)
                      ..+      +.+++..-.++......+=++-. -+.|..+|..+..-.+++
T Consensus        82 ~~~~~eck~R~~fe~qLE~lm~qHKdLwefh~-~erLa~EI~~l~~sKEQL  131 (134)
T PF15233_consen   82 QTLLQECKLRLDFEEQLEDLMGQHKDLWEFHM-PERLAREICALESSKEQL  131 (134)
T ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhHHHH

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=95.78  E-value=0.36  Score=41.89  Aligned_cols=95  Identities=18%  Similarity=0.218  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010679          108 MRNLTEKIAKMEAELKTAE---PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEY  184 (504)
Q Consensus       108 L~eL~eki~kLEaEL~ele---~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqEL  184 (504)
                      ++-+.+..+.+.+.+....   ..-.+|..+-.+..++..++++|.++...+..+|..+.........+..+...++.++
T Consensus         4 ik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i   83 (108)
T PF02403_consen    4 IKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEI   83 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHH


Q ss_pred             HHHHhhHHHHHHHHHHHH
Q 010679          185 HHCRGTYEYEKKFYNDHL  202 (504)
Q Consensus       185 q~LR~eLe~~kk~~~el~  202 (504)
                      ..++.++..+...+..+.
T Consensus        84 ~~le~~~~~~e~~l~~~l  101 (108)
T PF02403_consen   84 KELEEQLKELEEELNELL  101 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PRK12705 hypothetical protein; Provisional

Probab=95.78  E-value=2.6  Score=46.68  Aligned_cols=160  Identities=14%  Similarity=0.113  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHH
Q 010679           55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE-PVKLEFQ  133 (504)
Q Consensus        55 Le~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele-~LkaELe  133 (504)
                      +-..-.+.+.+..+..++..+-+.--+.+.  ++.+-..+.++...+.+.+.++++...++.+.+..+.+.+ .+..+.+
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~   98 (508)
T PRK12705         21 LVVLLKKRQRLAKEAERILQEAQKEAEEKL--EAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAE   98 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI  213 (504)
Q Consensus       134 qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~  213 (504)
                      .+...-.++..+.++|..+.+.|...+++...+++++..+..+ ++.+.=++.++.++..+...  .+.+...++..+.+
T Consensus        99 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~~-eak~~l~~~~~~~~~~e~~~--~i~~~e~~~~~~a~  175 (508)
T PRK12705         99 KLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPE-QARKLLLKLLDAELEEEKAQ--RVKKIEEEADLEAE  175 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH


Q ss_pred             HHHHHH
Q 010679          214 TMATEV  219 (504)
Q Consensus       214 sme~Ei  219 (504)
                      ...++|
T Consensus       176 ~~A~~i  181 (508)
T PRK12705        176 RKAQNI  181 (508)
T ss_pred             HHHHHH

>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

Probab=95.77  E-value=0.51  Score=53.86  Aligned_cols=151  Identities=11%  Similarity=0.122  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010679           58 QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKT  137 (504)
Q Consensus        58 ~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~  137 (504)
                      .+.++..++.++.++.++...+..++..+.+++..+..++....+.++.++.++..++..|++.+.++..-+.+..-.+.
T Consensus       344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEa  423 (656)
T PRK06975        344 LNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEV  423 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHH


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHH
Q 010679          138 E-AQNLVVAREELIAKVHQLTQDLQRAHTDVQQI--PALLSELESLRQEYHHCRG----TYEYEKKFYNDHLESLQVM  208 (504)
Q Consensus       138 E-LqeL~aerqeL~aqvq~L~~ELq~l~~elqql--~~L~~EIeaLrqELq~LR~----eLe~~kk~~~el~eqlqem  208 (504)
                      | +..+-.++-.|...++....-|+.....+.++  +.+..-..++.++|+.|+.    ++.-+--++..+.+++.++
T Consensus       424 e~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~~~P~l~~lR~Ala~Di~~L~~~~~~D~~gl~l~L~~l~~~vd~L  501 (656)
T PRK06975        424 EQMLSSASQQLQLTGNVQLALIALQNADARLATSDSPQAVAVRKAIAQDIERLKAAPSADLTGLAIKLDDAIAKIDAL  501 (656)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHhhC

>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like

Probab=95.76  E-value=1.9  Score=43.61  Aligned_cols=160  Identities=15%  Similarity=0.148  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010679           63 QKLATENQRLAATHGTLRQELA-AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQN  141 (504)
Q Consensus        63 q~Le~e~qrLe~qi~~LkqELa-~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqe  141 (504)
                      ..+..+...+..+++.+-.+|. .+-..|..+..+++..+...-.....|+..+   +..+..++..+...+....+.+.
T Consensus        69 ~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l---~~~~~~leksKk~Y~~acke~E~  145 (252)
T cd07675          69 YNILNELNDYAGQREVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYL---DMCWKQMDNSKKKFERECREAEK  145 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 010679          142 LVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKF-----YNDHLESLQVMEKNYITMA  216 (504)
Q Consensus       142 L~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~-----~~el~eqlqemek~L~sme  216 (504)
                      .+............-..++.+++..+   ..-..+.+..+.+....-+.+..++..     +.++.+.+|+|++.....-
T Consensus       146 A~~k~~ka~~d~~~tk~~~eK~k~~~---~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l  222 (252)
T cd07675         146 AQQSYERLDNDTNATKSDVEKAKQQL---NLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKL  222 (252)
T ss_pred             HHHHHHhcccCcccCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHh
Q 010679          217 TEVEKLRAELMN  228 (504)
Q Consensus       217 ~EiekLraELek  228 (504)
                      .++-..-++|++
T Consensus       223 ~e~~~~~~~~E~  234 (252)
T cd07675         223 SECYRGFADSER  234 (252)
T ss_pred             HHHHHHHHHHHH

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]

Probab=95.75  E-value=2.4  Score=42.99  Aligned_cols=152  Identities=16%  Similarity=0.152  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHH
Q 010679           73 AATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE---PVKLEFQKSKTEAQNLVVAREEL  149 (504)
Q Consensus        73 e~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele---~LkaELeqLr~ELqeL~aerqeL  149 (504)
                      +.++...+..|...-+||...+.-..++-..--.-...|..++--.+.-...+.   .|..--..++..|+.+..+.+.+
T Consensus        45 ~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~  124 (338)
T KOG3647|consen   45 EDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSS  124 (338)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          150 IAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       150 ~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe  227 (504)
                      .+++.....+...|..+   |+.-+.|++.+++.++.|..-.-....+++..+++++++-.....--+.+.-|+.+++
T Consensus       125 ~~~Lnnvasdea~L~~K---ierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qld  199 (338)
T KOG3647|consen  125 RAQLNNVASDEAALGSK---IERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLD  199 (338)
T ss_pred             HHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.75  E-value=2.2  Score=48.58  Aligned_cols=179  Identities=15%  Similarity=0.102  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH--------HHHHHHHHHHHHHHHHHHHHHH
Q 010679           53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS--------ERELQMRNLTEKIAKMEAELKT  124 (504)
Q Consensus        53 qeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a--------e~E~eL~eL~eki~kLEaEL~e  124 (504)
                      +.|+-..+.+..+..++.-|.- +..++++-+..++-++.++.-.+.+..        +.+..++.+..+..+++.+++.
T Consensus       242 ~DLe~A~e~V~~~K~Qi~~L~P-LV~~~~r~e~~~~S~~~~~A~k~aL~~~~~~iK~E~~~~~v~~~t~E~tQ~~~~ve~  320 (1104)
T COG4913         242 QDLEGAYEQVEDIKRQIHTLDP-LVQLKNRREKAQQSKDHANALKKALPTVGNRIKKEEQETLVRQFTVEQTQAKSKVES  320 (1104)
T ss_pred             HhHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             Hh----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--------HHHHHHHHHHHhhH
Q 010679          125 AE----PVKLEFQKSKTEAQNLV-VAREELIAKVHQLTQDLQRAHTDVQQIPALLSEL--------ESLRQEYHHCRGTY  191 (504)
Q Consensus       125 le----~LkaELeqLr~ELqeL~-aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EI--------eaLrqELq~LR~eL  191 (504)
                      ++    ....+...++..+.++. .+...|.++++.++............+..|.+.|        +.+-..-+..+...
T Consensus       321 ~~~e~~~A~~~~T~~~~~vk~~~G~~~~~LsA~~E~~~~~r~~~~~~~~~~~aLv~~l~~aAP~~A~~~L~~~~~~~~~~  400 (1104)
T COG4913         321 AKIETDRAREMETLAHDNVKQIVGAQHGILSAKREGAVDKRRTISTARAGLDALVKGLGGAAPESAEELLELNNAARLTV  400 (1104)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCCcccHHHHHHHHHHHHHhH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010679          192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV  232 (504)
Q Consensus       192 e~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~  232 (504)
                      +++...++.|....++-.+.+-....|...+-.||..|.+.
T Consensus       401 dE~~AA~E~L~~~~~~~~~~~~~A~d~~~a~~~El~SL~k~  441 (1104)
T COG4913         401 DEYPAAREALESAGQRNVEDRTRAVDEFKAADQELSSLSKG  441 (1104)
T ss_pred             hhhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhcc

>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.74  E-value=3.8  Score=44.33  Aligned_cols=181  Identities=12%  Similarity=0.057  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV  128 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~L  128 (504)
                      ..+.+.....+..|-.-..+.++...+..+-...-..  .+|.++++++...+.+......+......  .+-+.++..+
T Consensus        27 ~~~~~i~q~~q~~~l~~~ee~e~~~~~~~A~~~~~~k--kel~~~~~q~~~~k~~~~~~~~eqi~~~~--~~~q~e~~~~  102 (438)
T COG4487          27 ARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKK--KELSQLEEQLINQKKEQKNLFNEQIKQFE--LALQDEIAKL  102 (438)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH


Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679          129 KLEFQKS---KTEAQNLVVAREELIAKVHQ-LTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES  204 (504)
Q Consensus       129 kaELeqL---r~ELqeL~aerqeL~aqvq~-L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq  204 (504)
                      ...+..-   ..++..+..++.++..+++. |+..++.++.+......+...--....+++.-   |+.++.......++
T Consensus       103 ~~~~~~N~e~dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~s---Le~eR~k~~~ql~~  179 (438)
T COG4487         103 EALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEES---LELEREKFEEQLHE  179 (438)
T ss_pred             HHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 010679          205 LQVMEKNYITMATEVEKLRAELMNAPNVDRRAA  237 (504)
Q Consensus       205 lqemek~L~sme~EiekLraELekle~~~~~~~  237 (504)
                      -. ..-+....+..++.+.++++++..+++|.+
T Consensus       180 ~~-~~~e~~e~~e~~~s~~~~~k~~k~~ae~~~  211 (438)
T COG4487         180 AN-LDLEFKENEEQRESKWAILKKLKRRAELGS  211 (438)
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins

Probab=95.72  E-value=3.2  Score=43.43  Aligned_cols=180  Identities=14%  Similarity=0.094  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhc------cchHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE-LQILHGQIG------GMKSERELQMRNLTEKIAKMEAE  121 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqE-L~~L~~~L~------~l~ae~E~eL~eL~eki~kLEaE  121 (504)
                      ..|...+..+....+.+.....+|...+...+..++.++.+ +..+.....      ....+++..+..|..++..|+..
T Consensus       112 ~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d~~~~q~~~~~~~~l~~leqRi~DL~~~  191 (333)
T PF05816_consen  112 DELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGDQMDAQELADLEQALFRLEQRIQDLQLS  191 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHH--HHHHHhhhhhhH
Q 010679          122 LKTAEPVKLEFQKSKTEAQNLVVAR---------------------------EELIAKVHQLTQDL--QRAHTDVQQIPA  172 (504)
Q Consensus       122 L~ele~LkaELeqLr~ELqeL~aer---------------------------qeL~aqvq~L~~EL--q~l~~elqql~~  172 (504)
                      +.-...---.+.-++.--..|...+                           .++...+...+.+|  ...+.-.+...+
T Consensus       192 ~~va~Q~~pqir~iq~nN~~Li~ki~~a~~~TIP~~k~~~~ial~l~~Qk~a~~~~~av~~tTnell~~nAe~lk~~~~~  271 (333)
T PF05816_consen  192 RQVAIQTAPQIRMIQNNNRELIEKIQSAITTTIPAWKNQLAIALALQRQKKALDAQQAVNDTTNELLRRNAEMLKQNSVE  271 (333)
T ss_pred             HHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      ..++.+.---.++.|+...+.+-..+++...-.++...+......++.+++.++++
T Consensus       272 iak~~~~~~vdiEtL~~~~~~li~ti~e~~~i~~e~~~~r~~~~~~l~~l~~~lk~  327 (333)
T PF05816_consen  272 IAKEAERPVVDIETLKKAFQNLIETIEETDQIQEEGREKRAQAEQELEQLEEELKQ  327 (333)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].

>PRK15374 pathogenicity island 1 effector protein SipB; Provisional

Probab=95.72  E-value=4.4  Score=44.89  Aligned_cols=180  Identities=9%  Similarity=0.030  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH----
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK----  123 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~----  123 (504)
                      .++|..+|..-+.-++--.....+|.+.++..-.+-....+.|+.....+..    .+..+..++.++..++.++.    
T Consensus       101 l~~l~s~l~~~na~~~ga~~~~~~lS~~ledaL~aaq~~ad~l~q~~~~~~~----Aq~~l~~aq~~l~~lq~~a~~~~P  176 (593)
T PRK15374        101 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDT----AKSVYDAAEKKLTQAQNKLQSLDP  176 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHhhcCC


Q ss_pred             ---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhHHHHHH-----HHHHHHHHHHHhhHHHH
Q 010679          124 ---TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL-QRAHTDVQQIPALLSEL-----ESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       124 ---ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~EL-q~l~~elqql~~L~~EI-----eaLrqELq~LR~eLe~~  194 (504)
                         .+.+.+.++++...++.+...........+...+..- .+.+.....+...+..+     ..++++.++....+..+
T Consensus       177 ~sp~l~~a~~av~~a~~~a~~a~~~~~~~v~a~~~a~~~a~~ka~~~i~slt~~Q~~~~~~~~i~~~~~~~~~l~~~a~L  256 (593)
T PRK15374        177 ADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGTANAASQNQVSQGEQDNLSNVARL  256 (593)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccHHhhhhhhhhHHHHHHhhhhhhhhHHHH


Q ss_pred             H------------------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccc
Q 010679          195 K------------------KFYNDHLESLQVM-EKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       195 k------------------k~~~el~eqlqem-ek~L~sme~EiekLraELekle~  231 (504)
                      .                  +...++.+++++. ++++++..+|.+...++.+.+.+
T Consensus       257 T~LmA~l~eLi~~~s~e~lk~~~el~~klsea~~kd~ekKA~Eyee~vrKAEE~qK  312 (593)
T PRK15374        257 TMLMAMFIEIVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEFQEETRKAEETNR  312 (593)
T ss_pred             HHHHHHHHHHHhhhhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

Probab=95.71  E-value=1.5  Score=47.90  Aligned_cols=153  Identities=16%  Similarity=0.188  Sum_probs=0.0

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010679           43 DMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL  122 (504)
Q Consensus        43 ~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL  122 (504)
                      +|.-+...+-..+..+..    +..+...+......+++....+.+++.++...+.........++..+.+.+.++..+.
T Consensus        32 ~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~  107 (448)
T COG1322          32 QMLGELAAVLEQLLLLLA----FRAEAEQLRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEF  107 (448)
T ss_pred             hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHh-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010679          123 KTAE-PVKLEFQKSKTEAQ--NLVVAREELIAKVHQLTQDLQR-AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFY  198 (504)
Q Consensus       123 ~ele-~LkaELeqLr~ELq--eL~aerqeL~aqvq~L~~ELq~-l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~  198 (504)
                      .++. .+..+..+...++.  .+.....=+....+.+++.++. ..+..++...+..+|..+..+++.+-++...+++.+
T Consensus       108 ~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~L  187 (448)
T COG1322         108 QELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAAL  187 (448)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             H
Q 010679          199 N  199 (504)
Q Consensus       199 ~  199 (504)
                      .
T Consensus       188 k  188 (448)
T COG1322         188 K  188 (448)
T ss_pred             c

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=95.71  E-value=0.54  Score=45.49  Aligned_cols=123  Identities=18%  Similarity=0.179  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010679          108 MRNLTEKIAKM-----EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQ  182 (504)
Q Consensus       108 L~eL~eki~kL-----EaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrq  182 (504)
                      ...|.+++.++     ...+......-.+|+..=-++.-++..+.+|..-......-+...+.-.+++.+...+...+..
T Consensus        52 f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~  131 (190)
T PF05266_consen   52 FANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELES  131 (190)
T ss_pred             HHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHH


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       183 ELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      ++.+++..|..++.....+.+..++..+.+..+..+++++..++++++
T Consensus       132 ~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e  179 (190)
T PF05266_consen  132 EIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE  179 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=95.71  E-value=0.017  Score=61.27  Aligned_cols=155  Identities=14%  Similarity=0.201  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           80 RQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQD  159 (504)
Q Consensus        80 kqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~E  159 (504)
                      ++++.....-+..++.-......++..+.+....++...+.++.+.  +..++..+....+....++.++...++.|..+
T Consensus        36 ~~~~~~~~~~~~~~E~~Kk~~~~qLrE~~et~~KE~~~~eKe~kE~--~~K~~~~~~e~~ek~~k~l~el~~~~~elkkE  113 (370)
T PF02994_consen   36 KQDSDLKSYLIMMLEDFKKDFKNQLREQDETPEKELKNKEKELKEN--IIKNLEVLKEEKEKSIKELNELKKRIKELKKE  113 (370)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccchHHHHHHHHhhhhhHHHHHHhhhhhhhhhhhhhhhhhHh--hhhhcccccchhhhhHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010679          160 LQRAHTDVQQIPALLSELESLRQEY-HHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA  236 (504)
Q Consensus       160 Lq~l~~elqql~~L~~EIeaLrqEL-q~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~~  236 (504)
                      +..++....++......+......+ ..+...++.+...+.++++.+.+++..+..+++++..+...|..++++.+|+
T Consensus       114 ie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRn  191 (370)
T PF02994_consen  114 IENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRN  191 (370)
T ss_dssp             ----H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCC

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=95.70  E-value=0.79  Score=48.22  Aligned_cols=168  Identities=10%  Similarity=0.103  Sum_probs=0.0

Q ss_pred             CCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010679           44 MMPPPEVMEQKIASQHV-EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL  122 (504)
Q Consensus        44 ~~p~~~~LEqeLe~~~e-EIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL  122 (504)
                      ++-++.+..+.-..... .|..+..+...--+++.++..+++.+.++..+++.+|+.    ++..+..+.+.+.-.+.++
T Consensus       115 LlyPVs~~r~dq~~kp~~~~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~----k~t~~~afn~tikife~q~  190 (464)
T KOG4637|consen  115 LLYPVSRYRQDQNVKPDFNINAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQM----KRTAIEAFNETIKIFEEQC  190 (464)
T ss_pred             eechHHHhhhccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHH


Q ss_pred             HHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010679          123 KTAEPVKLEFQKSKTEA----QNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFY  198 (504)
Q Consensus       123 ~ele~LkaELeqLr~EL----qeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~  198 (504)
                      ...+.+.++-...-...    -.-..++..+......++..|+++...+-++.+.++.+      ++.++.-.+.-..++
T Consensus       191 ~~~e~~~ka~~d~~~~eqG~qg~~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~------~q~~~~~~enr~~e~  264 (464)
T KOG4637|consen  191 GTQENLSKAYIDRFRREQGSQGNSEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKAL------IQALRSNSENRLCEL  264 (464)
T ss_pred             HHHHHHHHHHHhHHHHHhccCCchHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHH------HHHHhhhhhhhhHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010679          199 NDHLESLQVMEKNYITMATEVEK  221 (504)
Q Consensus       199 ~el~eqlqemek~L~sme~Eiek  221 (504)
                      .++.+++.++...+..++....+
T Consensus       265 m~l~k~~nslkp~l~~lr~~~d~  287 (464)
T KOG4637|consen  265 MELDKAMNSLKPDLIQLRKIRDQ  287 (464)
T ss_pred             HHHHHHHhhcCchHHHHHHHHHH

>PF15358 TSKS: Testis-specific serine kinase substrate

Probab=95.69  E-value=1.9  Score=46.00  Aligned_cols=182  Identities=19%  Similarity=0.190  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHHHHHHHHH
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELKT  124 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a---e~E~eL~eL~eki~kLEaEL~e  124 (504)
                      +..|+++-+..++-|+.|..+..-|.+.++.-++|-++++.-..+|+........   +.+.+...|+....-||++|+-
T Consensus       127 ItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~  206 (558)
T PF15358_consen  127 ITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRY  206 (558)
T ss_pred             hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHH


Q ss_pred             Hh---------HHHHHHHHHHHH--------------------------------------------------------H
Q 010679          125 AE---------PVKLEFQKSKTE--------------------------------------------------------A  139 (504)
Q Consensus       125 le---------~LkaELeqLr~E--------------------------------------------------------L  139 (504)
                      +.         ..+.|+++|+..                                                        +
T Consensus       207 lq~qLqdE~prrqe~e~qELeqkleagls~~~l~p~~~~~g~~~p~~s~~~p~~~~~l~~~~~~~~~rage~~~~seq~l  286 (558)
T PF15358_consen  207 LQQQLQDETPRRQEAEWQELEQKLEAGLSRSGLPPTADSTGCPGPPGSPEEPPRPRNLAPAGWGGGPRAGEGPELSEQEL  286 (558)
T ss_pred             HHHHhcccCcchhhhhHHHHHHHHhhhhhhcCCCccccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCccccHHhh


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          140 QNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE----LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM  215 (504)
Q Consensus       140 qeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~E----IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sm  215 (504)
                      +++-.-+.+|..+|..|...-.+.+-..+++-.|...    ++.+-.+-++.+.+-......+.+|..+..++-.-.+.-
T Consensus       287 qk~~s~LEelRrevssLtarw~qEega~qEaLrlLgglggRldgflgqWERaQ~eq~q~ar~lqeLR~~~delct~vers  366 (558)
T PF15358_consen  287 QKVSSGLEELRREVSSLTARWHQEEGAVQEALRLLGGLGGRLDGFLGQWERAQREQAQTARGLQELRGRADELCTMVERS  366 (558)
T ss_pred             cccCccHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh


Q ss_pred             HHHHHHHHHHHHhc
Q 010679          216 ATEVEKLRAELMNA  229 (504)
Q Consensus       216 e~EiekLraELekl  229 (504)
                      .--+.+|+.+|+.+
T Consensus       367 avs~asLrseLegl  380 (558)
T PF15358_consen  367 AVSVASLRSELEGL  380 (558)
T ss_pred             HhHHHHHHHHhhcc

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=95.69  E-value=0.93  Score=38.76  Aligned_cols=110  Identities=13%  Similarity=0.123  Sum_probs=0.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010679          119 EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLT--QDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK  196 (504)
Q Consensus       119 EaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~--~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk  196 (504)
                      +.....+..+..++......|..|...+.++...+....  ..+..+..-..-+..+...|..++.++..++.+++..+.
T Consensus         1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~   80 (123)
T PF02050_consen    1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE   80 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          197 FYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       197 ~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      .+.+...+.+.+++-.+....+........+.
T Consensus        81 ~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq  112 (123)
T PF02050_consen   81 ELQEARRERKKLEKLKERRREEYQQEEERREQ  112 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=95.69  E-value=1.5  Score=42.43  Aligned_cols=126  Identities=16%  Similarity=0.160  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           83 LAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (504)
Q Consensus        83 La~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~  162 (504)
                      |...+.-++.|+.++.+.....+.+...|...-..++.-.......+.++..|+.-++..+..+.....-.+....+|..
T Consensus        62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e  141 (188)
T PF05335_consen   62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAE  141 (188)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010679          163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN  211 (504)
Q Consensus       163 l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~  211 (504)
                      ...-   |...+..++.|...|...|.+++..++.....-..-.+...+
T Consensus       142 K~qL---LeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~~AA~eAkq~  187 (188)
T PF05335_consen  142 KTQL---LEAAKRRVEELQRQLQAARADYEKTKKAAYKAACAAQEAKQK  187 (188)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=95.68  E-value=0.13  Score=50.48  Aligned_cols=96  Identities=13%  Similarity=0.162  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          135 SKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT  214 (504)
Q Consensus       135 Lr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~s  214 (504)
                      +-..+-.+..++..++.. ++++.+...++..+.....+..+.+.++++++.++.+++...+.++...++..++.++.+.
T Consensus       112 vI~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~  190 (216)
T KOG1962|consen  112 VIRRLHTLLRELATLRAN-EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG  190 (216)
T ss_pred             HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHhccc
Q 010679          215 MATEVEKLRAELMNAPN  231 (504)
Q Consensus       215 me~EiekLraELekle~  231 (504)
                      +..|.++|-+|-+++++
T Consensus       191 ~~~EydrLlee~~~Lq~  207 (216)
T KOG1962|consen  191 LQDEYDRLLEEYSKLQE  207 (216)
T ss_pred             cccHHHHHHHHHHHHHH

>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit

Probab=95.67  E-value=0.089  Score=49.13  Aligned_cols=147  Identities=15%  Similarity=0.140  Sum_probs=0.0

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 010679           39 FPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKM  118 (504)
Q Consensus        39 ~~~~~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kL  118 (504)
                      |.=+..+|......-.++.+......|+..+.-...++..|+.++......+++....|..++...+...+++.++..++
T Consensus         6 l~~~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~   85 (160)
T PF13094_consen    6 LARLPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA   85 (160)
T ss_pred             CCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 010679          119 EAELKTAEPVKLEFQKSKTEAQ-------NLVVA-REELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYH  185 (504)
Q Consensus       119 EaEL~ele~LkaELeqLr~ELq-------eL~ae-rqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq  185 (504)
                      ...+........+...+.....       ..... -.++..-+.+|...|..++...+++..+...|+.++..|+
T Consensus        86 ~~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~~~Ld  160 (160)
T PF13094_consen   86 HPVLQLDDSGVLELPELPQKSLLEASESRFAPTLCDEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSYAALD  160 (160)
T ss_pred             chhhccccccccccccccccccccccccccCcccchHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=95.66  E-value=4  Score=44.12  Aligned_cols=182  Identities=13%  Similarity=0.093  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELKTA  125 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~a---e~E~eL~eL~eki~kLEaEL~el  125 (504)
                      +.|.-+|+..+.-..+++.++..-..--++|+.-|..+-.=-.++-.+-.+++.   ++-..-+.+++-|..++....+.
T Consensus       298 eeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakA  377 (488)
T PF06548_consen  298 EELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKA  377 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010679          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL  205 (504)
Q Consensus       126 e~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eql  205 (504)
                      -.--.+..-...-..++...+.+-+.++..|+.+-..|+..+..-.+..+---+|--.|.+++......++.....++..
T Consensus       378 g~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~  457 (488)
T PF06548_consen  378 GVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQEN  457 (488)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHhcc
Q 010679          206 QVMEKNYITMAT----EVEKLRAELMNAP  230 (504)
Q Consensus       206 qemek~L~sme~----EiekLraELekle  230 (504)
                      ..+.++++.|.+    ||..|+.-|+..+
T Consensus       458 ek~~kqiekLK~kh~~Ei~t~kq~laes~  486 (488)
T PF06548_consen  458 EKAKKQIEKLKRKHKMEISTMKQYLAESR  486 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.81  Score=40.30  Aligned_cols=108  Identities=14%  Similarity=0.096  Sum_probs=0.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-----HHHHHHHHHHHHhhHHHH
Q 010679          120 AELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE-----LESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       120 aEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~E-----IeaLrqELq~LR~eLe~~  194 (504)
                      +..++++.+-..+..|+.++.+....++.|+.++++-+..+..+..-......-+--     -.++.+-....+..|++.
T Consensus         2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI   81 (120)
T KOG3478|consen    2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI   81 (120)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       195 kk~~~el~eqlqemek~L~sme~EiekLraELe  227 (504)
                      .+++..++.++.++++++..++..+.+++....
T Consensus        82 ~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q  114 (120)
T KOG3478|consen   82 SKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ  114 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.63  E-value=3.1  Score=42.50  Aligned_cols=185  Identities=13%  Similarity=0.107  Sum_probs=0.0

Q ss_pred             CCCCCChHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 010679           42 FDMMPPPEVMEQKIASQHVEMQ--------------------KLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK  101 (504)
Q Consensus        42 ~~~~p~~~~LEqeLe~~~eEIq--------------------~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~  101 (504)
                      .+-......+.++|......|.                    .|...+++......++.+++...-.++..+..  ....
T Consensus        13 ~~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~--~~~~   90 (269)
T KOG0811|consen   13 QEEPFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL--ESDL   90 (269)
T ss_pred             cCCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 010679          102 SERELQMRNLTEKIAKMEAELKTAEPVKLEFQ---------KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA  172 (504)
Q Consensus       102 ae~E~eL~eL~eki~kLEaEL~ele~LkaELe---------qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~  172 (504)
                      ..+..+++.|.+.....-++...+...-.+.+         ..-.++..-.....++.........+++....+.+.+..
T Consensus        91 ~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek~~~~a~~s~~s~~~~~~~~~~~~~~~~~~~~~~q~e~~~q~~e~~~~  170 (269)
T KOG0811|consen   91 RQLKIQLDKLVDEFSAALKEFQKVQRKSAEREKIPMVARGSQNSQQLDEESPRVDELSNNGSQSQQQLEEQAQDNEILEY  170 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccccccchhhhhhhhhhhhhhccchhhhhHHHHHHhhhhhhhh


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      ....|++-.++++.++++|-.++.-..+|-.-+.+-...+++++..|+.+..-++.
T Consensus       171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveq  226 (269)
T KOG0811|consen  171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQ  226 (269)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHH

>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []

Probab=95.59  E-value=2.5  Score=48.50  Aligned_cols=168  Identities=13%  Similarity=0.124  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH-----------
Q 010679           55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-----------  123 (504)
Q Consensus        55 Le~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~-----------  123 (504)
                      +..+.+++..++.   ++...+..+|..++.+-+=-+-.+..|..    ++.+|+++...+-+|+++.-           
T Consensus        93 ~~dl~e~vsqm~~---~vK~~L~~vK~qveiAmE~~EL~~~vlg~----l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~  165 (683)
T PF08580_consen   93 LFDLIEEVSQMEL---DVKKTLISVKKQVEIAMEWEELWNDVLGD----LDNEIEECIRLVFEMEEKRHSSPVRHGLPIF  165 (683)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCCcccCCCcc


Q ss_pred             HHhHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010679          124 TAEPVKLEF--------------------QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQE  183 (504)
Q Consensus       124 ele~LkaEL--------------------eqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqE  183 (504)
                      +|+.+-.++                    +.+..++-+|.+.++=|++-++-|=..|+..+...  ..-.-.-.+.|...
T Consensus       166 ~Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra--~~~fp~a~e~L~~r  243 (683)
T PF08580_consen  166 ELETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRA--ESIFPSACEELEDR  243 (683)
T ss_pred             cHHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHH


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhccc
Q 010679          184 YHHCRGTYEYEKKFYNDHLESLQVMEKNYI------TMATEVEKLRAELMNAPN  231 (504)
Q Consensus       184 Lq~LR~eLe~~kk~~~el~eqlqemek~L~------sme~EiekLraELekle~  231 (504)
                      .+.|....+.++++++.|++++-+-.+++.      ++.+.++.+++.|.++..
T Consensus       244 ~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~  297 (683)
T PF08580_consen  244 YERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQE  297 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc

KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=95.59  E-value=0.032  Score=59.21  Aligned_cols=131  Identities=17%  Similarity=0.223  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           76 HGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQ  155 (504)
Q Consensus        76 i~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~  155 (504)
                      ...|++......+|+.....++      .+..++.+.......+.-++.+..+...+++++.++..+.....+...++..
T Consensus        57 ~~qLrE~~et~~KE~~~~eKe~------kE~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~  130 (370)
T PF02994_consen   57 KNQLREQDETPEKELKNKEKEL------KENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIEN  130 (370)
T ss_dssp             -------------------------------------------------------------------H------------
T ss_pred             HHHHHHhhhhhhhhhhhhhhhh------hHhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH


Q ss_pred             HHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010679          156 LTQDLQRA-HTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNY  212 (504)
Q Consensus       156 L~~ELq~l-~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L  212 (504)
                      +...+..+ ..-..++.++...|..+...++++.+.++.+.+.+..+.+.+.+++...
T Consensus       131 ~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs  188 (370)
T PF02994_consen  131 LKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS  188 (370)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=95.58  E-value=1.2  Score=41.28  Aligned_cols=116  Identities=16%  Similarity=0.225  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHhh
Q 010679          112 TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT-DVQQIPALLSELESLRQEYHHCRGT  190 (504)
Q Consensus       112 ~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~-elqql~~L~~EIeaLrqELq~LR~e  190 (504)
                      ...+..+.+.-.+++..+.++   +..++.....+.+-..++..+..+|..+.. -.+.+..++..|+.+..||.-|...
T Consensus        30 ~sals~f~AkEeeIErkKmeV---rekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~  106 (159)
T PF04949_consen   30 RSALSAFRAKEEEIERKKMEV---REKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQS  106 (159)
T ss_pred             HHHHHHHHhHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       191 Le~~kk~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      ++...+.+.+..+.+.+..+.-..+...|..|-.+-+.++
T Consensus       107 cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~r  146 (159)
T PF04949_consen  107 CQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLR  146 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

This entry represents proteins annotated as RAB6-interacting golgins.

