Citrus Sinensis ID: 010712

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500---
Protein Sequence
MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPARR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgskgrippphlrrpppgpgmmhpdpfvsgmrppmpgafppfdmmpppevMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHgqiggmksERELQMRNLTEKIAKMEAELktaepvkleFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELmnapnvdrradgsyggatgnsenetsgrpvgqnayedgygvpqghgpppsattagvvgagpntstsayaatqsgtpmraaydiprgpgyeaskgpgydaskapsydptkgpsydpakgpgydptkgpgydaqkgsnydaqrgpnydihrgpsydpqrglgydmqrgpnydmqrgpgyetqrvpgydvqrgpvyeaqrapsyipqrgpgydlqrgqgydmrrapsydpsrgtgfdgaprgaaphgqvppplnnvpygsatpparsgsgqprggnparr
Flexible Loop (DISEMBL)
mgskgrippphlrrpppgpGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKtaepvklefqksKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRADGSYGgatgnsenetsgrpVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAqrapsyipqrgpgydLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSAtpparsgsgqprggnparr
Low Complexity Region (SEG)
MGSKGRIppphlrrpppgpgmmhpdpFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPARR
Disordered region (IsUnstruct)
****************************************************************************************ELQILHG*********************************************NLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL*****************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
**********************************************************************************************************************************************************************************************************************************MNAPNVDRRADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSA*******TPMRAAYDIP*************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSA*******************
Disordered Region (DISPRO)
******************P*********SGMRPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV*******************************************************************************************************************************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMxxxxxxxxxxxxxxxxxxxxxLKTAEPVKLEFQKSKTEAQNLVVAxxxxxxxxxxxxxxxxxxxxxVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESxxxxxxxxxxxxxxxxxxxxxLMNAPNVDRRADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAAPHGQVPPPLNNVPYGSATPPARSGSGQPRGGNPARR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	503	2.2.26 [Sep-21-2011]
P13821	640	S-antigen protein OS=Plas	N/A	no	0.306	0.240	0.363	9e-20
P13822	76	S-antigen protein (Fragme	N/A	no	0.135	0.894	0.455	3e-07
A2VD00	1424	Eukaryotic translation in	N/A	no	0.345	0.122	0.342	6e-07

>sp|P13821|SANT_PLAFW S-antigen protein OS=Plasmodium falciparum (isolate Wellcome) PE=4 SV=1

 Score = 99.0 bits (245), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 77/154 (50%)

Query: 308 DIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQR 367
           D  +GP  +  KGP  D  K P+ D  KGP+ D  KGP  D  KGP  D  KG N D  +
Sbjct: 94  DGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDK 153

Query: 368 GPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPVYEAQRAPSY 427
           GPN D  +GP+ D  +G   D  +GPN D  +GP  +  + P  D  +GP  +  + P+ 
Sbjct: 154 GPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNS 213

Query: 428 IPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDG 461
              +GP  D  +G   D  + P+ D  +G   DG
Sbjct: 214 DGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDG 247

S antigens are soluble heat-stable proteins present in the sera of some infected individuals.
Plasmodium falciparum (isolate Wellcome) (taxid: 5848)

>sp|P13822|SANT_PLAFP S-antigen protein (Fragment) OS=Plasmodium falciparum (isolate Palo Alto / Uganda) PE=4 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 37/68 (54%)

Query: 313 PGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYD 372
           P  +  KGP  D  K P+ D  KGP+ D  KGP  D  KGP  D  KG N D  +GPN D
Sbjct: 4   PNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSD 63

Query: 373 IHRGPSYD 380
             +GP+ D
Sbjct: 64  GDKGPNSD 71

S antigens are soluble heat-stable proteins present in the sera of some infected individuals.

Plasmodium falciparum (isolate Palo Alto / Uganda) (taxid: 57270)

>sp|A2VD00|EIF3A_XENLA Eukaryotic translation initiation factor 3 subunit A OS=Xenopus laevis GN=eif3a PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 99/225 (44%), Gaps = 51/225 (22%)

Query: 263  DGYGVPQGHGPPP-SATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGP--GYEASK 319
            D   V +G G    +A+  G    GP  S       + G P R   D P GP  G+E  +
Sbjct: 944  DEEQVARGDGDEERAASWRGTDDRGPKRSVE-----EDGGPRRGFNDEP-GPRRGFEDDQ 997

Query: 320  GP--GYDASKAPS--YDPTKGPS--YDPAKGP--GYDPTKGPGYDAQKGSNYDAQRGPNY 371
            GP  G D  + P    D  +GP    D  +GP  G D  +GP    ++G   D  RGP  
Sbjct: 998  GPRRGLDEDRGPRRGLDEDRGPRRGLDEDRGPRRGLDEDRGP----RRG--LDEDRGP-- 1049

Query: 372  DIHRGPSYD--PQRGLGYDMQRGPN--YDMQRGPGYETQRVPGYDVQRGPV--YEAQRAP 425
               RG   D  P+RGL  D  RGP   +D  RGP        G+D  RGP   ++  R P
Sbjct: 1050 --RRGLDEDRGPRRGLDED--RGPRRGFDEDRGPRR------GFDEDRGPRRDFDEDRGP 1099

Query: 426  S--YIPQRGP--GYDLQRG--QGYDMRRAPS--YDPSRG--TGFD 460
               +   RGP  G+D  RG  +G+D  R P   +D  RG   GFD
Sbjct: 1100 RRGFDEDRGPRRGFDEDRGPRRGFDEDRGPRRGFDDDRGPRRGFD 1144

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	503
255581346	467	conserved hypothetical protein [Ricinus	0.886	0.955	0.572	1e-142
224127348	482	predicted protein [Populus trichocarpa]	0.942	0.983	0.563	1e-136
147771156	562	hypothetical protein VITISV_025050 [Viti	0.735	0.658	0.702	1e-135
225451915	421	PREDICTED: uncharacterized protein LOC10	0.735	0.878	0.702	1e-134
449447462	398	PREDICTED: uncharacterized protein LOC10	0.705	0.891	0.624	1e-126
356526605	418	PREDICTED: uncharacterized protein LOC10	0.739	0.889	0.597	1e-121
356567168	404	PREDICTED: uncharacterized protein LOC10	0.673	0.839	0.578	1e-107
297838451	364	hypothetical protein ARALYDRAFT_475814 [	0.624	0.862	0.593	1e-96
30697468	359	uncharacterized protein [Arabidopsis tha	0.624	0.874	0.585	5e-96
4204281	346	Hypothetical protein [Arabidopsis thalia	0.602	0.875	0.583	3e-93

>gi|255581346|ref|XP_002531483.1| conserved hypothetical protein [Ricinus communis] gi|223528910|gb|EEF30907.1| conserved hypothetical protein [Ricinus communis]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 300/524 (57%), Positives = 347/524 (66%), Gaps = 78/524 (14%)

Query: 1   MGSKGRIPPPH-LRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQH 59
           MGSKGRIPPPH LRRP PG G+MHPDPF  G+  P PG FP FDM+PPPEV+EQK+A Q 
Sbjct: 1   MGSKGRIPPPHHLRRPLPGGGIMHPDPFGPGVHGPPPGPFPAFDMLPPPEVLEQKLAGQQ 60

Query: 60  VEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKME 119
           VE+Q+LATENQRLAATH TLRQELAAAQ ELQ+LH  IG +K+ERE QMR L +KIAKME
Sbjct: 61  VEIQRLATENQRLAATHVTLRQELAAAQQELQMLHNDIGVLKAEREQQMRGLMDKIAKME 120

Query: 120 AELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELES 179
            ELK AEPV+ E Q+++TEA+ LVVAR+EL+ KVHQLTQDL RAH DVQQIP L+SEL+S
Sbjct: 121 TELKAAEPVRSELQQARTEAEKLVVARQELMTKVHQLTQDLHRAHADVQQIPILISELDS 180

Query: 180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR--AD 237
           LRQEY  CR +++YEKK ++DH ESLQVME NY+TMA EVEKL  EL N  NVD R    
Sbjct: 181 LRQEYQRCRVSFDYEKKLFSDHRESLQVMENNYVTMAREVEKLHLELTNTSNVDIRTVTG 240

Query: 238 GSYGGATGNSENETSGRPVGQNAYEDGYGV--PQGHGPPP----------SATTAGVVGA 285
           G YGGATGN+ENETS R VG+N YED YGV   QGH P P          + + +    A
Sbjct: 241 GPYGGATGNNENETSSRSVGENKYEDSYGVSQSQGHTPIPGNSGSAAATAAGSASTGAKA 300

Query: 286 GPNTSTSAYAATQSGT-PMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKG 344
           G    T  Y   QSG+   R+AYD PRGP YEA+KGP YD S                +G
Sbjct: 301 GTGAGTPTYTGAQSGSASTRSAYDTPRGPNYEATKGPSYDVS----------------RG 344

Query: 345 PGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYE 404
            GYD ++G  YDAQ+G +YDAQRGP Y++ RGPSYD Q       QR P YD+QR PGY 
Sbjct: 345 SGYDLSRGAAYDAQRGHSYDAQRGPGYNMQRGPSYDAQ-------QRVPGYDVQRIPGY- 396