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=95.56  E-value=1.1  Score=39.74  Aligned_cols=106  Identities=13%  Similarity=0.121  Sum_probs=0.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010679          124 TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTYEYEKKFYNDHL  202 (504)
Q Consensus       124 ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~E-IeaLrqELq~LR~eLe~~kk~~~el~  202 (504)
                      .+-..+.++..+...|.....+...+...+..-..+|......++.-...... |........++....+...+......
T Consensus         1 ~li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~   80 (126)
T PF13863_consen    1 ELIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKE   80 (126)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          203 ESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       203 eqlqemek~L~sme~EiekLraELekl  229 (504)
                      ..+..+...+..|..++.++...|..+
T Consensus        81 ~ei~~l~~~l~~l~~~~~k~e~~l~~~  107 (126)
T PF13863_consen   81 AEIKKLKAELEELKSEISKLEEKLEEY  107 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH

>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins

Probab=95.55  E-value=2.9  Score=42.08  Aligned_cols=174  Identities=14%  Similarity=0.134  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhhccch
Q 010679           49 EVMEQKIASQHVEMQKLAT---------ENQRLAATHGTLRQE------------------LAAAQHELQILHGQIGGMK  101 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~---------e~qrLe~qi~~LkqE------------------La~lqqEL~~L~~~L~~l~  101 (504)
                      ..||.+++..+.-++.+..         ...+.+..+..+-..                  +..+-.........|..++
T Consensus        18 ~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~rk~p~~~Lg~~M~~~g~~l~~~s~lg~~L~~~g~a~~~ia~~~   97 (244)
T cd07595          18 LQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLKKLPEYGLAQSMLESSKELPDDSLLGKVLKLCGEAQNTLAREL   97 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhccCcHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhh
Q 010679          102 SERELQMRN--LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELI---------AKVHQLTQDLQRAHTDVQQI  170 (504)
Q Consensus       102 ae~E~eL~e--L~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~---------aqvq~L~~ELq~l~~elqql  170 (504)
                      .+.+..+..  |.---.-++.++..+...+..|+..+-++...+...+...         .++..|+.++..++.+..+.
T Consensus        98 ~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~  177 (244)
T cd07595          98 VDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQC  177 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHH


Q ss_pred             hHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          171 PALLSE--LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL  222 (504)
Q Consensus       171 ~~L~~E--IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekL  222 (504)
                      .++...  .+-+..|.+-++.-++..+.+++..+..++.|++-+..|+..+...
T Consensus       178 ~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~~  231 (244)
T cd07595         178 RDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQS  231 (244)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and

>TIGR02231 conserved hypothetical protein

Probab=95.55  E-value=0.1  Score=57.78  Aligned_cols=93  Identities=12%  Similarity=0.126  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010679          137 TEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSEL--------ESLRQEYHHCRGTYEYEKKFYNDHLESLQVM  208 (504)
Q Consensus       137 ~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EI--------eaLrqELq~LR~eLe~~kk~~~el~eqlqem  208 (504)
                      .++.+|+.++.+|+.++..+..++..++..+.-|..+....        ......+.++.+.++...+++.++..++.++
T Consensus        71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (525)
T TIGR02231        71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREA  150 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q 010679          209 EKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       209 ek~L~sme~EiekLraELekl  229 (504)
                      +.++..++++|++|+.+|.++
T Consensus       151 ~~~~~~~~~~l~~l~~~l~~l  171 (525)
T TIGR02231       151 ERRIRELEKQLSELQNELNAL  171 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=95.55  E-value=1.3  Score=50.35  Aligned_cols=163  Identities=12%  Similarity=0.025  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVK  129 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~Lk  129 (504)
                      .+++-+..+++-...+......+..+++.|-..|..-.-.-..++.+.+.+....+.-+..|..+-.+..+|++.+....
T Consensus       851 k~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~q  930 (1259)
T KOG0163|consen  851 KTIEILSRLKEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQ  930 (1259)
T ss_pred             HHHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHH
Q 010679          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYH-HCRGTYEYEKKFYNDHLESLQVM  208 (504)
Q Consensus       130 aELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq-~LR~eLe~~kk~~~el~eqlqem  208 (504)
                      ..++.-+...+.-..++.+.+.+...-.+...+.+.+.++-.....+-..+..|++ +|..+.+.+-+....++++..+.
T Consensus       931 E~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~~~Eqer~D~ 1010 (1259)
T KOG0163|consen  931 ELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQNQLEQERRDH 1010 (1259)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH


Q ss_pred             HHHH
Q 010679          209 EKNY  212 (504)
Q Consensus       209 ek~L  212 (504)
                      +-.+
T Consensus      1011 ~la~ 1014 (1259)
T KOG0163|consen 1011 ELAL 1014 (1259)
T ss_pred             HHHH

>PF14817 HAUS5: HAUS augmin-like complex subunit 5

Probab=95.54  E-value=2.2  Score=48.50  Aligned_cols=167  Identities=16%  Similarity=0.143  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010679           62 MQKLATENQRLAATHGTLRQELAAAQHELQILHG---QIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE  138 (504)
Q Consensus        62 Iq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~---~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~E  138 (504)
                      ++.|+.--.+.+.+|..+-..|+ ...+.+.++.   .+......+.....-|++.-.....-+.+...+.++...+..+
T Consensus       255 L~AL~~la~~~~~~i~~~~~~id-~~~D~e~lr~~l~d~s~~~~~lpsv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~  333 (632)
T PF14817_consen  255 LQALEHLASRRKAEIRSETESID-VRADAEYLRNQLEDVSDESQALPSVHQLLQEQWAHVQQFLAEEDALNKEAQALSQR  333 (632)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-chhhHHHhhhccCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679          139 AQNLVVAREE------------LIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (504)
Q Consensus       139 LqeL~aerqe------------L~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq  206 (504)
                      +..+..++..            ++.++-.+...++.|..+.+++..+..+-..+..+|+...++|.+.+....+.+++++
T Consensus       334 L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr  413 (632)
T PF14817_consen  334 LQRLLEEIERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIR  413 (632)
T ss_pred             HHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Q 010679          207 VMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       207 emek~L~sme~EiekLraELekl  229 (504)
                      .+.+.-......+.+...|+..+
T Consensus       414 ~LiK~Nsaakt~L~q~~~E~~~~  436 (632)
T PF14817_consen  414 ALIKGNSAAKTQLEQSPAEAQEF  436 (632)
T ss_pred             HHHHhhHHHHHHHHhChHHHHHH

>PRK12705 hypothetical protein; Provisional

Probab=95.52  E-value=2.6  Score=46.72  Aligned_cols=162  Identities=11%  Similarity=0.098  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVK  129 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~Lk  129 (504)
                      ..++-+...+.+.+.+.      .+.+.+.++++...+.+++   .++...+.+.+..-..|..+...|+.....++..+
T Consensus        34 ~a~~~~~~a~~~a~~~~------~~~~~~~~~~~~~~~~~~e---~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~  104 (508)
T PRK12705         34 EAERILQEAQKEAEEKL------EAALLEAKELLLRERNQQR---QEARREREELQREEERLVQKEEQLDARAEKLDNLE  104 (508)
T ss_pred             HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010679          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVME  209 (504)
Q Consensus       130 aELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqeme  209 (504)
                      .+|++.+.+|.....++.++..+.....+++..+..+..+-.-+..--+.++.|...+-.+++..-+. ...++...-+.
T Consensus       105 ~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~~~-~a~~~A~~ii~  183 (508)
T PRK12705        105 NQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADL-EAERKAQNILA  183 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHH
Q 010679          210 KNYITMATEVEK  221 (504)
Q Consensus       210 k~L~sme~Eiek  221 (504)
                      ..++....+...
T Consensus       184 ~aiqr~a~~~~~  195 (508)
T PRK12705        184 QAMQRIASETAS  195 (508)
T ss_pred             HHHHHhccchhh

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.51  E-value=2.5  Score=43.13  Aligned_cols=171  Identities=14%  Similarity=0.170  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE---  126 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele---  126 (504)
                      .+.++|...+..+..+..+...+..++..+..     ..++..++..++.    +..+......+..++.....+.+   
T Consensus        55 ~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~-----~~~~~~~k~~~~k----L~~ef~~~l~efq~vQrk~ae~ek~~  125 (269)
T KOG0811|consen   55 ELRDKLHQERLNANQLVKDTSALLKEIDTLRL-----ESDLRQLKIQLDK----LVDEFSAALKEFQKVQRKSAEREKIP  125 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----hhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHhhccc


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 010679          127 ------PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYND  200 (504)
Q Consensus       127 ------~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~e  200 (504)
                            ....++.+-..+.............+++.-......+..++..+++-..+|..|+..|.++-+-++.+-.-..+
T Consensus       126 ~~a~~s~~s~~~~~~~~~~~~~~~~~~~~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~e  205 (269)
T KOG0811|consen  126 MVARGSQNSQQLDEESPRVDELSNNGSQSQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHE  205 (269)
T ss_pred             ccccccccchhhhhhhhhhhhhhccchhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          201 HLESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       201 l~eqlqemek~L~sme~EiekLraELekl  229 (504)
                      .-+.+..++.+++.....++....+|.++
T Consensus       206 QG~~VDsIe~nve~a~~nveqg~~~L~kA  234 (269)
T KOG0811|consen  206 QGELVDSIEANVENASVNVEQGTENLRKA  234 (269)
T ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHH

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=95.50  E-value=1.7  Score=39.87  Aligned_cols=139  Identities=14%  Similarity=0.167  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           81 QELAAAQHELQILHGQIGGM--KSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQ  158 (504)
Q Consensus        81 qELa~lqqEL~~L~~~L~~l--~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~  158 (504)
                      .+|..+-..-..+..-+..+  ..++...+..+......+...   ...++.+|+.++.++.....+...|..+...+..
T Consensus         7 ~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~---nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~   83 (150)
T PF07200_consen    7 EELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQ---NLSLEPELEELRSQLQELYEELKELESEYQEKEQ   83 (150)
T ss_dssp             HHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH---hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          159 DLQRAHTDVQQ---IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL  222 (504)
Q Consensus       159 ELq~l~~elqq---l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekL  222 (504)
                      ++..+......   +..|+..+..+..+.+.+-..+-.-.-.+....++..+..+....-....++|
T Consensus        84 ~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH~R~~K~EkL  150 (150)
T PF07200_consen   84 QQDELSSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKLYHLRRAKEEKL  150 (150)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhccC

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=95.50  E-value=3  Score=41.45  Aligned_cols=161  Identities=17%  Similarity=0.223  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010679           62 MQKLATENQRLAATHGTLRQELA-AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQ  140 (504)
Q Consensus        62 Iq~Le~e~qrLe~qi~~LkqELa-~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELq  140 (504)
                      ...+..+...+...|..+-+.|. .+-..|..+...+..........+..++..+.++..+   ++..+.....+..+.+
T Consensus        67 w~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~---l~kskk~Y~~~~ke~~  143 (251)
T cd07653          67 FRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQ---LEKSKKAYEKAFKEAE  143 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 010679          141 NLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK-----FYNDHLESLQVMEKNYITM  215 (504)
Q Consensus       141 eL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk-----~~~el~eqlqemek~L~sm  215 (504)
                      .+.....+.......-..++++++..+.+.   ..+.+..+.++...-..+...+.     .+..+.+.+++++......
T Consensus       144 ~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~---~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~  220 (251)
T cd07653         144 KAKQKYEKADADMNLTKADVEKAKANANLK---TQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINR  220 (251)
T ss_pred             HHHHHHHHhhhhhccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH


Q ss_pred             HHHHHHHHHHHHh
Q 010679          216 ATEVEKLRAELMN  228 (504)
Q Consensus       216 e~EiekLraELek  228 (504)
                      -+++-..-.+++.
T Consensus       221 ~k~~l~~~~~~~~  233 (251)
T cd07653         221 TVELLLQAAEIER  233 (251)
T ss_pred             HHHHHHHHHHHHH

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>KOG4657 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=1.2  Score=43.83  Aligned_cols=121  Identities=15%  Similarity=0.219  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           84 AAAQHELQILHGQIGG-MKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (504)
Q Consensus        84 a~lqqEL~~L~~~L~~-l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~  162 (504)
                      ..+..++......++. +......-+..+.+-+.++.....+.+.+++.+.+-..++++....+++-....-.+++++..
T Consensus        18 d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~   97 (246)
T KOG4657|consen   18 DICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKA   97 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHH
Q 010679          163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEK----KFYNDHLESLQV  207 (504)
Q Consensus       163 l~~elqql~~L~~EIeaLrqELq~LR~eLe~~k----k~~~el~eqlqe  207 (504)
                      +++   +++.+..-+..++.|+.+++.-|...+    +.++..-+..|+
T Consensus        98 ~q~---elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQd  143 (246)
T KOG4657|consen   98 TQS---ELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQD  143 (246)
T ss_pred             HHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=95.48  E-value=0.4  Score=41.00  Aligned_cols=81  Identities=16%  Similarity=0.207  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-------------------HHHHHHHHHHHHHHHhhHHH
Q 010679          133 QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL-------------------LSELESLRQEYHHCRGTYEY  193 (504)
Q Consensus       133 eqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L-------------------~~EIeaLrqELq~LR~eLe~  193 (504)
                      +++..++..+..++..+..++..|..++..+..-+..|..+                   ..-++.|..+++.+..+++.
T Consensus         1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~   80 (106)
T PF01920_consen    1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK   80 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010679          194 EKKFYNDHLESLQVMEKNYI  213 (504)
Q Consensus       194 ~kk~~~el~eqlqemek~L~  213 (504)
                      +++....+.+++++++++|.
T Consensus        81 l~~~~~~l~~~l~~~~~~l~  100 (106)
T PF01920_consen   81 LEKQLKYLEKKLKELKKKLY  100 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=95.48  E-value=0.81  Score=40.63  Aligned_cols=104  Identities=16%  Similarity=0.136  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH----HHHHHHHHHHHhHHH
Q 010679           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEK----IAKMEAELKTAEPVK  129 (504)
Q Consensus        54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~ek----i~kLEaEL~ele~Lk  129 (504)
                      ++-....+|-.+...+..-..++..+...+..-..+|......|.......+.-|++...+    +...+.+.+......
T Consensus         1 ~li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~   80 (126)
T PF13863_consen    1 ELIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKE   80 (126)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          130 LEFQKSKTEAQNLVVAREELIAKVHQLT  157 (504)
Q Consensus       130 aELeqLr~ELqeL~aerqeL~aqvq~L~  157 (504)
                      .+|..+..+|..+...+..+...++.+.
T Consensus        81 ~ei~~l~~~l~~l~~~~~k~e~~l~~~~  108 (126)
T PF13863_consen   81 AEIKKLKAELEELKSEISKLEEKLEEYK  108 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=95.48  E-value=1.7  Score=42.15  Aligned_cols=151  Identities=14%  Similarity=0.175  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELA--AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA  125 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa--~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~el  125 (504)
                      +.....-|..++..+..|.....+|+..++.......  ..+....+...-|.. +.-.+.++..+...+..|+..+-.+
T Consensus        22 ~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~Lkr-KK~~E~ql~q~~~ql~nLEq~~~~i  100 (191)
T PTZ00446         22 NDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKR-KKLYEQEIENILNNRLTLEDNMINL  100 (191)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             hHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-------HHHHHHHHHHHhhHH
Q 010679          126 EPVKLE------FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSEL-------ESLRQEYHHCRGTYE  192 (504)
Q Consensus       126 e~LkaE------LeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EI-------eaLrqELq~LR~eLe  192 (504)
                      +....+      +......+..+...+.  ..+|+.|..+++.......+|.+....-       ++|..||+.|.+ -+
T Consensus       101 E~a~~~~ev~~aLk~g~~aLK~~~k~~~--idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~-e~  177 (191)
T PTZ00446        101 ENMHLHKIAVNALSYAANTHKKLNNEIN--TQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKE-QT  177 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH-HH


Q ss_pred             HHHHHHHHHH
Q 010679          193 YEKKFYNDHL  202 (504)
Q Consensus       193 ~~kk~~~el~  202 (504)
                      -..+.+.++.
T Consensus       178 l~~~ll~~~~  187 (191)
T PTZ00446        178 MEEKLLKELI  187 (191)
T ss_pred             HHHHHHHHHh

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=95.48  E-value=2.5  Score=41.71  Aligned_cols=161  Identities=14%  Similarity=0.227  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHhhhccc
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQE-----------------------------LAAAQHELQILHGQIGGM  100 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqE-----------------------------La~lqqEL~~L~~~L~~l  100 (504)
                      .||.++++.++=+.+|........+.+...+..                             +..+-..+.+...+|..+
T Consensus        11 ~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G~aL~~~G~a~~kia~~   90 (215)
T cd07593          11 ELEKEIELRKEGMERLHRSTEAYVEYLSKKKPLLDDKDKCLPVEALGLVMINHGEEFPQDSEYGSCLSKLGRAHCKIGTL   90 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCChHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHH


Q ss_pred             hHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHH
Q 010679          101 KSERELQM-RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ-IPALLSELE  178 (504)
Q Consensus       101 ~ae~E~eL-~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqq-l~~L~~EIe  178 (504)
                      +..+...+ ..+.+-|....++++.+...+..|+..|-++...+..++.....-..++.+|...+.+..+ .+.....+.
T Consensus        91 q~~f~~~~~~~~l~pL~~~l~~~k~i~k~RKkLe~rRLdyD~~ksk~~kak~~~~~~eeElr~Ae~kfees~E~a~~~M~  170 (215)
T cd07593          91 QEEFADRLSDTFLANIERSLAEMKEYHSARKKLESRRLAYDAALTKSQKAKKEDSRLEEELRRAKAKYEESSEDVEARMV  170 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010679          179 SLRQ-EYHHCRGTYEYEKKFYNDHLESLQVMEK  210 (504)
Q Consensus       179 aLrq-ELq~LR~eLe~~kk~~~el~eqlqemek  210 (504)
                      .+.. +.+.++.-.+.++.++....+..+.|+.
T Consensus       171 ~i~~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~  203 (215)
T cd07593         171 AIKESEADQYRDLTDLLDAELDYHQQSLDVLRE  203 (215)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=95.47  E-value=0.31  Score=44.16  Aligned_cols=86  Identities=9%  Similarity=0.177  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010679           69 NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREE  148 (504)
Q Consensus        69 ~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqe  148 (504)
                      ++.|..-...+-+.|+.+-+.|...+++|.+-...++.++++..+-....+.+   +..++.++.+.+.++..++.....
T Consensus        38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~e---V~~v~~dv~~i~~dv~~v~~~V~~  114 (126)
T PF07889_consen   38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDE---VTEVREDVSQIGDDVDSVQQMVEG  114 (126)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHH
Q 010679          149 LIAKVHQLT  157 (504)
Q Consensus       149 L~aqvq~L~  157 (504)
                      |+.++.+|+
T Consensus       115 Le~ki~~ie  123 (126)
T PF07889_consen  115 LEGKIDEIE  123 (126)
T ss_pred             HHHHHHHHh

The region featured in this family is approximately 100 amino acids long.

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

Probab=95.47  E-value=3.1  Score=41.99  Aligned_cols=161  Identities=17%  Similarity=0.132  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010679           65 LATENQRLAATHGTLRQELA-AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLV  143 (504)
Q Consensus        65 Le~e~qrLe~qi~~LkqELa-~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~  143 (504)
                      +..++..++.+|..+..+|. .+-..|..+..++...+.....+...++..+.+.-.+   ++..+.....+-.+.+.++
T Consensus        72 ~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~---lekaKk~Y~~acke~E~A~  148 (253)
T cd07676          72 TLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQ---LESSKRRFERDCKEADRAQ  148 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          144 VAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL-RQEYHHCRGTY-EYEKKFYNDHLESLQVMEKNYITMATEVEK  221 (504)
Q Consensus       144 aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaL-rqELq~LR~eL-e~~kk~~~el~eqlqemek~L~sme~Eiek  221 (504)
                      ............-..++++++..++.-.........- ...|+.+-..- .+....+.++.+.+|+|++.....-.++-.
T Consensus       149 ~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~  228 (253)
T cd07676         149 QYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMK  228 (253)
T ss_pred             HHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHh
Q 010679          222 LRAELMN  228 (504)
Q Consensus       222 LraELek  228 (504)
                      .-.+++.
T Consensus       229 ~~~~~e~  235 (253)
T cd07676         229 TYAEVDR  235 (253)
T ss_pred             HHHHHHH

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=95.47  E-value=2.3  Score=41.07  Aligned_cols=152  Identities=16%  Similarity=0.128  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH-----HHhH
Q 010679           53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-----TAEP  127 (504)
Q Consensus        53 qeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~-----ele~  127 (504)
                      .++..+.+.++....+++.-..-+-.++++|  ...-+..|-.++.-...+.=.-|..+.+.+..+-+...     .+..
T Consensus        33 ~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~l--y~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s~~~f  110 (189)
T PF10211_consen   33 QDVIQLQEWLDKMLQQRQARETGICPVREEL--YSQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYESSIAF  110 (189)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccccHHHHHH--HHHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010679          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV  207 (504)
Q Consensus       128 LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqe  207 (504)
                      .....-+......++..++.+|+.++..|+.++..++.+.+.+.  +..-+....+......+++.+++....++.+++.
T Consensus       111 ~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e--k~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~  188 (189)
T PF10211_consen  111 GMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLE--KREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ  188 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc


Q ss_pred             H
Q 010679          208 M  208 (504)
Q Consensus       208 m  208 (504)
                      +
T Consensus       189 ~  189 (189)
T PF10211_consen  189 I  189 (189)
T ss_pred             C

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=95.47  E-value=0.26  Score=46.44  Aligned_cols=87  Identities=21%  Similarity=0.252  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHH
Q 010679           60 VEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV-----KLEFQK  134 (504)
Q Consensus        60 eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~L-----kaELeq  134 (504)
                      +++..+..++..|..++..|+.++..++.+|..|...+..  .++...+.+|..++..+++.|..+..-     ..|++.
T Consensus        72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~  149 (169)
T PF07106_consen   72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN--EELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEK  149 (169)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH


Q ss_pred             HHHHHHHHHHHHHH
Q 010679          135 SKTEAQNLVVAREE  148 (504)
Q Consensus       135 Lr~ELqeL~aerqe  148 (504)
                      +..+...+......
T Consensus       150 ~~~~~~~~~k~w~k  163 (169)
T PF07106_consen  150 LEKEYKKWRKEWKK  163 (169)
T ss_pred             HHHHHHHHHHHHHH

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>smart00806 AIP3 Actin interacting protein 3

Probab=95.45  E-value=4.7  Score=43.49  Aligned_cols=183  Identities=16%  Similarity=0.218  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHH
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLR-----------------------------------QELAAAQHELQI   92 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lk-----------------------------------qELa~lqqEL~~   92 (504)
                      ...|..+|+..+.-+..-..-.+++........                                   ++|..++++|..
T Consensus        87 i~~l~~~i~~~k~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~lrrdLav  166 (426)
T smart00806       87 IDTLQNELDEVKQALESQREAIQRLKERQQNSAANIARPAASPSPVLASSSSAISLANNPDKLNKEQRAELKSLQRELAV  166 (426)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcccCcccccCCCCcccccccccccccCCCcccchhHHHHHHHHHHHHHH


Q ss_pred             HHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 010679           93 LHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE------PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL------  160 (504)
Q Consensus        93 L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele------~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~EL------  160 (504)
                      |+........+....|..+.+++.+++.---...      -+..--.+|..+-+.|.....+|+.-|+.|..++      
T Consensus       167 lRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVR  246 (426)
T smart00806      167 LRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVR  246 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC


Q ss_pred             ---HHHHHhhhhhhHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          161 ---QRAHTDVQQIPALLSELESLRQEYHH----CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       161 ---q~l~~elqql~~L~~EIeaLrqELq~----LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                         .+++.-.+.|....++|..++.=|..    .+.--+.+-..+-+.++.+.-++.-+..+...|+++..-+...+
T Consensus       247 p~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVe  323 (426)
T smart00806      247 PSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLVE  323 (426)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	504
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-10
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-09
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
3kbt_A	326	Beta-I spectrin, spectrin beta chain, erythrocyte;	1e-07
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	1e-07
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	2e-06
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	2e-06
2xs1_A	704	Programmed cell death 6-interacting protein; prote	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3l4q_C	170	Phosphatidylinositol 3-kinase regulatory subunit b	7e-07
1u4q_A	322	Spectrin alpha chain, brain; alpha spectrin, three	1e-05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	2e-05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	3e-05
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	2e-04
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	2e-04
1u5p_A	216	Spectrin alpha chain, brain; alpha spectrin, two r	3e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	9e-04

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 26/187 (13%), Positives = 67/187 (35%), Gaps = 7/187 (3%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSE---RE 105
             +++K+ +   E+ K +   +          ++   A+ ++  L+ +I   + E    +
Sbjct: 44  VSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQ 103

Query: 106 LQMRNLTEKIAKMEAELKTAEPV--KLEFQKSKTEAQ--NLVVAREELIAKVHQLTQDLQ 161
            ++    +K+ + E     +E     +E +  K E +     +  +E         +  +
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE 163

Query: 162 RAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 221
                +  I + L   E   +         E E K   ++L+SL+   + Y     + E+
Sbjct: 164 EVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEE 223

Query: 222 LRAELMN 228
               L +
Sbjct: 224 EIKVLSD 230

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 57.0 bits (137), Expect = 4e-09
 Identities = 22/187 (11%), Positives = 68/187 (36%), Gaps = 10/187 (5%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE--- 105
           +  ++++A+   ++++              +       + +++I   Q+   K   E   
Sbjct: 100 DRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDAD 159

Query: 106 LQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAR----EELIAKVHQLTQDLQ 161
            +   +  K+  +E++L+ AE      +    E +  +       + L A+  + +Q   
Sbjct: 160 RKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKED 219

Query: 162 RAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 221
           +   +++ +   L E E+  +         E       D L +    +  Y  ++ E++ 
Sbjct: 220 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ---KLKYKAISEELDH 276

Query: 222 LRAELMN 228
              ++ +
Sbjct: 277 ALNDMTS 283

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 52.7 bits (126), Expect = 9e-08
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 20/190 (10%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSER---- 104
           +  E    +     ++L  E         +L+++L A + EL      +   + +     
Sbjct: 23  DEAEADKKAAEDRSKQLEDELV-------SLQKKLKATEDELDKYSEALKDAQEKLELAE 75

Query: 105 ------ELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQ 158
                 E  + +L  +I   E EL  A+       +   EA+    A +E    +  +  
Sbjct: 76  KKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEK---AADESERGMKVIES 132

Query: 159 DLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATE 218
             Q+    ++     L E + + ++          +       LE  +   +       E
Sbjct: 133 RAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAE 192

Query: 219 VEKLRAELMN 228
           +E+    + N
Sbjct: 193 LEEEIKTVTN 202

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 26/170 (15%), Positives = 57/170 (33%), Gaps = 26/170 (15%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           +MQ L  + +           +  AA+   +           + E ++ +L +K+   E 
Sbjct: 7   KMQMLKLDKENALDRADEAEADKKAAEDRSK-----------QLEDELVSLQKKLKATED 55

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           EL          + ++ + +       +  A V  L + +Q    ++ +    L+     
Sbjct: 56  ELDKYS---EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQK 112

Query: 181 RQEYHHCRGTYEYEKKFYNDHLES-LQVMEKNYITMATEVEKLRAELMNA 229
            +E          EK    D  E  ++V+E        ++E    +L  A
Sbjct: 113 LEEA---------EKA--ADESERGMKVIESRAQKDEEKMEIQEIQLKEA 151

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 11/183 (6%)

Query: 51   MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
            ME  I     +  KL  E + L      L   LA  + + +     +  +K++ E  +  
Sbjct: 988  MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK----NLTKLKNKHESMISE 1043

Query: 111  LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170
            L  ++ K E   +  E +K   +K + E+ +L     EL A++ +L   L +   ++Q  
Sbjct: 1044 LEVRLKKEEKSRQELEKIK---RKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100

Query: 171  PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV----MEKNYITMATEVEKLRAEL 226
             A L +  S +          E       + LES +      EK    ++ E+E L+ EL
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160

Query: 227  MNA 229
             + 
Sbjct: 1161 EDT 1163

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 36/193 (18%), Positives = 73/193 (37%), Gaps = 15/193 (7%)

Query: 49   EVMEQKIASQHVEMQKLATENQR----LAATHGTLRQELAAAQHELQILHGQIGGMKSER 104
            E M  ++A++  E++++  E +            L+ E    Q ++  L  Q+   ++ R
Sbjct: 912  EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971

Query: 105  ---ELQMRNLTEKIAKMEAELKTAEPVKLEFQKSK----TEAQNLVVAREELIAKVHQLT 157
               +L+      KI KME ++   E    +  K +        +L     E   K   LT
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

Query: 158  QDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV----MEKNYI 213
            +   +  + + ++   L + E  RQE    +   E E    ++ +  LQ     ++    
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 214  TMATEVEKLRAEL 226
                E++   A L
Sbjct: 1092 KKEEELQAALARL 1104

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 30/189 (15%), Positives = 71/189 (37%), Gaps = 16/189 (8%)

Query: 51   MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQH----------ELQILHGQIGGM 100
            +E+++  +    QKL  E          +  ++   +            L+     +   
Sbjct: 960  LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 101  KSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160
             +E E + +NLT+   K E+ +   E    + +KS+ E +     + +L  +   L + +
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK---IKRKLEGESSDLHEQI 1076

Query: 161  QRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 220
                  + +   L ++L    +E        E E    N+ L+ ++ +E +   +  ++E
Sbjct: 1077 AELQAQIAE---LKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLE 1133

Query: 221  KLRAELMNA 229
              +A    A
Sbjct: 1134 SEKAARNKA 1142

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 33/189 (17%), Positives = 77/189 (40%), Gaps = 18/189 (9%)

Query: 53   QKIASQHVEMQKLATE-NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSER---ELQM 108
            Q+      E+   A E   RLAA    L + L   +  ++    +   +++E+   + QM
Sbjct: 898  QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 957

Query: 109  RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAK-----------VHQLT 157
             +L E++ + EA  +  +  K+       + ++ ++  E+   K           V  LT
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 158  QDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMAT 217
             +L       + +  L ++ ES+  E        + E+K   +  +  + +E     +  
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISEL---EVRLKKEEKSRQELEKIKRKLEGESSDLHE 1074

Query: 218  EVEKLRAEL 226
            ++ +L+A++
Sbjct: 1075 QIAELQAQI 1083

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 49   EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSEREL-- 106
              +   +A +  + + L     +  +    L   L   +   Q L      ++ E     
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLH 1073

Query: 107  --------QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQ 158
                    Q+  L  ++AK E EL+ A       +   ++  N +    EL + +  L +
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEEELQAA---LARLEDETSQKNNALKKIRELESHISDLQE 1130

Query: 159  DL---QRAHTDVQ-QIPALLSELESLRQE 183
            DL   + A    + Q   L  ELE+L+ E
Sbjct: 1131 DLESEKAARNKAEKQKRDLSEELEALKTE 1159

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 33/175 (18%), Positives = 72/175 (41%), Gaps = 27/175 (15%)

Query: 51   MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
            +++KI  Q+ E + L  +   L  T+ T  ++L +    L++   +          ++ +
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE----AKNATNRVLS 988

Query: 111  LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170
            L E+IAK+  EL           +++TE + +    ++   +  QL  +L+  +T ++  
Sbjct: 989  LQEEIAKLRKEL----------HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT- 1037

Query: 171  PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225
                 E E L +           + K   + +E   V E   + +    E+LR +
Sbjct: 1038 -----EKEELNRR-------IHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 30/186 (16%), Positives = 68/186 (36%), Gaps = 14/186 (7%)

Query: 51   MEQKIASQHVEMQKL-ATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMR 109
              + +A + ++  K+ A   +R    H  L  ++   Q ++     +          +M 
Sbjct: 897  YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKID----EQNKEYKSLLEKMN 952

Query: 110  NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ- 168
            NL    +    +L++        + S+ EA+N       L  ++ +L ++L +  T+ + 
Sbjct: 953  NLEITYSTETEKLRSDV---ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 169  ---QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL--QVMEKNYITMATEVEKLR 223
                      E E L  E        + EK+  N  +     ++ E     +  E ++L 
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE 1069

Query: 224  AELMNA 229
             +L + 
Sbjct: 1070 LDLNDE 1075

>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 24/206 (11%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE--- 105
              ++ +      +++LA+  Q L +      +++   Q ++   +  +  +  ER+   
Sbjct: 47  LRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKL 106

Query: 106 ---LQMRNLTEKIAKMEAELKTAEP-------------VKLEFQKSKTEAQNLVVAREEL 149
                +  L  +   +E  +   E              V L   K +  A+      +E 
Sbjct: 107 ENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQER 166

Query: 150 IAKVHQLTQDL-QRAHTDVQQIPALLSELESLRQEY--------HHCRGTYEYEKKFYND 200
           +  V+   + L    H++   I      L  +  +              +Y+   +++  
Sbjct: 167 VDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLH-RYFYT 225

Query: 201 HLESLQVMEKNYITMATEVEKLRAEL 226
             E L ++++ +  +  +V    +  
Sbjct: 226 GAEILGLIDEKHRELPEDVGLDASTA 251

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 26/176 (14%), Positives = 65/176 (36%), Gaps = 19/176 (10%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM-------RNLTE 113
           +   L  E           +Q    A+ EL         +++E E Q+       R+L  
Sbjct: 4   DFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA 63

Query: 114 KIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL 173
              +++ E+   E +K + +    ++   V   E+ +++   + + L +   +++Q    
Sbjct: 64  DNQRLKYEV---EALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ---- 116

Query: 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVME---KNYITMATEVEKLRAEL 226
               + L +       + E  ++  N  +E    +E       ++   V++L+ E 
Sbjct: 117 --ANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEA 170

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 3/140 (2%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
              EQ+      + Q+L  E + L         +       L+    Q   +K +    +
Sbjct: 52  VQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV 111

Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
           R L +    +E   +       +F++   +A       E  + +   L   +QR   + +
Sbjct: 112 RELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEAR 171

Query: 169 QIPALLSELESLRQEYHHCR 188
               L  EL    ++    R
Sbjct: 172 D---LRQELAVRERQQEVTR 188

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
           +E ++       + L  +NQRL      L+++L     +       +    S+       
Sbjct: 47  LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ 106

Query: 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170
           L + + ++E      E  K     S  + +       + I +   L  +L    + +  +
Sbjct: 107 LHKYVRELEQANDDLERAKRATIMSLEDFEQ---RLNQAIERNAFLESELDEKESLLVSV 163

Query: 171 PALLSELESLRQEYHHCRGTYEYEKK 196
             L  E   LRQE        E  +K
Sbjct: 164 QRLKDEARDLRQELAVRERQQEVTRK 189

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 53.0 bits (126), Expect = 2e-07
 Identities = 26/192 (13%), Positives = 64/192 (33%), Gaps = 21/192 (10%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAA----THGTLRQELAAAQHELQILHGQIGGMKSER 104
             +++   S    +  L      L A     +     + +   + L+ L   +  +K ER
Sbjct: 513 GQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKER 572

Query: 105 ELQMRNLTEKIAKMEAELKTAEP----------VKLEFQKSKTEAQNLVVAREELIAKVH 154
           E    +L      M ++  TA               E  +        V   +E + K  
Sbjct: 573 EGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKV---QESLKKQE 629

Query: 155 QLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT 214
            L +++Q +H +  ++    +E     +   +    Y+     + + + +L+   K Y  
Sbjct: 630 GLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDN----FVELVANLKEGTKFYNE 685

Query: 215 MATEVEKLRAEL 226
           +   + + + + 
Sbjct: 686 LTEILVRFQNKC 697

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 50/362 (13%), Positives = 95/362 (26%), Gaps = 110/362 (30%)

Query: 6   RIPPPHLRRPPPGPGM------MHPDPFVS--GMRPPMPGA------------FPPFDMM 45
                ++ R  P   +      + P   V   G+     G+            +     M
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGSGKTWVALDVCLSYKVQCKM 180

Query: 46  P-------------PPEVME--QKIASQ-----HVEMQKLATENQRLAATHGTLRQELAA 85
                         P  V+E  QK+  Q            +    R+ +    LR+ L +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 86  AQHE--LQILHGQIGGMKSERELQMRNLTEKI---------AKMEAELKTAEPVKLEFQK 134
             +E  L +L      +++ +     NL+ KI             +   T          
Sbjct: 241 KPYENCLLVLLN----VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 135 SKTEAQNLVVAREELIAK-VHQLTQDLQR-AHT----DVQQIPALLSELESLRQEYHHCR 188
           + T  +        L+ K +    QDL R   T     +  I   + +  +    + H  
Sbjct: 297 TLTPDEVK-----SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-- 349

Query: 189 GTYEYEK------KFYN--------DHLESLQVMEKN-YITMAT-----------EVEKL 222
                +K         N           + L V   + +I               +V  +
Sbjct: 350 --VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 223 RAELMNAPNVDRRAADGSYG------GATGNSENETS--GRPVGQNAYEDGYGVPQGHGP 274
             +L     V+++  + +              ENE +     V  + Y            
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--DHYNIPKTFDSDDLI 465

Query: 275 PP 276
           PP
Sbjct: 466 PP 467

>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B Length = 170

 Score = 48.6 bits (115), Expect = 7e-07
 Identities = 22/144 (15%), Positives = 57/144 (39%), Gaps = 9/144 (6%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           E +  ++   H + Q  + E  +L   +    QEL   +  ++  +  I   + + + Q 
Sbjct: 13  EAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQE 72

Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV- 167
           ++  E + +   E    E  ++     + +++       E+     +L Q+L+   +D  
Sbjct: 73  KSSKEYLERFRREGNEKEMQRILLNSERLKSR-----IAEIHESRTKLEQELRAQASDNR 127

Query: 168 ---QQIPALLSELESLRQEYHHCR 188
              +++ +L  +L  LR+      
Sbjct: 128 EIDKRMNSLKPDLMQLRKIRDQYL 151

>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 21/154 (13%), Positives = 54/154 (35%), Gaps = 19/154 (12%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE--- 105
           +++E  I++    ++ L ++   L  +      ++   +  +     +I  M + R    
Sbjct: 46  QLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKL 105