Query: 405 TQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPR 464
             R PGYDVQ+GP Y+A                                SR  G+D A R
Sbjct: 397 APRTPGYDVQQGPHYDA--------------------------------SRVAGYDPAAR 424

Query: 465 GAA--PHGQVPPPLNNVPYGSATPPARSGSG---QPRGGNPARR 503
           G A  PHGQ+ P  NNVPYGSATP  R+ SG   Q RGGNP RR
Sbjct: 425 GTAVPPHGQMTPA-NNVPYGSATPSTRAVSGYEAQARGGNPVRR 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127348|ref|XP_002329255.1| predicted protein [Populus trichocarpa] gi|222870709|gb|EEF07840.1| predicted protein [Populus trichocarpa]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 288/511 (56%), Positives = 342/511 (66%), Gaps = 37/511 (7%)

Query: 1   MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHV 60
           M SKGRIPPPHLRRP PG G++HPD F SG+R P  G FPPF+M+PPPEVMEQKIA+QH 
Sbjct: 1   MASKGRIPPPHLRRPLPGSGIVHPDSFGSGLRLPQ-GPFPPFEMLPPPEVMEQKIAAQHG 59

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           EMQ+LATENQRLAATHGTLRQELAAAQHELQ+LH  IG +K+ERE QMR L + I KME 
Sbjct: 60  EMQRLATENQRLAATHGTLRQELAAAQHELQLLHAHIGAVKAEREQQMRVLVDNIGKMET 119

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           ELK AEPV+LE Q+++ EA+NL+V R+EL++K+HQL+QDL RA  DVQQIPAL+SELE L
Sbjct: 120 ELKDAEPVRLELQQARVEAENLLVTRQELVSKIHQLSQDLHRAQVDVQQIPALMSELEGL 179

Query: 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRADGSY 240
           RQEY  CR +Y+YEKK ++DHLE LQ MEKNYITM+ E+EKLR+EL    NVD R  G Y
Sbjct: 180 RQEYQRCRVSYDYEKKLFHDHLEQLQTMEKNYITMSRELEKLRSELTKTANVDIRNGGPY 239

Query: 241 GGATGNSENETSGRPVGQNAYEDGYGVPQGHGPP----PSATTAGVVGAGPNTSTSAYAA 296
           GG  GN E+E SG P G+N YEDGYG+PQ  G P      A   G VG     + + YA 
Sbjct: 240 GGPAGN-ESEASGHPAGKNIYEDGYGIPQSQGHPALHNSGAANIGAVGNASAGTATPYAG 298

Query: 297 TQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYD 356
            QSG         P  PGYEA +GP Y+  K P YD ++ P YD  +G GYD  +GPGYD
Sbjct: 299 AQSGA-------APSKPGYEAPRGPAYEPPKVPGYDASRLPGYDMQRGHGYDAQRGPGYD 351

Query: 357 AQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRG 416
           AQ+   YD QR   YDI RG +YD QRG GYD QR PNY   RG GY+     G    +G
Sbjct: 352 AQRVPGYDPQRLAGYDIQRGHAYDAQRGQGYDAQRLPNYHASRGAGYDAAASRGAAGPQG 411

Query: 417 PVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGAA-PHGQVPPP 475
            V     AP       P  ++     Y     P++    G+G++   RG A PHGQ+   
Sbjct: 412 HV-----AP-------PANNMP----YGSATPPTHS---GSGYEAPARGVAGPHGQMAAG 452

Query: 476 LNNVPYGSATPPARSGS---GQPRGGNPARR 503
            NN+PYGSATPP RSGS      R  NPARR
Sbjct: 453 -NNMPYGSATPPTRSGSVYEASARAPNPARR 482

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771156|emb|CAN65241.1| hypothetical protein VITISV_025050 [Vitis vinifera]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/377 (70%), Positives = 298/377 (79%), Gaps = 7/377 (1%)

Query: 1   MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHV 60
           MGSKGRIPP HLRRP PGPG+MHPD FV G+RPP  G F PFDM+PPPEVMEQK+A+QHV
Sbjct: 1   MGSKGRIPP-HLRRPLPGPGLMHPDSFVPGIRPPH-GVFSPFDMLPPPEVMEQKLAAQHV 58

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           +MQ+LA ENQRLAATHGTLRQELAAAQHELQ+L  QIG MKSERE +MR+LT+KIAKMEA
Sbjct: 59  DMQRLANENQRLAATHGTLRQELAAAQHELQMLQAQIGVMKSEREQRMRSLTDKIAKMEA 118

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           ELK AEPVKLE Q+++ +AQ+LV AR+ELI+KV QLTQDLQR+H+DVQQIPAL++ELESL
Sbjct: 119 ELKAAEPVKLELQQARADAQSLVAARQELISKVQQLTQDLQRSHSDVQQIPALMAELESL 178

Query: 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRADGSY 240
           RQEY HCR TY+YEKK YNDHLESLQVMEKNY+TMA EVEKLRAEL N  N+DRR  G Y
Sbjct: 179 RQEYQHCRATYDYEKKLYNDHLESLQVMEKNYMTMAREVEKLRAELTNTANMDRRTGGPY 238

Query: 241 GGATGNSENETSG-RPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAAT-- 297
           GG TG +E E SG  P+G NAYEDGYGVPQG  P P AT  GV  AG         A   
Sbjct: 239 GGPTGYNEGEASGHHPIGHNAYEDGYGVPQGRAPLPGATGGGVAAAGGGGGGGGTPAYAG 298

Query: 298 -QSG-TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGY 355
            QSG    R  YD PRGPGY+A +GPGYDA + P YDP +GP YD  KGPGYD  +GP Y
Sbjct: 299 PQSGPAASRPGYDGPRGPGYDAPRGPGYDAPRGPGYDPQRGPGYDAQKGPGYDAQRGPAY 358

Query: 356 DAQKGSNYDAQRGPNYD 372
           D Q+G  YDA RG NYD
Sbjct: 359 DGQRGPVYDAPRGTNYD 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451915|ref|XP_002282805.1| PREDICTED: uncharacterized protein LOC100244706 [Vitis vinifera] gi|298204399|emb|CBI16879.3| unnamed protein product [Vitis vinifera]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/377 (70%), Positives = 298/377 (79%), Gaps = 7/377 (1%)

Query: 1   MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHV 60
           MGSKGRIPP HLRRP PGPG+MHPD FV G+RPP  G F PFDM+PPPEVMEQK+A+QHV
Sbjct: 1   MGSKGRIPP-HLRRPLPGPGLMHPDSFVPGIRPPH-GVFSPFDMLPPPEVMEQKLAAQHV 58

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           +MQ+LA ENQRLAATHGTLRQELAAAQHELQ+L  QIG MKSERE +MR+LT+KIAKMEA
Sbjct: 59  DMQRLANENQRLAATHGTLRQELAAAQHELQMLQAQIGVMKSEREQRMRSLTDKIAKMEA 118

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           ELK AEPVKLE Q+++ +AQ+LV AR+ELI+KV QLTQDLQR+H+DVQQIPAL++ELESL
Sbjct: 119 ELKAAEPVKLELQQARADAQSLVAARQELISKVQQLTQDLQRSHSDVQQIPALMAELESL 178

Query: 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRADGSY 240
           RQEY HCR TY+YEKK YNDHLESLQVMEKNY+TMA EVEKLRAEL N  N+DRR  G Y
Sbjct: 179 RQEYQHCRATYDYEKKLYNDHLESLQVMEKNYMTMAREVEKLRAELTNTANMDRRTGGPY 238

Query: 241 GGATGNSENETSG-RPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAAT-- 297
           GG TG +E E SG  P+G NAYEDGYGVPQG  P P AT  GV  AG         A   
Sbjct: 239 GGPTGYNEGEASGHHPIGHNAYEDGYGVPQGRAPLPGATGGGVAAAGGGGGGGGTPAYAG 298

Query: 298 -QSG-TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGY 355
            QSG    R  YD PRGPGY+A +GPGYDA + P YDP +GP YD  KGPGYD  +GP Y
Sbjct: 299 PQSGPAASRPGYDGPRGPGYDAPRGPGYDAPRGPGYDPQRGPGYDAQKGPGYDAQRGPAY 358

Query: 356 DAQKGSNYDAQRGPNYD 372
           D Q+G  YDA RG NYD
Sbjct: 359 DGQRGPVYDAPRGTNYD 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447462|ref|XP_004141487.1| PREDICTED: uncharacterized protein LOC101210432 [Cucumis sativus] gi|449481420|ref|XP_004156177.1| PREDICTED: uncharacterized protein LOC101226645 [Cucumis sativus]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/391 (62%), Positives = 283/391 (72%), Gaps = 36/391 (9%)

Query: 1   MGSKGRIPPPHLRRPPPGPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQHV 60
           MGSKGRIPP H RR   G G++HP+ F   +RPP PGAFPPFDM+PPPEVMEQK+A QHV
Sbjct: 1   MGSKGRIPPSHGRRTLQGSGVLHPEAFGHALRPP-PGAFPPFDMLPPPEVMEQKLAGQHV 59

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           E+QKLATENQRLAATHGTLRQELAAAQHELQILH QIG +KSERE Q RNL++KIAKMEA
Sbjct: 60  EIQKLATENQRLAATHGTLRQELAAAQHELQILHAQIGAVKSEREQQARNLSDKIAKMEA 119