Query: 106 ---LQMRNLTEKIAKMEAELKTAEPV--KLEFQKSKTEAQNL----------VVAREELI 150
               ++      +   E+ +K  + +    ++ +  T  QNL          + A E  I
Sbjct: 106 NESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAI 165

Query: 151 AKVHQLTQDL-QRAHTDVQQIPALLSELESLRQE 183
             V    + L        ++I   L++     +E
Sbjct: 166 QGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKE 199

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 14/162 (8%)

Query: 49  EVMEQKIAS---QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE 105
           E     + +     V ++K  TE  +          +L +   ELQ  +  +   KS+ +
Sbjct: 16  EEANDLLRTESDTAVRLRKSHTEMSKSI-------SQLESLNRELQERNRILENSKSQTD 68

Query: 106 LQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165
                L   +     +      +  + Q   T  Q  V   +  + KV    ++ Q    
Sbjct: 69  KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128

Query: 166 DVQQIPALLSELE-SLRQEYHHCRGTYEYEKKFYNDHLESLQ 206
             ++     + LE  L  +    +   E E   +      L 
Sbjct: 129 HSEK---EKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKARLT 167

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 18/134 (13%), Positives = 49/134 (36%), Gaps = 5/134 (3%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
           M + I+      ++L   N+ L  +     ++    Q  L+         +      + +
Sbjct: 39  MSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRD----RGHDSEMIGD 94

Query: 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKV-HQLTQDLQRAHTDVQQ 169
           L  +I  ++ E+K  +    + +  + EAQ+++   E+    +   L   L+     ++Q
Sbjct: 95  LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQ 154

Query: 170 IPALLSELESLRQE 183
                   ++   +
Sbjct: 155 EVNEHKVTKARLTD 168

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 24/147 (16%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSER----------ELQMRN 110
           ++++L ++N  L      L++ L  A+   ++  G+   ++ E           E Q   
Sbjct: 8   KVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEK 67

Query: 111 LTEKIAKMEAE-------LKTAEPVKLEFQKSKTEAQNLVVAREELIA----KVHQLTQD 159
            ++K  K E E       LK AE      ++S T+ +  +   E+ +     K   ++++
Sbjct: 68  YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE 127

Query: 160 LQRAHTDVQQIPALLSELESLRQEYHH 186
           +++    V++   LLS+   L  E   
Sbjct: 128 MKQLEDKVEE---LLSKNYHLENEVAR 151

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 114 KIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL 173
           K A+ E E+ + +    EF + K   +     R+EL  K+  L Q+       VQ     
Sbjct: 7   KSAEREKEMASMK---EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN 63

Query: 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226
           L++ E    +    +   E + K  N  LE     E+    +  +  KL  E 
Sbjct: 64  LADAEERCDQLIKNKIQLEAKVKEMNKRLED---EEEMNAELTAKKRKLEDEC 113

>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 21/154 (13%), Positives = 54/154 (35%), Gaps = 19/154 (12%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE--- 105
           +++E  I++    ++ L ++   L  +      ++   +  +     +I  M + R    
Sbjct: 46  QLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKL 105

Query: 106 ---LQMRNLTEKIAKMEAELKTAEPV--KLEFQKSKTEAQNL----------VVAREELI 150
               ++      +   E+ +K  + +    ++ +  T  QNL          + A E  I
Sbjct: 106 NESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAI 165

Query: 151 AKVHQLTQDL-QRAHTDVQQIPALLSELESLRQE 183
             V    + L        ++I   L++     +E
Sbjct: 166 QGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKE 199

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 101 KSERELQMRNLTEKIAKMEAELK-TAEPVKLEF------QKSKTEAQNLVVAREELIAKV 153
           + E+  +++ L      ME E +  A+    E+      Q  K +  N  +A +      
Sbjct: 91  REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR-IADKAFYQ-- 147

Query: 154 HQLTQDL 160
            Q   D+
Sbjct: 148 -QPDADI 153

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 21/94 (22%)

Query: 47  PPEVMEQKIASQHVE-MQKLATENQ-RLAATHGTLRQELAAAQHELQILHGQIGGMKSER 104
              + ++       E ++K   E + RL           +    +           K + 
Sbjct: 77  ADRLTQEP------ESIRKWREEQRKRLQE-----LDAASKVMEQEWREKA-----KKDL 120

Query: 105 ELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE 138
           E   +  +E++ K +   + A+  K  F +    
Sbjct: 121 EEWNQRQSEQVEKNKINNRIAD--K-AFYQQPDA 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	504
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.0
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.82
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.77
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.75
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.75
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.57
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	98.43
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.43
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	98.37
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.35
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	98.18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.0
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.98
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	97.96
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.96
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	97.92
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.9
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	97.84
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.81
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	97.58
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	97.5
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	97.46
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	97.45
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	97.45
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	97.4
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	97.39
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	97.35
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	97.32
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	97.29
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	97.2
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	97.18
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	97.13
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	97.13
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	97.12
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	97.09
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	97.08
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	97.07
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	97.01
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	96.99
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	96.97
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	96.97
3g67_A	213	Methyl-accepting chemotaxis protein; four-helix bu	96.97
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	96.96
3g67_A	213	Methyl-accepting chemotaxis protein; four-helix bu	96.89
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	96.82
1cun_A	213	Protein (alpha spectrin); two repeats of spectrin,	96.79
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	96.79
1u5p_A	216	Spectrin alpha chain, brain; alpha spectrin, two r	96.67
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	96.66
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	96.65
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	96.62
2nrj_A	346	HBL B protein; enterotoxin, hemolysis, transmembra	96.58
3edv_A	323	Spectrin beta chain, brain 1; spectrin repeat, coi	96.57
2nrj_A	346	HBL B protein; enterotoxin, hemolysis, transmembra	96.55
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	96.54
3pdy_A	210	Plectin; cytoskeleton, plakin, intermediate filame	96.53
2b5u_A	551	Colicin E3; high resolution colicin E3, ribosome i	96.53
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	96.52
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	96.51
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	96.51
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	96.49
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	96.49
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	96.46
3plt_A	234	Sphingolipid long chain base-responsive protein L;	96.44
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	96.44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	96.43
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	96.42
3fb2_A	218	Spectrin alpha chain, brain spectrin; non-erythroi	96.39
3zx6_A	341	HAMP, methyl-accepting chemotaxis protein I; signa	96.39
3edu_A	218	Beta-I spectrin, spectrin beta chain, erythrocyte;	96.37
1u4q_A	322	Spectrin alpha chain, brain; alpha spectrin, three	96.32
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	96.32
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	96.31
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	96.27
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	96.24
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	96.24
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	96.23
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	96.2
3plt_A	234	Sphingolipid long chain base-responsive protein L;	96.19
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	96.17
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	96.17
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	96.17
1s35_A	214	Beta-I spectrin, spectrin beta chain, erythrocyte;	96.16
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	96.16
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	96.15
2b5u_A	551	Colicin E3; high resolution colicin E3, ribosome i	96.09
2xzr_A	114	Immunoglobulin-binding protein EIBD; cell adhesion	96.07
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	96.06
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	96.06
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	96.05
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	96.02
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	96.0
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	95.95
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	95.93
1d7m_A	101	Cortexillin I; coiled-coil, coiled-coil trigger si	95.9
1cun_A	213	Protein (alpha spectrin); two repeats of spectrin,	95.89
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	95.89
2xnx_M	146	M protein, M1-BC1; cell adhesion, virulence factor	95.89
1m1j_A	491	Fibrinogen alpha subunit; coiled coils, disulfide	95.83
4fla_A	152	Regulation of nuclear PRE-mRNA domain-containing 1	95.79
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	95.76
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.75
3ibp_A	302	Chromosome partition protein MUKB; structural main	95.71
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	95.71
3kbt_A	326	Beta-I spectrin, spectrin beta chain, erythrocyte;	95.63
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	95.6
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	95.59
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	95.58
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	95.55
1m1j_A	491	Fibrinogen alpha subunit; coiled coils, disulfide	95.54
2xs1_A	704	Programmed cell death 6-interacting protein; prote	95.52
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	95.5
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	95.47
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	95.44
3l4q_C	170	Phosphatidylinositol 3-kinase regulatory subunit b	95.41
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	95.37
2iak_A	224	Bullous pemphigoid antigen 1, isoform 5; triple he	95.35
3tul_A	158	Cell invasion protein SIPB; translocator, type thr	95.32
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	95.3
3fb2_A	218	Spectrin alpha chain, brain spectrin; non-erythroi	95.24
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	95.23
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	95.14
2v0o_A	276	FCHO2, FCH domain only protein 2; lipid-binding pr	95.13
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	95.12
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	95.11
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	95.1
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	95.03
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	95.03
1y1u_A	585	Signal transducer and activator of transcription;	95.03
3ajw_A	150	Flagellar FLIJ protein; flagellum, type III secret	95.02
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	95.0
3k29_A	169	Putative uncharacterized protein; YSCO, type III s	94.97
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.93
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	94.92
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	94.9
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	94.88
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	94.83
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	94.8
4abx_A	175	DNA repair protein RECN; DNA binding protein, ATP	94.73
1u5p_A	216	Spectrin alpha chain, brain; alpha spectrin, two r	94.71
3edv_A	323	Spectrin beta chain, brain 1; spectrin repeat, coi	94.69
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	94.67
3okq_A	141	BUD site selection protein 6; coiled-coil, protein	94.65
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	94.63
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	94.63
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	94.6
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	94.6
2avr_X	119	Adhesion A; antiparallel helix-loop-helix, leucine	94.57
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	94.5
2a01_A	243	Apolipoprotein A-I; four-helix bundle, lipid trans	94.46
1hci_A	476	Alpha-actinin 2; triple-helix coiled coil, contrac	94.45
3edu_A	218	Beta-I spectrin, spectrin beta chain, erythrocyte;	94.45
3bas_A	89	Myosin heavy chain, striated muscle/general contro	94.44
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	94.43
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	94.39
2v0o_A	276	FCHO2, FCH domain only protein 2; lipid-binding pr	94.3
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	94.24
2p22_C	192	Protein SRN2; endosome, trafficking complex, VPS23	94.22
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	94.21
3l4q_C	170	Phosphatidylinositol 3-kinase regulatory subunit b	94.16
1bf5_A	575	Signal transducer and activator of transcription 1	94.16
3iyk_A	526	VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu	94.15
3ajw_A	150	Flagellar FLIJ protein; flagellum, type III secret	94.15
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	94.13
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	94.06
4akv_A	386	Sorting nexin-33; transport protein, organelle bio	94.06
3tul_A	158	Cell invasion protein SIPB; translocator, type thr	94.05
1bf5_A	575	Signal transducer and activator of transcription 1	94.04
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	94.0
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	93.93
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	93.92
2avr_X	119	Adhesion A; antiparallel helix-loop-helix, leucine	93.89
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	93.89
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	93.87
1nfn_A	191	Apolipoprotein E3; lipid transport, heparin-bindin	93.86
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	93.81
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	93.81
3bas_A	89	Myosin heavy chain, striated muscle/general contro	93.76
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	93.75
3etw_A	119	Adhesin A; antiparallel helix-loop-helix, leucine	93.73
2xs1_A	704	Programmed cell death 6-interacting protein; prote	93.63
3ghg_B	461	Fibrinogen beta chain; triple-stranded coiled coil	93.61
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	93.51
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	93.48
2l7b_A	307	Apolipoprotein E, APO-E; lipid transport, atherosc	93.47
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	93.44
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	93.36
1qu7_A	227	Methyl-accepting chemotaxis protein I; serine, fou	93.36
2pms_C	125	Pneumococcal surface protein A (PSPA); lactoferrin	93.34
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	93.3
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	93.3
2lem_A	216	Apolipoprotein A-I; lipid transport; NMR {Mus musc	93.29
2pms_C	125	Pneumococcal surface protein A (PSPA); lactoferrin	93.29
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	93.23
1quu_A	250	Human skeletal muscle alpha-actinin 2; triple-heli	93.19
3ghg_B	461	Fibrinogen beta chain; triple-stranded coiled coil	93.15
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	93.05
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	93.04
1quu_A	250	Human skeletal muscle alpha-actinin 2; triple-heli	92.95
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	92.93
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	92.93
3dyt_A	366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	92.88
1yvl_A	683	Signal transducer and activator of transcription 1	92.84
4hpq_C	413	ATG17, KLTH0D15642P; autophagy, protein transport;	92.8
3pdy_A	210	Plectin; cytoskeleton, plakin, intermediate filame	92.76
2dq3_A	425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	92.59
1qu7_A	227	Methyl-accepting chemotaxis protein I; serine, fou	92.58
3uun_A	119	Dystrophin; triple helical, cell structure and sta	92.47
1xaw_A	140	Occludin; coiled-coil, cell adhesion; 1.45A {Homo	92.41
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	92.36
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	92.28
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	92.17
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	92.16
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	92.1
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	92.07
3r2p_A	185	Apolipoprotein A-I; amphipathic alpha-helix, major	92.06
1yvl_A	683	Signal transducer and activator of transcription 1	92.05
2d1l_A	253	Metastasis suppressor protein 1; IRSP53, actin bin	92.03
3fhn_A	706	Protein transport protein TIP20; TIP20P, vesicle t	92.0
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	91.97
4avm_A	237	Bridging integrator 2; protein binding, plasma mem	91.95
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	91.94
3lay_A	175	Zinc resistance-associated protein; salmonella typ	91.9
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	91.88
3iyk_A	526	VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu	91.72
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	91.72
3fx0_A	96	NF-kappa-B essential modulator; coiled-coil, coile	91.72
2qih_A	157	Protein USPA1; trimeric, parallel alpha-helical co	91.64
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	91.57
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	91.52
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	91.48
3qwe_A	279	GMIP, GEM-interacting protein; structural genomics	91.44
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	91.44
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	91.41
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	91.35
2bsg_A	487	Fibritin; viral protein, attachment protein, bacte	91.25
4a3a_A	243	Amphiphysin; structural genomics, invagination, kn	91.21
2ap3_A	199	Conserved hypothetical protein; structural genomic	91.14
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	91.11
3uul_A	118	Utrophin; spectrin repeat, structural protein, cyt	91.04
1gqe_A	365	Release factor 2, RF2; protein synthesis, ribosome	90.89
1t3j_A	96	Mitofusin 1; coiled coil antiparallel, dimer, memb	90.89
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	90.81
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	90.78
1hci_A	476	Alpha-actinin 2; triple-helix coiled coil, contrac	90.71
4e61_A	106	Protein BIM1; EB1-like motif, coiled-coil, spindle	90.62
4dvz_A	569	Cytotoxicity-associated immunodominant antigen; on	90.61
2bsg_A	487	Fibritin; viral protein, attachment protein, bacte	90.58
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	90.54
1hs7_A	97	Syntaxin VAM3; UP-and-DOWN three-helix bundle inse	90.49
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	90.34
1t3j_A	96	Mitofusin 1; coiled coil antiparallel, dimer, memb	90.32
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	90.23
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	90.11
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	89.87
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	89.84
3qwe_A	279	GMIP, GEM-interacting protein; structural genomics	89.83
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	89.81
3lay_A	175	Zinc resistance-associated protein; salmonella typ	89.8
3ni0_A	99	Bone marrow stromal antigen 2; coiled-coil, antivi	89.61
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	89.51
3he5_B	52	Synzip2; heterodimeric coiled-coil, de novo protei	89.34
2etd_A	171	LEMA protein; bromodomain-like fold, structural ge	89.32
3htk_A	60	Structural maintenance of chromosomes protein 5; S	89.17
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	89.12
2k48_A	107	Nucleoprotein; viral protein; NMR {Andes virus}	89.08
2iak_A	224	Bullous pemphigoid antigen 1, isoform 5; triple he	89.06
3zbh_A	99	ESXA; unknown function, type 7 secretion, ESAT6 fa	88.99
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	88.97
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	88.97
2ke4_A	98	CDC42-interacting protein 4; CIP4, TC10, coiled-co	88.94
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	88.93
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	88.87
2dnx_A	130	Syntaxin-12; snare, HABC domain, UP and DOWN three	88.8
1gqe_A	365	Release factor 2, RF2; protein synthesis, ribosome	88.74
3m3w_A	320	Pacsin3, protein kinase C and casein kinase II sub	88.6
3thf_A	190	Protein shroom; coiled-coil, anti-parallel, helica	88.55
1vcs_A	102	Vesicle transport through interaction with T- snar	88.54
2d4y_A	463	HAP1, flagellar HOOK-associated protein 1; multi-d	88.5
2qyw_A	102	Vesicle transport through interaction with T-SNAR	88.37
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	88.23
3zbh_A	99	ESXA; unknown function, type 7 secretion, ESAT6 fa	88.16
3mov_A	95	Lamin-B1; LMNB1, B-type lamins, intermediate filam	88.12
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	88.0
1y1u_A	585	Signal transducer and activator of transcription;	87.87
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	87.72
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	87.59
2ap3_A	199	Conserved hypothetical protein; structural genomic	87.58
1s35_A	214	Beta-I spectrin, spectrin beta chain, erythrocyte;	87.3
2yfa_A	258	MCPS, methyl-accepting chemotaxis transducer; rece	87.14
3vp9_A	92	General transcriptional corepressor TUP1; four hel	87.11
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	87.05
3cl3_D	130	NF-kappa-B essential modulator; death effector dom	86.99
2p22_A	174	Suppressor protein STP22 of temperature- sensitive	86.99
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	86.99
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	86.82
3g9g_A	287	Suppressor of yeast profilin deletion; SYP1, BAR d	86.6
3gwk_C	98	SAG1039, putative uncharacterized protein SAG1039;	86.53
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	86.46
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	86.45
4g2k_A	125	General control protein GCN4, envelope glycoprote	86.44
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	86.34
4aj5_K	123	Spindle and kinetochore-associated protein 2; cell	86.26
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	86.16
3ilw_A	470	DNA gyrase subunit A; DNA topology, topoisomerase,	86.01
3he5_B	52	Synzip2; heterodimeric coiled-coil, de novo protei	85.91
2pih_A	151	Protein YMCA; regulate community development, stru	85.91
2fup_A	157	Hypothetical protein PA3352; structural genomics,	85.87
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	85.61
2q6q_A	74	Spindle POLE BODY component SPC42; SPC42P, budding	85.6
4dvy_P	876	Cytotoxicity-associated immunodominant antigen; on	85.54
3c9i_A	242	Tail needle protein GP26; xenon, coiled-coil, prot	85.46
3f31_A	149	Spectrin alpha chain, brain; LONE helix followed b	85.44
3opc_A	154	Uncharacterized protein; structural genomics, PSI-	85.42
3csx_A	81	Putative uncharacterized protein; metalloprotein,	85.4
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	85.18
1i6z_A	135	BAG-family molecular chaperone regulator-1; triple	85.11
1xaw_A	140	Occludin; coiled-coil, cell adhesion; 1.45A {Homo	85.08
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	84.86
2qyw_A	102	Vesicle transport through interaction with T-SNAR	84.7
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	84.65
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	84.6
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	84.52
3ni0_A	99	Bone marrow stromal antigen 2; coiled-coil, antivi	84.5
2p01_A	323	Alpha-2-macroglobulin receptor-associated protein;	84.4
4dci_A	150	Uncharacterized protein; PSI-biology, midwest cent	84.38
2dq3_A	425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	84.29
2iub_A	363	CORA, divalent cation transport-related protein; m	84.07
2js5_A	71	Uncharacterized protein; homodimer, protein struct	83.7
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	83.67
1r8i_A	213	TRAC; VIRB5, helical bundle, structural protein; 3	83.67
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	83.62
2inr_A	514	DNA topoisomerase 4 subunit A; topoisomerase II fo	83.54
3rrk_A	357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	83.45
3ilw_A	470	DNA gyrase subunit A; DNA topology, topoisomerase,	83.22
2c5k_T	95	Syntaxin TLG1, T-snare affecting A late golgi comp	83.0
3u06_A	412	Protein claret segregational; motor domain, stalk	82.99
4fi5_A	113	Nucleoprotein; structural genomics, niaid, nationa	82.96
3ra3_B	28	P2F; coiled coil domain, fiber, KIH interactions,	82.94
1lq7_A	67	Alpha3W; three helix bundle, de novo protein; NMR	82.84
1zvu_A	716	Topoisomerase IV subunit A; beta-pinwheel, ATPase,	82.79
2ke4_A	98	CDC42-interacting protein 4; CIP4, TC10, coiled-co	82.49
3dyt_A	366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	82.43
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	82.38
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	82.17
4akv_A	386	Sorting nexin-33; transport protein, organelle bio	82.15
3htk_A	60	Structural maintenance of chromosomes protein 5; S	82.08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	82.05
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	81.71
2xcs_B	692	DNA gyrase subunit B, DNA gyrase subunit A; isomer	81.7
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	81.68
4hpq_C	413	ATG17, KLTH0D15642P; autophagy, protein transport;	81.65
2w6b_A	56	RHO guanine nucleotide exchange factor 7; X-RAY cr	81.5
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	81.4
4aj5_K	123	Spindle and kinetochore-associated protein 2; cell	81.25
2cly_A	214	ATP synthase B chain, mitochondrial; mitochondrion	81.11
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	81.07
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	81.04
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	80.99
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	80.78
4b6x_A	90	AVRRPS4, avirulence protein; toxin, type 3 secrete	80.64
4a3a_A	243	Amphiphysin; structural genomics, invagination, kn	80.58
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	80.52
1kmi_Z	214	CHEZ, chemotaxis protein CHEZ; four-helix bundle,	80.3
3fhn_A	706	Protein transport protein TIP20; TIP20P, vesicle t	80.25
3u0c_A	201	Invasin IPAB, 62 kDa antigen; translocator, type t	80.11

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.00  E-value=3.2e-07  Score=87.60  Aligned_cols=48  Identities=10%  Similarity=0.180  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      .|..++..+..++..+..+...|..++..++.++..+..++..+...+
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~   50 (284)
T 1c1g_A            3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKL   50 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555444444444444444433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.82  E-value=4.6e-08  Score=114.06  Aligned_cols=128  Identities=9%  Similarity=0.084  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010679           68 ENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVARE  147 (504)
Q Consensus        68 e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerq  147 (504)
                      .+.+|+.++.+|+++|+..+++...|...+..++..++.++.+|+.++++++....+++.++.++..++.++.++..+++
T Consensus       922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A          922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp             -----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555444444444444433333344444555444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010679          148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDH  201 (504)
Q Consensus       148 eL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el  201 (504)
                      ++..+.+.|++++++++.      +|+..+..|++|.+.|+++++.++..+.+.
T Consensus      1002 ~~~ke~~~lee~~~~~~~------~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A         1002 QTQTEKKTIEEWADKYKH------ETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444433332      233445555566666665555554433333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.77  E-value=2.3e-06  Score=84.44  Aligned_cols=108  Identities=12%  Similarity=0.179  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH----
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT----  124 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~e----  124 (504)
                      +.++.+|..+..++..|-.++..|..++..++.++..++.++..+..++..    ++.++..+..++.+.+..+..    
T Consensus        14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~----~e~~i~~~~~ri~~~~~~l~~v~~~   89 (256)
T 3na7_A           14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSK----NEQTLQDTNAKIASIQKKMSEIKSE   89 (256)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHccCCH
Confidence            344444444444444444444445555555544555555554444444433    555666666666666666542    


Q ss_pred             --HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          125 --AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       125 --le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~EL  160 (504)
                        +..+..||+.++.++..+..++.++..+++.++.++
T Consensus        90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l  127 (256)
T 3na7_A           90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ  127 (256)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              234444444444444444444444444444443333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.75  E-value=1.6e-08  Score=119.09  Aligned_cols=47  Identities=19%  Similarity=0.290  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~   98 (504)
                      +.++..+.+++..+..++.+++..+.+++.++..+++++..+..++.
T Consensus       856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~  902 (1184)
T 1i84_S          856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ  902 (1184)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555554444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.75  E-value=1.5e-08  Score=119.44  Aligned_cols=49  Identities=20%  Similarity=0.202  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      ..++++|+.+..++..++..+..++.++..|++++..++.++......+
T Consensus       860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l  908 (1184)
T 1i84_S          860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY  908 (1184)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777766666666666666666666555555444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.57  E-value=7.1e-06  Score=80.90  Aligned_cols=58  Identities=21%  Similarity=0.191  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010679           62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK  123 (504)
Q Consensus        62 Iq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~  123 (504)
                      +|.+..++.+|...+..+..+|..+..++..++..+..    .+.++..+..++.+++.++.
T Consensus        13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~----~~~~l~d~~~~~~~~e~~i~   70 (256)
T 3na7_A           13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILN----LEEEKLALKLQVSKNEQTLQ   70 (256)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555555555555544    33334444444444444433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=98.43  E-value=3.6e-05  Score=72.45  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 010679           59 HVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAE  121 (504)
Q Consensus        59 ~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaE  121 (504)
                      .++|........++...+..++.+|...+..=..|..++.......+++++.|..++..|+.+
T Consensus         9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E   71 (189)
T 2v71_A            9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYE   71 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444555555555555555555444444444433333444444444444444444

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.43  E-value=3.4e-06  Score=98.47  Aligned_cols=72  Identities=14%  Similarity=0.111  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010679          138 EAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTYEYEKKFYNDHLESLQVME  209 (504)
Q Consensus       138 ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~E-IeaLrqELq~LR~eLe~~kk~~~el~eqlqeme  209 (504)
                      ++.++..++.+|+.++++|+++++++..+.+.+++...+ .+.|++++..|+++...++.++++++..+.+.+
T Consensus       978 e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A          978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444443333222111 234444444555555555555555554444433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=98.37  E-value=6.7e-05  Score=70.65  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 010679           82 ELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAK  117 (504)
Q Consensus        82 ELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~k  117 (504)
                      ++..++.++...+..-..+.++++.+|..+..++..
T Consensus        25 ~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~   60 (189)
T 2v71_A           25 SFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRD   60 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.35  E-value=4.6e-05  Score=96.64  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           73 AATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        73 e~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      .++++.|+.+|+..+.+|+..+++
T Consensus      1933 ~~~V~~l~~~L~~~~~~L~~k~~e 1956 (3245)
T 3vkg_A         1933 EAQVKDLQVSLAQKNRELDVKNEQ 1956 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444333

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=98.18  E-value=0.00069  Score=59.60  Aligned_cols=62  Identities=11%  Similarity=0.095  Sum_probs=33.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       169 ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      ++.+|.+++.+.-.-.+.|...|-.+++.++..+-..++.-...+++.-|-+.++..|+-.+
T Consensus        99 KLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR  160 (167)
T 4gkw_A           99 KLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR  160 (167)
T ss_dssp             HTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence            34444444444444444445555555555555555555555556666666777777666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.06  E-value=2.1e-05  Score=85.33  Aligned_cols=52  Identities=12%  Similarity=-0.034  Sum_probs=26.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       180 LrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      +++++++..++++.++++..+++++++++.+++.++.+|++.+++++.+++.
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444555555555555555555555555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.00  E-value=5.2e-05  Score=82.25  Aligned_cols=37  Identities=11%  Similarity=0.052  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010679          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNY  212 (504)
Q Consensus       176 EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L  212 (504)
                      ++++++.+++..++.++.++++...+.++++++++++
T Consensus       545 ~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          545 ENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333444444444444444444444444444444443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.98  E-value=0.0037  Score=57.06  Aligned_cols=53  Identities=13%  Similarity=0.152  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl  229 (504)
                      +..|+.+++++..+|...+..+..+.+.+..+-..|..|...+-.|..+|..+
T Consensus       100 v~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~  152 (155)
T 2efr_A          100 VTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL  152 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            34444444455545544454455555544444444444444444444444443

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=97.96  E-value=0.0011  Score=60.37  Aligned_cols=96  Identities=10%  Similarity=0.105  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlq  206 (504)
                      .+..++..|..++.+-...+.+.+.++..+..+|..|..-+      ..|   ...-....+.+....+..+..+.+++.
T Consensus        55 ~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL------FeE---AN~MVa~ar~~~~~~e~r~~~L~~ql~  125 (154)
T 2ocy_A           55 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL------FDE---ANNMVADARKEKYAIEILNKRLTEQLR  125 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666666666666666666666666666555432      111   111222233334444555666777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          207 VMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       207 emek~L~sme~EiekLraELekle~  231 (504)
                      +.+..|..+...+..|+.-+.+++.
T Consensus       126 e~~~~l~~lq~ql~~LK~v~~~m~~  150 (154)
T 2ocy_A          126 EKDTLLDTLTLQLKNLKKVMHSLDN  150 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            7777777777777777766665543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.96  E-value=0.0018  Score=59.60  Aligned_cols=52  Identities=19%  Similarity=0.233  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMA----TEVEKLRAELMN  228 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme----~EiekLraELek  228 (504)
                      |..|..|+++++..+.........+.+.+..+++....++    =++..++..++.
T Consensus        99 i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eq  154 (168)
T 3o0z_A           99 ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQ  154 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3333333333333333333334444444444444443333    334444444443

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=97.92  E-value=0.0055  Score=53.91  Aligned_cols=27  Identities=19%  Similarity=0.209  Sum_probs=10.9

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010679          182 QEYHHCRGTYEYEKKFYNDHLESLQVM  208 (504)
Q Consensus       182 qELq~LR~eLe~~kk~~~el~eqlqem  208 (504)
                      .-+--||.+|+.++-+..+.+..+..+
T Consensus       119 ~TiG~LrKELEdEklK~~E~MdSFE~L  145 (167)
T 4gkw_A          119 ETIGILRKELENEKLKAAENMDSFEKL  145 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444443333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.90  E-value=0.0017  Score=59.77  Aligned_cols=64  Identities=13%  Similarity=0.160  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679          104 RELQMRNLTEKIAKMEAELKT----AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV  167 (504)
Q Consensus       104 ~E~eL~eL~eki~kLEaEL~e----le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~el  167 (504)
                      .+..+++|++++..|+.....    +..|...|++-+.........+.+|+.+++.|..+|.+++...
T Consensus        46 ~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~  113 (168)
T 3o0z_A           46 LESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL  113 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555544222    2234444444444444444444555555555555555544433

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.81  E-value=0.012  Score=53.79  Aligned_cols=52  Identities=13%  Similarity=0.194  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR  223 (504)
Q Consensus       172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLr  223 (504)
                      .|..+|+.|..+|...+..+......+......+..|...+..+..+|..|+
T Consensus       102 kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~  153 (155)
T 2efr_A          102 KLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK  153 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            3344444444455444444444445555555566666667777777776664

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=97.58  E-value=0.0065  Score=55.30  Aligned_cols=26  Identities=4%  Similarity=0.034  Sum_probs=9.8

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010679          184 YHHCRGTYEYEKKFYNDHLESLQVME  209 (504)
Q Consensus       184 Lq~LR~eLe~~kk~~~el~eqlqeme  209 (504)
                      ...|+.++...+..+..+..++.++.
T Consensus       117 ~~~L~~ql~e~~~~l~~lq~ql~~LK  142 (154)
T 2ocy_A          117 NKRLTEQLREKDTLLDTLTLQLKNLK  142 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333334443333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=97.50  E-value=0.0097  Score=52.61  Aligned_cols=41  Identities=12%  Similarity=0.101  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          190 TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       190 eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      .|..+...+.+..+....+......+..++..|+.+|+.++
T Consensus        84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A           84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444455555555555555555555543

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=97.45  E-value=0.003  Score=67.05  Aligned_cols=111  Identities=11%  Similarity=0.073  Sum_probs=54.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH-H
Q 010679           46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-T  124 (504)
Q Consensus        46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~-e  124 (504)
                      |.==+|+.-|..++..+.+..++++...+++.....+.   .+-+..+...|+.    ...+..++...+.++-.||+ .
T Consensus        46 PSGCrLQglLdkqErDltkrINELKnqLEdlsKnsKds---eqy~k~~~E~Lr~----rq~q~~dNdNtynE~S~ELRRr  118 (562)
T 3ghg_A           46 PSGCRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDS---HSLTTNIMEILRG----DFSSANNRDNTYNRVSEDLRSR  118 (562)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH---HHHHHHHHHTTSS----HHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CcccchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhH---HHHHHHHHHHHHH----HHHhhhccchhHHHHHHHHHHH
Confidence            33345555555555544444333333333332222222   2222333333332    22222344444444444444 3


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA  163 (504)
Q Consensus       125 le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l  163 (504)
                      ++.|+.+|+.....|..|+..+.++..+|++|+.+|.-.
T Consensus       119 IqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq  157 (562)
T 3ghg_A          119 IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK  157 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666555667777777777777777777777543

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=97.45  E-value=0.0014  Score=69.45  Aligned_cols=13  Identities=15%  Similarity=0.107  Sum_probs=5.9

Q ss_pred             HHHHHHHHHhccc
Q 010679          219 VEKLRAELMNAPN  231 (504)
Q Consensus       219 iekLraELekle~  231 (504)
                      .+.++++|+++..
T Consensus       178 Y~~~QKQLeQv~a  190 (562)
T 3ghg_A          178 YEDQQKQLEQVIA  190 (562)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            3444444444443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=97.40  E-value=0.0024  Score=54.67  Aligned_cols=62  Identities=21%  Similarity=0.263  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679          107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ  168 (504)
Q Consensus       107 eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq  168 (504)
                      ++.+|++++.++++++..+.-|++.++-.+.+...-+..|..+..++++|..+|..++.+.+
T Consensus        46 ~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~  107 (110)
T 2v4h_A           46 LIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN  107 (110)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence            33444444444555555556666666666666666666666666666666666666555443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=97.39  E-value=0.01  Score=52.41  Aligned_cols=43  Identities=19%  Similarity=0.218  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI   92 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~   92 (504)
                      ..+.++.....+|..|.....+.......|......+..++..
T Consensus        10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~   52 (129)
T 2fxo_A           10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKND   52 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444443333333333333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=97.35  E-value=0.0043  Score=54.84  Aligned_cols=74  Identities=12%  Similarity=0.135  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 010679          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV-QQIPALLSELESLRQEYHHCRGTYEYEKKFYN  199 (504)
Q Consensus       126 e~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~el-qql~~L~~EIeaLrqELq~LR~eLe~~kk~~~  199 (504)
                      ...+.||..++..++.|..+++.+..+...|+..|...+... .++..++..|..|..+|.+++.+++.....+.
T Consensus        32 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq  106 (129)
T 3tnu_B           32 RNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQ  106 (129)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            345556666666666666666666666666666665544432 12344455566666666666665554433333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=97.32  E-value=0.0087  Score=50.80  Aligned_cols=30  Identities=23%  Similarity=0.278  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          198 YNDHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       198 ~~el~eqlqemek~L~sme~EiekLraELe  227 (504)
                      +......+.+.++.....+.++..|.+.|.
T Consensus        67 L~ea~~kLee~ek~~~~aE~ev~~L~Rriq   96 (101)
T 3u1c_A           67 LHKSEDSLLFAEENAAKAESEVASLNRRIQ   96 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444444444444444443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=97.29  E-value=0.0041  Score=55.16  Aligned_cols=93  Identities=15%  Similarity=0.189  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ-QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES  204 (504)
Q Consensus       126 e~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elq-ql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq  204 (504)
                      ...+.||..++..++.|..+++.+..+...|+..|..++.... ++...+..|..|..+|.+++.+++.....+.+    
T Consensus        34 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~----  109 (131)
T 3tnu_A           34 QSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKI----  109 (131)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            3455555556666666666666666666666666655444321 23444555566666666666655544333333    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010679          205 LQVMEKNYITMATEVEKLRAE  225 (504)
Q Consensus       205 lqemek~L~sme~EiekLraE  225 (504)
                         +-.-...++.||..-++-
T Consensus       110 ---Ll~vKl~Ld~EIatYRkL  127 (131)
T 3tnu_A          110 ---LLDVKTRLEQEIATYRRL  127 (131)
T ss_dssp             ---HHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHh
Confidence               333333444555544443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=97.20  E-value=0.014  Score=49.58  Aligned_cols=47  Identities=6%  Similarity=-0.004  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR  223 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLr  223 (504)
                      |..+..+++.+...|...+..+.+..+...+.+..+..|.+.|+-|+
T Consensus        53 ~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE   99 (101)
T 3u1c_A           53 LRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33334444444444444445555555555666666666666666554

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=97.13  E-value=0.0064  Score=52.00  Aligned_cols=39  Identities=10%  Similarity=0.239  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010679          145 AREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQE  183 (504)
Q Consensus       145 erqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqE  183 (504)
                      .+.....++++|+.++.+.+.++.+|+.|+++++..+..
T Consensus        39 aL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~D   77 (110)
T 2v4h_A           39 ALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKAD   77 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444443333

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=97.12  E-value=0.3  Score=51.73  Aligned_cols=32  Identities=9%  Similarity=0.168  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          199 NDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       199 ~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      ..|.++++++++.|...+..|..|..+..++.
T Consensus       238 e~LLkkh~~le~~l~~~~~~I~~L~~qA~~l~  269 (450)
T 3r6n_A          238 LEQIKELEKEREKILEYKRQVQNLVNKSKKIV  269 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45556666667777777777777777666654

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=97.09  E-value=0.22  Score=49.39  Aligned_cols=46  Identities=22%  Similarity=0.329  Sum_probs=20.6

Q ss_pred             CCChHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 010679           45 MPPPEVMEQKIASQHVEMQK----LATE-NQRLAATHGTLRQELAAAQHEL   90 (504)
Q Consensus        45 ~p~~~~LEqeLe~~~eEIq~----Le~e-~qrLe~qi~~LkqELa~lqqEL   90 (504)
                      .++.+.|.++|....++++.    ...+ .+++..+++.++++|.-..+++
T Consensus        10 ~~~~e~lr~~l~~~~eel~~~L~P~~~~l~~~l~~~le~lr~~L~Py~~el   60 (273)
T 3s84_A           10 AKDSEKLKEEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQL   60 (273)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555444444432    2222 2345555556666555444443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=97.08  E-value=0.018  Score=48.82  Aligned_cols=53  Identities=17%  Similarity=0.166  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl  229 (504)
                      |..|+..++.++.+++.....+......+...++.....+.++..|.+.|.-+
T Consensus        46 i~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll   98 (101)
T 3u59_A           46 QQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444555555555555555555443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=97.07  E-value=0.025  Score=47.87  Aligned_cols=49  Identities=6%  Similarity=0.092  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR  223 (504)
Q Consensus       175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLr  223 (504)
                      ..|..+..+++.+...+...+..+....+.....+..+.+|.+.|+-|+
T Consensus        51 kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE   99 (101)
T 3u59_A           51 KKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3344444444444444444444555555555556666666666665553

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=97.01  E-value=0.0038  Score=51.56  Aligned_cols=49  Identities=22%  Similarity=0.319  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          116 AKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (504)
Q Consensus       116 ~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~  164 (504)
                      .+++.|+.....++.++..++.++..+.-.+.+|+.+++.|+.+|.-++
T Consensus        35 ~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk   83 (86)
T 3swk_A           35 EKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK   83 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567777777888899999999999999999999999999999887654

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=96.99  E-value=0.025  Score=47.63  Aligned_cols=57  Identities=9%  Similarity=0.127  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       175 ~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      .+|..++.+...+..+-+...+.+..+.-++.++.+.+.++...+.-....|++|++
T Consensus        39 ~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K   95 (96)
T 3q8t_A           39 ENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK   95 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344445555555555444555555666666666666666666666666666666654

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=96.97  E-value=0.027  Score=48.28  Aligned_cols=74  Identities=12%  Similarity=0.226  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010679          134 KSKTEAQNLVVAREELIAKVHQLTQDL-QRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV  207 (504)
Q Consensus       134 qLr~ELqeL~aerqeL~aqvq~L~~EL-q~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqe  207 (504)
                      ..+....++...+.+|..+++.++.+. .+++....+|..++.+|..-..|++.++..++........+...+..
T Consensus        19 ~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~   93 (107)
T 2no2_A           19 MARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAE   93 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444444222 23344444555555556655555555555555444444444444433

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=96.97  E-value=0.018  Score=60.60  Aligned_cols=30  Identities=13%  Similarity=0.194  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          201 HLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       201 l~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      .+++++++|.++.+++.+|+.++++|+.++
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (471)
T 3mq9_A          441 GQKKVEELEGEITTLNHKLQDASAEVERLR  470 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            335666777777777777777777777653

>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C

Probab=96.97  E-value=0.28  Score=46.87  Aligned_cols=30  Identities=13%  Similarity=0.216  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          197 FYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (504)
Q Consensus       197 ~~~el~eqlqemek~L~sme~EiekLraEL  226 (504)
                      ...++...+..+...+......++.+...+
T Consensus       180 ~~~~i~~~~~~~~~~~~e~s~~i~~i~~~i  209 (213)
T 3g67_A          180 LLQEVRNSLDTSKESLSEKSAEIDSATKVL  209 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333444444443333

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=96.96  E-value=0.29  Score=47.05  Aligned_cols=15  Identities=20%  Similarity=0.222  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHhc
Q 010679          215 MATEVEKLRAELMNA  229 (504)
Q Consensus       215 me~EiekLraELekl  229 (504)
                      +.+.+..|...|.++
T Consensus       235 ~~~~~~~L~~~l~~~  249 (251)
T 2fic_A          235 MSKLNQNLNDVLVGL  249 (251)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            455666666666655

>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C

Probab=96.89  E-value=0.32  Score=46.44  Aligned_cols=38  Identities=16%  Similarity=0.216  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       191 Le~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      ++.....+.++.+.++++...+..+...+++....+..
T Consensus       167 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~e~s~~i~~  204 (213)
T 3g67_A          167 LQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDS  204 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444444444433

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=96.82  E-value=0.008  Score=50.09  Aligned_cols=66  Identities=20%  Similarity=0.263  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010679          104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ  169 (504)
Q Consensus       104 ~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqq  169 (504)
                      ++.+|.+|++.+.+++.++..+.-|+..++--+.+...-++.|..+..+++.|..++..++.+..+
T Consensus        21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~   86 (94)
T 3jsv_C           21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK   86 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            566677777778888888777888888888888888777777877777777777777666655443

>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A

Probab=96.79  E-value=0.32  Score=44.84  Aligned_cols=29  Identities=14%  Similarity=0.122  Sum_probs=13.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010679          170 IPALLSELESLRQEYHHCRGTYEYEKKFY  198 (504)
Q Consensus       170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~  198 (504)
                      +..+..+.+.++.++...+..++.+....
T Consensus       141 v~~ll~~h~~~~~el~~~~~~i~~l~~~~  169 (213)
T 1cun_A          141 IQGLLKKHEAFETDFTVHKDRVNDVCANG  169 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555554444444444333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.79  E-value=0.0054  Score=54.59  Aligned_cols=38  Identities=8%  Similarity=0.108  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~  164 (504)
                      .+..++..|..++.+-+..+.+.+.++..+..+|..|.
T Consensus        43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT   80 (135)
T 2e7s_A           43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT   80 (135)
T ss_dssp             THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444455555555555555554443

>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1

Probab=96.67  E-value=0.38  Score=44.59  Aligned_cols=58  Identities=7%  Similarity=0.023  Sum_probs=23.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 010679          170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES----LQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eq----lqemek~L~sme~EiekLraELe  227 (504)
                      +..+..+.+.++.+|......++.+......+...    ...+...+..+....+.|...++
T Consensus       144 v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~  205 (216)
T 1u5p_A          144 VQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAA  205 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444445444444444433333333221    12233444444444444444433

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=96.66  E-value=0.067  Score=46.10  Aligned_cols=30  Identities=13%  Similarity=0.221  Sum_probs=13.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 010679          170 IPALLSELESLRQEYHHCRGTYEYEKKFYN  199 (504)
Q Consensus       170 l~~L~~EIeaLrqELq~LR~eLe~~kk~~~  199 (504)
                      +.+|+.||..|.++|+++..+++.+++...
T Consensus        73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~  102 (121)
T 3mq7_A           73 VEELEGEITTLNHKLQDASAEVERLRRENQ  102 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            344444444454544444444444443333

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=96.65  E-value=0.01  Score=64.88  Aligned_cols=123  Identities=14%  Similarity=0.200  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hHH
Q 010679          102 SERELQMRNLTEKIAKMEAELKTAEP----VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI----PAL  173 (504)
Q Consensus       102 ae~E~eL~eL~eki~kLEaEL~ele~----LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql----~~L  173 (504)
                      .+.+.+..+|..++.+++++.+....    ....+..|..++..++.+...|..+..++++++++|.......    ..|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l  410 (575)
T 2i1j_A          331 ERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKL  410 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            35566677777777777777654332    2222334444455555555555555555555555444322111    112


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      .+++.++..++.++..+.       ..-.++...+++++..+....++.+.+|..+..
T Consensus       411 ~~~~~~~~~~~~~~~~~~-------~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~~  461 (575)
T 2i1j_A          411 EDEIRAKQEEVSRIQQEV-------ELKDSETRRLQEEVEDARRKQDEAAAALLAATT  461 (575)
T ss_dssp             --------------------------------------CHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            223333333333333332       222223333444444455555566666655433

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.62  E-value=0.098  Score=43.93  Aligned_cols=29  Identities=7%  Similarity=0.190  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          133 QKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (504)
Q Consensus       133 eqLr~ELqeL~aerqeL~aqvq~L~~ELq  161 (504)
                      ..|..++.+.+..+.+.+.++..+..+|.
T Consensus        29 ~~L~~~l~eE~~~R~~aE~~~~~ie~ElE   57 (97)
T 2eqb_B           29 KRLREDIAKENELRTKAEEEADKLNKEVE   57 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444444443333

>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2

Probab=96.58  E-value=0.019  Score=58.98  Aligned_cols=23  Identities=17%  Similarity=0.195  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010679          203 ESLQVMEKNYITMATEVEKLRAE  225 (504)
Q Consensus       203 eqlqemek~L~sme~EiekLraE  225 (504)
                      ..+......++.|......|..+
T Consensus       264 ~~I~~Ai~al~~l~~~W~~m~~~  286 (346)
T 2nrj_A          264 KALDDAINALTYMSTQWHDLDSQ  286 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}

Probab=96.57  E-value=0.38  Score=47.39  Aligned_cols=19  Identities=0%  Similarity=0.247  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010679          208 MEKNYITMATEVEKLRAEL  226 (504)
Q Consensus       208 mek~L~sme~EiekLraEL  226 (504)
                      +...|..+....+.|....
T Consensus       296 i~~~l~~L~~~w~~l~~~w  314 (323)
T 3edv_A          296 IKEKLLQLTEKRKEMIDKW  314 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444443

>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2

Probab=96.55  E-value=0.07  Score=54.68  Aligned_cols=68  Identities=15%  Similarity=0.163  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Q 010679           72 LAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK----TAEPVKLEFQKSKTEA  139 (504)
Q Consensus        72 Le~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~----ele~LkaELeqLr~EL  139 (504)
                      |...+..|+..+...+.+...+...|..++..+......+......+...|.    .+..|+.+|++++.++
T Consensus       121 l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I  192 (346)
T 2nrj_A          121 LKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSV  192 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444333333444444444433332    2345555555544443

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=96.54  E-value=0.014  Score=48.64  Aligned_cols=35  Identities=9%  Similarity=0.256  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010679          148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQ  182 (504)
Q Consensus       148 eL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrq  182 (504)
                      .....+++|+.++.+.+.++.+++.|+++++..+.
T Consensus        20 ~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~   54 (94)
T 3jsv_C           20 AKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKA   54 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444554444444444444444433333

>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}

Probab=96.53  E-value=0.53  Score=44.11  Aligned_cols=132  Identities=8%  Similarity=0.078  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHH
Q 010679           68 ENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE-FQKSKTEAQNLVVAR  146 (504)
Q Consensus        68 e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaE-LeqLr~ELqeL~aer  146 (504)
                      ..+.+...|..+..+|+.....|..+......+..+..   ..+.+++..+......+..+..+ ...|. .+.++..+.
T Consensus        39 ~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~~~---~~i~~rl~~l~~~~~~L~~~a~~R~~~L~-~L~~f~~~~  114 (210)
T 3pdy_A           39 SVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATR---GAYRDCLGRLDLQYAKLLNSSKARLRSLE-SLHSFVAAA  114 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            36677778888888888888888888776655443211   12444445554444433322211 11222 455555555


Q ss_pred             HHHHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010679          147 EELIAKVHQLTQDLQRAH--TDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE  203 (504)
Q Consensus       147 qeL~aqvq~L~~ELq~l~--~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~e  203 (504)
                      .++...+.+.+..+....  .++..+..++...+.++.||...+..+..+......+.+
T Consensus       115 ~~~~~Wl~eke~~~~s~d~g~~~~~v~~l~~k~~~f~~el~~~~~~v~~l~~~~~~Ll~  173 (210)
T 3pdy_A          115 TKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLR  173 (210)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccccCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            566665555554443211  123334555555566666666555555555544444443

>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*

Probab=96.53  E-value=0.15  Score=53.93  Aligned_cols=43  Identities=14%  Similarity=0.195  Sum_probs=19.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           45 MPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI   92 (504)
Q Consensus        45 ~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~   92 (504)
                      .+.+..+.++++..+...+..     .+...++.++.+++.++.||..
T Consensus       290 ilt~~elkqrqeee~r~~qew-----~~~hp~~~Aer~~e~a~ael~~  332 (551)
T 2b5u_A          290 VLSPDQVKQRQDEENRRQQEW-----DATHPVEAAERNYERARAELNQ  332 (551)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHh-----hhcCcHHHHHHHHHHHHHHHHH
Confidence            456666666655444333322     2233334444444444444443

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=96.52  E-value=0.09  Score=45.06  Aligned_cols=33  Identities=30%  Similarity=0.308  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010679          116 AKMEAELKTAEPVKLEFQKSKTEAQNLVVAREE  148 (504)
Q Consensus       116 ~kLEaEL~ele~LkaELeqLr~ELqeL~aerqe  148 (504)
                      .+++.++..++.++.+|.....+|..++..+..
T Consensus        47 ~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~   79 (107)
T 2no2_A           47 RKTQEQLEVLESLKQELATSQRELQVLQGSLET   79 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555554443333

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=96.51  E-value=0.064  Score=46.18  Aligned_cols=25  Identities=20%  Similarity=0.209  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          133 QKSKTEAQNLVVAREELIAKVHQLT  157 (504)
Q Consensus       133 eqLr~ELqeL~aerqeL~aqvq~L~  157 (504)
                      ++|+.||.+|..+++++.++++.|.
T Consensus        74 qeLqgEI~~Lnq~Lq~a~ae~erlr   98 (121)
T 3mq7_A           74 EELEGEITTLNHKLQDASAEVERLR   98 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=96.51  E-value=0.036  Score=58.36  Aligned_cols=69  Identities=13%  Similarity=0.192  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT-DVQQIPALLSELESLRQEYHHCRGTYEYEK  195 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~-elqql~~L~~EIeaLrqELq~LR~eLe~~k  195 (504)
                      .|+.+|.+++..+.+++.+.......|-.|+..|.+... .+++|+++..||..|.++|++++.+++.++
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (471)
T 3mq9_A          401 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR  470 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455666666666666666666655566666655543222 234677777888888888888888877654

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=96.49  E-value=0.031  Score=48.24  Aligned_cols=17  Identities=18%  Similarity=0.083  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679          105 ELQMRNLTEKIAKMEAE  121 (504)
Q Consensus       105 E~eL~eL~eki~kLEaE  121 (504)
                      ..++..|.+++..-|..
T Consensus        44 k~qV~~L~~~~q~sE~~   60 (112)
T 1x79_B           44 SHQISALVLRAQASEIL   60 (112)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444433

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=96.49  E-value=0.048  Score=48.79  Aligned_cols=10  Identities=40%  Similarity=0.600  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q 010679          217 TEVEKLRAEL  226 (504)
Q Consensus       217 ~EiekLraEL  226 (504)
                      .++.+|+.++
T Consensus       124 ~~~~~le~~~  133 (138)
T 3hnw_A          124 KNIVKLETEL  133 (138)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=96.46  E-value=0.054  Score=46.70  Aligned_cols=28  Identities=11%  Similarity=0.185  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          204 SLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       204 qlqemek~L~sme~EiekLraELekle~  231 (504)
                      ++..+....+.+..+|.+|..+=+.|..
T Consensus        78 qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G  105 (112)
T 1x79_B           78 QMAVLMQSREQVSEELVRLQKDNDSLQG  105 (112)
T ss_dssp             HHHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence            3444444444445555555555444443

>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.72  Score=44.60  Aligned_cols=15  Identities=7%  Similarity=0.262  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679          150 IAKVHQLTQDLQRAH  164 (504)
Q Consensus       150 ~aqvq~L~~ELq~l~  164 (504)
                      ...++.|..+|.+++
T Consensus       110 R~~R~~l~~~I~kLk  124 (234)
T 3plt_A          110 RDRKEKITDEIAHLK  124 (234)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            333444444444443

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=96.44  E-value=0.17  Score=53.90  Aligned_cols=18  Identities=11%  Similarity=0.224  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010679           61 EMQKLATENQRLAATHGT   78 (504)
Q Consensus        61 EIq~Le~e~qrLe~qi~~   78 (504)
                      +|..+..++..++.+...
T Consensus        40 el~~f~keRa~iE~eYAk   57 (486)
T 3haj_A           40 DLMNCLHERARIEKAYAQ   57 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444445555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.43  E-value=0.032  Score=59.02  Aligned_cols=38  Identities=8%  Similarity=-0.011  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT  214 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~s  214 (504)
                      .+..+.++++++++.+.+++.+.++..++.++...++.
T Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (487)
T 3oja_A          437 WDMYQHKETQLAEENARLKKLNGEADLALASANATLQE  474 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence            34444444444444444444444444444444444433

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=96.42  E-value=0.12  Score=44.52  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010679           63 QKLATENQRLAATHGTLRQELAA   85 (504)
Q Consensus        63 q~Le~e~qrLe~qi~~LkqELa~   85 (504)
                      ..|...+.+|..+++.++.++..
T Consensus         6 rdL~~~~~~L~~E~e~~k~K~~~   28 (111)
T 2v66_B            6 RDLQADNQRLKYEVEALKEKLEH   28 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555444443

>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}

Probab=96.39  E-value=0.33  Score=45.39  Aligned_cols=21  Identities=29%  Similarity=0.328  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010679           71 RLAATHGTLRQELAAAQHELQ   91 (504)
Q Consensus        71 rLe~qi~~LkqELa~lqqEL~   91 (504)
                      .+..++..++.+|......+.
T Consensus        50 ~ll~~H~~l~~ei~~~~~~~~   70 (218)
T 3fb2_A           50 ALLERHQEHRTEIDARAGTFQ   70 (218)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHH
Confidence            344444555555544333333

>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}

Probab=96.39  E-value=1  Score=45.63  Aligned_cols=17  Identities=6%  Similarity=0.151  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKLAT   67 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le~   67 (504)
                      |-..|......|..+..
T Consensus        39 l~~~~n~~~~~l~~~i~   55 (341)
T 3zx6_A           39 LAKSIERLRRSLMRTVG   55 (341)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444443333

>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A

Probab=96.37  E-value=0.43  Score=44.62  Aligned_cols=18  Identities=6%  Similarity=0.180  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010679          139 AQNLVVAREELIAKVHQL  156 (504)
Q Consensus       139 LqeL~aerqeL~aqvq~L  156 (504)
                      +.+......++...+++.
T Consensus       110 ~~~F~~~~~e~~~Wl~ek  127 (218)
T 3edu_A          110 LHRYFYTGAEILGLIDEK  127 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444443

>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1

Probab=96.32  E-value=0.9  Score=44.51  Aligned_cols=26  Identities=12%  Similarity=0.138  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010679          172 ALLSELESLRQEYHHCRGTYEYEKKF  197 (504)
Q Consensus       172 ~L~~EIeaLrqELq~LR~eLe~~kk~  197 (504)
                      .+..+.+.++.++...+..++.+...
T Consensus       252 ~ll~~h~~~~~el~~~~~~v~~l~~~  277 (322)
T 1u4q_A          252 GLLKKHEAFETDFTVHKDRVNDVCAN  277 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444443333

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=96.32  E-value=0.056  Score=45.18  Aligned_cols=35  Identities=17%  Similarity=0.189  Sum_probs=29.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQ   81 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lkq   81 (504)
                      +...|+.++....++++.|+.+|..|+.++..+++
T Consensus        10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~   44 (93)
T 3s4r_A           10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG   44 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46789999999999999999999999888876643

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=96.31  E-value=0.12  Score=54.86  Aligned_cols=6  Identities=50%  Similarity=1.497  Sum_probs=2.7

Q ss_pred             CCCCCC
Q 010679          262 YEDGYG  267 (504)
Q Consensus       262 y~~~y~  267 (504)
                      |-.|||
T Consensus       274 Yk~GFG  279 (464)
T 1m1j_B          274 YKRGFG  279 (464)
T ss_dssp             HHHCEE
T ss_pred             HHHHhC
Confidence            444444

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=96.27  E-value=0.18  Score=42.31  Aligned_cols=24  Identities=8%  Similarity=0.235  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          137 TEAQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       137 ~ELqeL~aerqeL~aqvq~L~~EL  160 (504)
                      .+|.++..+...+..++..++.+.
T Consensus        25 ~eL~~lEke~~~l~~el~~le~E~   48 (96)
T 3q8t_A           25 QELEDVEKNRKVVAENLEKVQAEA   48 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=96.24  E-value=0.99  Score=44.05  Aligned_cols=12  Identities=0%  Similarity=-0.061  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHhc
Q 010679          218 EVEKLRAELMNA  229 (504)
Q Consensus       218 EiekLraELekl  229 (504)
                      -++.|...++.+
T Consensus       253 ~~~~l~~~~~~i  264 (305)
T 2efl_A          253 CLDGIVKAAESI  264 (305)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhc
Confidence            344455555444

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=96.24  E-value=0.14  Score=54.48  Aligned_cols=12  Identities=8%  Similarity=0.241  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHH
Q 010679           72 LAATHGTLRQEL   83 (504)
Q Consensus        72 Le~qi~~LkqEL   83 (504)
                      +..++++|+..|
T Consensus        98 V~~~LqeLe~~l  109 (464)
T 1m1j_B           98 VKPVLRDLKDRV  109 (464)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHH
Confidence            333444443333

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=96.23  E-value=0.018  Score=50.34  Aligned_cols=16  Identities=31%  Similarity=0.405  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          147 EELIAKVHQLTQDLQR  162 (504)
Q Consensus       147 qeL~aqvq~L~~ELq~  162 (504)
                      .+|..+|..|+.+|..
T Consensus        43 ~ql~~~i~~Le~eL~e   58 (120)
T 3i00_A           43 LQLKGHVSELEADLAE   58 (120)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444455555555543

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=96.20  E-value=0.024  Score=48.56  Aligned_cols=29  Identities=14%  Similarity=0.249  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          200 DHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       200 el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      .+.+.+..+++++..+..++++++.+|..
T Consensus        81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~~  109 (117)
T 2zqm_A           81 TLEVRLNALERQEKKLNEKLKELTAQIQS  109 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444455555555555555544

>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.71  Score=44.62  Aligned_cols=27  Identities=11%  Similarity=0.179  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          132 FQKSKTEAQNLVVAREELIAKVHQLTQ  158 (504)
Q Consensus       132 LeqLr~ELqeL~aerqeL~aqvq~L~~  158 (504)
                      |...+..++.++..++.|..++..|+.
T Consensus        99 IR~~E~svqp~R~~R~~l~~~I~kLk~  125 (234)
T 3plt_A           99 IRNIEASVQPSRDRKEKITDEIAHLKY  125 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            344445556666666666666666554

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=96.17  E-value=0.47  Score=50.43  Aligned_cols=8  Identities=38%  Similarity=0.414  Sum_probs=3.3

Q ss_pred             HHHHHHHH
Q 010679          203 ESLQVMEK  210 (504)
Q Consensus       203 eqlqemek  210 (504)
                      +.+|+|++
T Consensus       231 ~~lQ~lEe  238 (486)
T 3haj_A          231 EQCQQFEE  238 (486)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33444443

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=96.17  E-value=1  Score=43.91  Aligned_cols=13  Identities=8%  Similarity=0.069  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHhcc
Q 010679          218 EVEKLRAELMNAP  230 (504)
Q Consensus       218 EiekLraELekle  230 (504)
                      .++.|+..|+.+.
T Consensus       246 ~~~~l~~~~~~id  258 (301)
T 2efk_A          246 CLEGMKVAANAVD  258 (301)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcC
Confidence            3444555555443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.1  Score=47.12  Aligned_cols=31  Identities=19%  Similarity=-0.038  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010679          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLE  203 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~e  203 (504)
                      ++.|+..|+-++..++..+..+++++..|.+
T Consensus       101 l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~  131 (152)
T 3a7p_A          101 LNAALISGTIENNVLQQKLSDLKKEHSQLVA  131 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444433

>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1

Probab=96.16  E-value=0.8  Score=42.27  Aligned_cols=27  Identities=19%  Similarity=0.351  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679           69 NQRLAATHGTLRQELAAAQHELQILHG   95 (504)
Q Consensus        69 ~qrLe~qi~~LkqELa~lqqEL~~L~~   95 (504)
                      .+.+...|..++.+|...+..+..+..
T Consensus        35 v~~ll~~h~~~~~ei~~~~~~~~~~~~   61 (214)
T 1s35_A           35 AEQLLQQHAGIKDEIDGHQDSYQRVKE   61 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            344455555666666555555444443

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=96.16  E-value=0.025  Score=49.46  Aligned_cols=17  Identities=18%  Similarity=0.372  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679          105 ELQMRNLTEKIAKMEAE  121 (504)
Q Consensus       105 E~eL~eL~eki~kLEaE  121 (504)
                      +..+..|..+|..|+++
T Consensus        39 q~~v~ql~~~i~~Le~e   55 (120)
T 3i00_A           39 QRVVLQLKGHVSELEAD   55 (120)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444444

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.03  Score=50.62  Aligned_cols=9  Identities=22%  Similarity=0.117  Sum_probs=3.4

Q ss_pred             HHHHHHHHh
Q 010679          220 EKLRAELMN  228 (504)
Q Consensus       220 ekLraELek  228 (504)
                      .++..+.++
T Consensus       135 ~rk~qEAe~  143 (152)
T 3a7p_A          135 KKTEKETEA  143 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333334333

>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*

Probab=96.09  E-value=0.35  Score=51.17  Aligned_cols=20  Identities=10%  Similarity=0.225  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHhhhcc
Q 010679           80 RQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        80 kqELa~lqqEL~~L~~~L~~   99 (504)
                      +..++.++.++++++++|..
T Consensus       313 ~hp~~~Aer~~e~a~ael~~  332 (551)
T 2b5u_A          313 THPVEAAERNYERARAELNQ  332 (551)
T ss_dssp             HCHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHH
Confidence            35667777777777777654

>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}

Probab=96.07  E-value=0.52  Score=39.28  Aligned_cols=44  Identities=14%  Similarity=0.223  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L   93 (504)
                      .+|.+|+.....|-.|..+..++..-+..+...+..-.+-+..-
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~N   46 (114)
T 2xzr_A            3 QIEDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKN   46 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhc
Confidence            45666666666666666666666666665555554444444433

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=96.06  E-value=1.9  Score=45.64  Aligned_cols=31  Identities=13%  Similarity=0.128  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010679          205 LQVMEKNYITMATEVEKLRAELMNAPNVDRR  235 (504)
Q Consensus       205 lqemek~L~sme~EiekLraELekle~~~~~  235 (504)
                      .++|.+++..++++|...+..|..|.+..+.
T Consensus       237 ~e~LLkkh~~le~~l~~~~~~I~~L~~qA~~  267 (450)
T 3r6n_A          237 LLEQIKELEKEREKILEYKRQVQNLVNKSKK  267 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777888889999999999888775544

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=96.06  E-value=0.13  Score=43.76  Aligned_cols=35  Identities=9%  Similarity=0.051  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010679          178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNY  212 (504)
Q Consensus       178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L  212 (504)
                      +.|...++.+..+++.+.+.+..+.+++.+++.+|
T Consensus        73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l  107 (117)
T 2zqm_A           73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQI  107 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444333

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=96.05  E-value=0.7  Score=46.26  Aligned_cols=24  Identities=4%  Similarity=0.098  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           60 VEMQKLATENQRLAATHGTLRQEL   83 (504)
Q Consensus        60 eEIq~Le~e~qrLe~qi~~LkqEL   83 (504)
                      ++|.....++..++.+....-..|
T Consensus        37 ~el~~f~keRa~iE~eYak~L~kL   60 (337)
T 2x3v_A           37 NDLMSCVQERAKIEKAYAQQLTDW   60 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555655554433333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=96.02  E-value=0.47  Score=40.82  Aligned_cols=13  Identities=15%  Similarity=0.276  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHH
Q 010679          108 MRNLTEKIAKMEA  120 (504)
Q Consensus       108 L~eL~eki~kLEa  120 (504)
                      .+.|+.+...|..
T Consensus         5 ~rdL~~~~~~L~~   17 (111)
T 2v66_B            5 NRDLQADNQRLKY   17 (111)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444443333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.00  E-value=0.013  Score=52.11  Aligned_cols=8  Identities=25%  Similarity=0.164  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010679          200 DHLESLQV  207 (504)
Q Consensus       200 el~eqlqe  207 (504)
                      .+.+++.+
T Consensus       107 ~L~~ql~e  114 (135)
T 2e7s_A          107 RLTEQLRE  114 (135)
T ss_dssp             HHHHTTTH
T ss_pred             HHHHHHHH
Confidence            33333333

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=95.95  E-value=0.0056  Score=66.93  Aligned_cols=38  Identities=13%  Similarity=0.112  Sum_probs=9.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA  163 (504)
Q Consensus       126 e~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l  163 (504)
                      ..++.+....+.+|.+.......|..+++.++.+-..|
T Consensus       345 ~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l  382 (575)
T 2i1j_A          345 RQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEEL  382 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------------------
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555544444444444444444443333

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=95.93  E-value=1.4  Score=43.04  Aligned_cols=13  Identities=8%  Similarity=0.013  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHH
Q 010679          211 NYITMATEVEKLR  223 (504)
Q Consensus       211 ~L~sme~EiekLr  223 (504)
                      .++.|...++.+.
T Consensus       246 ~~~~l~~~~~~id  258 (301)
T 2efk_A          246 CLEGMKVAANAVD  258 (301)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcC
Confidence            3344445444443

>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1

Probab=95.90  E-value=0.58  Score=38.45  Aligned_cols=80  Identities=20%  Similarity=0.165  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          146 REELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE  225 (504)
Q Consensus       146 rqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraE  225 (504)
                      +.+|..+.++|+.-+..++.+..+   -...|..++..|++.-..|+.++-...+++.++..+++...-++-.+..+..+
T Consensus        20 ~eeL~kQk~eL~~~l~~l~~e~~~---R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLaE~~De   96 (101)
T 1d7m_A           20 REQLIKQKDQLNSLLASLESEGAE---REKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAEAIDE   96 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Confidence            334444444444444444333211   11224444445555555555566666677777777777666666655555555


Q ss_pred             HHh
Q 010679          226 LMN  228 (504)
Q Consensus       226 Lek  228 (504)
                      -+.
T Consensus        97 k~r   99 (101)
T 1d7m_A           97 KSK   99 (101)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            443

>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A

Probab=95.89  E-value=0.93  Score=41.62  Aligned_cols=25  Identities=16%  Similarity=0.208  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDH  201 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el  201 (504)
                      +..+..+++.+..+++.....+..+
T Consensus       141 v~~ll~~h~~~~~el~~~~~~i~~l  165 (213)
T 1cun_A          141 IQGLLKKHEAFETDFTVHKDRVNDV  165 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444333333333

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=95.89  E-value=0.15  Score=43.23  Aligned_cols=39  Identities=13%  Similarity=0.171  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~  165 (504)
                      .++.++++++.++.+|...+.++..++..+...+..+..
T Consensus         7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~   45 (112)
T 1l8d_A            7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK   45 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344455555666666666666666666666666665543

>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}

Probab=95.89  E-value=0.03  Score=50.15  Aligned_cols=41  Identities=15%  Similarity=0.161  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV  167 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~el  167 (504)
                      .++.+++..+..+..+..+++.+..++..|+.+++++..+.
T Consensus        70 ~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEek  110 (146)
T 2xnx_M           70 AITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEK  110 (146)
T ss_dssp             THHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            44455555555555555555555566666666666554443

>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A

Probab=95.83  E-value=0.26  Score=51.61  Aligned_cols=59  Identities=15%  Similarity=0.205  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          105 ELQMRNLTEKIAKMEAELKT-AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA  163 (504)
Q Consensus       105 E~eL~eL~eki~kLEaEL~e-le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l  163 (504)
                      +.+.......+.++-.+|+. +.-|+..|...-..|.-|+..+.++..+++.|+.+|...
T Consensus        99 ~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q  158 (491)
T 1m1j_A           99 LEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIK  158 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444555444442 334444444333556666666777777777777776543

>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}

Probab=95.79  E-value=0.12  Score=46.94  Aligned_cols=18  Identities=33%  Similarity=0.514  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010679           73 AATHGTLRQELAAAQHEL   90 (504)
Q Consensus        73 e~qi~~LkqELa~lqqEL   90 (504)
                      ...-...+++|+.+--++
T Consensus        38 assDa~vrq~Ia~LP~eV   55 (152)
T 4fla_A           38 ASGDATVRQKIASLPQEV   55 (152)
T ss_dssp             HHHHHHHHHHHHTSCGGG
T ss_pred             ccchHHHHHHHHcCCccc
Confidence            333344455555444333

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=95.76  E-value=0.15  Score=42.74  Aligned_cols=25  Identities=4%  Similarity=0.183  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          203 ESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       203 eqlqemek~L~sme~EiekLraELe  227 (504)
                      ..+..+++++..+..++++++..|.
T Consensus        79 ~~i~~le~~~~~~~~~l~~lk~~l~  103 (107)
T 1fxk_A           79 LREKTIERQEERVMKKLQEMQVNIQ  103 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.75  E-value=0.25  Score=44.09  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          196 KFYNDHLESLQVMEKNYITMATEV  219 (504)
Q Consensus       196 k~~~el~eqlqemek~L~sme~Ei  219 (504)
                      +.+.++++++.++++++..++.++
T Consensus       110 ~e~~~l~~~~~~l~~~~~~le~~~  133 (138)
T 3hnw_A          110 KEIKELKSEINKYQKNIVKLETEL  133 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333344443333333

>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}

Probab=95.71  E-value=1.6  Score=43.52  Aligned_cols=50  Identities=24%  Similarity=0.256  Sum_probs=22.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhh
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQE---LAAAQHELQILHGQI   97 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqE---La~lqqEL~~L~~~L   97 (504)
                      ++.|+..++.+.+....+..+.++|..++..|...   +..++.-|.+|....
T Consensus         5 ~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~   57 (302)
T 3ibp_A            5 IASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQC   57 (302)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHh
Confidence            34555555555555555555555555555555443   334455555555554

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=95.71  E-value=0.18  Score=42.74  Aligned_cols=10  Identities=10%  Similarity=0.072  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 010679          144 VAREELIAKV  153 (504)
Q Consensus       144 aerqeL~aqv  153 (504)
                      .++.++...+
T Consensus        31 ~~i~~l~~~l   40 (112)
T 1l8d_A           31 NKIGDLKTAI   40 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A

Probab=95.63  E-value=1.3  Score=43.54  Aligned_cols=20  Identities=5%  Similarity=-0.039  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHH
Q 010679          176 ELESLRQEYHHCRGTYEYEK  195 (504)
Q Consensus       176 EIeaLrqELq~LR~eLe~~k  195 (504)
                      +.+.++.+|...+..++.+.
T Consensus       257 ~~~~~e~~l~~~~~~v~~l~  276 (326)
T 3kbt_A          257 VHTAFERDVHLLGVQVQQFQ  276 (326)
T ss_dssp             ----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444333