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           ELK +EP+KLE Q++K++AQNL+VAR+ELI++V  LTQDLQRAH DVQQ+P L+SELESL
Sbjct: 120 ELKASEPIKLELQQAKSDAQNLIVARQELISRVQHLTQDLQRAHGDVQQVPVLMSELESL 179

Query: 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRADGSY 240
           RQEY HCR TY+YEKK YNDHLESLQVMEKNYITMA E+EKLRAEL N  +++RR  G Y
Sbjct: 180 RQEYQHCRATYDYEKKLYNDHLESLQVMEKNYITMARELEKLRAELTNTSSLERRHGGPY 239

Query: 241 GGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSG 300
            G T N+E E SG   GQN YEDGYGV QG GP P AT  G   AG    T+AY   Q+G
Sbjct: 240 -GTTPNNEIEASGNAAGQNTYEDGYGVAQGRGPLP-ATAGGASSAG----TTAYTGPQTG 293

Query: 301 -TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQK 359
            T  R  +D  RGP     +GPGYD  +   YD  +                 PGYD Q+
Sbjct: 294 STANRPNFDATRGP----QRGPGYDGGRGSIYDSQR-----------------PGYDGQR 332

Query: 360 GSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQ 390
           G       GP Y++   P+YD  RG+GYD Q
Sbjct: 333 G-------GPGYNVPGLPTYDASRGVGYDPQ 356

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526605|ref|XP_003531907.1| PREDICTED: uncharacterized protein LOC100802139 [Glycine max]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/393 (59%), Positives = 277/393 (70%), Gaps = 21/393 (5%)

Query: 1   MGSKGRIPPPHLRRPPP--GPGMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVMEQKIASQ 58
           MGSKGR+PPP   R P   GP  M P P              PFD++PPP+VMEQK+ASQ
Sbjct: 1   MGSKGRMPPPPHLRRPHPPGPAAM-PHPLAG-----------PFDLLPPPQVMEQKLASQ 48

Query: 59  HVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKM 118
           H EMQ+LATENQRLAATHG LRQELAAAQHELQ+LH  +  +K ERE Q+R   EKI+KM
Sbjct: 49  HAEMQRLATENQRLAATHGVLRQELAAAQHELQMLHAHVSALKGEREQQIRVQLEKISKM 108

Query: 119 EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELE 178
           EAE K AE VK+E Q+++ EAQNLVV+R+EL++K   LTQ+LQR H D  QIPAL+SELE
Sbjct: 109 EAEAKGAESVKMELQQARGEAQNLVVSRDELVSKAQHLTQELQRVHADAVQIPALISELE 168

Query: 179 SLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRADG 238
            LRQEY HCR T++YEKK YNDHLESLQVMEKNY++M+ EVEKLRAEL N  NVDRR+ G
Sbjct: 169 CLRQEYQHCRATFDYEKKLYNDHLESLQVMEKNYVSMSREVEKLRAELTNTANVDRRSSG 228

Query: 239 SYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQ 298
            YGG +G +ENE SG PVGQNAYEDGY   QG GP P+A+     G G N +T   A  Q
Sbjct: 229 PYGGTSGTNENEASGLPVGQNAYEDGYSFMQGRGPLPAAS-----GGGGNATTLITAGGQ 283

Query: 299 SG-TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDA 357
            G  P    YD PRGPGY AS GP YDA +  +YD  +   YD  +G  YD  +GP +DA
Sbjct: 284 PGPAPAGTGYDAPRGPGYGASAGPAYDAQRVATYDAQRLTGYDAFRGSAYDSKRGPIFDA 343

Query: 358 QKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQ 390
           Q+ + YD QRGP YD+ RGP+YD  R  GYD Q
Sbjct: 344 QR-TGYDPQRGPGYDMQRGPAYDAPRADGYDAQ 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567168|ref|XP_003551793.1| PREDICTED: uncharacterized protein LOC100783811 [Glycine max]

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/356 (57%), Positives = 250/356 (70%), Gaps = 17/356 (4%)

Query: 36  PGAFP-----PFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHEL 90
           P A P     PFD +PPP+VMEQK+ASQH EMQ+L+TENQRLAATH  LRQELAAAQHE+
Sbjct: 21  PAAMPHPLVVPFDFLPPPQVMEQKLASQHAEMQRLSTENQRLAATHSVLRQELAAAQHEM 80

Query: 91  QILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELI 150
           Q+LHG +  +K ERE Q+R   EKIAKME+E + +E VK+E Q+++ EAQNLVV+R+EL+
Sbjct: 81  QMLHGHVVALKGEREQQIRAQMEKIAKMESEAQGSESVKMELQQARGEAQNLVVSRDELV 140

Query: 151 AKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK 210
           +K   LTQ+LQR H D  QIPAL+SE E LRQEY HCR T++YEK  YNDHLESLQVMEK
Sbjct: 141 SKAQHLTQELQRVHADAVQIPALISEFECLRQEYQHCRATFDYEKNLYNDHLESLQVMEK 200

Query: 211 NYITMATEVEKLRAELMNAPNVDRRADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQG 270
           NY++M+ EVEKLRAEL N  NVDRR+ G YGG +G +ENE SG PVGQNAYEDGY V QG
Sbjct: 201 NYVSMSREVEKLRAELTNTANVDRRSSGPYGGTSGTNENEASGLPVGQNAYEDGYSVMQG 260

Query: 271 HGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPS 330
            GP P+A  +G   A   T       T  G P  A    P G GY+A  GPGY AS   +
Sbjct: 261 RGPLPAAAGSGGGNATTIT-------TAGGQPGPA----PAGTGYDAPIGPGYGASTGST 309

Query: 331 YDPTKGPSYDPAKGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQ-RGL 385
           YD  +G +YD  +  G +  +G  YD+++GS YD QR P YD  R   YD Q RG+
Sbjct: 310 YDAQRGATYDTQRLTGSNAFRGSAYDSKRGSGYDMQRAPAYDAPRAAGYDAQSRGV 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838451|ref|XP_002887107.1| hypothetical protein ARALYDRAFT_475814 [Arabidopsis lyrata subsp. lyrata] gi|297332948|gb|EFH63366.1| hypothetical protein ARALYDRAFT_475814 [Arabidopsis lyrata subsp. lyrata]

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 206/347 (59%), Positives = 245/347 (70%), Gaps = 33/347 (9%)

Query: 1   MGSKGRIPPPH--LRRPPPGPG--MMHPDPFVSGMRPP---MPGAFPPFDMMPPPEVMEQ 53
           M SKGRI P H  +RRP PGPG  + HP+ F S    P     GA+P F+M+PPPEVMEQ
Sbjct: 1   MESKGRIHPSHHHMRRPLPGPGGGIAHPETFGSHAAIPPSAAQGAYPSFNMLPPPEVMEQ 60

Query: 54  KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTE 113
           K A+QH E+Q+LA ENQRL ATHG+LRQELAAAQHELQ+LH QIG MKSERE +M  L E
Sbjct: 61  KFAAQHGELQRLAIENQRLGATHGSLRQELAAAQHELQMLHSQIGSMKSEREQRMMGLAE 120

Query: 114 KIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL 173
           K+AKME EL+ +E VKLE Q+++ EA++LVVAREEL++KVHQLTQ+LQ+A +DVQQIPAL
Sbjct: 121 KVAKMETELQKSEAVKLEMQQARAEARSLVVAREELMSKVHQLTQELQKARSDVQQIPAL 180

Query: 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233
           +SELE+LRQEY  CR TY+YEKKFYNDHLESLQ MEKNY+TMA EVEKL+A+LMN+ N D
Sbjct: 181 MSELENLRQEYQQCRATYDYEKKFYNDHLESLQAMEKNYMTMAREVEKLQAQLMNSANSD 240

Query: 234 RRADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSA 293
           RRA   Y G+  N+E + SG   G   YED +G PQG+ P   A  A    AGPN+   A
Sbjct: 241 RRAGVPY-GSNMNAEIDASGHQSGNGYYEDAFG-PQGYIPQSVAGNA----AGPNSIVGA 294

Query: 294 Y-----AATQSG-TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 334
                   TQ G  P R  Y+ PRGP       PG       SYDPT
Sbjct: 295 AQYPYPGVTQPGYFPPRPGYNFPRGP-------PG-------SYDPT 327

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697468|ref|NP_176888.2| uncharacterized protein [Arabidopsis thaliana] gi|29028878|gb|AAO64818.1| At1g67170 [Arabidopsis thaliana] gi|110736466|dbj|BAF00201.1| hypothetical protein [Arabidopsis thaliana] gi|332196487|gb|AEE34608.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 203/347 (58%), Positives = 243/347 (70%), Gaps = 33/347 (9%)

Query: 1   MGSKGRIPPPH--LRRPPPGPG--MMHPDPFVS-GMRPPMP--GAFPPFDMMPPPEVMEQ 53
           M SKGRI P H  +RRP PGPG  + HP+ F + G  PP    G +P F+M+PPPEVMEQ
Sbjct: 1   MESKGRIHPSHHHMRRPLPGPGGCIAHPETFGNHGAIPPSAAQGVYPSFNMLPPPEVMEQ 60

Query: 54  KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTE 113
           K  +QH E+Q+LA ENQRL  THG+LRQELAAAQHE+Q+LH QIG MKSERE +M  L E
Sbjct: 61  KFVAQHGELQRLAIENQRLGGTHGSLRQELAAAQHEIQMLHAQIGSMKSEREQRMMGLAE 120

Query: 114 KIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL 173
           K+AKME EL+ +E VKLE Q+++ EA++LVVAREEL++KVHQLTQ+LQ++ +DVQQIPAL
Sbjct: 121 KVAKMETELQKSEAVKLEMQQARAEARSLVVAREELMSKVHQLTQELQKSRSDVQQIPAL 180

Query: 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233
           +SELE+LRQEY  CR TY+YEKKFYNDHLESLQ MEKNY+TMA EVEKL+A+LMN  N D
Sbjct: 181 MSELENLRQEYQQCRATYDYEKKFYNDHLESLQAMEKNYMTMAREVEKLQAQLMNNANSD 240

Query: 234 RRADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSA 293
           RRA G YG    N+E + SG   G   YED +G PQG+ P P A  A     GPN+   A
Sbjct: 241 RRAGGPYGNNI-NAEIDASGHQSGNGYYEDAFG-PQGYIPQPVAGNA----TGPNSVVGA 294

Query: 294 -----YAATQSG-TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 334
                   TQ G  P R  Y+ PRGP       PG       SYDPT
Sbjct: 295 AQYPYQGVTQPGYFPQRPGYNFPRGP-------PG-------SYDPT 327

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4204281|gb|AAD10662.1| Hypothetical protein [Arabidopsis thaliana]

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 195/334 (58%), Positives = 235/334 (70%), Gaps = 31/334 (9%)

Query: 12  LRRPPPGPG--MMHPDPFVS-GMRPPMP--GAFPPFDMMPPPEVMEQKIASQHVEMQKLA 66
           +RRP PGPG  + HP+ F + G  PP    G +P F+M+PPPEVMEQK  +QH E+Q+LA
Sbjct: 1   MRRPLPGPGGCIAHPETFGNHGAIPPSAAQGVYPSFNMLPPPEVMEQKFVAQHGELQRLA 60

Query: 67  TENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE 126
            ENQRL  THG+LRQELAAAQHE+Q+LH QIG MKSERE +M  L EK+AKME EL+ +E
Sbjct: 61  IENQRLGGTHGSLRQELAAAQHEIQMLHAQIGSMKSEREQRMMGLAEKVAKMETELQKSE 120

Query: 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHH 186
            VKLE Q+++ EA++LVVAREEL++KVHQLTQ+LQ++ +DVQQIPAL+SELE+LRQEY  
Sbjct: 121 AVKLEMQQARAEARSLVVAREELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQ 180

Query: 187 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRADGSYGGATGN 246
           CR TY+YEKKFYNDHLESLQ MEKNY+TMA EVEKL+A+LMN  N DRRA G YG    N
Sbjct: 181 CRATYDYEKKFYNDHLESLQAMEKNYMTMAREVEKLQAQLMNNANSDRRAGGPYGNNI-N 239

Query: 247 SENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTSTSA-----YAATQSG- 300
           +E + SG   G   YED +G PQG+ P P A  A     GPN+   A        TQ G 
Sbjct: 240 AEIDASGHQSGNGYYEDAFG-PQGYIPQPVAGNA----TGPNSVVGAAQYPYQGVTQPGY 294

Query: 301 TPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPT 334
            P R  Y+ PRGP       PG       SYDPT
Sbjct: 295 FPQRPGYNFPRGP-------PG-------SYDPT 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	503
TAIR|locus:2033681	359	AT1G67170 "AT1G67170" [Arabido	0.624	0.874	0.569	1.4e-87
TAIR|locus:2089616	331	AT3G14750 "AT3G14750" [Arabido	0.463	0.703	0.386	1.4e-39
TAIR|locus:2035751	283	AT1G55170 "AT1G55170" [Arabido	0.453	0.805	0.362	1.6e-31
TAIR|locus:2156146	238	AT5G61920 "AT5G61920" [Arabido	0.363	0.768	0.349	2.2e-25
FB|FBgn0085362	578	Vml "Vitelline membrane-like"	0.530	0.461	0.293	2e-22
TAIR|locus:2060848	288	AT2G30120 [Arabidopsis thalian	0.457	0.798	0.290	5.7e-18
UNIPROTKB|A2VD00	1424	eif3a "Eukaryotic translation	0.779	0.275	0.264	1.2e-11
UNIPROTKB|A4II09	1391	eif3a "Eukaryotic translation	0.367	0.132	0.303	1.3e-14
UNIPROTKB|F1S187	406	LOC100518332 "Uncharacterized	0.413	0.512	0.312	3.1e-13
UNIPROTKB|P11414	467	POLR2A "DNA-directed RNA polym	0.475	0.511	0.292	3.6e-11

TAIR|locus:2033681 AT1G67170 "AT1G67170" [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 189/332 (56%), Positives = 229/332 (68%)

Query:    30 GMRPPMP--GAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQ 87
             G  PP    G +P F+M+PPPEVMEQK  +QH E+Q+LA ENQRL  THG+LRQELAAAQ
Sbjct:    35 GAIPPSAAQGVYPSFNMLPPPEVMEQKFVAQHGELQRLAIENQRLGGTHGSLRQELAAAQ 94

Query:    88 HELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVARE 147
             HE+Q+LH QIG MKSERE +M  L EK+AKME EL+ +E VKLE Q+++ EA++LVVARE
Sbjct:    95 HEIQMLHAQIGSMKSEREQRMMGLAEKVAKMETELQKSEAVKLEMQQARAEARSLVVARE 154

Query:   148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207
             EL++KVHQLTQ+LQ++ +DVQQIPAL+SELE+LRQEY  CR TY+YEKKFYNDHLESLQ 
Sbjct:   155 ELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFYNDHLESLQA 214

Query:   208 MEKNYITMATEVEKLRAELMNAPNVDRRADGSYGGATGNSENETSGRPVGQNAYEDGYGV 267
             MEKNY+TMA EVEKL+A+LMN  N DRRA G YG    N+E + SG   G   YED +G 
Sbjct:   215 MEKNYMTMAREVEKLQAQLMNNANSDRRAGGPYGNNI-NAEIDASGHQSGNGYYEDAFG- 272

Query:   268 PQGHGPPPSATTAGVVGAGPNTSTSA--Y---AATQSGT-PMRAAYDIPRGPGYEASKGP 321
             PQG+ P P A  A     GPN+   A  Y     TQ G  P R  Y+ PRGP    S  P
Sbjct:   273 PQGYIPQPVAGNA----TGPNSVVGAAQYPYQGVTQPGYFPQRPGYNFPRGP--PGSYDP 326

Query:   322 GYDASKAPSYDP-TKGPSYD-PAKGPGYDPTK 351
                    P   P   GPS + P  G   +P++
Sbjct:   327 TTRLPTGPYGAPFPPGPSNNTPYAGTHGNPSR 358

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089616 AT3G14750 "AT3G14750" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 99/256 (38%), Positives = 149/256 (58%)

Query:    45 MPPP-EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQ-ILHGQIGGMKS 102
             +PP   ++E ++A+Q+ ++Q L  +NQRLAATH  L+QEL  AQHELQ I+H  I  +++
Sbjct:    63 LPPQFSILEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMH-YIDSLRA 121

Query:   103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162
             E E+ MR + +K  + E EL+  + ++ E QK + + +     R+EL ++VH +TQDL R
Sbjct:   122 EEEIMMREMYDKSMRSEMELREVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLAR 181

Query:   163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222
                D+QQIP L +E+E+ +QE    R   +YEKK Y ++ E  ++ME   + MA E+EKL
Sbjct:   182 LTADLQQIPTLTAEIENTKQELQRARAAIDYEKKGYAENYEHGKIMEHKLVAMARELEKL 241

Query:   223 RAELMNAPNVDRRADG--------SYGGATGNSENETSGRPVGQNAYEDGYGV-PQ---- 269
             RAE+ N+      A+G        +YGG  GN E   +G PV  N Y+  Y + P     
Sbjct:   242 RAEIANS-ETSAYANGPVGNPGGVAYGGGYGNPE---AGYPV--NPYQPNYTMNPAQTGV 295

Query:   270 -GHGPPPSATTAGVVG 284
              G+ PPP    A   G
Sbjct:   296 VGYYPPPYGPQAAWAG 311

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2035751 AT1G55170 "AT1G55170" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 87/240 (36%), Positives = 131/240 (54%)

Query:    32 RPPMPGAFPPFDMMPPPEVMEQ------KIASQHVEMQKLATENQRLAATHGTLRQELAA 85
             RP + G  PP    PPP ++E       +I  Q  E+++L ++N  LA     L +EL A
Sbjct:    25 RPFLRG--PPLLQPPPPSLLEDLQIQEGEIRRQDAEIRRLLSDNHGLADDRMVLERELVA 82

Query:    86 AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVA 145
             A+ EL  ++  I  +++E++LQ+R  +EK  K+E +++  E  K E  + + E Q L   
Sbjct:    83 AKEELHRMNLMISDLRAEQDLQLREFSEKRHKLEGDVRAMESYKKEASQLRGEVQKLDEI 142