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=95.60  E-value=0.38  Score=47.68  Aligned_cols=20  Identities=10%  Similarity=0.159  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010679           60 VEMQKLATENQRLAATHGTL   79 (504)
Q Consensus        60 eEIq~Le~e~qrLe~qi~~L   79 (504)
                      ++|.....++..++.+....
T Consensus        46 ~el~~f~keRa~iE~eYak~   65 (312)
T 3abh_A           46 SDLMNCLHERARIEKAYAQQ   65 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555443

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=95.59  E-value=0.15  Score=42.73  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010679          178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN  211 (504)
Q Consensus       178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~  211 (504)
                      ..|...++.+..+++.+.+.+..+.+++.+++.+
T Consensus        68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~  101 (107)
T 1fxk_A           68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVN  101 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444433

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=95.58  E-value=0.29  Score=50.58  Aligned_cols=133  Identities=19%  Similarity=0.223  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV  128 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~L  128 (504)
                      +.+-.+|...+.+.+....+.++|.++...+.++|+..++-++...+.+.-+    +.++ .++++..+---+.-..+..
T Consensus       122 e~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f----~~q~-~~~e~~~~~~~~~~~~~~~  196 (373)
T 3hhm_B          122 EAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIF----EEQC-QTQERYSKEYIEKFKREGN  196 (373)
T ss_dssp             CGGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHhhhhhhhhhhhcC
Confidence            3444555566666666777777777777777777776666555555544332    2222 1122111000000001111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Q 010679          129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRG  189 (504)
Q Consensus       129 kaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~  189 (504)
                      ..|+..+..-.+.|+..+++|....++|+++|.....+.   .++..++..|+-+|..|+.
T Consensus       197 ~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~lkp~l~ql~k  254 (373)
T 3hhm_B          197 EKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEY---REIDKRMNSIKPDLIQLRK  254 (373)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhccChHHHHHHH
Confidence            223444444445555555555555555555554433332   3445566666666655554

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=95.55  E-value=1.5  Score=47.98  Aligned_cols=16  Identities=25%  Similarity=0.414  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          210 KNYITMATEVEKLRAE  225 (504)
Q Consensus       210 k~L~sme~EiekLraE  225 (504)
                      ++...|..||+.|+.+
T Consensus       567 ~~~~~~~~ei~~l~~~  582 (592)
T 1f5n_A          567 KESRIMKNEIQDLQTK  582 (592)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            3444555555555555

>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A

Probab=95.54  E-value=0.29  Score=51.28  Aligned_cols=12  Identities=17%  Similarity=0.434  Sum_probs=6.2

Q ss_pred             HHHHHHHHhccc
Q 010679          220 EKLRAELMNAPN  231 (504)
Q Consensus       220 ekLraELekle~  231 (504)
                      +.++++|+++..
T Consensus       180 e~~QKqLeQv~a  191 (491)
T 1m1j_A          180 DNIQKHLTQASS  191 (491)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhc
Confidence            445555555544

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A

Probab=95.52  E-value=3.4  Score=46.00  Aligned_cols=23  Identities=17%  Similarity=0.275  Sum_probs=12.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC
Q 010679            6 RIPPPHLRRPPPGPGMMHPDPFV   28 (504)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~   28 (504)
                      +||+...=-++++-.|+-|.||-
T Consensus       328 ~VP~~~~L~~i~~~~lvk~~~~~  350 (704)
T 2xs1_A          328 RVPDLKDLDPIGKATLVKSTPVN  350 (704)
T ss_dssp             CCCCGGGSCCCCCCCCCCCCCCC
T ss_pred             CCCCccccCCccCccccccCCCC
Confidence            46654222334555678777764

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.50  E-value=0.25  Score=41.49  Aligned_cols=30  Identities=13%  Similarity=0.158  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           54 KIASQHVEMQKLATENQRLAATHGTLRQEL   83 (504)
Q Consensus        54 eLe~~~eEIq~Le~e~qrLe~qi~~LkqEL   83 (504)
                      +++.++++|..|+.++..+..++..|..+|
T Consensus         6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l   35 (97)
T 2eqb_B            6 NYNQLKEDYNTLKRELSDRDDEVKRLREDI   35 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            444455555555444444444444443333

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=95.47  E-value=0.13  Score=46.43  Aligned_cols=36  Identities=11%  Similarity=0.189  Sum_probs=15.6

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM  215 (504)
Q Consensus       180 LrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sm  215 (504)
                      +..+|+++...++.....+.+|.+.+..+..+|.+|
T Consensus        85 ~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL  120 (147)
T 2b9c_A           85 IESDLERAEERAELSEGKCAELEEELKTVTNNLKSL  120 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333344444444444444444444444444444443

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=95.44  E-value=0.049  Score=53.87  Aligned_cols=35  Identities=9%  Similarity=0.094  Sum_probs=19.1

Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           42 FDMMPPPEVMEQKIASQHVEMQKLATENQRLAATH   76 (504)
Q Consensus        42 ~~~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi   76 (504)
                      |++-+.+..+-..+..+...|..+...+.+|...+
T Consensus        37 ~~~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~   71 (279)
T 2xhe_B           37 AQPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLH   71 (279)
T ss_dssp             ---CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555666666666666666665555555444

>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B

Probab=95.41  E-value=0.67  Score=42.75  Aligned_cols=54  Identities=17%  Similarity=0.220  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 010679          134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGT  190 (504)
Q Consensus       134 qLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~e  190 (504)
                      .+..-.+.|...+.+|......|..+|.....+.   ..+..++.+|+-+|..|+..
T Consensus        93 ~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~---relERemnsLKPeL~qL~K~  146 (170)
T 3l4q_C           93 RILLNSERLKSRIAEIHESRTKLEQELRAQASDN---REIDKRMNSLKPDLMQLRKI  146 (170)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCHHHHHHHHH
Confidence            3333344444444455555555555554333332   23445566666666555543

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=95.37  E-value=0.5  Score=47.74  Aligned_cols=20  Identities=10%  Similarity=0.159  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010679           60 VEMQKLATENQRLAATHGTL   79 (504)
Q Consensus        60 eEIq~Le~e~qrLe~qi~~L   79 (504)
                      ++|.....++..++.+....
T Consensus        46 ~el~~f~keRa~IE~eYak~   65 (350)
T 3aco_A           46 SDLMNCLHERARIEKAYAQQ   65 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555443

>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}

Probab=95.35  E-value=0.88  Score=42.88  Aligned_cols=87  Identities=9%  Similarity=0.083  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHH
Q 010679           69 NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKL-EFQKSKTEAQNLVVARE  147 (504)
Q Consensus        69 ~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~Lka-ELeqLr~ELqeL~aerq  147 (504)
                      .+.+...|..++.+|......+..+...-..+...   ....+.+++..+......+..+.. ....|. .+.+......
T Consensus        55 v~~ll~kh~~~e~ei~~~~~~v~~~~~~~~~~~~~---~~~~i~~~~~~l~~~~~~L~~~~~~R~~~Le-~l~~F~~~~~  130 (224)
T 2iak_A           55 VESHLENHKNVHRAIEEFESSLKEAKISEIQMTAP---LKLSYTDKLHRLESQYAKLLNTSRNQERHLD-TLHNFVTRAT  130 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGCCTT---HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            45556666666666666665555554332222211   112233444444444333322211 112222 4455555555


Q ss_pred             HHHHHHHHHHHH
Q 010679          148 ELIAKVHQLTQD  159 (504)
Q Consensus       148 eL~aqvq~L~~E  159 (504)
                      ++...+.+.+..
T Consensus       131 ~~~~Wi~eke~~  142 (224)
T 2iak_A          131 NELIWLNEKEES  142 (224)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555544443

>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}

Probab=95.32  E-value=0.47  Score=42.47  Aligned_cols=14  Identities=7%  Similarity=0.022  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHH
Q 010679           54 KIASQHVEMQKLAT   67 (504)
Q Consensus        54 eLe~~~eEIq~Le~   67 (504)
                      +|+.+...|-.|..
T Consensus         5 ~LTlLlG~l~~l~G   18 (158)
T 3tul_A            5 QLTLLLGKLMTLLG   18 (158)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh
Confidence            34455555544444

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=95.30  E-value=1.2  Score=48.64  Aligned_cols=18  Identities=11%  Similarity=0.235  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHhcccc
Q 010679          215 MATEVEKLRAELMNAPNV  232 (504)
Q Consensus       215 me~EiekLraELekle~~  232 (504)
                      .+.+.+.|+.||..|++.
T Consensus       565 ~~~~~~~~~~ei~~l~~~  582 (592)
T 1f5n_A          565 FQKESRIMKNEIQDLQTK  582 (592)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            578888899999888765

>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}

Probab=95.24  E-value=1.6  Score=40.73  Aligned_cols=8  Identities=13%  Similarity=0.223  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010679          215 MATEVEKL  222 (504)
Q Consensus       215 me~EiekL  222 (504)
                      +....+.|
T Consensus       203 l~~rW~~l  210 (218)
T 3fb2_A          203 VLDRWRRL  210 (218)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C

Probab=95.23  E-value=0.23  Score=51.92  Aligned_cols=44  Identities=5%  Similarity=0.015  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE  220 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~Eie  220 (504)
                      +..+..|+.+++..+......+..|++.+..++.+|+.+...|.
T Consensus        86 skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~  129 (409)
T 1m1j_C           86 SKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIA  129 (409)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34444444444443333333333333333333333333333333

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=95.14  E-value=0.5  Score=46.83  Aligned_cols=35  Identities=11%  Similarity=0.027  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       197 ~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      ....|.++.+.+++.|......|..|..+...+..
T Consensus       151 s~~~LLkkh~~le~~l~~~~~~i~~L~~~a~~l~~  185 (283)
T 3pe0_A          151 RLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQ  185 (283)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            44556666777778888888888888888777754

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}

Probab=95.13  E-value=2.5  Score=40.65  Aligned_cols=11  Identities=18%  Similarity=0.289  Sum_probs=4.5

Q ss_pred             HHHHHHHHHhc
Q 010679          219 VEKLRAELMNA  229 (504)
Q Consensus       219 iekLraELekl  229 (504)
                      ++.++..++.+
T Consensus       237 ~~~~~~~~~~i  247 (276)
T 2v0o_A          237 HEEFINNMANT  247 (276)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhC
Confidence            33444444443

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1

Probab=95.12  E-value=3.9  Score=42.96  Aligned_cols=25  Identities=8%  Similarity=0.069  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          135 SKTEAQNLVVAREELIAKVHQLTQD  159 (504)
Q Consensus       135 Lr~ELqeL~aerqeL~aqvq~L~~E  159 (504)
                      .+.++..+.+.++.+++++..+..+
T Consensus       361 ArNEItsaeSaInslqaqvSa~t~e  385 (602)
T 1cii_A          361 ARNKITSAESAVNSARNNLSARTNE  385 (602)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=95.11  E-value=0.36  Score=51.25  Aligned_cols=41  Identities=24%  Similarity=0.184  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 010679           81 QELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAE  121 (504)
Q Consensus        81 qELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaE  121 (504)
                      .+|+..+.||+++++.-++++++-+..+.+++++-..+++|
T Consensus         9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~ae   49 (497)
T 3iox_A            9 AKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAE   49 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            34444444444444444444444444444444444444443

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C

Probab=95.10  E-value=0.47  Score=49.61  Aligned_cols=48  Identities=6%  Similarity=0.017  Sum_probs=22.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (504)
Q Consensus        46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L   93 (504)
                      |.-=.|+.-|...+..|..-..+++.+..+++.+..++..+.+.|...
T Consensus        20 PT~C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~   67 (409)
T 1m1j_C           20 PTTCGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI   67 (409)
T ss_dssp             ECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555455555555555444443344444444444444444444444443

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=95.03  E-value=0.098  Score=42.38  Aligned_cols=60  Identities=17%  Similarity=0.240  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN  110 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~e  110 (504)
                      |+.+-+.+..+++.++.+|+.|+.++..|+++|+..+.+-.+++.++..+...++.+|.+
T Consensus         4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~e   63 (79)
T 3cvf_A            4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFE   63 (79)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            344555666778888888888888888888888888877777666665544444444433

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=95.03  E-value=0.14  Score=44.91  Aligned_cols=30  Identities=10%  Similarity=0.126  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlq  206 (504)
                      ++-++..++.++..++.+++.+..+.+++.
T Consensus        90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~  119 (133)
T 1fxk_C           90 MESIKSQKNELESTLQKMGENLRAITDIMM  119 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444443333333333333333

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}

Probab=95.03  E-value=1.4  Score=48.17  Aligned_cols=34  Identities=15%  Similarity=0.150  Sum_probs=24.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTL   79 (504)
Q Consensus        46 p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~L   79 (504)
                      .....|+++|+.++..++.++.+++.|++..+..
T Consensus        12 ~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F   45 (585)
T 1y1u_A           12 QKHLQINQRFEELRLITQDTENELKKLQQTQEYF   45 (585)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446778888888888888887777766655443

>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}

Probab=95.02  E-value=1.7  Score=38.16  Aligned_cols=51  Identities=8%  Similarity=-0.015  Sum_probs=34.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~   98 (504)
                      ...|+.-|+....+.+....++.+....+...+.+|..+..........+.
T Consensus         7 ~~~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~   57 (150)
T 3ajw_A            7 HGALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLN   57 (150)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777777777777777777777777777777666666555543

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=95.00  E-value=0.21  Score=40.35  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          115 IAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD  166 (504)
Q Consensus       115 i~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~e  166 (504)
                      ...|++||+.-+.+..||..++.....+..++++.+.+.+.|..+|.+++.+
T Consensus        16 QSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~   67 (81)
T 1wt6_A           16 QEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQER   67 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777777777777777777777766666666666665555544443

>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}

Probab=94.97  E-value=2.1  Score=39.11  Aligned_cols=12  Identities=25%  Similarity=0.504  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q 010679          111 LTEKIAKMEAEL  122 (504)
Q Consensus       111 L~eki~kLEaEL  122 (504)
                      ..+++..|..++
T Consensus        53 ~~~k~~qlre~~   64 (169)
T 3k29_A           53 YMQKIRQLREQL   64 (169)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333344444443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.93  E-value=0.31  Score=39.63  Aligned_cols=25  Identities=12%  Similarity=0.113  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           58 QHVEMQKLATENQRLAATHGTLRQE   82 (504)
Q Consensus        58 ~~eEIq~Le~e~qrLe~qi~~LkqE   82 (504)
                      +..+|+.+...+.-|..++++|+++
T Consensus        11 LE~KIq~avdtI~lLqmEieELKek   35 (81)
T 2jee_A           11 LEAKVQQAIDTITLLQMEIEELKEK   35 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=94.92  E-value=3.2  Score=40.88  Aligned_cols=14  Identities=0%  Similarity=-0.038  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHH
Q 010679           69 NQRLAATHGTLRQE   82 (504)
Q Consensus        69 ~qrLe~qi~~LkqE   82 (504)
                      +..+..++..++++
T Consensus        48 l~~f~keRa~iE~e   61 (312)
T 3abh_A           48 LMNCLHERARIEKA   61 (312)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444443

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=94.90  E-value=2.2  Score=39.27  Aligned_cols=23  Identities=13%  Similarity=0.235  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010679           53 QKIASQHVEMQKLATENQRLAAT   75 (504)
Q Consensus        53 qeLe~~~eEIq~Le~e~qrLe~q   75 (504)
                      ..++.+...|..+...+.+|...
T Consensus         9 ~~~~~i~~~i~~i~~~v~~L~~l   31 (196)
T 1fio_A            9 NKISQINRDLDKYDHTINQVDSL   31 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444333

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=94.88  E-value=2.8  Score=40.04  Aligned_cols=26  Identities=23%  Similarity=0.189  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           54 KIASQHVEMQKLATENQRLAATHGTL   79 (504)
Q Consensus        54 eLe~~~eEIq~Le~e~qrLe~qi~~L   79 (504)
                      +++.+..++..++....+|..+....
T Consensus        53 ~Fe~~~~~f~~~e~~~~~l~k~~k~y   78 (251)
T 2fic_A           53 QFEQCVQNFNKQLTEGTRLQKDLRTY   78 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444333

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=94.83  E-value=1.4  Score=49.57  Aligned_cols=12  Identities=0%  Similarity=-0.078  Sum_probs=5.0

Q ss_pred             hHHHHHHHHHHH
Q 010679           48 PEVMEQKIASQH   59 (504)
Q Consensus        48 ~~~LEqeLe~~~   59 (504)
                      +..|++....+.
T Consensus       337 ~~~i~~~w~~L~  348 (863)
T 1sjj_A          337 VSDINNAWGGLE  348 (863)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            344444444333

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=94.80  E-value=0.21  Score=39.77  Aligned_cols=55  Identities=16%  Similarity=0.280  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 010679           57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL  111 (504)
Q Consensus        57 ~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL  111 (504)
                      .+..+++.++.+|+.|+.++..|+++|+..+.+-.+++.++..+...++.+|.+|
T Consensus         4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL   58 (72)
T 3cve_A            4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL   58 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3556778888888888888888888888888777777666655444444444333

>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}

Probab=94.73  E-value=2  Score=39.26  Aligned_cols=20  Identities=15%  Similarity=0.255  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010679          142 LVVAREELIAKVHQLTQDLQ  161 (504)
Q Consensus       142 L~aerqeL~aqvq~L~~ELq  161 (504)
                      +...+.++..+++.+..+|.
T Consensus        92 ~~e~l~~a~~~l~d~~~~L~  111 (175)
T 4abx_A           92 LQNELRAALESVQAIAGELR  111 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444443

>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1

Probab=94.71  E-value=2.6  Score=38.81  Aligned_cols=34  Identities=12%  Similarity=0.169  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010679          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV  207 (504)
Q Consensus       174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqe  207 (504)
                      ...+..+..+.+.++.+|......+..+.+..+.
T Consensus       141 l~~v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~  174 (216)
T 1u5p_A          141 LTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKK  174 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3344455555555555555444444444443333

>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}

Probab=94.69  E-value=3.5  Score=40.31  Aligned_cols=8  Identities=0%  Similarity=0.028  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010679           54 KIASQHVE   61 (504)
Q Consensus        54 eLe~~~eE   61 (504)
                      +.+....+
T Consensus        47 ~~~~f~~e   54 (323)
T 3edv_A           47 RFREFARD   54 (323)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A

Probab=94.67  E-value=3.4  Score=39.94  Aligned_cols=28  Identities=4%  Similarity=-0.013  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKLATENQRLAATHGT   78 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~   78 (504)
                      ....|....+++..++..+.+|......
T Consensus        19 FR~~l~~~E~~~~~l~~~l~kl~k~~~~   46 (265)
T 2q12_A           19 TRSLLGVFEEDATAISNYMNQLYQAMHR   46 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444443333

>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A

Probab=94.65  E-value=1.6  Score=38.87  Aligned_cols=16  Identities=6%  Similarity=0.378  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          108 MRNLTEKIAKMEAELK  123 (504)
Q Consensus       108 L~eL~eki~kLEaEL~  123 (504)
                      +..+...|..+..+|.
T Consensus        56 l~~v~kdi~~a~~eL~   71 (141)
T 3okq_A           56 LETVSKDLENAQADVL   71 (141)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333344444444333

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=94.63  E-value=0.25  Score=52.40  Aligned_cols=13  Identities=8%  Similarity=0.235  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHHH
Q 010679          207 VMEKNYITMATEV  219 (504)
Q Consensus       207 emek~L~sme~Ei  219 (504)
                      ++++++..++.++
T Consensus        87 ~~~~~~~~~~~~~   99 (455)
T 2dq0_A           87 ELENEVEELKKKI   99 (455)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=94.63  E-value=0.31  Score=40.63  Aligned_cols=32  Identities=13%  Similarity=0.270  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (504)
Q Consensus       130 aELeqLr~ELqeL~aerqeL~aqvq~L~~ELq  161 (504)
                      .+|..++.+|..+..+...|..+++.|..++.
T Consensus        56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~   87 (93)
T 3s4r_A           56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIM   87 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444433333

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=94.60  E-value=0.47  Score=38.62  Aligned_cols=8  Identities=13%  Similarity=0.534  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010679          111 LTEKIAKM  118 (504)
Q Consensus       111 L~eki~kL  118 (504)
                      ++..|..+
T Consensus        31 ~q~~i~~l   38 (84)
T 1gk4_A           31 YQDTIGRL   38 (84)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=94.60  E-value=1.7  Score=41.38  Aligned_cols=16  Identities=13%  Similarity=0.158  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKLA   66 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le   66 (504)
                      +-++++.+...|..+.
T Consensus        45 f~~~ve~i~~~i~~i~   60 (279)
T 3c98_B           45 FFEQVEEIRGFIDKIA   60 (279)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334443333333333

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=94.50  E-value=2.1  Score=38.55  Aligned_cols=20  Identities=35%  Similarity=0.416  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010679          144 VAREELIAKVHQLTQDLQRA  163 (504)
Q Consensus       144 aerqeL~aqvq~L~~ELq~l  163 (504)
                      ....+...++..++.+|.+.
T Consensus        73 rKyeE~~RKl~~~E~dLera   92 (147)
T 2b9c_A           73 RKYEEVARKLVIIESDLERA   92 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444433

>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*

Probab=94.46  E-value=0.4  Score=46.50  Aligned_cols=10  Identities=0%  Similarity=-0.203  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q 010679           51 MEQKIASQHV   60 (504)
Q Consensus        51 LEqeLe~~~e   60 (504)
                      +...+...-.
T Consensus        11 v~~~~~~Y~~   20 (243)
T 2a01_A           11 VKDLATVYVD   20 (243)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1

Probab=94.45  E-value=4.6  Score=41.77  Aligned_cols=14  Identities=29%  Similarity=0.439  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHHH
Q 010679           77 GTLRQELAAAQHEL   90 (504)
Q Consensus        77 ~~LkqELa~lqqEL   90 (504)
                      ..++.+|......+
T Consensus       175 ~~~~~~l~~~~~~v  188 (476)
T 1hci_A          175 EAFESDLAAHQDRV  188 (476)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHH
Confidence            33333333333333

>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A

Probab=94.45  E-value=1.5  Score=40.78  Aligned_cols=16  Identities=6%  Similarity=0.046  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          209 EKNYITMATEVEKLRA  224 (504)
Q Consensus       209 ek~L~sme~EiekLra  224 (504)
                      ...++.+....+.|..
T Consensus       186 ~~~~~~l~~~W~~L~~  201 (218)
T 3edu_A          186 QNKEQEVSAAWQALLD  201 (218)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333344444444433

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=94.44  E-value=0.69  Score=38.09  Aligned_cols=31  Identities=16%  Similarity=0.136  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       130 aELeqLr~ELqeL~aerqeL~aqvq~L~~EL  160 (504)
                      .++..++..+.+....+.+|..+...|..+.
T Consensus        21 eel~~lke~l~k~e~~rkele~~~~~l~~ek   51 (89)
T 3bas_A           21 KQMDKMKEDLAKTERIKKELEEQNVTLLEQK   51 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444333

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=94.43  E-value=3.4  Score=38.99  Aligned_cols=31  Identities=6%  Similarity=0.118  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQE   82 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqE   82 (504)
                      +.+++.+..++..++....+|..++......
T Consensus        36 D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~~   66 (244)
T 1uru_A           36 DEIFDDHLNNFNRQQASANRLQKEFNNYIRC   66 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666666655555555555544433

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=94.39  E-value=0.77  Score=47.46  Aligned_cols=22  Identities=14%  Similarity=0.317  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010679          203 ESLQVMEKNYITMATEVEKLRA  224 (504)
Q Consensus       203 eqlqemek~L~sme~EiekLra  224 (504)
                      +...++++++.++.-++.+|+.
T Consensus       233 ~~~~~~~~~~~~lkp~l~ql~k  254 (373)
T 3hhm_B          233 AEYREIDKRMNSIKPDLIQLRK  254 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccChHHHHHHH
Confidence            3334444444444444444444

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}

Probab=94.30  E-value=3.9  Score=39.19  Aligned_cols=6  Identities=0%  Similarity=0.213  Sum_probs=2.3

Q ss_pred             HHHHHH
Q 010679          215 MATEVE  220 (504)
Q Consensus       215 me~Eie  220 (504)
                      +...++
T Consensus       240 ~~~~~~  245 (276)
T 2v0o_A          240 FINNMA  245 (276)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=94.24  E-value=0.98  Score=39.40  Aligned_cols=35  Identities=23%  Similarity=0.172  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          194 EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       194 ~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      ++++++.+.+.+..+++.+..+...+..+..+|.+
T Consensus        93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~  127 (133)
T 1fxk_C           93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE  127 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444433

>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C

Probab=94.22  E-value=0.76  Score=43.23  Aligned_cols=6  Identities=0%  Similarity=-0.052  Sum_probs=2.8

Q ss_pred             cccccc
Q 010679          232 VDRRAA  237 (504)
Q Consensus       232 ~~~~~~  237 (504)
                      .++|.-
T Consensus       181 ~~rw~e  186 (192)
T 2p22_C          181 LATWDK  186 (192)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            355543

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=94.21  E-value=0.46  Score=50.99  Aligned_cols=14  Identities=14%  Similarity=0.219  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHHH
Q 010679          147 EELIAKVHQLTQDL  160 (504)
Q Consensus       147 qeL~aqvq~L~~EL  160 (504)
                      ++|+++++.+.++|
T Consensus        87 ~~l~~~rn~~sk~i  100 (501)
T 1wle_A           87 RSLEEEKEAVTEAV  100 (501)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B

Probab=94.16  E-value=3.4  Score=38.00  Aligned_cols=51  Identities=10%  Similarity=0.075  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe  227 (504)
                      .+.|+..|..+....+.+...+........++++++.++.-+|..|+..-+
T Consensus        98 ~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD  148 (170)
T 3l4q_C           98 SERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRD  148 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            334444444444433333333444444444555555555555555544433

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1

Probab=94.16  E-value=1.7  Score=47.25  Aligned_cols=26  Identities=12%  Similarity=0.164  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAAT   75 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~q   75 (504)
                      .|+++++.++..++.++.+++.|++.
T Consensus         6 ~i~~~~~~l~~~~q~~e~~~k~Le~~   31 (575)
T 1bf5_A            6 ELDSKVRNVKDKVMCIEHEIKSLEDL   31 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666555555555544443

>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}

Probab=94.15  E-value=2.7  Score=44.52  Aligned_cols=18  Identities=17%  Similarity=0.307  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHhhHHHH
Q 010679          177 LESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~  194 (504)
                      |+..+..++.|+..++-+
T Consensus       191 i~~yr~k~~aL~~aIe~E  208 (526)
T 3iyk_A          191 VKEYRDKIDALKNAIEVE  208 (526)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444433

>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}

Probab=94.15  E-value=2.5  Score=37.07  Aligned_cols=39  Identities=15%  Similarity=0.214  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010679          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK  210 (504)
Q Consensus       172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek  210 (504)
                      .|...|...+.++..++.+++..+..+.+...+.+.+++
T Consensus        78 ~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~  116 (150)
T 3ajw_A           78 TLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQT  116 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555555555555444443

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C

Probab=94.13  E-value=0.61  Score=48.70  Aligned_cols=25  Identities=8%  Similarity=-0.073  Sum_probs=9.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679          180 LRQEYHHCRGTYEYEKKFYNDHLES  204 (504)
Q Consensus       180 LrqELq~LR~eLe~~kk~~~el~eq  204 (504)
                      +..|+.+++..|......+.+|+..
T Consensus        89 ml~~~~~~~~~~~~~~~~i~~l~~~  113 (411)
T 3ghg_C           89 MLEEIMKYEASILTHDSSIRYLQEI  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4444444444333333333333333

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=94.06  E-value=0.86  Score=48.37  Aligned_cols=48  Identities=15%  Similarity=0.119  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      +..+.+|...+.|+.++...++.+.+..+....++.+.+.+|..-.+.
T Consensus         5 a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNea   52 (497)
T 3iox_A            5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTA   52 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            455677888888888888888877777766655555544444443333

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}

Probab=94.06  E-value=6.3  Score=40.62  Aligned_cols=32  Identities=9%  Similarity=0.127  Sum_probs=20.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGT   78 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~   78 (504)
                      .+..++++++..+.-|..+...+..|....+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~  213 (386)
T 4akv_A          182 DLQDVEDRVDTFKAFSKKMDDSVLQLSTVASE  213 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777877777776666666555544333

>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}

Probab=94.05  E-value=0.77  Score=41.08  Aligned_cols=11  Identities=36%  Similarity=0.298  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHH
Q 010679           78 TLRQELAAAQH   88 (504)
Q Consensus        78 ~LkqELa~lqq   88 (504)
                      .|+.+|+..+.
T Consensus        24 qL~nrla~~~a   34 (158)
T 3tul_A           24 QLESRLAVWQA   34 (158)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33444443333

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1

Probab=94.04  E-value=3.5  Score=44.78  Aligned_cols=24  Identities=4%  Similarity=0.062  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           59 HVEMQKLATENQRLAATHGTLRQE   82 (504)
Q Consensus        59 ~eEIq~Le~e~qrLe~qi~~LkqE   82 (504)
                      ..+++.|....+.++.++..|++.
T Consensus         8 ~~~~~~l~~~~q~~e~~~k~Le~~   31 (575)
T 1bf5_A            8 DSKVRNVKDKVMCIEHEIKSLEDL   31 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555556655555443

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=94.00  E-value=0.24  Score=52.98  Aligned_cols=16  Identities=0%  Similarity=-0.041  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          205 LQVMEKNYITMATEVE  220 (504)
Q Consensus       205 lqemek~L~sme~Eie  220 (504)
                      ++++++++..++.++.
T Consensus        87 i~~le~~~~~~~~~~~  102 (485)
T 3qne_A           87 KKEIIEKEAEADKNLR  102 (485)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333344333

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C

Probab=93.93  E-value=0.94  Score=47.32  Aligned_cols=20  Identities=10%  Similarity=0.159  Sum_probs=10.6

Q ss_pred             CChHHHHHHHHHHHHHHHHH
Q 010679           46 PPPEVMEQKIASQHVEMQKL   65 (504)
Q Consensus        46 p~~~~LEqeLe~~~eEIq~L   65 (504)
                      |.-=.|..-|...+..|..-
T Consensus        20 PTtCgl~d~L~kye~~V~~~   39 (411)
T 3ghg_C           20 PTTCGIADFLSTYQTKVDKD   39 (411)
T ss_dssp             ECSHHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHhccchhhH
Confidence            55545555555555554443

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=93.92  E-value=0.23  Score=39.46  Aligned_cols=35  Identities=14%  Similarity=0.093  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010679          198 YNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV  232 (504)
Q Consensus       198 ~~el~eqlqemek~L~sme~EiekLraELekle~~  232 (504)
                      +....+.++++++.|...+.+|..|+.+|++++.+
T Consensus        35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV   69 (72)
T 3nmd_A           35 LRQRDALIDELELELDQKDELIQMLQNELDKYRSV   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            33444556677777788888888888888887653

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=93.89  E-value=5.7  Score=39.52  Aligned_cols=11  Identities=18%  Similarity=0.262  Sum_probs=4.8

Q ss_pred             HHHHHHHHHhc
Q 010679          219 VEKLRAELMNA  229 (504)
Q Consensus       219 iekLraELekl  229 (504)
                      ++.|+..|+.+
T Consensus       265 ~~~l~~~i~~i  275 (337)
T 2x3v_A          265 YRELEQAIRGA  275 (337)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHc
Confidence            34444444443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=93.87  E-value=0.68  Score=37.36  Aligned_cols=12  Identities=25%  Similarity=0.282  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q 010679          109 RNLTEKIAKMEA  120 (504)
Q Consensus       109 ~eL~eki~kLEa  120 (504)
                      ..|+.+|..++.
T Consensus        44 ~~L~kKiq~lE~   55 (81)
T 1ic2_A           44 VALQKKLKGTED   55 (81)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A

Probab=93.86  E-value=0.45  Score=44.65  Aligned_cols=25  Identities=8%  Similarity=0.023  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           52 EQKIASQHVEMQKLATENQRLAATH   76 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi   76 (504)
                      +.-......-+..+.....++..++
T Consensus        27 e~v~~~~~~y~~~l~~~a~~~~eqL   51 (191)
T 1nfn_A           27 ELALGRFWDYLRWVQTLSEQVQEEL   51 (191)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333444433

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=93.81  E-value=0.51  Score=38.15  Aligned_cols=55  Identities=16%  Similarity=0.213  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (504)
Q Consensus       172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraEL  226 (504)
                      .+.+||..|+-.+.+++++--...+++..-++.+..+.++|..-..||+.|+.+|
T Consensus        23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l   77 (81)
T 3qh9_A           23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3444455555555555444444444444445555666666666666666666665

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=93.81  E-value=0.43  Score=40.28  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (504)
Q Consensus       129 kaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~  162 (504)
                      ..++..++.+|.+|..++..|..+++.|+.+|.+
T Consensus        11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~   44 (100)
T 1go4_E           11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER   44 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467777777777777777777777777777654

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=93.76  E-value=0.82  Score=37.63  Aligned_cols=44  Identities=11%  Similarity=0.130  Sum_probs=20.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL   90 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL   90 (504)
                      .....+.++.....++..+.....+....+..|......+.++.
T Consensus         8 ~~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek   51 (89)
T 3bas_A            8 SIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQK   51 (89)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555444444444444433333333

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=93.75  E-value=6.3  Score=39.57  Aligned_cols=14  Identities=0%  Similarity=-0.038  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHH
Q 010679           69 NQRLAATHGTLRQE   82 (504)
Q Consensus        69 ~qrLe~qi~~LkqE   82 (504)
                      +..+..++..++++
T Consensus        48 l~~f~keRa~IE~e   61 (350)
T 3aco_A           48 LMNCLHERARIEKA   61 (350)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444444443

>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A

Probab=93.73  E-value=2.2  Score=37.02  Aligned_cols=11  Identities=18%  Similarity=0.271  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 010679           53 QKIASQHVEMQ   63 (504)
Q Consensus        53 qeLe~~~eEIq   63 (504)
                      .++..+..+++
T Consensus         9 ~~l~~Leae~q   19 (119)
T 3etw_A            9 GELQALDAEYQ   19 (119)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A

Probab=93.63  E-value=6.6  Score=43.61  Aligned_cols=28  Identities=11%  Similarity=0.153  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          201 HLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       201 l~eqlqemek~L~sme~EiekLraELek  228 (504)
                      +...+++-.+=...|..-+.+++.+++.
T Consensus       672 l~~~l~eG~~FY~~L~~~~~~~~~~~~d  699 (704)
T 2xs1_A          672 LVANLKEGTKFYNELTEILVRFQNKCSD  699 (704)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334455555555555543

>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*

Probab=93.61  E-value=0.64  Score=49.07  Aligned_cols=6  Identities=50%  Similarity=1.564  Sum_probs=2.4

Q ss_pred             CCCCCC
Q 010679          262 YEDGYG  267 (504)
Q Consensus       262 y~~~y~  267 (504)
                      |-.|||
T Consensus       269 Yk~GFG  274 (461)
T 3ghg_B          269 YKQGFG  274 (461)
T ss_dssp             HHHEEE
T ss_pred             HhhccC
Confidence            334444

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=93.51  E-value=5.1  Score=37.75  Aligned_cols=32  Identities=9%  Similarity=0.065  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLR   80 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~Lk   80 (504)
                      +.+++++..+...+..|..+...+...+..+.
T Consensus        40 e~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~   71 (244)
T 1uru_A           40 DDHLNNFNRQQASANRLQKEFNNYIRCVRAAQ   71 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777877778888777777666555543

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=93.48  E-value=0.56  Score=37.94  Aligned_cols=35  Identities=11%  Similarity=0.096  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       197 ~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      .+.....++++.+++...+..|+++|+.+++.|+.
T Consensus        39 ~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~   73 (81)
T 1wt6_A           39 DNQNFASQLREAEARNRDLEAHVRQLQERMELLQA   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34444455666666666666777777777776543