Query:   146 REELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL 205
             + EL   V  L +DL +  +D +QIP + +E++ L++E  H R   EYEKK   + +E  
Sbjct:   143 KRELSGNVQLLRKDLAKLQSDNKQIPGMRAEVKDLQKELMHARDAIEYEKKEKFELMEQR 202

Query:   206 QVMEKNYITMATEVEKLRAELMNAPNVDRRADGSYGGATGNSENETSGRPVGQNAYEDGY 265
             Q MEKN ++MA EVEKLRAEL     VD R  G +GG+ G + N   G   G     D Y
Sbjct:   203 QTMEKNMVSMAREVEKLRAELAT---VDSRPWG-FGGSYGMNYNNMDGTFRGSYGENDTY 258

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2156146 AT5G61920 "AT5G61920" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 64/183 (34%), Positives = 107/183 (58%)

Query:    49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
             +++E KIA Q  E+ +L+ +N++LA+++  L+++L  A  E+Q L   I   +++ E+Q+
Sbjct:    51 DILENKIAVQAAEIDRLSNDNRKLASSYVALKEDLTVADREVQGLRAHIRKTETDHEIQI 110

Query:   109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
             R+  EKIAKME  +K  E ++ E Q +  EA  L   REEL +KV    +DL++   + +
Sbjct:   111 RSTLEKIAKMEGMVKNRENIRREVQSAHIEAHRLAREREELASKVKLGMKDLKKVCLEAE 170

Query:   169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228
              + A   ELE L++E+   R  +E EK    + L  L+ ME+  I     +EKLR+E+  
Sbjct:   171 SLEASSQELERLKEEHQRLRKEFEEEKSGNVEKLAQLKGMERKIIGAVKAIEKLRSEIST 230

Query:   229 APN 231
             A N
Sbjct:   231 ARN 233

GO:0008150 "biological_process" evidence=ND

FB|FBgn0085362 Vml "Vitelline membrane-like" [Drosophila melanogaster (taxid:7227)]

 Score = 286 (105.7 bits), Expect = 2.0e-22, P = 2.0e-22
 Identities = 83/283 (29%), Positives = 99/283 (34%)

Query:   229 APNVDRRADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQG---HGPPPSATTAGVVGA 285
             AP+    A  SY      S +  S  P         Y  P     H P   A++     A
Sbjct:   198 APSYSAPAAPSYSAPAAPSYSAPSA-PSYSAQKTSSYSAPAAPSYHAPAAPASSYSAP-A 255

Query:   286 GPNTSTSA---YAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPA 342
             GP+ S  A   Y+A     P  ++Y   + P Y A   P Y A  APSY  +  PSY   
Sbjct:   256 GPSYSAPAAPSYSAPSYSAPA-SSYSALKAPSYSAPAAPSYSAPAAPSYSSSASPSYSSP 314

Query:   343 KGPGYDPTKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPG 402
                 Y     P Y A K  +Y A   P+Y     PSY       Y     P+Y     P 
Sbjct:   315 ASSSYSAPAAPTYSAPKAQSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPS 374

Query:   403 YETQRVPGYDVQRGPVYEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGA 462
             Y     P Y       Y A  APSY     P Y       Y    APSY       +  A
Sbjct:   375 YSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYS-A 433

Query:   463 PRGAAPHGQVPP-PLNNVPYGSATPPARS---GSGQPRGGNPA 501
             P  AAP    P  P  + P  S    AR+   GS  P  G  A
Sbjct:   434 P--AAPSYSAPAAPSYSAPASSGYSAARAYSAGSAAPASGYSA 474

GO:0009950 "dorsal/ventral axis specification" evidence=IGI

GO:0060388 "vitelline envelope" evidence=IDA

GO:0007305 "vitelline membrane formation involved in chorion-containing eggshell formation" evidence=ISM

GO:0008316 "structural constituent of vitelline membrane" evidence=ISM

GO:0035805 "egg coat" evidence=ISM

TAIR|locus:2060848 AT2G30120 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 5.7e-18, P = 5.7e-18
 Identities = 68/234 (29%), Positives = 113/234 (48%)

Query:    50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMR 109
             ++E +IA QH E+Q L  +NQRLA  H  L+ +L  A+ EL+ L      +K+E E ++R
Sbjct:    38 ILEDRIAIQHREIQSLLNDNQRLAVAHIGLKDQLNVAKRELERLLETAVKVKAEGEAKVR 97

Query:   110 NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ 169
              + +   +MEAE +  + +  E  + +++ Q L   R+EL  ++     ++ +A  +  +
Sbjct:    98 EVYQNALRMEAEARVIDGLGAELGQVRSDVQRLGSDRQELATELAMFDDEMAKAKPNSDR 157

Query:   170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229
                +  E+E LR E    R   E EKK    +L   + MEK    +  E+ KL  EL++ 
Sbjct:   158 AIEVKLEIEILRGEIRKGRAALELEKKTRASNLHHERGMEKTIDHLNREIVKLEEELVDL 217

Query:   230 PNVDRRADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVV 283
                 R A+ +   A   S    +    G N  +D YG  QG   P +  T  +V
Sbjct:   218 ETKAREANAAAEAAPTPSPGLAAS--YGNNT-DDIYG-GQGRQYPEANGTHELV 267

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|A2VD00 eif3a "Eukaryotic translation initiation factor 3 subunit A" [Xenopus laevis (taxid:8355)]

 Score = 195 (73.7 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 120/453 (26%), Positives = 179/453 (39%)

Query:    50 VMEQKIASQHVEMQKLATENQRLAATHGT-LRQELAAAQHELQILHGQIGGMKSER--EL 106
             V   K + Q V   KL    +RLA      L +     + E +I + +    + +R  E 
Sbjct:   761 VSNLKASRQSVYDAKLKQFQERLAEEKRVRLEERKRQRKEERRISYYRDKEEEEQRLIEE 820

Query:   107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166
             Q++   E   K+E E + AE  + + +  K E Q       EL  +  +  +D +R   D
Sbjct:   821 QLKQEREDREKIENEKREAEQREYQERLKKLEEQERKKRLRELEIEEREKKRDEERRGPD 880

Query:   167 ----VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222
                  Q  P+   +    R+E    RG    E+K      +     + +      + E  
Sbjct:   881 DSFRKQDTPSRWGD----REESGWRRGADPDERKQAPPERDWRSGGQDSKPVKDEDREGD 936

Query:   223 RAELMNAPNVD-RRADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAG 281
                ++        R DG    A   S   T  R   ++  EDG G  +G    P      
Sbjct:   937 EDSVLRKDEEQVARGDGDEERAA--SWRGTDDRGPKRSVEEDG-GPRRGFNDEPGPRRGF 993

Query:   282 VVGAGPNTSTSAYAATQSGTPMRAAYDIPRGP--GYEASKGP--GYDASKAP--SYDPTK 335
                 GP          +   P R   D  RGP  G +  +GP  G D  + P    D  +
Sbjct:   994 EDDQGPRRGLD-----EDRGPRRGL-DEDRGPRRGLDEDRGPRRGLDEDRGPRRGLDEDR 1047

Query:   336 GP--SYDPAKGP--GYDPTKGP--GYDAQKGSN--YDAQRGP--NYDIHRGPSYDPQRGL 385
             GP    D  +GP  G D  +GP  G+D  +G    +D  RGP  ++D  RGP    +RG 
Sbjct:  1048 GPRRGLDEDRGPRRGLDEDRGPRRGFDEDRGPRRGFDEDRGPRRDFDEDRGP----RRG- 1102

Query:   386 GYDMQRGPN--YDMQRGP--GYETQRVP--GYDVQRGPV--YEAQRAP--SYIPQRGP-- 433
              +D  RGP   +D  RGP  G++  R P  G+D  RGP   ++  R P   +   RGP  
Sbjct:  1103 -FDEDRGPRRGFDEDRGPRRGFDEDRGPRRGFDDDRGPRRGFDDDRGPRRGFEDDRGPRR 1161

Query:   434 GYDLQRG--QGYDMRRAPSYDPSRGTGFDGAPR 464
             G++  RG  +G++  R P     RG   D  PR
Sbjct:  1162 GFEDDRGPRRGFEDDRGPR----RGFDEDRTPR 1190

GO:0001732 "formation of translation initiation complex" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|A4II09 eif3a "Eukaryotic translation initiation factor 3 subunit A" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 186 (70.5 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 68/224 (30%), Positives = 101/224 (45%)

Query:   266 GVPQGHGPPPSATTAGVVGAGPNTSTSAYAATQSGTPMRAAYDIPRGP--GYEASKGP-- 321
             G+ +  GP      AG    G           +     R  +D  RGP  G++  +GP  
Sbjct:   981 GLEEDRGPRRGIDDAGP-RRGFEEDRGPRRGIEDDRAPRRGFDDDRGPRRGFDDDRGPRR 1039

Query:   322 GYDASKAP--SYDPTKGP--SYDPAKGP--GYDPTKGP--GYDAQKGSN--YDAQRGPN- 370
             G+D  + P    D  +GP   +D  + P  G+D  +GP  G+D  +G    +D  RGP  
Sbjct:  1040 GFDEDRGPRRGIDDDRGPRRGFDEDRTPRRGFDDDRGPRRGFDDDRGPRRGFDEDRGPRR 1099

Query:   371 -YDIHRGP--SYDPQRG--LGYDMQRGPN--YDMQRGP--GYETQRVP--GYDVQRGPVY 419
              ++  RGP   ++  RG   G++  RGP   ++  RGP  G+E  R P  G+D  RGP  
Sbjct:  1100 GFEDDRGPRRGFEDDRGPRRGFEDDRGPRRGFEDDRGPRRGFEDDRGPRRGFDEDRGP-- 1157

Query:   420 EAQRAPSYIPQRGP--GYDLQRG--QGYDMRRAP--SYDPSRGT 457
               +R   +   RGP  G+D  R   +G+D  R P    D  RG+
Sbjct:  1158 --RRG--FEDDRGPRRGFDEDRTPRRGFDDDRGPRRGLDEDRGS 1197

GO:0001732 "formation of translation initiation complex" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|F1S187 LOC100518332 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 201 (75.8 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 69/221 (31%), Positives = 84/221 (38%)

Query:   230 PNVDRRADGSYGGATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNT 289
             P   R + G + G     E    GR  G+     GYG  +  G      + G  G G + 
Sbjct:   187 PEDSRPSGGDFRGRGYGGERGYRGRG-GRGGDRGGYGGDRSGGGYGGDRSGGG-GYGGDR 244

Query:   290 STSAYAATQSGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDP 349
             S   Y   +SG      Y   RG GY   +G GY   +   Y   +   Y   +G GY  
Sbjct:   245 SGGGYGGDRSG----GGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRSGGYGGDRGGGYGG 300

Query:   350 TKGPGYDAQKGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQR-GPNY--DMQRGPGYETQ 406
              +G GY   +G  Y   RG  Y   RG  Y   RG GY   R G  Y  D   G GY   
Sbjct:   301 DRGGGYGGDRGGGYGGDRGGGYGGDRG-GYGGDRG-GYGGDRSGGGYGGDRGSGSGYGGD 358

Query:   407 RVPGYDVQR-GPVYEAQRAPSYIPQRGPGYDLQRGQGYDMR 446
             R  GY   R G  Y   R+  Y   RG GY  + G   D R
Sbjct:   359 RSGGYGGDRSGGGYGGDRSGGYGGDRG-GYGGKMGGRNDYR 398

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P11414 POLR2A "DNA-directed RNA polymerase II subunit RPB1" [Cricetulus griseus (taxid:10029)]

 Score = 184 (69.8 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 77/263 (29%), Positives = 101/263 (38%)

Query:   242 GATGNSENETSGRPVGQNAYEDGYGVPQGHGPPPSATTAGVVGAGPNTS---TSAYAATQ 298
             GA G S           +A  D  G   G+ P  S T       GP++    +   A + 
Sbjct:    29 GAAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSP 88

Query:   299 SGTPMRAAYDIPRGPGYEASKGPGYDASKAPSYDPTKGPSYDPAKGPGYDPTKGPGYDAQ 358
             S +P   AY+ PR PG    + P Y  + +PSY PT  PSY P   P Y PT  P Y   
Sbjct:    89 SYSPTSPAYE-PRSPGGYTPQSPSYSPT-SPSYSPTS-PSYSPTS-PNYSPTS-PSYSPT 143

Query:   359 KGSNYDAQRGPNYDIHRGPSYDPQRGLGYDMQRGPNYDMQRGPGYETQRVPGYDVQRGPV 418
               S Y +   P+Y     PSY P     Y     P+Y     P Y     P Y     P 
Sbjct:   144 SPS-Y-SPTSPSYS-PTSPSYSPTSP-SYS-PTSPSYS-PTSPSYSPTS-PSYS-PTSPS 195

Query:   419 YEAQRAPSYIPQRGPGYDLQRGQGYDMRRAPSYDPSRGTGFDGAPRGA--APHGQVPPPL 476
             Y +  +PSY P   P Y       Y    +PSY P+  +    +P  +  +P+     P 
Sbjct:   196 Y-SPTSPSYSPT-SPSYS-PTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSP- 250

Query:   477 NNVPYGSATPPARSGSGQPRGGN 499
             N  P   +  P  S S  P   N
Sbjct:   251 NYTPTSPSYSPT-SPSYSPTSPN 272

GO:0005634 "nucleus" evidence=ISS

GO:0005665 "DNA-directed RNA polymerase II, core complex" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0004672 "protein kinase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	503
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
pfam13851	201	pfam13851, GAS, Growth-arrest specific micro-tubul	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
pfam07926	132	pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	5e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-05
pfam10473	140	pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of	6e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-05
pfam04156	186	pfam04156, IncA, IncA protein	8e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-04
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	3e-04
pfam06160	559	pfam06160, EzrA, Septation ring formation regulato	3e-04
smart00787	312	smart00787, Spc7, Spc7 kinetochore protein	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
pfam06160	559	pfam06160, EzrA, Septation ring formation regulato	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-04
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	7e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.001
PRK04778	569	PRK04778, PRK04778, septation ring formation regul	0.001
pfam09789	319	pfam09789, DUF2353, Uncharacterized coiled-coil pr	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	0.002
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
pfam10481	288	pfam10481, Cenp-F_N, Cenp-F N-terminal domain	0.003
COG3883	265	COG3883, COG3883, Uncharacterized protein conserve	0.003
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	0.003
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	0.003
COG0497	557	COG0497, RecN, ATPase involved in DNA repair [DNA	0.003
COG1322	448	COG1322, COG1322, Predicted nuclease of restrictio	0.003
pfam09730	711	pfam09730, BicD, Microtubule-associated protein Bi	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004
pfam12329	74	pfam12329, TMF_DNA_bd, TATA element modulatory fac	0.004
smart00935	140	smart00935, OmpH, Outer membrane protein (OmpH-lik	0.004
TIGR03007	498	TIGR03007, pepcterm_ChnLen, polysaccharide chain l	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE--- 105
           E  E+        +++L    + L      L  ELA  ++EL+ L  +I  ++   E   
Sbjct: 358 EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLS 417

Query: 106 LQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165
            ++ +L E++ ++EAEL+  +    E ++   E + L    EEL  ++ +L ++L     
Sbjct: 418 ERLEDLKEELKELEAELEELQT---ELEELNEELEELEEQLEELRDRLKELERELAELQE 474

Query: 166 DVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN 211
           ++Q+   L  EL SL           E E++        L+ +E  
Sbjct: 475 ELQR---LEKELSSLEARL----DRLEAEQRASQGVRAVLEALESG 513

Length = 1163

>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 18/135 (13%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
           M++        M ++A EN+R       L + L  A+ E++ L  ++   + +++  ++N
Sbjct: 39  MKKNEEHNEKLMAEIAQENKR-------LVEPLKKAEEEVEELRKKLKDYEKDKQ-SLKN 90

Query: 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV--- 167
           L  ++ ++E ELK    +K E +  +   + +   R+EL  K     QD+Q+  T +   
Sbjct: 91  LKARLKELEKELKN---LKWESEVLEQRFEKVERERDELYDKFEAAIQDVQQ-KTGLKNL 146

Query: 168 ---QQIPALLSELES 179
              Q++ AL  ELE 
Sbjct: 147 LLEQKLEALNEELEK 161

This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localisation of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localised to regions of dynein regulation in mammalian cells. Length = 201

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 17/192 (8%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE---LQMRNLTEKIAK 117
            +++L  E + L      L++ L   + EL+ L   +  +K E E    + + L E++ +
Sbjct: 738 RLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEE 797

Query: 118 MEAELKTAEPVKLEFQKSK-----------TEAQNLVVAREELIAKVHQLTQDLQRAHTD 166
           +E EL+ AE      ++              E + L    EEL  K+ +L ++L+    +
Sbjct: 798 LEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKE 857

Query: 167 VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226
           ++++   L ELE+ ++E        E EK+   + L  L   E     +  E+EKLR  L
Sbjct: 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELREL---ESELAELKEEIEKLRERL 914

Query: 227 MNAPNVDRRADG 238
                   R + 
Sbjct: 915 EELEAKLERLEV 926

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 14/169 (8%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSER---E 105
           E +E+++ S    + KL  E + L      L++EL   + EL+    ++  ++ E    E
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 106 LQMRNLTEKIAKMEAELKTAE----PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161
            +   L ++I ++E E++  E     ++ E ++ + E + L    EEL A+  +L  +L+
Sbjct: 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELK 880

Query: 162 RAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK 210
               + +++   L ELES   E        + E +   + LE L+   +
Sbjct: 881 ELEEEKEELEEELRELESELAE-------LKEEIEKLRERLEELEAKLE 922

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 18/193 (9%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL--------------HGQI 97
              I  +  E+++L  + + L      L + LA  + EL+ L                QI
Sbjct: 669 NSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728

Query: 98  GGMKSE---RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVH 154
             ++ +    E ++  L E+IA++  EL   E    E ++   EA+  +   E  I ++ 
Sbjct: 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788

Query: 155 QLTQDLQRAHTDV-QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI 213
              + L+     + + +  L +EL  L +E  + R   E  ++        L+ +E+   
Sbjct: 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

Query: 214 TMATEVEKLRAEL 226
            ++ ++E L AE+
Sbjct: 849 ELSEDIESLAAEI 861