>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}

Probab=93.47  E-value=0.54  Score=47.32  Aligned_cols=12  Identities=8%  Similarity=0.254  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHh
Q 010679          217 TEVEKLRAELMN  228 (504)
Q Consensus       217 ~EiekLraELek  228 (504)
                      ..++.|+..|+-
T Consensus       264 ~~~eeLr~~l~P  275 (307)
T 2l7b_A          264 AAQARLKSRFEP  275 (307)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             hHHHHHHHHhhh
Confidence            334444444443

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=93.44  E-value=6.4  Score=38.72  Aligned_cols=25  Identities=16%  Similarity=0.243  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679           72 LAATHGTLRQELAAAQHELQILHGQ   96 (504)
Q Consensus        72 Le~qi~~LkqELa~lqqEL~~L~~~   96 (504)
                      +...++.++.||...+..+..+...
T Consensus        46 ~~~kh~~le~El~a~e~~v~~v~~~   70 (283)
T 3pe0_A           46 KKESYSALMRELELKEKKIKELQNA   70 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3344555555555555555544443

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=93.36  E-value=0.25  Score=36.77  Aligned_cols=42  Identities=29%  Similarity=0.372  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L   93 (504)
                      ++++..+..++..|..+|.+|.+.+.+.+++|..++.+|++|
T Consensus         8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L   49 (51)
T 3m91_A            8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   49 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            778888888889999999999999999998888888888776

>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1

Probab=93.36  E-value=5.7  Score=37.87  Aligned_cols=9  Identities=11%  Similarity=0.294  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 010679          219 VEKLRAELM  227 (504)
Q Consensus       219 iekLraELe  227 (504)
                      .++|+..+.
T Consensus       212 a~~L~~~v~  220 (227)
T 1qu7_A          212 ASRLTEAVA  220 (227)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1

Probab=93.34  E-value=1.1  Score=39.23  Aligned_cols=22  Identities=9%  Similarity=0.244  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcc
Q 010679           78 TLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        78 ~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      .|..+++.++.++..+...+..
T Consensus        10 ~l~~KvAElekkv~~lek~lk~   31 (125)
T 2pms_C           10 APQAKIAELENQVHRLEQELKE   31 (125)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Confidence            3444455555555555555444

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=93.30  E-value=2.9  Score=40.98  Aligned_cols=29  Identities=10%  Similarity=0.189  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHG   77 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~   77 (504)
                      ..+=.+++.+...|..+...+.+|...+.
T Consensus        31 ~~F~~~v~~I~~~I~~I~~~v~~l~~l~~   59 (267)
T 1dn1_B           31 DEFFEQVEEIRGFIDKIAENVEEVKRKHS   59 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555554444443

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=93.30  E-value=1.7  Score=42.38  Aligned_cols=17  Identities=18%  Similarity=0.262  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679           62 MQKLATENQRLAATHGT   78 (504)
Q Consensus        62 Iq~Le~e~qrLe~qi~~   78 (504)
                      |..+..++..++.+...
T Consensus        27 l~~f~keRa~iE~~Yak   43 (290)
T 3i2w_A           27 LQQLIQERADIEKGYAK   43 (290)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444433

>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}

Probab=93.29  E-value=0.7  Score=43.97  Aligned_cols=12  Identities=8%  Similarity=0.318  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHH
Q 010679          128 VKLEFQKSKTEA  139 (504)
Q Consensus       128 LkaELeqLr~EL  139 (504)
                      +..+++.++..+
T Consensus        85 l~kd~ee~r~~l   96 (216)
T 2lem_A           85 MNKDLEEVKQKV   96 (216)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HhccHHHHHHhh
Confidence            444455555443

>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1

Probab=93.29  E-value=0.29  Score=42.89  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010679          104 RELQMRNLTEKIAKMEAELKTA  125 (504)
Q Consensus       104 ~E~eL~eL~eki~kLEaEL~el  125 (504)
                      ++..+.+|..++..++.++..+
T Consensus        11 l~~KvAElekkv~~lek~lk~~   32 (125)
T 2pms_C           11 PQAKIAELENQVHRLEQELKEI   32 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            4556666777777776666544

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=93.23  E-value=0.4  Score=40.52  Aligned_cols=19  Identities=26%  Similarity=0.335  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHhc
Q 010679          211 NYITMATEVEKLRAELMNA  229 (504)
Q Consensus       211 ~L~sme~EiekLraELekl  229 (504)
                      .++.+..|+++|+..|.++
T Consensus        76 ~~e~Lq~E~erLr~~v~~l   94 (100)
T 1go4_E           76 DHSQLQAECERLRGLLRAM   94 (100)
T ss_dssp             HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444

>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1

Probab=93.19  E-value=5.9  Score=37.57  Aligned_cols=17  Identities=12%  Similarity=0.302  Sum_probs=7.1

Q ss_pred             hHHHHHHHHHHHHHHHH
Q 010679          171 PALLSELESLRQEYHHC  187 (504)
Q Consensus       171 ~~L~~EIeaLrqELq~L  187 (504)
                      ..+..+.+.++.++..+
T Consensus       165 ~~ll~~h~~~~~~l~~~  181 (250)
T 1quu_A          165 QSLITAHEQFKATLPEA  181 (250)
T ss_dssp             HHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444333333

>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*

Probab=93.15  E-value=1.1  Score=47.35  Aligned_cols=25  Identities=16%  Similarity=0.392  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          204 SLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       204 qlqemek~L~sme~EiekLraELek  228 (504)
                      .|+.|...++.+.+.|++|+..|..
T Consensus       164 ~i~~l~~~~~~~~~~i~~l~~~~~~  188 (461)
T 3ghg_B          164 NLRVLRSILENLRSKIQKLESDVSA  188 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333444444444444444444443

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=93.05  E-value=5.1  Score=44.45  Aligned_cols=14  Identities=21%  Similarity=0.359  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHhc
Q 010679          216 ATEVEKLRAELMNA  229 (504)
Q Consensus       216 e~EiekLraELekl  229 (504)
                      ..++++++++|..+
T Consensus       675 ~~~~~~~~~~~~~~  688 (695)
T 2j69_A          675 IAQLQKIEAAYSNL  688 (695)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444443

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A

Probab=93.04  E-value=1.5  Score=47.80  Aligned_cols=27  Identities=15%  Similarity=0.266  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAAT   75 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~q   75 (504)
                      ..|+++++.++.+++.++.+++.|++.
T Consensus        16 ~ei~~~v~~lr~~~q~~e~~ik~Le~~   42 (596)
T 1bg1_A           16 QMLEQHLQDVRKRVQDLEQKMKVVENL   42 (596)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555554444443

>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1

Probab=92.95  E-value=6.4  Score=37.32  Aligned_cols=15  Identities=33%  Similarity=0.505  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679           75 THGTLRQELAAAQHE   89 (504)
Q Consensus        75 qi~~LkqELa~lqqE   89 (504)
                      .|..++.+|...+.+
T Consensus        56 kh~~~~~el~~~~~~   70 (250)
T 1quu_A           56 KHEAFESDLAAHQDR   70 (250)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=92.93  E-value=2.3  Score=34.48  Aligned_cols=48  Identities=15%  Similarity=0.233  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe  227 (504)
                      .+..|..+..++.+++.+++.....+.+       +-+-...++.||..-++-|+
T Consensus        31 ~q~~i~~lE~eL~~~r~e~~~q~~EYq~-------LlnvK~~Ld~EIatYRkLLE   78 (84)
T 1gk4_A           31 YQDTIGRLQDEIQNMKEEMARHLREYQD-------LLNVKMALDIEIATYRKLLE   78 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHc
Confidence            3444555555555555554433333333       23333334455555554443

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=92.93  E-value=0.22  Score=50.19  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Q 010679          207 VMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       207 emek~L~sme~EiekLraELekl  229 (504)
                      .++.++..++.+++.++.+++.+
T Consensus       133 ~~~~~l~~~~~~l~~a~~~l~~~  155 (369)
T 4dk0_A          133 VVQENIKQAEIEVNTAETNLGYT  155 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC
Confidence            33444445555555555555543

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*

Probab=92.88  E-value=9.2  Score=38.94  Aligned_cols=31  Identities=13%  Similarity=0.005  Sum_probs=18.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATHGT   78 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~   78 (504)
                      +..++++++..+.-|..|+..+..|......
T Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~  193 (366)
T 3dyt_A          163 LVEIEQKCEAVGKFTKAMDDGVKELLTVGQE  193 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777776666666666655555444433

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}

Probab=92.84  E-value=2.5  Score=46.84  Aligned_cols=22  Identities=5%  Similarity=0.066  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010679           58 QHVEMQKLATENQRLAATHGTL   79 (504)
Q Consensus        58 ~~eEIq~Le~e~qrLe~qi~~L   79 (504)
                      +...++.|....+.++.++..|
T Consensus       142 i~~~v~~lr~~~q~~e~~ik~L  163 (683)
T 1yvl_A          142 LDSKVRNVKDKVMCIEHEIKSL  163 (683)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444433

>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}

Probab=92.80  E-value=11  Score=39.47  Aligned_cols=9  Identities=33%  Similarity=0.427  Sum_probs=3.6

Q ss_pred             HHHHHHHHH
Q 010679           75 THGTLRQEL   83 (504)
Q Consensus        75 qi~~LkqEL   83 (504)
                      .+..|+.++
T Consensus       169 ~L~~L~~~~  177 (413)
T 4hpq_C          169 RMKGLRDEF  177 (413)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            334444333

>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}

Probab=92.76  E-value=6.2  Score=36.67  Aligned_cols=33  Identities=9%  Similarity=0.146  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010679          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM  208 (504)
Q Consensus       176 EIeaLrqELq~LR~eLe~~kk~~~el~eqlqem  208 (504)
                      ++..++...+.+..+|+.....+..+....+.|
T Consensus       139 ~v~~l~~k~~~f~~el~~~~~~v~~l~~~~~~L  171 (210)
T 3pdy_A          139 NMTAKKESYSALMRELELKEKKIKELQNAGDRL  171 (210)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            456666666666666665555555555544443

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}

Probab=92.59  E-value=0.17  Score=53.20  Aligned_cols=13  Identities=15%  Similarity=0.368  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q 010679          208 MEKNYITMATEVE  220 (504)
Q Consensus       208 mek~L~sme~Eie  220 (504)
                      +++++..++.++.
T Consensus        87 ~~~~~~~~~~~~~   99 (425)
T 2dq3_A           87 LEEELRKVEEELK   99 (425)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1

Probab=92.58  E-value=7.4  Score=37.09  Aligned_cols=12  Identities=17%  Similarity=0.302  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHh
Q 010679          217 TEVEKLRAELMN  228 (504)
Q Consensus       217 ~EiekLraELek  228 (504)
                      .+|..+-.+|..
T Consensus       206 ~~L~~~a~~L~~  217 (227)
T 1qu7_A          206 AALEEQASRLTE  217 (227)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            344444444443

>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}

Probab=92.47  E-value=3.4  Score=34.05  Aligned_cols=16  Identities=13%  Similarity=0.196  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          107 QMRNLTEKIAKMEAEL  122 (504)
Q Consensus       107 eL~eL~eki~kLEaEL  122 (504)
                      .+.+|..=|...+..+
T Consensus        10 ~l~el~~WL~~~e~~l   25 (119)
T 3uun_A           10 ALEEVLSWLLSAEDTL   25 (119)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444344444333

>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A

Probab=92.41  E-value=2.3  Score=38.00  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (504)
Q Consensus       129 kaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~  162 (504)
                      +++...--.|...|.+++..+..++.+|..+|..
T Consensus        51 K~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~   84 (140)
T 1xaw_A           51 KRNFDTGLQEYKSLQSVLDEINKELSRLDKELDD   84 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333334444444444444444444444444

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=92.36  E-value=0.39  Score=44.85  Aligned_cols=50  Identities=24%  Similarity=0.313  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~   98 (504)
                      ..++++|+..+..|+.|..++..|..+++...++++.++++|+.++.++.
T Consensus         9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~   58 (190)
T 4emc_A            9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK   58 (190)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            46788888888888888888888888888777777777777777766653

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=92.28  E-value=0.87  Score=37.24  Aligned_cols=15  Identities=20%  Similarity=0.244  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHhhH
Q 010679          177 LESLRQEYHHCRGTY  191 (504)
Q Consensus       177 IeaLrqELq~LR~eL  191 (504)
                      |..+..++.+++.++
T Consensus        37 i~~lE~el~~~r~e~   51 (86)
T 1x8y_A           37 LAEKEREMAEMRARM   51 (86)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444444443

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=92.17  E-value=0.99  Score=36.37  Aligned_cols=54  Identities=15%  Similarity=0.121  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      +...+.||+.|+..-+.+++-...+.+-+..++.+...+.++|+.|+...+.|+
T Consensus        20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~   73 (78)
T 3iv1_A           20 MDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS   73 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444455555555555555555555555443

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A

Probab=92.16  E-value=2.7  Score=45.89  Aligned_cols=31  Identities=13%  Similarity=0.094  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQE   82 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqE   82 (504)
                      +++...+..+++.|....+.++.++..|++.
T Consensus        12 ~~k~~ei~~~v~~lr~~~q~~e~~ik~Le~~   42 (596)
T 1bg1_A           12 TEKQQMLEQHLQDVRKRVQDLEQKMKVVENL   42 (596)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666777777777777766666443

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=92.10  E-value=1.7  Score=46.69  Aligned_cols=20  Identities=5%  Similarity=-0.102  Sum_probs=12.8

Q ss_pred             CCCChHHHHHHHHHHHHHHH
Q 010679           44 MMPPPEVMEQKIASQHVEMQ   63 (504)
Q Consensus        44 ~~p~~~~LEqeLe~~~eEIq   63 (504)
                      +|..+..+.+..+...+.++
T Consensus        39 pmlD~~~ir~n~~~v~~~l~   58 (501)
T 1wle_A           39 PLLDMESLCAYPEDAARALD   58 (501)
T ss_dssp             CCCCHHHHHHSHHHHHHHHH
T ss_pred             CccCHHHHHhCHHHHHHHHH
Confidence            56677777776666555443

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=92.07  E-value=3.9  Score=39.85  Aligned_cols=7  Identities=14%  Similarity=0.254  Sum_probs=2.8

Q ss_pred             HHHHHHh
Q 010679          222 LRAELMN  228 (504)
Q Consensus       222 LraELek  228 (504)
                      ++..|++
T Consensus       255 ~~~~i~~  261 (290)
T 3i2w_A          255 FSHTINN  261 (290)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            3444443

>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A

Probab=92.06  E-value=0.7  Score=42.86  Aligned_cols=16  Identities=6%  Similarity=-0.039  Sum_probs=6.8

Q ss_pred             ChHHHHHHHHHHHHHH
Q 010679           47 PPEVMEQKIASQHVEM   62 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEI   62 (504)
                      +.+.+...+-..-..+
T Consensus         8 ~~e~v~~~~w~Y~~~l   23 (185)
T 3r2p_A            8 PWDRVKDLATVYVDVL   23 (185)
T ss_dssp             TTHHHHHHHHHHTHHH
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            3344444444444433

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}

Probab=92.05  E-value=7.2  Score=43.22  Aligned_cols=15  Identities=13%  Similarity=-0.044  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679          211 NYITMATEVEKLRAE  225 (504)
Q Consensus       211 ~L~sme~EiekLraE  225 (504)
                      .+..+...+..|-..
T Consensus       297 ~~~~l~~~~~~ll~~  311 (683)
T 1yvl_A          297 NKQVLWDRTFSLFQQ  311 (683)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH
Confidence            344444444444443

>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}

Probab=92.03  E-value=9.6  Score=37.18  Aligned_cols=44  Identities=16%  Similarity=0.167  Sum_probs=26.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010679          186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (504)
Q Consensus       186 ~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekl  229 (504)
                      .+|..+-.++..+--+...+...-+.--.|..|+..++..|+.+
T Consensus       190 ~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~~~l~~~l~~~  233 (253)
T 2d1l_A          190 AVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISEDL  233 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34455555666666666666655555455556777777766554

>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}

Probab=92.00  E-value=3.5  Score=45.91  Aligned_cols=24  Identities=17%  Similarity=0.310  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           57 SQHVEMQKLATENQRLAATHGTLR   80 (504)
Q Consensus        57 ~~~eEIq~Le~e~qrLe~qi~~Lk   80 (504)
                      .+..+|+.++.++..|+.+++..+
T Consensus        14 ~i~~~i~~~~~~r~~l~~~~~~~~   37 (706)
T 3fhn_A           14 NINDRIKQVQNERNELASKLQNLK   37 (706)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444555555554444

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=91.97  E-value=0.16  Score=50.88  Aligned_cols=14  Identities=21%  Similarity=0.328  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHhcc
Q 010679          217 TEVEKLRAELMNAP  230 (504)
Q Consensus       217 ~EiekLraELekle  230 (504)
                      .+++.++++|+.++
T Consensus       135 a~l~~a~a~l~~a~  148 (341)
T 3fpp_A          135 AQIKRNQASLDTAK  148 (341)
T ss_dssp             HHHHHTHHHHTTTT
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444433

>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}

Probab=91.95  E-value=9  Score=36.66  Aligned_cols=19  Identities=11%  Similarity=0.265  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHhhHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEK  195 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~k  195 (504)
                      |..++.|++.++.+++.++
T Consensus       162 l~kae~el~~a~~~ye~lN  180 (237)
T 4avm_A          162 TAKAEEEFNKAQTVFEDLN  180 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444443

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=91.94  E-value=0.2  Score=50.65  Aligned_cols=28  Identities=11%  Similarity=0.163  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          204 SLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       204 qlqemek~L~sme~EiekLraELekle~  231 (504)
                      ++...+.++..++.+++.++.+|+.++.
T Consensus       123 ~~~~a~a~~~~~~~~l~~~~~~l~~a~~  150 (369)
T 4dk0_A          123 TLNNAKAEMDVVQENIKQAEIEVNTAET  150 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556677777777777777776654

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=91.90  E-value=1.1  Score=41.50  Aligned_cols=9  Identities=11%  Similarity=0.065  Sum_probs=4.3

Q ss_pred             HHHHHHHHh
Q 010679          220 EKLRAELMN  228 (504)
Q Consensus       220 ekLraELek  228 (504)
                      .+++.++.+
T Consensus       134 ~k~~~em~K  142 (175)
T 3lay_A          134 VKRDVAMAQ  142 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            344445554

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=91.88  E-value=0.28  Score=49.01  Aligned_cols=26  Identities=4%  Similarity=0.125  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          205 LQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       205 lqemek~L~sme~EiekLraELekle  230 (504)
                      ++.++.++..++.+++.++.+|+.+.
T Consensus       130 l~~~~a~l~~a~a~l~~a~~~l~~~~  155 (341)
T 3fpp_A          130 IGTIDAQIKRNQASLDTAKTNLDYTR  155 (341)
T ss_dssp             HHHHHHHHHHTHHHHTTTTTTTTSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCE
Confidence            33444455555666666666666644

>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}

Probab=91.72  E-value=11  Score=39.97  Aligned_cols=10  Identities=10%  Similarity=0.179  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q 010679           50 VMEQKIASQH   59 (504)
Q Consensus        50 ~LEqeLe~~~   59 (504)
                      .+..+|..++
T Consensus        94 ~~~~Kl~eLE  103 (526)
T 3iyk_A           94 GIQAKLKELE  103 (526)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=91.72  E-value=0.38  Score=51.41  Aligned_cols=24  Identities=4%  Similarity=0.029  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          204 SLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       204 qlqemek~L~sme~EiekLraELe  227 (504)
                      +++++.+++..++.++.+++++|.
T Consensus        79 ~~~~l~~~i~~le~~~~~~~~~~~  102 (485)
T 3qne_A           79 EKEKLSNEKKEIIEKEAEADKNLR  102 (485)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444443

>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}

Probab=91.72  E-value=0.067  Score=44.57  Aligned_cols=59  Identities=22%  Similarity=0.241  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (504)
Q Consensus       103 e~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq  161 (504)
                      .++.+|.+|.+.+.+++.++..+.-|++.++-.+.+...-++.|..+..+++.|..+|.
T Consensus        35 ~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~L~~ql~   93 (96)
T 3fx0_A           35 AKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLE   93 (96)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            36677888888888888887777777777777777777666666666665555555444

>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}

Probab=91.64  E-value=6.8  Score=34.66  Aligned_cols=10  Identities=30%  Similarity=0.195  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q 010679          151 AKVHQLTQDL  160 (504)
Q Consensus       151 aqvq~L~~EL  160 (504)
                      ..+-.|..++
T Consensus        75 RdIgsL~ddV   84 (157)
T 2qih_A           75 RAVGNNTQGV   84 (157)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhhcchhhHH
Confidence            3333333333

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=91.57  E-value=0.51  Score=39.89  Aligned_cols=29  Identities=21%  Similarity=0.286  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           63 QKLATENQRLAATHGTLRQELAAAQHELQ   91 (504)
Q Consensus        63 q~Le~e~qrLe~qi~~LkqELa~lqqEL~   91 (504)
                      ..|.++...|.-+++-|+..|+...+.+.
T Consensus        19 AQLDNEKsal~YqVdlLKD~LEe~eE~~a   47 (103)
T 4h22_A           19 AQLDNEKTNFMYQVDTLKDMLLELEEQLA   47 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444333333

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=91.52  E-value=1.1  Score=39.55  Aligned_cols=16  Identities=6%  Similarity=0.048  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKLA   66 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le   66 (504)
                      +.+++......++.+.
T Consensus        32 Vk~EVq~sl~~l~~l~   47 (130)
T 4dnd_A           32 VRGEVQKAVNTARGLY   47 (130)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444333

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=91.48  E-value=1.7  Score=34.48  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010679          139 AQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       139 LqeL~aerqeL~aqvq~L~~EL  160 (504)
                      ++++..+-++|+.+|+.|+.+|
T Consensus         9 Lq~~E~~N~~Le~~v~~le~~L   30 (72)
T 3cve_A            9 LQEVEIRNKDLEGQLSEMEQRL   30 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH
Confidence            3333333344444444444433

>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}

Probab=91.44  E-value=12  Score=37.06  Aligned_cols=20  Identities=25%  Similarity=0.262  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcc
Q 010679           80 RQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        80 kqELa~lqqEL~~L~~~L~~   99 (504)
                      .+.|..+..++++.++++++
T Consensus       100 ~~~L~~~~~e~ek~RK~~Ke  119 (279)
T 3qwe_A          100 YQPLAAKRTEIEKWRKEFKE  119 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555544

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=91.44  E-value=1.2  Score=36.40  Aligned_cols=24  Identities=4%  Similarity=-0.006  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYND  200 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~e  200 (504)
                      +..+..++..++.+|+.+.....+
T Consensus        58 ~~~l~~~l~~~e~eLe~~~erWee   81 (89)
T 2lw1_A           58 TQKVLADMAAAEQELEQAFERWEY   81 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444433333433

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1

Probab=91.41  E-value=16  Score=38.48  Aligned_cols=37  Identities=11%  Similarity=0.102  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010679          131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV  167 (504)
Q Consensus       131 ELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~el  167 (504)
                      |.+.+++.+.+.++++..++..++.+...+.....+.
T Consensus       350 e~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~  386 (602)
T 1cii_A          350 EWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQ  386 (602)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555444443

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=91.35  E-value=14  Score=37.75  Aligned_cols=37  Identities=5%  Similarity=-0.015  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAA   86 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~l   86 (504)
                      .....|...+++|..++..+.+|......+...+..+
T Consensus        41 ~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~   77 (407)
T 4h8s_A           41 QTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEM   77 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555544444433333

>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1

Probab=91.14  E-value=4.8  Score=37.98  Aligned_cols=31  Identities=19%  Similarity=0.432  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010679          109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEA  139 (504)
Q Consensus       109 ~eL~eki~kLEaEL~ele~LkaELeqLr~EL  139 (504)
                      ..+.++...|+.|...++..+.++..+...+
T Consensus        73 ~nv~eRek~l~kEk~si~~s~kef~~~k~~i  103 (199)
T 2ap3_A           73 KNADDRLKEFEKEEDAIKKSEQDFKKAKSHV  103 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444443333

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}

Probab=91.11  E-value=15  Score=37.76  Aligned_cols=18  Identities=17%  Similarity=0.058  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHhhHH
Q 010679          175 SELESLRQEYHHCRGTYE  192 (504)
Q Consensus       175 ~EIeaLrqELq~LR~eLe  192 (504)
                      ..|..++.+|.+++.++.
T Consensus       309 ~~L~~~~~~l~~~~~~~~  326 (406)
T 4dyl_A          309 HTLTSVTDELAVATEMVF  326 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444433

>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A

Probab=91.04  E-value=2.8  Score=34.62  Aligned_cols=21  Identities=5%  Similarity=0.178  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010679          104 RELQMRNLTEKIAKMEAELKT  124 (504)
Q Consensus       104 ~E~eL~eL~eki~kLEaEL~e  124 (504)
                      .+..+.+|..=|.+.+..+..
T Consensus         7 f~~~l~el~~WL~e~e~~l~~   27 (118)
T 3uul_A            7 YQIALEEVLTWLLSAEDTFQE   27 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            344444444444444444443

>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*

Probab=90.89  E-value=4.8  Score=41.38  Aligned_cols=12  Identities=25%  Similarity=0.490  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q 010679          176 ELESLRQEYHHC  187 (504)
Q Consensus       176 EIeaLrqELq~L  187 (504)
                      ++..++.+++.+
T Consensus       102 e~~~l~~~l~~l  113 (365)
T 1gqe_A          102 ELDALEEKLAQL  113 (365)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            334444444333

>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1

Probab=90.89  E-value=0.81  Score=38.33  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010679          110 NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVV  144 (504)
Q Consensus       110 eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~a  144 (504)
                      +|+++|.+|+.++..++.+..++..|+.+..-|..
T Consensus        51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~   85 (96)
T 1t3j_A           51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLES   85 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34444444444444444444444444444333333

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=90.81  E-value=1.3  Score=35.31  Aligned_cols=10  Identities=20%  Similarity=0.086  Sum_probs=2.2

Q ss_pred             HHHHHHHHHH
Q 010679          200 DHLESLQVME  209 (504)
Q Consensus       200 el~eqlqeme  209 (504)
                      .+..++.+++
T Consensus        62 r~~~ri~elE   71 (77)
T 2w83_C           62 KLEEKNRELE   71 (77)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=90.78  E-value=4.5  Score=38.48  Aligned_cols=47  Identities=15%  Similarity=0.186  Sum_probs=24.0

Q ss_pred             CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           46 PPPEV-MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI   92 (504)
Q Consensus        46 p~~~~-LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~   92 (504)
                      +.+.. +.+-++-+...+..+..++.+|..+.+.|+.++..+..++++
T Consensus       117 ~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~  164 (213)
T 1ik9_A          117 ENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEK  164 (213)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34433 345556666655555555555555555555444444443333

>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1

Probab=90.71  E-value=17  Score=37.48  Aligned_cols=14  Identities=7%  Similarity=-0.030  Sum_probs=6.1

Q ss_pred             CCChHHHHHHHHHH
Q 010679           45 MPPPEVMEQKIASQ   58 (504)
Q Consensus        45 ~p~~~~LEqeLe~~   58 (504)
                      +..+...-+.|..+
T Consensus        98 ~~~i~~~w~~L~~l  111 (476)
T 1hci_A           98 VSDIAGAWQRLEQA  111 (476)
T ss_dssp             SSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444444443

>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}

Probab=90.62  E-value=1.7  Score=36.95  Aligned_cols=49  Identities=18%  Similarity=0.186  Sum_probs=27.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 010679          125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL  173 (504)
Q Consensus       125 le~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L  173 (504)
                      +..+.+|+.+.+.++.++..++.+|+..++.|+.+-.-.-.++..|+.+
T Consensus         6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiL   54 (106)
T 4e61_A            6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEIL   54 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666666666666666666666665555444444334333

>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}

Probab=90.61  E-value=14  Score=38.16  Aligned_cols=14  Identities=43%  Similarity=0.582  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHH
Q 010679          148 ELIAKVHQLTQDLQ  161 (504)
Q Consensus       148 eL~aqvq~L~~ELq  161 (504)
                      ++..+|+.|.+.+.
T Consensus       479 kV~aKIDNLNQaaS  492 (569)
T 4dvz_A          479 EWISKVENLNAALN  492 (569)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHH
Confidence            34444444444443

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*

Probab=90.54  E-value=1.2  Score=47.50  Aligned_cols=12  Identities=8%  Similarity=0.138  Sum_probs=6.1

Q ss_pred             CCCCChHHHHHH
Q 010679           43 DMMPPPEVMEQK   54 (504)
Q Consensus        43 ~~~p~~~~LEqe   54 (504)
                      -||..+..+.+.
T Consensus         5 ~mmldi~~~r~~   16 (484)
T 3lss_A            5 MMVLDIQLFRDE   16 (484)
T ss_dssp             CCCCCGGGGGSH
T ss_pred             cccccHHHHHcC
Confidence            345566555444

>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=90.49  E-value=2.5  Score=35.45  Aligned_cols=52  Identities=12%  Similarity=0.158  Sum_probs=24.3

Q ss_pred             HHHHHH-HHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          173 LLSELE-SLRQEYHHCRGTYEYEKK--FYNDHLESLQVMEKNYITMATEVEKLRA  224 (504)
Q Consensus       173 L~~EIe-aLrqELq~LR~eLe~~kk--~~~el~eqlqemek~L~sme~EiekLra  224 (504)
                      |+..|+ .|...+..+..+++.+..  ..+.+..++.++..+++.+.+...+.+.
T Consensus        38 LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ek~~   92 (97)
T 1hs7_A           38 LRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYNQRKS   92 (97)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444 444444444444442222  3445555555555555555555544443

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=90.34  E-value=1  Score=36.29  Aligned_cols=53  Identities=11%  Similarity=0.116  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      ....++++|+.+..+|...+..++.|...+....++|+.++.++..|..++..
T Consensus         8 ~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~   60 (78)
T 3efg_A            8 RDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK   60 (78)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44678888888888888888888888888888888888888888877777655

>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1

Probab=90.32  E-value=0.73  Score=38.59  Aligned_cols=40  Identities=15%  Similarity=0.257  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010679          103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNL  142 (504)
Q Consensus       103 e~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL  142 (504)
                      +++.+|+.|..+|..||.-....+.|+.+..-|..+|...
T Consensus        51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F   90 (96)
T 1t3j_A           51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF   90 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555554443

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=90.23  E-value=2.8  Score=33.85  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=13.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQL  156 (504)
Q Consensus       126 e~LkaELeqLr~ELqeL~aerqeL~aqvq~L  156 (504)
                      +.+..||..|+-.+.++.+++.+.+.++..-
T Consensus        22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsT   52 (81)
T 3qh9_A           22 EELLQELRHLKIKVEELENERNQYEWKLKAT   52 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3444444444444444444444444443333

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=90.11  E-value=2.3  Score=33.91  Aligned_cols=21  Identities=33%  Similarity=0.414  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010679           59 HVEMQKLATENQRLAATHGTL   79 (504)
Q Consensus        59 ~eEIq~Le~e~qrLe~qi~~L   79 (504)
                      -.++++|..++.+|.....+|
T Consensus         8 gkevEnLi~EN~eLl~TKNaL   28 (77)
T 2w83_C            8 GREVENLILENTQLLETKNAL   28 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666665555444

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=89.87  E-value=0.88  Score=40.77  Aligned_cols=28  Identities=4%  Similarity=0.022  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLES  204 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eq  204 (504)
                      ++-+...++.++..++.+.+.+..+.++
T Consensus       100 ~~~l~~ri~~l~~~l~~l~~~l~~l~~~  127 (151)
T 2zdi_C          100 ISFLEKRLKEYDEAIKKTQGALAELEKR  127 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444433333333333333

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=89.84  E-value=1.9  Score=38.53  Aligned_cols=31  Identities=3%  Similarity=0.073  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          197 FYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       197 ~~~el~eqlqemek~L~sme~EiekLraELe  227 (504)
                      +++.+.+.+..+++.+..+...+..++..|.
T Consensus       106 ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~  136 (151)
T 2zdi_C          106 RLKEYDEAIKKTQGALAELEKRIGEVARKAQ  136 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444443333333

>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}

Probab=89.83  E-value=17  Score=36.03  Aligned_cols=17  Identities=12%  Similarity=0.274  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679          107 QMRNLTEKIAKMEAELK  123 (504)
Q Consensus       107 eL~eL~eki~kLEaEL~  123 (504)
                      .++..+.+...+.+|+.
T Consensus       134 ~l~KAK~~Y~~r~ee~e  150 (279)
T 3qwe_A          134 ALRRAQLQYVQRSEDLR  150 (279)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333444444444443

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=89.81  E-value=1.3  Score=33.01  Aligned_cols=46  Identities=11%  Similarity=0.133  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679           53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (504)
Q Consensus        53 qeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~   98 (504)
                      .+|+.+..+|+.|..++..|..++..|+.++..++.|-.+...+|+
T Consensus         4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD   49 (52)
T 1jcd_A            4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD   49 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4566666666666666667777777776666666666666655554

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=89.80  E-value=1.8  Score=40.11  Aligned_cols=22  Identities=9%  Similarity=0.222  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010679          206 QVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       206 qemek~L~sme~EiekLraELe  227 (504)
                      +++.+++..+..++...+.+..
T Consensus       116 ~aL~~Ei~~Lr~qL~~~R~k~~  137 (175)
T 3lay_A          116 NAVAKEMESLGQKLDEQRVKRD  137 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444433

>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}

Probab=89.61  E-value=7.8  Score=32.15  Aligned_cols=19  Identities=37%  Similarity=0.462  Sum_probs=8.3

Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 010679          170 IPALLSELESLRQEYHHCR  188 (504)
Q Consensus       170 l~~L~~EIeaLrqELq~LR  188 (504)
                      +.+|..||..|+++|++++
T Consensus        69 v~elqgEI~~Lnq~Lqda~   87 (99)
T 3ni0_A           69 IKELENEVTKLNQELENLR   87 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444433

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=89.51  E-value=3.3  Score=33.70  Aligned_cols=41  Identities=15%  Similarity=0.160  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010679          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNY  212 (504)
Q Consensus       172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L  212 (504)
                      ++..+|+.|+.|+.+||-.++...-.+..++++.+++-..|
T Consensus        24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL   64 (83)
T 2xdj_A           24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI   64 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555444444444444443333

>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=89.34  E-value=1.4  Score=31.43  Aligned_cols=41  Identities=17%  Similarity=0.323  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679           58 QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (504)
Q Consensus        58 ~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~   98 (504)
                      ++.+|.+|..++-+|+.+-..|+.-++.+++|+.+|+.++.
T Consensus         8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarleneva   48 (52)
T 3he5_B            8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA   48 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence            44555566666666666666666666666666666655543

>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1

Probab=89.32  E-value=12  Score=34.39  Aligned_cols=10  Identities=20%  Similarity=0.165  Sum_probs=3.7

Q ss_pred             HHHHHHHHHh
Q 010679          180 LRQEYHHCRG  189 (504)
Q Consensus       180 LrqELq~LR~  189 (504)
                      |+.||..++.
T Consensus       108 Lq~eL~~~En  117 (171)
T 2etd_A          108 LMDELAGTEN  117 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=89.17  E-value=2.8  Score=31.40  Aligned_cols=28  Identities=18%  Similarity=0.116  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          200 DHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       200 el~eqlqemek~L~sme~EiekLraELe  227 (504)
                      .+...+..+.+.+..+..+|.+++.+++
T Consensus        30 ~~k~~~~~~~~~l~~~~~~I~~~k~qi~   57 (60)
T 3htk_A           30 KAKEKINEIFEKLNTIRDEVIKKKNQNE   57 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444443

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=89.12  E-value=1.3  Score=35.04  Aligned_cols=47  Identities=11%  Similarity=0.072  Sum_probs=27.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L   93 (504)
                      ....|+..|....+||+..+..++.|+.++.+...+|..++.+|+.+
T Consensus        20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf   66 (72)
T 3nmd_A           20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666666666666666665555555555555555555555555444

>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}

Probab=89.08  E-value=1.7  Score=36.74  Aligned_cols=27  Identities=26%  Similarity=0.230  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           62 MQKLATENQRLAATHGTLRQELAAAQH   88 (504)
Q Consensus        62 Iq~Le~e~qrLe~qi~~LkqELa~lqq   88 (504)
                      |+.|+.++...+.++...+++|..+++
T Consensus        37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~   63 (107)
T 2k48_A           37 LQELQENITAHEQQLVTARQKLKDAEK   63 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444445444455444443

>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}

Probab=89.06  E-value=14  Score=34.35  Aligned_cols=14  Identities=14%  Similarity=-0.045  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHH
Q 010679          212 YITMATEVEKLRAE  225 (504)
Q Consensus       212 L~sme~EiekLraE  225 (504)
                      ++.+....+.|...
T Consensus       201 ~~~l~~~W~~L~~l  214 (224)
T 2iak_A          201 RAAMQTQWSWILQL  214 (224)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444433

>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}

Probab=88.99  E-value=6.9  Score=31.29  Aligned_cols=13  Identities=15%  Similarity=0.141  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q 010679          148 ELIAKVHQLTQDL  160 (504)
Q Consensus       148 eL~aqvq~L~~EL  160 (504)
                      +|+..+..|...+
T Consensus        27 ~i~~~l~~L~~~v   39 (99)
T 3zbh_A           27 NVTELIARLDQMS   39 (99)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=88.97  E-value=3  Score=32.75  Aligned_cols=50  Identities=14%  Similarity=0.130  Sum_probs=25.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           44 MMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (504)
Q Consensus        44 ~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L   93 (504)
                      +..+-..+...|..+++++...+.++.+|.+.+.--.+..+.+++||-.+
T Consensus         9 ~~~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl   58 (75)
T 3a7o_A            9 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISG   58 (75)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh
Confidence            34455666666666666666555555555554444444444444444433

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=88.97  E-value=5.9  Score=31.84  Aligned_cols=22  Identities=18%  Similarity=0.413  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHH
Q 010679          111 LTEKIAKMEAELKTAEPVKLEF  132 (504)
Q Consensus       111 L~eki~kLEaEL~ele~LkaEL  132 (504)
                      |.+.+....+||..+...+.||
T Consensus        16 l~E~~~q~qaEl~sLrrT~~EL   37 (78)
T 3iv1_A           16 MKEEMDRAQAELNALKRTEEDL   37 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHH
Confidence            3333444444444333333333

>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}

Probab=88.94  E-value=1.9  Score=36.19  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010679           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE  131 (504)
Q Consensus        52 EqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaE  131 (504)
                      |++...+..+|..|..++++...+.+.|..-+....+     +-.+.+.. ..+.+|.++..+|+.|+.++..++...+|
T Consensus        14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~-----nP~~GD~~-s~~~~L~e~~~kid~L~~el~K~q~~L~e   87 (98)
T 2ke4_A           14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEK-----TPQMGDPA-SLEPQIAETLSNIERLKLEVQKYEAWLAE   87 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----CGGGCCGG-GSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666555555555444322222111     11121111 12556666666666666666655555555


Q ss_pred             HH
Q 010679          132 FQ  133 (504)
Q Consensus       132 Le  133 (504)
                      ++
T Consensus        88 ~e   89 (98)
T 2ke4_A           88 AE   89 (98)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=88.93  E-value=18  Score=40.06  Aligned_cols=18  Identities=0%  Similarity=0.169  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010679          208 MEKNYITMATEVEKLRAE  225 (504)
Q Consensus       208 mek~L~sme~EiekLraE  225 (504)
                      +.+++......++++..+
T Consensus       474 ~~~~~~~~~~~~~~~~~~  491 (695)
T 2j69_A          474 LSRSASQYGASYNQITDQ  491 (695)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=88.87  E-value=1.9  Score=35.19  Aligned_cols=17  Identities=41%  Similarity=0.665  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHhhh
Q 010679           81 QELAAAQHELQILHGQI   97 (504)
Q Consensus        81 qELa~lqqEL~~L~~~L   97 (504)
                      ..|+.++.|+.+|+..+
T Consensus        27 ~Ql~~Lq~Ev~~LRGqi   43 (83)
T 2xdj_A           27 QQLSDNQSDIDSLRGQI   43 (83)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHH
Confidence            33333334444433333

>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.80  E-value=3.6  Score=35.99  Aligned_cols=16  Identities=19%  Similarity=0.237  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          136 KTEAQNLVVAREELIA  151 (504)
Q Consensus       136 r~ELqeL~aerqeL~a  151 (504)
                      +..|.++.....+|..
T Consensus        50 R~kl~~~~~~t~~l~k   65 (130)
T 2dnx_A           50 QENLQQLQHSTNQLAK   65 (130)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*

Probab=88.74  E-value=8  Score=39.73  Aligned_cols=6  Identities=17%  Similarity=0.119  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 010679          183 EYHHCR  188 (504)
Q Consensus       183 ELq~LR  188 (504)
                      |+..++
T Consensus       102 e~~~l~  107 (365)
T 1gqe_A          102 ELDALE  107 (365)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A

Probab=88.60  E-value=5.7  Score=39.59  Aligned_cols=155  Identities=13%  Similarity=0.094  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010679           69 NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREE  148 (504)
Q Consensus        69 ~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqe  148 (504)
                      ..++..-+..+ ++|...-++-..++.+-..       .|..|..+...+-..-.+.-.+..-+..+..+++.+-.....
T Consensus        26 ~~~~~~g~~~~-~el~~f~keRa~iE~~Yak-------~L~kLakk~~~~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~   97 (320)
T 3m3w_A           26 VQRVEDGHRLC-GDLVSCFQERARIEKAYAQ-------QLADWARKWRGAVEKGPQYGTLEKAWHAFFTAAERLSELHLE   97 (320)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHH-HHHHHHHHHH---------hhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---------
Q 010679          149 LIAKVHQ-LTQDLQRAHT---------DVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVME---------  209 (504)
Q Consensus       149 L~aqvq~-L~~ELq~l~~---------elqql~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqeme---------  209 (504)
                      +...+.. +...|..+..         ...+...+...+..+++.++.+..+++..++.+...-.+.+...         
T Consensus        98 ~a~~l~~~v~~~l~~~~k~~~~k~~~~~~ke~K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~~~~d  177 (320)
T 3m3w_A           98 VREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKAD  177 (320)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC


Q ss_pred             -----HHHHHHHHHHHHHHHHHHhccc
Q 010679          210 -----KNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       210 -----k~L~sme~EiekLraELekle~  231 (504)
                           ++++.+...+++...++++.++
T Consensus       178 ~~~s~ke~~K~~~k~~k~~~~~~~a~~  204 (320)
T 3m3w_A          178 SSMSQEQLRKLQERVGRCTKEAEKMKT  204 (320)
T ss_dssp             CCC---CCSSSSSTTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH

>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}

Probab=88.55  E-value=16  Score=34.09  Aligned_cols=35  Identities=11%  Similarity=0.182  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq  161 (504)
                      .+...+..++.-|.....++..|..++..|..++.
T Consensus        84 sLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~E  118 (190)
T 3thf_A           84 SLSERLAQTESSLETRQQERGALESKRDLLYEQME  118 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHH
Confidence            33344444444444444455555555555544443

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=88.54  E-value=2.9  Score=35.08  Aligned_cols=20  Identities=25%  Similarity=0.443  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010679          105 ELQMRNLTEKIAKMEAELKT  124 (504)
Q Consensus       105 E~eL~eL~eki~kLEaEL~e  124 (504)
                      +..|.+..+-|.+|+-|++.
T Consensus        44 e~~l~EA~ell~qMelE~r~   63 (102)
T 1vcs_A           44 EKQLEEARELLEQMDLEVRE   63 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            33444444445555555443

>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}

Probab=88.50  E-value=14  Score=38.62  Aligned_cols=19  Identities=21%  Similarity=0.330  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHhccccc
Q 010679          215 MATEVEKLRAELMNAPNVD  233 (504)
Q Consensus       215 me~EiekLraELekle~~~  233 (504)
                      |..+.++|-.||.++..+.
T Consensus       134 LlDqRD~ll~eLS~~v~v~  152 (463)
T 2d4y_A          134 LLDQRDQLVSELNKIVGVE  152 (463)
T ss_dssp             HHHHHHHHHHHHHHHSCEE
T ss_pred             hHHHHHHHHHHHHhhcCeE
Confidence            3444455556666666544

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=88.37  E-value=5.5  Score=33.40  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010679          104 RELQMRNLTEKIAKMEAELKTA  125 (504)
Q Consensus       104 ~E~eL~eL~eki~kLEaEL~el  125 (504)
                      .+..+.+..+-|.+|+-|++.+
T Consensus        54 ie~~ldEA~eLl~qMelE~r~~   75 (102)
T 2qyw_A           54 FDEKQQEANETLAEMEEELRYA   75 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC
Confidence            3445555555556666655543

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*

Probab=88.23  E-value=2.7  Score=44.81  Aligned_cols=21  Identities=14%  Similarity=0.188  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010679          200 DHLESLQVMEKNYITMATEVE  220 (504)
Q Consensus       200 el~eqlqemek~L~sme~Eie  220 (504)
                      ++.++++++++++..++.++.
T Consensus       115 ~l~~~i~~le~~~~~~~~~~~  135 (484)
T 3lss_A          115 DLSDQVAGLAKEAQQLEEERD  135 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444333

>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}

Probab=88.16  E-value=8.3  Score=30.79  Aligned_cols=14  Identities=21%  Similarity=0.124  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHHH
Q 010679          209 EKNYITMATEVEKL  222 (504)
Q Consensus       209 ek~L~sme~EiekL  222 (504)
                      .+.|......++..
T Consensus        76 ~~~L~~~a~~~~~~   89 (99)
T 3zbh_A           76 GQQLHNSATILEDT   89 (99)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=88.00  E-value=0.96  Score=47.12  Aligned_cols=53  Identities=15%  Similarity=0.122  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       178 eaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      ++++.|++.++++++.++..+++++.+++++.+++...+....+|..+|..++
T Consensus         6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk   58 (403)
T 4etp_A            6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR   58 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33334444444444444444444444444555555555555555555555554

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}

Probab=87.87  E-value=34  Score=37.21  Aligned_cols=33  Identities=18%  Similarity=0.077  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           53 QKIASQHVEMQKLATENQRLAATHGTLRQELAA   85 (504)
Q Consensus        53 qeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~   85 (504)
                      ++-..+..+++.|....+.+++++..|++..+.
T Consensus        12 ~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~   44 (585)
T 1y1u_A           12 QKHLQINQRFEELRLITQDTENELKKLQQTQEY   44 (585)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344555666666666666666666444443

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A

Probab=87.72  E-value=20  Score=34.39  Aligned_cols=25  Identities=16%  Similarity=0.183  Sum_probs=15.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           47 PPEVMEQKIASQHVEMQKLATENQR   71 (504)
Q Consensus        47 ~~~~LEqeLe~~~eEIq~Le~e~qr   71 (504)
                      .-..+|.+++..+..+.+|......
T Consensus        32 d~~~lE~r~d~~k~~~~kl~k~~~~   56 (256)
T 1zww_A           32 DFKEMERKVDVTSRAVMEIMTKTIE   56 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466667777666666666555443

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A

Probab=87.59  E-value=2.1  Score=44.77  Aligned_cols=25  Identities=8%  Similarity=0.080  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          203 ESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       203 eqlqemek~L~sme~EiekLraELe  227 (504)
                      ++.+++.+++..++.++.+++++|.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~   95 (421)
T 1ses_A           71 ARGKALGEEAKRLEEALREKEARLE   95 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444

>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1

Probab=87.58  E-value=19  Score=33.89  Aligned_cols=6  Identities=17%  Similarity=0.340  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 010679           82 ELAAAQ   87 (504)
Q Consensus        82 ELa~lq   87 (504)
                      .|..+.
T Consensus        41 kL~~LE   46 (199)
T 2ap3_A           41 KIAELD   46 (199)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1

Probab=87.30  E-value=17  Score=33.06  Aligned_cols=17  Identities=12%  Similarity=0.032  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679          140 QNLVVAREELIAKVHQL  156 (504)
Q Consensus       140 qeL~aerqeL~aqvq~L  156 (504)
                      ........++...+...
T Consensus       110 ~~F~~~~~~~~~Wl~~~  126 (214)
T 1s35_A          110 QEFQKDAKQAEAILSNQ  126 (214)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444433

>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A

Probab=87.14  E-value=20  Score=33.62  Aligned_cols=45  Identities=16%  Similarity=0.157  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           78 TLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT  124 (504)
Q Consensus        78 ~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~e  124 (504)
                      ...+.+..+...|..+...+..  .+....+..+.+.+..++.....
T Consensus        53 ~~~~~l~~~~~~l~~~~~~~~~--~~~~~~l~~i~~~~~~Y~~~f~~   97 (258)
T 2yfa_A           53 NTLAKLDAFSKQQAYLATTFKS--PENVKLLGELGDTISAYKLSLNK   97 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC--cccHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555444332  11222344444444444444433

>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A

Probab=87.11  E-value=0.99  Score=37.50  Aligned_cols=12  Identities=25%  Similarity=0.440  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHh
Q 010679          217 TEVEKLRAELMN  228 (504)
Q Consensus       217 ~EiekLraELek  228 (504)
                      .||..|+.+|+.
T Consensus        75 eEI~rLr~eLe~   86 (92)
T 3vp9_A           75 EEIKHLKLGLEQ   86 (92)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHH
Confidence            444444444443

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=87.05  E-value=2.4  Score=39.49  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           69 NQRLAATHGTLRQELAAAQHELQI   92 (504)
Q Consensus        69 ~qrLe~qi~~LkqELa~lqqEL~~   92 (504)
                      +++|..+...|.++|+...+|+..
T Consensus        22 V~~L~~En~~L~~ql~~k~~ei~~   45 (190)
T 4emc_A           22 VANLVNENFVLSEKLDTKATEIKQ   45 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444433333333

>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}

Probab=86.99  E-value=2.3  Score=37.14  Aligned_cols=13  Identities=8%  Similarity=0.158  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHH
Q 010679          147 EELIAKVHQLTQD  159 (504)
Q Consensus       147 qeL~aqvq~L~~E  159 (504)
                      ..|.-+++.++..
T Consensus        58 d~L~lQ~esmeaa   70 (130)
T 3cl3_D           58 DQLRMQGQSVEAA   70 (130)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333344444333

>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A

Probab=86.99  E-value=19  Score=33.22  Aligned_cols=23  Identities=17%  Similarity=0.109  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHH
Q 010679          175 SELESLRQEYHHCRGTYEYEKKF  197 (504)
Q Consensus       175 ~EIeaLrqELq~LR~eLe~~kk~  197 (504)
                      .++=.+..|-..++..|-.+.+.
T Consensus       115 ~Qll~l~Aed~AieDaIy~L~~a  137 (174)
T 2p22_A          115 NQLYNLVAQDYALTDTIECLSRM  137 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444433333

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=86.99  E-value=0.51  Score=46.07  Aligned_cols=35  Identities=9%  Similarity=-0.001  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010679          197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (504)
Q Consensus       197 ~~~el~eqlqemek~L~sme~EiekLraELekle~  231 (504)
                      ++..+.++.+.+.+.|..+++||.+|++||++|..
T Consensus        62 ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s   96 (251)
T 3m9b_A           62 RIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ   96 (251)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33344444444555566666777777777777653

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=86.82  E-value=0.99  Score=45.33  Aligned_cols=6  Identities=67%  Similarity=0.933  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 010679          155 QLTQDL  160 (504)
Q Consensus       155 ~L~~EL  160 (504)
                      .+..+|
T Consensus       115 ~~~~eL  120 (302)
T 2y3a_B          115 KLEQDL  120 (302)
T ss_dssp             HHHHHH
T ss_pred             cchhhh
Confidence            333333

>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}

Probab=86.60  E-value=27  Score=34.62  Aligned_cols=12  Identities=8%  Similarity=0.404  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHH
Q 010679          216 ATEVEKLRAELM  227 (504)
Q Consensus       216 e~EiekLraELe  227 (504)
                      ++||+..-.++.
T Consensus       257 e~eI~~Fa~~~~  268 (287)
T 3g9g_A          257 QSEIDRFAKDAS  268 (287)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            455555554443

>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A

Probab=86.53  E-value=11  Score=30.22  Aligned_cols=15  Identities=20%  Similarity=0.322  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679          147 EELIAKVHQLTQDLQ  161 (504)
Q Consensus       147 qeL~aqvq~L~~ELq  161 (504)
                      .++...+..|...|.
T Consensus        25 ~~i~~~l~~L~~~~~   39 (98)
T 3gwk_C           25 QQVTEVLNLLTQEQA   39 (98)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=86.46  E-value=48  Score=37.45  Aligned_cols=13  Identities=15%  Similarity=0.156  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHhc
Q 010679          217 TEVEKLRAELMNA  229 (504)
Q Consensus       217 ~EiekLraELekl  229 (504)
                      -|.++.++.++.+
T Consensus       790 ie~~kf~~~v~ai  802 (861)
T 2zuo_A          790 VEAKKFKEMTEAL  802 (861)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhh
Confidence            3444455544443

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=86.45  E-value=1.9  Score=44.92  Aligned_cols=53  Identities=19%  Similarity=0.174  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA  224 (504)
Q Consensus       172 ~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLra  224 (504)
                      ++..+|+.|++++.+++.+++.++..+.++.+++.+.+.....+-.+++.|+.
T Consensus         7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg   59 (403)
T 4etp_A            7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG   59 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            34444444444444444445555555555555555555444455555555443

>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}

Probab=86.44  E-value=9.7  Score=32.95  Aligned_cols=6  Identities=0%  Similarity=0.689  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 010679          219 VEKLRA  224 (504)
Q Consensus       219 iekLra  224 (504)
                      |++++.
T Consensus       116 Iqkikk  121 (125)
T 4g2k_A          116 IDQIKK  121 (125)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A

Probab=86.34  E-value=13  Score=39.30  Aligned_cols=17  Identities=24%  Similarity=0.407  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679          106 LQMRNLTEKIAKMEAEL  122 (504)
Q Consensus       106 ~eL~eL~eki~kLEaEL  122 (504)
                      .++.+|...+..++.++
T Consensus       299 ~~~~~L~~~l~~v~~~l  315 (483)
T 2j1d_G          299 KEISTLRSGLKAVETEL  315 (483)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33334444444433333

>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}

Probab=86.26  E-value=13  Score=32.28  Aligned_cols=17  Identities=24%  Similarity=0.368  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010679          107 QMRNLTEKIAKMEAELK  123 (504)
Q Consensus       107 eL~eL~eki~kLEaEL~  123 (504)
                      .+..|..-..+.+++|.
T Consensus         6 avdkLe~mFqKA~sDLd   22 (123)
T 4aj5_K            6 EVDKLELMFQKAESDLD   22 (123)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHH
Confidence            33334444444444443

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1

Probab=86.16  E-value=11  Score=34.21  Aligned_cols=16  Identities=13%  Similarity=0.347  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          108 MRNLTEKIAKMEAELK  123 (504)
Q Consensus       108 L~eL~eki~kLEaEL~  123 (504)
                      +..+...|.+++..+.
T Consensus        45 v~~I~~~i~~i~~~v~   60 (180)
T 1s94_A           45 VEEIRAMIDKISDNVD   60 (180)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*

Probab=86.01  E-value=7.2  Score=41.36  Aligned_cols=45  Identities=9%  Similarity=0.040  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       176 EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe  227 (504)
                      |+++++.|+++|++++++++       +-+..-++..+-+..|+..++++..
T Consensus       417 e~~kl~~E~~~l~~~i~~l~-------~iL~~~~~~~~~i~~el~~i~~~yg  461 (470)
T 3ilw_A          417 ERQRIIDDLAKIEAEIADLE-------DILAKPERQRGIVRDELAEIVDRHG  461 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------HHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHhCCHHHHHHHHHHHHHHHHHHhC
Confidence            34555555555555544333       3333333334445556666655554

>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=85.91  E-value=2.6  Score=29.97  Aligned_cols=30  Identities=20%  Similarity=0.186  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          198 YNDHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       198 ~~el~eqlqemek~L~sme~EiekLraELe  227 (504)
                      .-.++..-+.+++-+..+..||.+|+.|++
T Consensus        19 nlqlerdeqnlekiianlrdeiarleneva   48 (52)
T 3he5_B           19 NLQLERDEQNLEKIIANLRDEIARLENEVA   48 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence            333444444455555555555555555554

>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1

Probab=85.91  E-value=19  Score=32.16  Aligned_cols=16  Identities=6%  Similarity=-0.020  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          204 SLQVMEKNYITMATEV  219 (504)
Q Consensus       204 qlqemek~L~sme~Ei  219 (504)
                      ++.+.+.++..|-.+|
T Consensus        90 ~y~~Ae~~l~~LL~~I  105 (151)
T 2pih_A           90 EFRDSQMEVNDLLQLV  105 (151)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333444444444444

>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1

Probab=85.87  E-value=12  Score=32.94  Aligned_cols=6  Identities=17%  Similarity=0.329  Sum_probs=0.0

Q ss_pred             CCCCCC
Q 010679          238 DGSYGG  243 (504)
Q Consensus       238 ~~~yg~  243 (504)
                      ...||.
T Consensus       136 ~~~Y~~  141 (157)
T 2fup_A          136 PSLYDS  141 (157)
T ss_dssp             ------
T ss_pred             ccCcCC
Confidence            345664

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}

Probab=85.61  E-value=25  Score=33.40  Aligned_cols=15  Identities=7%  Similarity=0.308  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHh
Q 010679          175 SELESLRQEYHHCRG  189 (504)
Q Consensus       175 ~EIeaLrqELq~LR~  189 (504)
                      .|++.++.+++..+.
T Consensus       165 eEl~~A~~~fe~~~e  179 (240)
T 2z0v_A          165 EEVRQAVEKFEESKE  179 (240)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444444443333

>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}

Probab=85.60  E-value=5.8  Score=30.95  Aligned_cols=44  Identities=9%  Similarity=0.166  Sum_probs=16.4

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE  225 (504)
Q Consensus       182 qELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraE  225 (504)
                      .||++|..-+..++.++....+--+.|+.++...+..+..|...
T Consensus        17 ~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~   60 (74)
T 2q6q_A           17 NEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKK   60 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Confidence            33333333333333333333333333344433344444444433

>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A

Probab=85.54  E-value=25  Score=37.83  Aligned_cols=14  Identities=43%  Similarity=0.582  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHH
Q 010679          148 ELIAKVHQLTQDLQ  161 (504)
Q Consensus       148 eL~aqvq~L~~ELq  161 (504)
                      ++..+|+.|.+.+.
T Consensus       739 Ev~dKIDNLNQAls  752 (876)
T 4dvy_P          739 EWISKVENLNAALN  752 (876)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444544444443

>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A

Probab=85.46  E-value=5.7  Score=37.45  Aligned_cols=45  Identities=11%  Similarity=0.103  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          105 ELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAK  152 (504)
Q Consensus       105 E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aq  152 (504)
                      +..|..|+.+|...|.+   +..++.++..+...+......+..|+..
T Consensus       104 ~~~ia~~e~Rit~~e~~---i~~l~~~v~~ld~~vt~~et~Isal~~D  148 (242)
T 3c9i_A          104 TKAITALNVRVTTAEGE---IASLQTNVSALDGRVTTAENNISALQAD  148 (242)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhheeeccccc---chhhhhhhhhhcccccccccchhhhhhh
Confidence            34455555555555554   4456666777776666665555555443

>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0

Probab=85.44  E-value=2.9  Score=36.92  Aligned_cols=8  Identities=0%  Similarity=0.140  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q 010679           50 VMEQKIAS   57 (504)
Q Consensus        50 ~LEqeLe~   57 (504)
                      .|.+++..
T Consensus        16 ~I~~r~~~   23 (149)
T 3f31_A           16 DIQERRQQ   23 (149)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}

Probab=85.42  E-value=19  Score=31.76  Aligned_cols=17  Identities=12%  Similarity=0.165  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHhccc
Q 010679          215 MATEVEKLRAELMNAPN  231 (504)
Q Consensus       215 me~EiekLraELekle~  231 (504)
                      +...+...+.-|.-+..
T Consensus       115 i~~~l~~~~~~L~~L~~  131 (154)
T 3opc_A          115 IAVNLRHTQESLDALRQ  131 (154)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            34455555556666653

>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}

Probab=85.40  E-value=1.8  Score=35.04  Aligned_cols=30  Identities=17%  Similarity=0.285  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          131 EFQKSKTEAQNLVVAREELIAKVHQLTQDL  160 (504)
Q Consensus       131 ELeqLr~ELqeL~aerqeL~aqvq~L~~EL  160 (504)
                      +++.|+.++.+|+....++..++..|.++|
T Consensus        16 di~eLkkevkKL~~~A~q~kmdLHDLaEdL   45 (81)
T 3csx_A           16 AVADLKKKVRKLNSKAGQMKMDLHDLAEGL   45 (81)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            344455555555555555555555555443

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=85.18  E-value=3.4  Score=30.57  Aligned_cols=17  Identities=18%  Similarity=0.163  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHh
Q 010679          212 YITMATEVEKLRAELMN  228 (504)
Q Consensus       212 L~sme~EiekLraELek  228 (504)
                      |.....+|.+|+++|++
T Consensus        32 L~~AR~el~~Lkeele~   48 (51)
T 3m91_A           32 LKEARQQLLALREEVDR   48 (51)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333444444444443

>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1

Probab=85.11  E-value=11  Score=33.34  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010679           62 MQKLATENQRLAATHGTLRQELA   84 (504)
Q Consensus        62 Iq~Le~e~qrLe~qi~~LkqELa   84 (504)
                      +..++...+.++.++..+..+|.
T Consensus        23 L~dveksv~~~~k~l~~l~~el~   45 (135)
T 1i6z_A           23 LKDLEVSAEKIANHLQELNKELS   45 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444443333

>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A

Probab=85.08  E-value=16  Score=32.46  Aligned_cols=18  Identities=11%  Similarity=0.165  Sum_probs=6.8

Q ss_pred             HhHHHHHHHHHHHHHHHH
Q 010679          125 AEPVKLEFQKSKTEAQNL  142 (504)
Q Consensus       125 le~LkaELeqLr~ELqeL  142 (504)
                      -..|.++|+.+..++.+|
T Consensus        61 Yk~Lhaev~~v~~~F~~L   78 (140)
T 1xaw_A           61 YKSLQSVLDEINKELSRL   78 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333434433333333333

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=84.86  E-value=4.3  Score=38.98  Aligned_cols=17  Identities=24%  Similarity=0.251  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHhcc
Q 010679          214 TMATEVEKLRAELMNAP  230 (504)
Q Consensus       214 sme~EiekLraELekle  230 (504)
                      .++.+++.++..++++.
T Consensus       116 ~a~a~l~~a~~~l~~~~  132 (277)
T 2f1m_A          116 AAKAAVETARINLAYTK  132 (277)
T ss_dssp             HHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHHHhhcCE
Confidence            33444555566666543

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=84.70  E-value=15  Score=30.75  Aligned_cols=18  Identities=17%  Similarity=0.250  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010679          209 EKNYITMATEVEKLRAEL  226 (504)
Q Consensus       209 ek~L~sme~EiekLraEL  226 (504)
                      ..++.....++++|+.++
T Consensus        84 ~~klr~Yk~dL~~lk~el  101 (102)
T 2qyw_A           84 MSKLRNYRKDLAKLHREV  101 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            333444444444444443

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=84.65  E-value=4.5  Score=30.05  Aligned_cols=10  Identities=0%  Similarity=0.155  Sum_probs=3.9

Q ss_pred             HHHHHHHHHH
Q 010679          179 SLRQEYHHCR  188 (504)
Q Consensus       179 aLrqELq~LR  188 (504)
                      ..+.|..++-
T Consensus        36 ~ak~eA~RAN   45 (52)
T 1jcd_A           36 AAKDDAARAN   45 (52)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3334443333

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=84.60  E-value=11  Score=31.17  Aligned_cols=13  Identities=8%  Similarity=0.330  Sum_probs=4.9

Q ss_pred             HHHHHH-HHHHHHh
Q 010679          216 ATEVEK-LRAELMN  228 (504)
Q Consensus       216 e~Eiek-LraELek  228 (504)
                      .+++.+ |+.++.+
T Consensus        78 k~dl~~~lk~~lk~   91 (97)
T 3onj_A           78 KKTIQSDIKRPLQS   91 (97)
T ss_dssp             HHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            333333 3333333

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=84.52  E-value=0.96  Score=44.13  Aligned_cols=19  Identities=5%  Similarity=0.302  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010679          107 QMRNLTEKIAKMEAELKTA  125 (504)
Q Consensus       107 eL~eL~eki~kLEaEL~el  125 (504)
                      .++.+..++.+|++|++.+
T Consensus        76 ~Lk~ar~El~~LkeElerL   94 (251)
T 3m9b_A           76 TLKEARQQLLALREEVDRL   94 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            4444555555555555443

>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}

Probab=84.50  E-value=16  Score=30.27  Aligned_cols=12  Identities=8%  Similarity=0.318  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHHH
Q 010679          205 LQVMEKNYITMA  216 (504)
Q Consensus       205 lqemek~L~sme  216 (504)
                      +++++.++..+.
T Consensus        69 v~elqgEI~~Ln   80 (99)
T 3ni0_A           69 IKELENEVTKLN   80 (99)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A

Probab=84.40  E-value=36  Score=34.14  Aligned_cols=57  Identities=21%  Similarity=0.250  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          174 LSELESLRQEYHHCRGTYEYEKKFYNDHL----------------------ESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       174 ~~EIeaLrqELq~LR~eLe~~kk~~~el~----------------------eqlqemek~L~sme~EiekLraELekle  230 (504)
                      ..||+.++.||.+.+..|..++--.+++.                      +.++.|+.++..+.+.|++|...|+...
T Consensus       237 ~~ELeSlK~EL~HfE~rL~KlrH~~~El~l~~~k~k~~e~~g~~~~~~~~~~k~~~leek~Kk~~rKV~Kl~~~Le~rI  315 (323)
T 2p01_A          237 DKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRI  315 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888888877776665442222222                      2245677777777777777777777644

>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}

Probab=84.38  E-value=9.4  Score=34.39  Aligned_cols=7  Identities=14%  Similarity=0.544  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 010679          177 LESLRQE  183 (504)
Q Consensus       177 IeaLrqE  183 (504)
                      ++.++..
T Consensus        75 i~~iq~q   81 (150)
T 4dci_A           75 VANIQQQ   81 (150)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}

Probab=84.29  E-value=0.88  Score=47.74  Aligned_cols=12  Identities=17%  Similarity=0.476  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHHH
Q 010679          149 LIAKVHQLTQDL  160 (504)
Q Consensus       149 L~aqvq~L~~EL  160 (504)
                      |+++++.+.++|
T Consensus        49 l~~~~n~~sk~i   60 (425)
T 2dq3_A           49 LRSERNKLSKEI   60 (425)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A

Probab=84.07  E-value=24  Score=35.68  Aligned_cols=146  Identities=14%  Similarity=0.129  Sum_probs=0.0

Q ss_pred             HHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--
Q 010679           93 LHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI--  170 (504)
Q Consensus        93 L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql--  170 (504)
                      +..-++.+.......++.+.++++++|.++-.-..     .....++..++.++-.+...+..+..-+.++.......  
T Consensus       182 l~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~-----~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~  256 (363)
T 2iub_A          182 LYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPE-----KETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIE  256 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC


Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCCCCCC
Q 010679          171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRAADGSYGGATGN  247 (504)
Q Consensus       171 ~~L~~EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle~~~~~~~~~~yg~~~~~  247 (504)
                      ++.+..+..+..++.++...++..+..+..+.+....+..+.....-.+=.+-+-+=-    .-.-..+-||||+.+
T Consensus       257 ~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~Ifl----P~T~IaGiyGMNf~~  329 (363)
T 2iub_A          257 KETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFM----PLTFIAGIYGMNFEY  329 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTSCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhcccCCC

>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}

Probab=83.70  E-value=3.2  Score=32.78  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          132 FQKSKTEAQNLVVAREELIAKVHQLTQD  159 (504)
Q Consensus       132 LeqLr~ELqeL~aerqeL~aqvq~L~~E  159 (504)
                      ++.++.++.+|+....++..++..|.++
T Consensus         5 i~eLkkevkKL~~~A~q~kmdLHDLaEd   32 (71)
T 2js5_A            5 AEELKAKLKKLNAQATALKMDLHDLAED   32 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence            4444455555554444444444444433

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=83.67  E-value=40  Score=34.07  Aligned_cols=27  Identities=4%  Similarity=-0.011  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKLATENQRLAATHG   77 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le~e~qrLe~qi~   77 (504)
                      ....|...++++..++..+.+|.....
T Consensus        19 FR~~l~~~E~~~~~l~~~l~kl~k~~~   45 (385)
T 2q13_A           19 TRSLLGVFEEDATAISNYMNQLYQAMH   45 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444333

>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1

Probab=83.67  E-value=1.9  Score=40.81  Aligned_cols=25  Identities=12%  Similarity=0.246  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679           71 RLAATHGTLRQELAAAQHELQILHG   95 (504)
Q Consensus        71 rLe~qi~~LkqELa~lqqEL~~L~~   95 (504)
                      ++..+++.++++|..+++.+..+..
T Consensus        19 q~~~Ql~~~k~Ql~q~k~qy~sltG   43 (213)
T 1r8i_A           19 QMAQQLEQLKSQLETQKNMYESMAK   43 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            3333444444444444444444433

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=83.62  E-value=5.2  Score=30.37  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILH   94 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~   94 (504)
                      ++...|...+.+|+.|..-+..|.+++..++.+|..++.|-..|+
T Consensus        17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr   61 (63)
T 2w6a_A           17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence            455667777778888888788888777777777777666655443

>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}

Probab=83.54  E-value=4.3  Score=43.57  Aligned_cols=45  Identities=9%  Similarity=0.125  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      +++|++|+++++.+       ++++++-+..-++...-+..|+..++++...
T Consensus       456 ~~kl~~E~~~l~~e-------i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~  500 (514)
T 2inr_A          456 IVALEGEHKELEAL-------IKQLRHILDNHDALLNVIKEELNEIKKKFKS  500 (514)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Confidence            44444444444444       3344444443333444556666666666554

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}

Probab=83.45  E-value=26  Score=35.02  Aligned_cols=145  Identities=13%  Similarity=0.101  Sum_probs=0.0

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHhhhc----cc-hHHHHHHHHHHH
Q 010679           44 MMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQE---LAAAQH---ELQILHGQIG----GM-KSERELQMRNLT  112 (504)
Q Consensus        44 ~~p~~~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqE---La~lqq---EL~~L~~~L~----~l-~ae~E~eL~eL~  112 (504)
                      ++.....+++.+..+..++..+..++.+|..++..|++.   ++.+..   .|. +...+.    .+ ..+...++....
T Consensus        90 ~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~~ld-~~~~~g~~~g~ip~~~~~~~~~~~l  168 (357)
T 3rrk_A           90 FTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHGLD-ESPRLGVIPFLVAKPEELEAVRKAL  168 (357)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-TCTTEEEEEEEESCHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccCC-ccceeeeeeEEecChhhHHHHHHHH


Q ss_pred             HHHHHH--------------------HHHHHHHhHHHHH-----------HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          113 EKIAKM--------------------EAELKTAEPVKLE-----------FQ--KSKTEAQNLVVAREELIAKVHQLTQD  159 (504)
Q Consensus       113 eki~kL--------------------EaEL~ele~LkaE-----------Le--qLr~ELqeL~aerqeL~aqvq~L~~E  159 (504)
                      .+...-                    +....++..+...           ..  .....+.++..++++|..+++.++.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~  248 (357)
T 3rrk_A          169 QEALADRFVLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREE  248 (357)
T ss_dssp             HHHHTTSCEEEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCeEEEEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHh-hhhhhHHHHHHHHHHHHHHHHHh
Q 010679          160 LQRAHTD-VQQIPALLSELESLRQEYHHCRG  189 (504)
Q Consensus       160 Lq~l~~e-lqql~~L~~EIeaLrqELq~LR~  189 (504)
                      |..+..+ ...+..+...+...+...+.+..
T Consensus       249 l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~  279 (357)
T 3rrk_A          249 VARLSRESGEALIALWTRAKDEVARYKAVAD  279 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh

>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*

Probab=83.22  E-value=18  Score=38.29  Aligned_cols=10  Identities=20%  Similarity=0.405  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 010679          147 EELIAKVHQL  156 (504)
Q Consensus       147 qeL~aqvq~L  156 (504)
                      .+|..++..|
T Consensus       426 ~~l~~~i~~l  435 (470)
T 3ilw_A          426 AKIEAEIADL  435 (470)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T

Probab=83.00  E-value=15  Score=30.45  Aligned_cols=15  Identities=7%  Similarity=0.089  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKL   65 (504)
Q Consensus        51 LEqeLe~~~eEIq~L   65 (504)
                      +++++......++.+
T Consensus        11 V~~D~~~ql~~l~~~   25 (95)
T 2c5k_T           11 VVKDTKEQLNRINNY   25 (95)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444434333

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=82.99  E-value=2.7  Score=43.85  Aligned_cols=50  Identities=16%  Similarity=0.175  Sum_probs=23.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010679          181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (504)
Q Consensus       181 rqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELekle  230 (504)
                      +.|+.++++.++.+++.+.++..++++++++|...+.+..+|..+|..++
T Consensus         9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~   58 (412)
T 3u06_A            9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR   58 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33333333333333333444444444444444444555555555655554

>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}

Probab=82.96  E-value=4.6  Score=34.51  Aligned_cols=13  Identities=15%  Similarity=0.335  Sum_probs=5.6

Q ss_pred             ChHHHHHHHHHHH
Q 010679           47 PPEVMEQKIASQH   59 (504)
Q Consensus        47 ~~~~LEqeLe~~~   59 (504)
                      .++.|+.+|+...
T Consensus        23 ~ieeLq~Ei~~~E   35 (113)
T 4fi5_A           23 TMEELQREINAHE   35 (113)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            3444444444333

>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=82.94  E-value=0.99  Score=28.32  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           62 MQKLATENQRLAATHGTLRQELAAA   86 (504)
Q Consensus        62 Iq~Le~e~qrLe~qi~~LkqELa~l   86 (504)
                      |++|...+.+|..++..|+-+++++
T Consensus         2 irrlkqknarlkqeiaaleyeiaal   26 (28)
T 3ra3_B            2 IRRLKQKNARLKQEIAALEYEIAAL   26 (28)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence            4455555666666555555555443

>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1

Probab=82.84  E-value=3.3  Score=30.81  Aligned_cols=15  Identities=20%  Similarity=0.379  Sum_probs=6.3

Q ss_pred             hHHHHHHHHHHHHHH
Q 010679          126 EPVKLEFQKSKTEAQ  140 (504)
Q Consensus       126 e~LkaELeqLr~ELq  140 (504)
                      +.++...++++..++
T Consensus        28 eelkkkweelkkkie   42 (67)
T 1lq7_A           28 EELKKKWEELKKKIE   42 (67)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444333

>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}

Probab=82.79  E-value=4.7  Score=44.91  Aligned_cols=46  Identities=13%  Similarity=0.008  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       176 EIeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      |++++++|+++|+++++       ++++-+..-++.+..+.+|+.+++++...
T Consensus       403 e~~kl~~E~~eL~~~i~-------~l~~iL~~~~~l~~~i~~EL~~i~~kygd  448 (716)
T 1zvu_A          403 EEMKIRGEQSELEKERD-------QLQGILASERKMNNLLKKELQADAQAYGD  448 (716)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence            34455555555554444       44444444444445556666666666654

>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}

Probab=82.49  E-value=16  Score=30.46  Aligned_cols=14  Identities=0%  Similarity=-0.054  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHhh
Q 010679          177 LESLRQEYHHCRGT  190 (504)
Q Consensus       177 IeaLrqELq~LR~e  190 (504)
                      |..+..+|+.|+.+
T Consensus        64 L~e~~~kid~L~~e   77 (98)
T 2ke4_A           64 IAETLSNIERLKLE   77 (98)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*

Probab=82.43  E-value=45  Score=33.77  Aligned_cols=26  Identities=15%  Similarity=0.017  Sum_probs=12.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLA   73 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe   73 (504)
                      .+.+..-|..+..-+..|.....++.
T Consensus       170 ~~~~~~~~~~l~~~~~~l~~~~~~~~  195 (366)
T 3dyt_A          170 CEAVGKFTKAMDDGVKELLTVGQEHW  195 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555544444443

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=82.38  E-value=2.7  Score=40.46  Aligned_cols=11  Identities=18%  Similarity=0.217  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHh
Q 010679          218 EVEKLRAELMN  228 (504)
Q Consensus       218 EiekLraELek  228 (504)
                      +++.++++|+.
T Consensus       113 ~l~~a~a~l~~  123 (277)
T 2f1m_A          113 AVTAAKAAVET  123 (277)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            34444444433

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=82.17  E-value=2.9  Score=46.27  Aligned_cols=11  Identities=9%  Similarity=0.051  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHH
Q 010679           53 QKIASQHVEMQ   63 (504)
Q Consensus        53 qeLe~~~eEIq   63 (504)
                      ++|+...++..
T Consensus       527 ~ei~~~~~~~~  537 (675)
T 3d2f_A          527 KKLNELIEKEN  537 (675)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            34444444333

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}

Probab=82.15  E-value=48  Score=33.93  Aligned_cols=48  Identities=17%  Similarity=0.233  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 010679           48 PEVMEQKIASQHVEMQKLATENQRLAATH-GTLRQELAAAQHELQILHG   95 (504)
Q Consensus        48 ~~~LEqeLe~~~eEIq~Le~e~qrLe~qi-~~LkqELa~lqqEL~~L~~   95 (504)
                      .+.++.-|..+..-+..|....+++...+ ..++.++..+-..+..+..
T Consensus       190 ~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~~~~~~e~~~l~~~l~~l~~  238 (386)
T 4akv_A          190 VDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISH  238 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555444444332 2344444444444444433

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=82.08  E-value=7  Score=29.16  Aligned_cols=12  Identities=8%  Similarity=0.163  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHHH
Q 010679           52 EQKIASQHVEMQ   63 (504)
Q Consensus        52 EqeLe~~~eEIq   63 (504)
                      +..+..+.+++.
T Consensus        11 ~~~~~~~~~~~~   22 (60)
T 3htk_A           11 ENQVEELTEKCS   22 (60)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=82.05  E-value=20  Score=41.58  Aligned_cols=15  Identities=7%  Similarity=-0.059  Sum_probs=7.3

Q ss_pred             ChHHHHHHHHHHHHH
Q 010679           47 PPEVMEQKIASQHVE   61 (504)
Q Consensus        47 ~~~~LEqeLe~~~eE   61 (504)
                      ....||+..+....+
T Consensus       750 ~l~~LE~~R~~~l~~  764 (1010)
T 1g8x_A          750 QLARIEEAREQRLGS  764 (1010)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHH
Confidence            345565555544433

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=81.71  E-value=3.5  Score=33.09  Aligned_cols=42  Identities=12%  Similarity=0.079  Sum_probs=16.5

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       186 ~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe  227 (504)
                      +|+..+.+....+++|.+.+-...+.+..+.+.+..|...+.
T Consensus        18 ~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~   59 (78)
T 3efg_A           18 ELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG   59 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333444433333444444444444444444433

>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*

Probab=81.70  E-value=8.2  Score=42.81  Aligned_cols=45  Identities=13%  Similarity=0.084  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       177 IeaLrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      ++++++|++++.++++.+       ++-+..-.+-...+..|+..++++...
T Consensus       639 ~~kl~~E~~~l~~~i~~l-------~~iL~~~~~~~~~i~~el~~i~~~yg~  683 (692)
T 2xcs_B          639 RDKIEAEYNELLNYISEL-------ETILADEEVLLQLVRDELTEIRDRFGD  683 (692)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHHHHHHHHcCC
Confidence            444445555544444433       333333333334455666666555544

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=81.68  E-value=16  Score=41.15  Aligned_cols=16  Identities=25%  Similarity=0.341  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          107 QMRNLTEKIAKMEAEL  122 (504)
Q Consensus       107 eL~eL~eki~kLEaEL  122 (504)
                      ++..+..++.+++.++
T Consensus       402 ~l~~~~~~~~~~~~~~  417 (854)
T 1qvr_A          402 EIDALERKKLQLEIER  417 (854)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            3444444444444443

>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}

Probab=81.65  E-value=54  Score=34.16  Aligned_cols=15  Identities=13%  Similarity=0.293  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679           65 LATENQRLAATHGTL   79 (504)
Q Consensus        65 Le~e~qrLe~qi~~L   79 (504)
                      +..++..|+.++..+
T Consensus       195 ll~el~~le~elA~~  209 (413)
T 4hpq_C          195 FTNEADQLEQELADF  209 (413)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH
Confidence            445555666555554

>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}

Probab=81.50  E-value=5.6  Score=29.68  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHH
Q 010679          176 ELESLRQEYHHCRGTYEYEKKF  197 (504)
Q Consensus       176 EIeaLrqELq~LR~eLe~~kk~  197 (504)
                      ++..|++|...+...++.+++.
T Consensus        18 qV~eL~qe~k~m~k~lEeEqkA   39 (56)
T 2w6b_A           18 EVQELRQDNKKMKKSLEEEQRA   39 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444333333

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=81.40  E-value=5.9  Score=39.63  Aligned_cols=16  Identities=19%  Similarity=0.407  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010679          209 EKNYITMATEVEKLRA  224 (504)
Q Consensus       209 ek~L~sme~EiekLra  224 (504)
                      ++.+.++.-++-+|+.
T Consensus       131 er~ln~~~pdw~~l~k  146 (302)
T 2y3a_B          131 DKRMNSLKPDLMQLRK  146 (302)
T ss_dssp             HHHHHHHTHHHHHHHH
T ss_pred             HhhhccCChHHHHHhh
Confidence            3333333334433333

>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}

Probab=81.25  E-value=22  Score=30.78  Aligned_cols=22  Identities=18%  Similarity=0.155  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010679           67 TENQRLAATHGTLRQELAAAQH   88 (504)
Q Consensus        67 ~e~qrLe~qi~~LkqELa~lqq   88 (504)
                      ....+|+..+.....+|+-++.
T Consensus         5 ~avdkLe~mFqKA~sDLdyiq~   26 (123)
T 4aj5_K            5 AEVDKLELMFQKAESDLDYIQY   26 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHH
Confidence            3344444444444444444433

>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*

Probab=81.11  E-value=17  Score=34.55  Aligned_cols=14  Identities=14%  Similarity=0.112  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEM   62 (504)
Q Consensus        49 ~~LEqeLe~~~eEI   62 (504)
                      -.|-.+|=+.+.|-
T Consensus        44 yliSKEiyVvneEt   57 (214)
T 2cly_A           44 YLLSKEIYVITPET   57 (214)
T ss_dssp             --------------
T ss_pred             HHHcCceEEEechH
Confidence            44555666665554

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=81.07  E-value=11  Score=28.57  Aligned_cols=39  Identities=10%  Similarity=0.116  Sum_probs=16.5

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          184 YHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL  222 (504)
Q Consensus       184 Lq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekL  222 (504)
                      |...++.++.+.+-+..+.++++-|.+.+.++..|-..|
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L   60 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence            333333344444444444444444444444444443333

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=81.04  E-value=2.7  Score=31.29  Aligned_cols=26  Identities=27%  Similarity=0.250  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010679          176 ELESLRQEYHHCRGTYEYEKKFYNDH  201 (504)
Q Consensus       176 EIeaLrqELq~LR~eLe~~kk~~~el  201 (504)
                      ++++|+.|+++|+.+++.++++++++
T Consensus        20 d~eaLk~E~~eLk~k~~~L~~~~~el   45 (53)
T 2yy0_A           20 EIELLRLELAEMKEKYEAIVEENKKL   45 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555554444443333333

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=80.99  E-value=9.1  Score=30.07  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 010679           70 QRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKME  119 (504)
Q Consensus        70 qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLE  119 (504)
                      ..+...+..|+++|....+||.+|+..+.-    +.+....|.++|-.+.
T Consensus        14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~l----k~kd~ErLNDEiislN   59 (75)
T 3a7o_A           14 DALLNTLAILQKELKSKEQEIRRLKEVIAL----KNKNTERLNDELISGT   59 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccHHHhhHHHHHhH
Confidence            344446667777777777777777666543    2333444555544443

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=80.78  E-value=3.4  Score=32.57  Aligned_cols=46  Identities=20%  Similarity=0.295  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILH   94 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~   94 (504)
                      +.-++.|..+..+|..|+..+..|..+...|+.++..+..|+..++
T Consensus        25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E           25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC

>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}

Probab=80.64  E-value=17  Score=29.24  Aligned_cols=47  Identities=23%  Similarity=0.256  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010679          146 REELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKF  197 (504)
Q Consensus       146 rqeL~aqvq~L~~ELq~l~~elqql~~L~~EIeaLrqELq~LR~eLe~~kk~  197 (504)
                      +++.+.-++.|++||+....+.     --.+|..-.+.|.+++++|..+...
T Consensus        31 I~DKQ~~i~~Lt~eLq~A~~ea-----NpaeIA~~~~~L~qAraDL~~l~r~   77 (90)
T 4b6x_A           31 IEDKQLMVNNLTDELQDAIDEA-----NPAEIANTSQQLRHARADLADLQRR   77 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc-----CHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3333344445555555443332     1234444445555555554444333

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=80.52  E-value=6.1  Score=29.01  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHH
Q 010679          173 LLSELESLRQEYHHCRGTYEYE  194 (504)
Q Consensus       173 L~~EIeaLrqELq~LR~eLe~~  194 (504)
                      |..+++.|+.|-..||+||+.-
T Consensus         8 L~~QVe~Lk~ENshLrrEL~dN   29 (54)
T 1deb_A            8 LLKQVEALKMENSNLRQELEDN   29 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHhh
Confidence            3444555555555555554433

>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1

Probab=80.30  E-value=33  Score=32.45  Aligned_cols=15  Identities=13%  Similarity=0.085  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQ   63 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq   63 (504)
                      ..+=++|-.+...|.
T Consensus        15 ~~~~~~iG~ltR~Lh   29 (214)
T 1kmi_Z           15 GDIIARIGSLTRMLR   29 (214)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            334445544444443

>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}

Probab=80.25  E-value=11  Score=41.89  Aligned_cols=25  Identities=8%  Similarity=0.213  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           64 KLATENQRLAATHGTLRQELAAAQH   88 (504)
Q Consensus        64 ~Le~e~qrLe~qi~~LkqELa~lqq   88 (504)
                      ++...++.+++++.+|-.+|+.+++
T Consensus        14 ~i~~~i~~~~~~r~~l~~~~~~~~~   38 (706)
T 3fhn_A           14 NINDRIKQVQNERNELASKLQNLKQ   38 (706)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444445555555555555544444

>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P

Probab=80.11  E-value=36  Score=31.14  Aligned_cols=31  Identities=6%  Similarity=0.010  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQKLATE--NQRLAATHGTLR   80 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e--~qrLe~qi~~Lk   80 (504)
                      .-+.+|+.+...+-.|..+  ..+|...+..++
T Consensus        49 na~grLTLLLGnL~~IlG~~SlTqL~nrL~~wl   81 (201)
T 3u0c_A           49 NASSQLTLLIGNLIQILGEKSLTALTNKITAWK   81 (201)
T ss_dssp             CHHHHHHHHHHHHHHHHCSGGGHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3467788888777666654  345555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	504
d1u2ma_	143	f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Esc	7e-04

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	504
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	97.43
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	97.08
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	96.97
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	96.81
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	96.69
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	96.54
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	96.34
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	96.26
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	96.2
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	96.18
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	95.97
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	95.87
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	95.87
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	95.66
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	95.41
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.43
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.4
d1gqea_	362	Polypeptide chain release factor 2 (RF2) {Escheric	94.06
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.85
d1gqea_	362	Polypeptide chain release factor 2 (RF2) {Escheric	93.84
d1bf5a1	181	STAT-1, coiled coil domain {Human (Homo sapiens) [	93.66
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.63
d2etda1	149	Hypothetical protein TM0961 {Thermotoga maritima [	92.85
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	90.78
d1owaa_	156	Spectrin alpha chain {Human (Homo sapiens) [TaxId:	90.06
d1bg1a1	186	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	89.87
d1gs9a_	144	Apolipoprotein E {Human (Homo sapiens), E4 [TaxId:	89.33
d1y2oa1	248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	88.74
d1bf5a1	181	STAT-1, coiled coil domain {Human (Homo sapiens) [	88.32
d1bjta_	760	DNA topoisomerase II, C-terminal fragment (residue	87.98
d1owaa_	156	Spectrin alpha chain {Human (Homo sapiens) [TaxId:	87.77
d1eq1a_	166	Apolipophorin-III {Manduca sexta [TaxId: 7130]}	87.09
d1bg1a1	186	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	86.21
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	84.53
d1u5pa1	110	Spectrin alpha chain {Chicken (Gallus gallus) [Tax	83.98
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	81.56

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.43  E-value=0.0067  Score=50.96  Aligned_cols=48  Identities=8%  Similarity=-0.018  Sum_probs=20.8

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       180 LrqELq~LR~eLe~~kk~~~el~eqlqemek~L~sme~EiekLraELe  227 (504)
                      +...+..+...+..+...+..+...+..+...+..+...+.++..+..
T Consensus       135 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ek~  182 (185)
T d2ap3a1         135 LFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQ  182 (185)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333333344444444444444444444444444444444444433

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.08  E-value=0.013  Score=49.05  Aligned_cols=25  Identities=12%  Similarity=0.187  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc
Q 010679           74 ATHGTLRQELAAAQHELQILHGQIG   98 (504)
Q Consensus        74 ~qi~~LkqELa~lqqEL~~L~~~L~   98 (504)
                      ..+..+...|..+..++..+...+.
T Consensus        22 ~~~~~~~~k~~~~e~~~~~~~~~~~   46 (185)
T d2ap3a1          22 EPIKTVGKKIAELDEKKKKLTEDVN   46 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444455544444443

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.12  Score=47.35  Aligned_cols=16  Identities=0%  Similarity=0.005  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHhcc
Q 010679          215 MATEVEKLRAELMNAP  230 (504)
Q Consensus       215 me~EiekLraELekle  230 (504)
                      +...++.|...|+.+.
T Consensus       245 ~~~~~~~l~~~~~~id  260 (288)
T d2efla1         245 IGKCLDGIVKAAESID  260 (288)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHCC
Confidence            4444555566665554

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.094  Score=48.09  Aligned_cols=9  Identities=11%  Similarity=0.062  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 010679          213 ITMATEVEK  221 (504)
Q Consensus       213 ~sme~Eiek  221 (504)
                      +.+...++.
T Consensus       250 ~~l~~~~~~  258 (288)
T d2efla1         250 DGIVKAAES  258 (288)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            333333333

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.14  Score=47.36  Aligned_cols=15  Identities=20%  Similarity=0.370  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHH
Q 010679          211 NYITMATEVEKLRAE  225 (504)
Q Consensus       211 ~L~sme~EiekLraE  225 (504)
                      ....|..+|++|+.+
T Consensus       285 ~~~~l~~ei~~Lk~~  299 (300)
T d1f5na1         285 ESRIMKNEIQDLQTK  299 (300)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            344444555554443

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.21  Score=43.23  Aligned_cols=28  Identities=7%  Similarity=0.044  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           54 KIASQHVEMQKLATENQRLAATHGTLRQ   81 (504)
Q Consensus        54 eLe~~~eEIq~Le~e~qrLe~qi~~Lkq   81 (504)
                      +++...+.+..++....+|......+..
T Consensus         7 e~e~~~~~l~~~~~~~~~l~k~~k~~~~   34 (200)
T d1i4da_           7 ELELQIELLRETKRKYESVLQLGRALTA   34 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444443333

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.34  E-value=0.29  Score=42.79  Aligned_cols=34  Identities=6%  Similarity=0.113  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELA   84 (504)
Q Consensus        51 LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa   84 (504)
                      ++++++....+++.++....+|......+...+.
T Consensus        10 ~D~~fe~~~~~~~~~e~~l~~l~k~~~~~~~~~~   43 (217)
T d1urua_          10 ADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVR   43 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666666666666665555555544443

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.26  E-value=0.024  Score=47.71  Aligned_cols=26  Identities=15%  Similarity=0.264  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          198 YNDHLESLQVMEKNYITMATEVEKLR  223 (504)
Q Consensus       198 ~~el~eqlqemek~L~sme~EiekLr  223 (504)
                      ++.+.+++..+..++..+..+++++.
T Consensus       104 ~~~l~~~~~~~~~~i~~l~~~~~~l~  129 (133)
T d1fxkc_         104 LQKMGENLRAITDIMMKLSPQAEELL  129 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444433

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.20  E-value=0.014  Score=47.77  Aligned_cols=38  Identities=16%  Similarity=0.288  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (504)
Q Consensus       127 ~LkaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~  164 (504)
                      .+.+++..++.+++.+...+++|..++++.+..+..+.
T Consensus         5 e~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~   42 (107)
T d1fxka_           5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELS   42 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555566555555554444433

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.18  E-value=0.04  Score=44.82  Aligned_cols=29  Identities=3%  Similarity=0.129  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          200 DHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       200 el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      .+...++.+++++..+..++++++.+|.+
T Consensus        76 ~l~~~i~~l~~q~~~l~~~l~~~~~~l~~  104 (107)
T d1fxka_          76 TLQLREKTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444555555555444

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.97  E-value=0.059  Score=45.10  Aligned_cols=34  Identities=24%  Similarity=0.203  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010679          195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (504)
Q Consensus       195 kk~~~el~eqlqemek~L~sme~EiekLraELek  228 (504)
                      ++++..+++.++.+.+++..+...+..+..++++
T Consensus        94 ~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~  127 (133)
T d1fxkc_          94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEE  127 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444443

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.87  E-value=0.3  Score=42.73  Aligned_cols=49  Identities=6%  Similarity=-0.020  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      +.+++++..++..+..|......+...+..+-.-...+-+.+..+....
T Consensus        15 e~~~~~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~   63 (217)
T d1urua_          15 DDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQ   63 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            5678888888888888888888887777766555555555555554433

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.61  Score=42.17  Aligned_cols=11  Identities=9%  Similarity=0.193  Sum_probs=4.6

Q ss_pred             HHHHHHHHHhc
Q 010679          219 VEKLRAELMNA  229 (504)
Q Consensus       219 iekLraELekl  229 (504)
                      ++.+...++.+
T Consensus       240 ~~~l~~~~~~i  250 (279)
T d2efka1         240 LEGMKVAANAV  250 (279)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHC
Confidence            34444444443

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.31  Score=44.82  Aligned_cols=16  Identities=13%  Similarity=0.289  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHhcc
Q 010679          215 MATEVEKLRAELMNAP  230 (504)
Q Consensus       215 me~EiekLraELekle  230 (504)
                      +..+...++.+++.|+
T Consensus       282 ~~~~~~~l~~ei~~Lk  297 (300)
T d1f5na1         282 FQKESRIMKNEIQDLQ  297 (300)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5566777777777664

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.89  Score=40.97  Aligned_cols=14  Identities=7%  Similarity=0.019  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHH
Q 010679          211 NYITMATEVEKLRA  224 (504)
Q Consensus       211 ~L~sme~EiekLra  224 (504)
                      ..+.+...++.+..
T Consensus       239 ~~~~l~~~~~~id~  252 (279)
T d2efka1         239 CLEGMKVAANAVDP  252 (279)
T ss_dssp             HHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHCCh
Confidence            33444444444433

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.43  E-value=0.18  Score=49.90  Aligned_cols=19  Identities=21%  Similarity=0.270  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010679          106 LQMRNLTEKIAKMEAELKT  124 (504)
Q Consensus       106 ~eL~eL~eki~kLEaEL~e  124 (504)
                      .++..+..++..++.|...
T Consensus       253 ~el~~ler~I~qLe~E~~a  271 (387)
T d1qvra2         253 EEIDALERKKLQLEIEREA  271 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555443

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.40  E-value=1.3  Score=37.79  Aligned_cols=14  Identities=21%  Similarity=0.354  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHH
Q 010679           54 KIASQHVEMQKLAT   67 (504)
Q Consensus        54 eLe~~~eEIq~Le~   67 (504)
                      ++..+..+|..+..
T Consensus        10 ~v~~I~~~i~~i~~   23 (196)
T d1fioa_          10 KISQINRDLDKYDH   23 (196)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333344333333

>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.28  Score=48.10  Aligned_cols=13  Identities=15%  Similarity=0.394  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHhhh
Q 010679           85 AAQHELQILHGQI   97 (504)
Q Consensus        85 ~lqqEL~~L~~~L   97 (504)
                      .++.++..|+..+
T Consensus        26 ~kk~Rl~ELE~~l   38 (362)
T d1gqea_          26 AKKERLEEVNAEL   38 (362)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            3333344443333

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.85  E-value=1.7  Score=37.02  Aligned_cols=13  Identities=0%  Similarity=0.276  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHHH
Q 010679           61 EMQKLATENQRLA   73 (504)
Q Consensus        61 EIq~Le~e~qrLe   73 (504)
                      +++.+..++..+.
T Consensus        10 ~v~~I~~~i~~i~   22 (196)
T d1fioa_          10 KISQINRDLDKYD   22 (196)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.35  Score=47.32  Aligned_cols=16  Identities=13%  Similarity=0.343  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHh
Q 010679           80 RQELAAAQHELQILHG   95 (504)
Q Consensus        80 kqELa~lqqEL~~L~~   95 (504)
                      +.+|..+++.+..|..
T Consensus         5 ~~~i~eL~~rl~~Lr~   20 (362)
T d1gqea_           5 NNRIQDLTERSDVLRG   20 (362)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444444444433

>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: STAT-like
superfamily: STAT
family: STAT
domain: STAT-1, coiled coil domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=2.1  Score=37.59  Aligned_cols=24  Identities=13%  Similarity=0.199  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQKLATENQRLA   73 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe   73 (504)
                      .|+.+|..++..++.++.+++.|+
T Consensus         6 ei~~~v~~l~~~vq~~e~~ik~Le   29 (181)
T d1bf5a1           6 ELDSKVRNVKDKVMCIEHEIKSLE   29 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555554444444444

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.63  E-value=0.34  Score=47.77  Aligned_cols=8  Identities=0%  Similarity=-0.101  Sum_probs=2.8

Q ss_pred             HHHHHHHH
Q 010679           81 QELAAAQH   88 (504)
Q Consensus        81 qELa~lqq   88 (504)
                      .++..++.
T Consensus       260 r~I~qLe~  267 (387)
T d1qvra2         260 RKKLQLEI  267 (387)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: LemA-like
family: LemA-like
domain: Hypothetical protein TM0961
species: Thermotoga maritima [TaxId: 2336]

Probab=92.85  E-value=1.2  Score=37.58  Aligned_cols=13  Identities=15%  Similarity=0.110  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHhhH
Q 010679          179 SLRQEYHHCRGTY  191 (504)
Q Consensus       179 aLrqELq~LR~eL  191 (504)
                      .|+.++..++.+|
T Consensus        95 ~l~~~l~~~E~~I  107 (149)
T d2etda1          95 QLMDELAGTENRI  107 (149)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333433333333

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.78  E-value=4.1  Score=34.37  Aligned_cols=44  Identities=14%  Similarity=0.059  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L   93 (504)
                      ...+.|......++.|......+...+..+-.....+-..+..+
T Consensus        10 ~~~~~l~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~   53 (200)
T d1i4da_          10 LQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADL   53 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555666666777777777666666666555444444444333

>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=1.5  Score=36.14  Aligned_cols=28  Identities=0%  Similarity=0.011  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010679           72 LAATHGTLRQELAAAQHELQILHGQIGG   99 (504)
Q Consensus        72 Le~qi~~LkqELa~lqqEL~~L~~~L~~   99 (504)
                      +...+..+.+....+...+......|..
T Consensus        24 i~~~~~~l~~rw~~L~~~~~~R~~~Le~   51 (156)
T d1owaa_          24 IQERRQEVLTRYQSFKERVAERGQKLED   51 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444433

>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: STAT
family: STAT
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.87  E-value=4.7  Score=35.39  Aligned_cols=26  Identities=15%  Similarity=0.254  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           50 VMEQKIASQHVEMQKLATENQRLAAT   75 (504)
Q Consensus        50 ~LEqeLe~~~eEIq~Le~e~qrLe~q   75 (504)
                      .|+++|..++..++.++.+++.|+..
T Consensus         8 ei~~~v~~l~~~~q~~e~~ik~Le~~   33 (186)
T d1bg1a1           8 MLEQHLQDVRKRVQDLEQKMKVVENL   33 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555665555555555555544433

>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Apolipoprotein
family: Apolipoprotein
domain: Apolipoprotein E
species: Human (Homo sapiens), E4 [TaxId: 9606]

Probab=89.33  E-value=5  Score=33.18  Aligned_cols=7  Identities=14%  Similarity=0.420  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 010679          219 VEKLRAE  225 (504)
Q Consensus       219 iekLraE  225 (504)
                      ++.|+..
T Consensus       131 ~eel~~k  137 (144)
T d1gs9a_         131 ADDLQKR  137 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=7.2  Score=34.69  Aligned_cols=177  Identities=8%  Similarity=0.028  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV  128 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi~~LkqELa~lqqEL~~L~~~L~~l~ae~E~eL~eL~eki~kLEaEL~ele~L  128 (504)
                      ..+-+-|...-.-++.+......+...+...  -+.-++..+..-...+...+...+.+.+.+...+.+...++..+...
T Consensus        70 ~~ig~~L~~~~~~~~~i~~~~~~l~~~~~~~--~i~PL~~~~~~d~k~i~~~kK~~~k~~k~~~~~l~K~~~~~~k~~kk  147 (248)
T d1y2oa1          70 KELGDVLFQMAEVHRQIQNQLEEMLKSFHNE--LLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKK  147 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010679          129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE--LESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (504)
Q Consensus       129 kaELeqLr~ELqeL~aerqeL~aqvq~L~~ELq~l~~elqql~~L~~E--IeaLrqELq~LR~eLe~~kk~~~el~eqlq  206 (504)
                      ............+.....+.+......+..-+.....+..-...-+-+  ++.|..=++..-.-....-..+.++...++
T Consensus       148 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~eerkr~~~lv~~l~~~~~a~~~~~~q~~~~l~~~~~~~~  227 (248)
T d1y2oa1         148 SQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQ  227 (248)
T ss_dssp             HHTSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010679          207 VMEKNYITMATEVEKLRAELM  227 (504)
Q Consensus       207 emek~L~sme~EiekLraELe  227 (504)
                      ++-.....+-.+.++|..+|+
T Consensus       228 ~~~~~~~~~p~~~~~~~~~~~  248 (248)
T d1y2oa1         228 QACADPSKIPERAVQLMQQVA  248 (248)
T ss_dssp             HHTSCTTCCCHHHHHHHHHTC
T ss_pred             HHHhhHHhCCHHHHHHHHhhC

>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: STAT-like
superfamily: STAT
family: STAT
domain: STAT-1, coiled coil domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.32  E-value=7.4  Score=33.86  Aligned_cols=21  Identities=14%  Similarity=0.376  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010679           72 LAATHGTLRQELAAAQHELQI   92 (504)
Q Consensus        72 Le~qi~~LkqELa~lqqEL~~   92 (504)
                      +...+..++.....+.+++..
T Consensus         7 i~~~v~~l~~~vq~~e~~ik~   27 (181)
T d1bf5a1           7 LDSKVRNVKDKVMCIEHEIKS   27 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333344444333333333333

>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.98  E-value=0.24  Score=53.13  Aligned_cols=27  Identities=15%  Similarity=0.167  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010679           71 RLAATHGTLRQELAAAQHELQILHGQI   97 (504)
Q Consensus        71 rLe~qi~~LkqELa~lqqEL~~L~~~L   97 (504)
                      |.+..+..++.+|..+...+.-++.-+
T Consensus       590 Rk~~~l~~l~~el~~l~~k~rFI~~vi  616 (760)
T d1bjta_         590 RKDHMSERLQWEVEKYSFQVKFIKMII  616 (760)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence            344445555556665555555554443

>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.77  E-value=6  Score=32.18  Aligned_cols=9  Identities=11%  Similarity=0.294  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 010679           49 EVMEQKIAS   57 (504)
Q Consensus        49 ~~LEqeLe~   57 (504)
                      +.|++++..
T Consensus        22 ~~i~~~~~~   30 (156)
T d1owaa_          22 EEIQERRQE   30 (156)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId: 7130]}

class: All alpha proteins
fold: Apolipophorin-III
superfamily: Apolipophorin-III
family: Apolipophorin-III
domain: Apolipophorin-III
species: Manduca sexta [TaxId: 7130]

Probab=87.09  E-value=0.18  Score=44.25  Aligned_cols=13  Identities=23%  Similarity=0.440  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHH
Q 010679          111 LTEKIAKMEAELK  123 (504)
Q Consensus       111 L~eki~kLEaEL~  123 (504)
                      ....+..+-.+|+
T Consensus        79 a~~nle~~Aeelr   91 (166)
T d1eq1a_          79 ARQNVEKTAEELR   91 (166)
T ss_dssp             HHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: STAT
family: STAT
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.21  E-value=9.1  Score=33.41  Aligned_cols=23  Identities=13%  Similarity=0.137  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010679           58 QHVEMQKLATENQRLAATHGTLR   80 (504)
Q Consensus        58 ~~eEIq~Le~e~qrLe~qi~~Lk   80 (504)
                      +..++..|....+.++.++..|+
T Consensus         9 i~~~v~~l~~~~q~~e~~ik~Le   31 (186)
T d1bg1a1           9 LEQHLQDVRKRVQDLEQKMKVVE   31 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444445555544443

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.53  E-value=4.4  Score=31.30  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010679          104 RELQMRNLTEKIAKMEAELKT  124 (504)
Q Consensus       104 ~E~eL~eL~eki~kLEaEL~e  124 (504)
                      .+..+.+..+-|.+|+-|++.
T Consensus        36 ie~~leEA~ell~qMelEvr~   56 (89)
T d1vcsa1          36 VEKQLEEARELLEQMDLEVRE   56 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhHHHHHHHHHHHHHHHHh
Confidence            444555555555555555553

>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=83.98  E-value=7.4  Score=29.69  Aligned_cols=18  Identities=17%  Similarity=0.270  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010679          105 ELQMRNLTEKIAKMEAEL  122 (504)
Q Consensus       105 E~eL~eL~eki~kLEaEL  122 (504)
                      ...+++|..=|...+..+
T Consensus         8 ~~~~~el~~Wl~e~e~~l   25 (110)
T d1u5pa1           8 NTGIKDFDFWLSEVEALL   25 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            344444444454444433

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.56  E-value=17  Score=32.21  Aligned_cols=28  Identities=18%  Similarity=0.216  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010679           49 EVMEQKIASQHVEMQKLATENQRLAATH   76 (504)
Q Consensus        49 ~~LEqeLe~~~eEIq~Le~e~qrLe~qi   76 (504)
                      ..+|.+++.++..|++|......+....
T Consensus        19 ~~~E~~~~~l~~~l~kl~k~~~~~~~~~   46 (268)
T d2elba1          19 GVFEEDATAISNYMNQLYQAMHRIYDAQ   46 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555554444444333