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 15/177 (8%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAA-----AQHELQILHGQIGGMKSEREL 106
           EQ+I +   E+++L    + L      L + L       +   +     +I    S+ E 
Sbjct: 750 EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP----EIQAELSKLEE 805

Query: 107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166
           ++  +  ++ ++E +L      K   +K   E Q   +  +E I  + +  ++L      
Sbjct: 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN----- 860

Query: 167 VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223
             +   L  ELE L              KK  ++    L+ +E+    +  ++EK R
Sbjct: 861 -GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 33/166 (19%), Positives = 73/166 (43%), Gaps = 14/166 (8%)

Query: 63  QKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM--RNLTEKIAKMEA 120
            +L+   + +      L +EL   +   +I   Q      E EL+     L E++A++E 
Sbjct: 192 GQLSELLEDIEDLLEALEEELKELKKLEEIQEEQ-----EEEELEQEIEALEERLAELEE 246

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           E +  E +K    + ++     +  REE + ++ +L ++L+     ++++   + ELE  
Sbjct: 247 EKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEE 306

Query: 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226
            +             +   + LE L+ +E+    +  ++EKL +EL
Sbjct: 307 LEG-------LRALLEELEELLEKLKSLEERLEKLEEKLEKLESEL 345

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 38/194 (19%), Positives = 82/194 (42%), Gaps = 25/194 (12%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL 111
           E+++      +  L  E + L      L QE+   + E++ L  ++     E E ++  L
Sbjct: 799 EEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKL----DELEEELEEL 854

Query: 112 TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIP 171
            +++ +++ EL+  E    E ++ + E + L   +EEL  ++ +L  +L     +++++ 
Sbjct: 855 EKELEELKEELEELE---AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLR 911

Query: 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMAT-----EVEKLRAEL 226
             L ELE                ++   +  E  + +E+ Y          E+E+L  E+
Sbjct: 912 ERLEELE-------------AKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEI 958

Query: 227 MNAPNVDRRADGSY 240
                V+ RA   Y
Sbjct: 959 EALGPVNLRAIEEY 972

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 18/184 (9%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           +  E+++     E+Q+L  + + L      L +E+   Q EL  L  +I    S  E Q 
Sbjct: 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI----SRLEQQK 304

Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
           + L E++A +E +L+  E    E +             +EL  ++ +L + L+    +++
Sbjct: 305 QILRERLANLERQLEELEAQLEELESKL----------DELAEELAELEEKLEELKEELE 354

Query: 169 QIPALLSELESLRQE----YHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 224
            + A L ELE+  +E            E  +         +  +      +   +E+L  
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414

Query: 225 ELMN 228
               
Sbjct: 415 RRER 418

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 33/180 (18%), Positives = 70/180 (38%), Gaps = 8/180 (4%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSEREL---QM 108
           E +I     ++++L  E + L      LR EL     E   L  ++  ++        ++
Sbjct: 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
            +L E+I ++  ++++      E ++   E ++ + A     A + +    L+    ++ 
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900

Query: 169 -QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227
            ++  L S+   LR+E    R     +       LE L+V   N     +E   L  E  
Sbjct: 901 EELRELESKRSELRRELEELRE----KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 63  QKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL 122
           ++LA    +L      L +EL + ++EL+ L   +  ++ + E   R L E   ++ A  
Sbjct: 674 EELAELEAQLEK----LEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALE 729

Query: 123 KTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQ 182
           +  E ++   ++ + E + L    EEL  ++ +L ++L+     + ++   + ELE  RQ
Sbjct: 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQ 789

Query: 183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT----MATEVEKLRAEL 226
                    E E +     L++L+   ++       +  E+E+L  E+
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 31/187 (16%), Positives = 73/187 (39%), Gaps = 14/187 (7%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           ++ E +   +  E+++     +   A       EL   +  L+ L  ++  ++S     +
Sbjct: 217 KLEEIQEEQEEEELEQEIEALEERLA-------ELEEEKERLEELKARLLEIESLELEAL 269

Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
           +   E++ ++E  L+  E      ++ + E + L    E L A + +L + L++  +  +
Sbjct: 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEE 329

Query: 169 QIPALLSELESLRQEYHHCRGTYEYEKKF-------YNDHLESLQVMEKNYITMATEVEK 221
           ++  L  +LE L  E            K          + LE L+   +  +    ++E+
Sbjct: 330 RLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEE 389

Query: 222 LRAELMN 228
              EL  
Sbjct: 390 AIQELKE 396

Length = 908

>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 21/130 (16%)

Query: 79  LRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKL--EFQKSK 136
           L +E ++ Q EL+    ++   K + E +++ L E + +       A+  K   E  K  
Sbjct: 1   LEEEKSSLQAELK----RLLEKKEDAEEKIQKLQEDLEEQAEIANEAQ-QKYERELVKHA 55

Query: 137 TEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK 196
            + + L   R++L         +L+      ++I  L +E ES + E      ++E +KK
Sbjct: 56  EDIEELQALRKQL--------NELK------KEIAQLKAEAESAQAELSEAEESWEEQKK 101

Query: 197 FYNDHLESLQ 206
              D L  L+
Sbjct: 102 MLEDELSELE 111

The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity. Length = 132

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 50  VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMR 109
            +E++I     E+  LA E  RL      LR+ LA  + +L+ L  Q+  ++S+ +    
Sbjct: 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337

Query: 110 NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV-- 167
            L    A++E +L+  +      +    E +      EEL +++ +L + L+   + V  
Sbjct: 338 EL----AELEEKLEELKEELESLEAELEELEAE---LEELESRLEELEEQLETLRSKVAQ 390

Query: 168 --QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225
              QI +L +E+E L           E  ++   + L+ L+  E   +    E+E+L  E
Sbjct: 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL--QAELEELEEE 448

Query: 226 L 226
           L
Sbjct: 449 L 449

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 18/154 (11%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQEL-------AAAQHELQILHGQIGGMK 101
           E +E++I  +     KL  E   L      LR EL       A  + EL+    ++  +K
Sbjct: 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398

Query: 102 SER-ELQ---------MRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIA 151
            E  EL+         ++ L+E++A + A +   E    E ++ K +    +  +E  + 
Sbjct: 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458

Query: 152 KVHQLTQDLQRAHTDVQQ-IPALLSELESLRQEY 184
           ++       ++   D+++    +  EL  L++E 
Sbjct: 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 27/186 (14%)

Query: 48   PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQ 107
             E +E+++     E+++L  E + L      L +E    + EL+ L  ++  +K E E  
Sbjct: 851  LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910

Query: 108  MRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167
               L E  AK+E         +LE +  + E +      EE       L  +L+R   ++
Sbjct: 911  RERLEELEAKLE---------RLEVELPELEEELE----EEYEDT---LETELER---EI 951

Query: 168  QQIPALLSELES--LR--QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223
            +++   +  L    LR  +EY      YE  K    D  E+     +  + +  E++K +
Sbjct: 952  ERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAK----EKLLEVIEELDKEK 1007

Query: 224  AELMNA 229
             E    
Sbjct: 1008 RERFKE 1013

Length = 1163

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 109 RNLTEKIAKMEAEL---KTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165
           R L +KI ++  EL   K A     + ++ K E   L     E+  K+ +L  + Q  H 
Sbjct: 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYH- 192

Query: 166 DVQQIPALLSELESLRQ---EYH 185
             +++  L  E + LR+   E H
Sbjct: 193 --EEMIKLFEEADELRKEADELH 213

Length = 294

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 18/172 (10%)

Query: 61  EMQKLATENQRLAATHGT----LRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIA 116
             ++   E +            L + L+  +  LQ L        SE E ++    E++ 
Sbjct: 583 TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL------ELSEAENELEEAEEELE 636

Query: 117 KMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE 176
               +L     ++   Q +  E +  V   E  I +  Q  ++ ++    ++++  L  E
Sbjct: 637 SELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEE 696

Query: 177 LESLRQEYHHCRGTYEYEKKF--YNDHLESLQVMEKNYITMATEVEKLRAEL 226
           LE LR+E        E  KK       +E L+  +     +  E+EKL   L
Sbjct: 697 LEQLREELE------ELLKKLGEIEQLIEELESRKAELEELKKELEKLEKAL 742

Length = 908

>gnl|CDD|151039 pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of kinetochore protein Cenp-F/LEK1

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 28/150 (18%)

Query: 81  QELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQ 140
           ++L  ++ E  +L  ++  +  EREL+M    +++  +EAE   AE   L+ +  +  A+
Sbjct: 10  EKLKESEREADLLKDKVENL--ERELEMSEENQELVILEAENSKAEVETLKTKIEEM-AE 66

Query: 141 NLVVAREELIA----KVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK 196
           +L     +L+     K + LT+ LQ     V ++  L S  E+L +E             
Sbjct: 67  SLKDLELDLVTVRSEKEN-LTKQLQEKQERVSELEKLNSSTENLLEE------------- 112

Query: 197 FYNDHLESLQVMEKNYITMATEVEKLRAEL 226
                 E +Q+ E+      T VE L+ +L
Sbjct: 113 ---KEQEKIQMKEE----SKTAVEMLQTQL 135

Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance. Length = 140

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 28/201 (13%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILH-------GQIGGMKSE 103
           +E+++     E+++   E + L +    LR+EL   Q EL  L        G+I  ++  
Sbjct: 251 LEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310

Query: 104 RELQMRN----------LTEKIAKMEAELKTAEPVKLEFQKSKTE--------AQNLVVA 145
            E               L EKI  ++ EL+  E +  E ++   E         + L   
Sbjct: 311 LEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSAL 370

Query: 146 REELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL 205
            EEL      L ++L        ++  + +ELE L++E        E   +   D  E L
Sbjct: 371 LEELEELFEALREELAELE---AELAEIRNELEELKREIESLEERLERLSERLEDLKEEL 427

Query: 206 QVMEKNYITMATEVEKLRAEL 226
           + +E     + TE+E+L  EL
Sbjct: 428 KELEAELEELQTELEELNEEL 448

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 39/193 (20%), Positives = 81/193 (41%), Gaps = 29/193 (15%)

Query: 58  QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSE----------RELQ 107
           +  E++K   E ++L      L++ L   + +L  L  +I  +KSE           E  
Sbjct: 717 KIGEIEK---EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED 773

Query: 108 MRNLTEKIAKMEAELKTAEPVKL---EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164
           +  L E +  +EA L +   +     E  K + E   +     E+  K+++LT + +   
Sbjct: 774 LHKLEEALNDLEARL-SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832

Query: 165 TDVQQIPALLSELE----SLRQEYHHCRGTYEYEKKFYNDHLESLQV----MEKNYITMA 216
            ++Q++     +L+    S+ +E  +  G    +K+   + LE L+     +E     + 
Sbjct: 833 KEIQELQEQRIDLKEQIKSIEKEIENLNG----KKEELEEELEELEAALRDLESRLGDLK 888

Query: 217 TEVEKLRAELMNA 229
            E ++L A+L   
Sbjct: 889 KERDELEAQLREL 901

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 32/139 (23%)

Query: 53  QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLT 112
            K   Q V  QKL      L+     L+Q+L+  Q EL+             +L+     
Sbjct: 62  LKAPVQSVRPQKLEELQGELSE----LKQQLSELQEELE-------------DLE----- 99

Query: 113 EKIAKMEAELKTAEPVK----LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
           E+IA++E+EL+  +          +  +   ++L  + +EL  ++ +L QDL+      +
Sbjct: 100 ERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAKELRELRQDLR------E 153

Query: 169 QIPALLSELESLRQEYHHC 187
           ++  L  ELE L++     
Sbjct: 154 EVEELREELERLQENLQRL 172

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 38/182 (20%), Positives = 76/182 (41%), Gaps = 14/182 (7%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL 111
            +++  Q  E+++   E +R  A      ++L +   EL+    ++     E + ++  L
Sbjct: 704 LEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL 763

Query: 112 TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL----QRAHTDV 167
            E++  +E  L     +K E ++ + + Q L    EEL  ++ +  + L    +   +  
Sbjct: 764 EEELESLEEALAK---LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 168 QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227
           Q+   L  E+E L +E        E +     + LE L   EK    +  E+E+L AE  
Sbjct: 821 QRRERLEQEIEELEEE----IEELEEKLDELEEELEEL---EKELEELKEELEELEAEKE 873

Query: 228 NA 229
             
Sbjct: 874 EL 875

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 30/164 (18%), Positives = 71/164 (43%), Gaps = 5/164 (3%)

Query: 67  TENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA- 125
            E + L      L  +L   + EL+ L  ++  ++   E ++R   E++ +   ELK   
Sbjct: 667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLE-ELRRQLEELERQLEELKREL 725

Query: 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYH 185
             ++ E ++ ++  + L    EEL  ++ +L + L+    +++ +   L++L+   +E  
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785

Query: 186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229
             R   +  ++   +  E L+  E+    +  E+E L       
Sbjct: 786 EKR---QALQEELEELEEELEEAERRLDALERELESLEQRRERL 826

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 17/187 (9%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSE-----REL 106
           E++ A    E+++L  E + L      L +   A + EL+    ++  +  E      +L
Sbjct: 493 EKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKL 552

Query: 107 QMRNLTEKIAKME---AELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA 163
           Q++ L E++ ++E    ELK         +  K E + L    +EL  K+ +L + L + 
Sbjct: 553 QLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQL 612

Query: 164 HTDVQQIPAL--LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 221
              +Q +      +ELE   +E          + +       +L+ +E+       +VE+
Sbjct: 613 EELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEE-------KVEE 665

Query: 222 LRAELMN 228
           L AE+  
Sbjct: 666 LEAEIRR 672

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 16/150 (10%)

Query: 79  LRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE 138
           L+ EL   +  L +L      ++  RE ++  L E++ + E EL+         +  + E
Sbjct: 218 LKAELRELELALLVLR-----LEELRE-ELEELQEELKEAEEELEELTA-----ELQELE 266

Query: 139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFY 198
            +      EEL  +V +L ++++    ++  +   +S LE  +Q         E + +  
Sbjct: 267 EK-----LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321

Query: 199 NDHLESLQVMEKNYITMATEVEKLRAELMN 228
              LE L+           E+E+   EL  
Sbjct: 322 EAQLEELESKLDELAEELAELEEKLEELKE 351

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 39/180 (21%), Positives = 76/180 (42%), Gaps = 25/180 (13%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
           M        + +QKL  E  RL      +R+ L  A+ EL+ L+  +       E+++ +
Sbjct: 1   MMNNNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKAL----EALEIELED 56

Query: 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170
           L  +++++E+E++     ++  +  + E +   V  E  +     L  ++Q A    ++I
Sbjct: 57  LENQVSQLESEIQ-----EIRERIKRAEEKLSAVKDERELR---ALNIEIQIAK---ERI 105

Query: 171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230
            +L  EL  L +E        E  K       E L+ +EKN   +A    +L  E+    
Sbjct: 106 NSLEDELAELMEEIEKLEKEIEDLK-------ERLERLEKN---LAEAEARLEEEVAEIR 155

Length = 239

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 31/140 (22%), Positives = 67/140 (47%), Gaps = 17/140 (12%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           E +E+++AS   E++KL  E   L        + L   +  L+ L+ +I  +  E +L+ 
Sbjct: 240 EAIERQLASLEEELEKLTEEISELE-------KRLEEIEQLLEELNKKIKDLGEEEQLR- 291

Query: 109 RNLTEKIAKMEAELKTAEPV----KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164
             + EKI ++EAE+ + E      + E + ++     L    ++L+A++ +L ++++   
Sbjct: 292 --VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349

Query: 165 TDVQQIPALLSELESLRQEY 184
               +   L  E   L++E 
Sbjct: 350 KRRDK---LTEEYAELKEEL 366

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 37/169 (21%), Positives = 76/169 (44%), Gaps = 12/169 (7%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           E++KL  E + L       ++E+   + EL+ L G    +    E ++R L E+I +++ 
Sbjct: 222 ELEKLEKEVKELEEL----KEEIEELEKELESLEGSKRKL----EEKIRELEERIEELKK 273

Query: 121 ELKTAEP-VK--LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSEL 177
           E++  E  VK   E ++   E   L    EE + ++ ++ + L R   ++  I   + EL
Sbjct: 274 EIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL 333

Query: 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226
           E   +     +   +  +K   +  E  ++ E+       E+E+L+  L
Sbjct: 334 EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE-ELERLKKRL 381

Length = 880

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 42/182 (23%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
           M+ +  +   E++ L +E + L       ++ELA A+ +LQ L  +     ++  +++++
Sbjct: 176 MQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSE-QASSADNSVKIKH 234

Query: 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170
           L E++ + E +   AE VK                +E+L+                  QI
Sbjct: 235 LEEELKRYEQD---AEVVK--------------SMKEQLL------------------QI 259

Query: 171 PALLSELESLRQEYHHCR------GTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 224
           P L  EL +LR+E    R         + E +     LE  + M +    +  E EKL  
Sbjct: 260 PELERELAALREENRKLRSMKEDNELLKEELEDLQSRLERFEKMREKLADLELEKEKLEN 319

Query: 225 EL 226
           EL
Sbjct: 320 EL 321

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA

 Score = 43.3 bits (103), Expect = 3e-04
 Identities = 35/180 (19%), Positives = 75/180 (41%), Gaps = 29/180 (16%)

Query: 60  VEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS--ERELQMRN-LTEKIA 116
            E+Q L  +  +  A    L  +L  A+ E + +  +I  +    E+E++ +  + + I 
Sbjct: 252 KELQDLKEQIDQNLALLEEL--DLDEAEEENEEIEERIDTLYDILEKEVKAKKFVEKNID 309

Query: 117 KMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE 176
           K+   L+ A              QN     ++L+ ++ +L Q       +++ +  L  +
Sbjct: 310 KLTDFLEHAR------------EQN-----KQLLLELDRLQQSYTLNEDELETVRELEKQ 352

Query: 177 LESLRQEYHHCRGTYEYEKKFYN---DHLES----LQVMEKNYITMATEVEKLRAELMNA 229
           LE L  +Y         +K  Y+   + LE     L+ +EK    ++  ++ LR + + A
Sbjct: 353 LEELEAQYDQLVERIAEKKVAYSELQEELEEIEKQLEEIEKEQEELSESLQGLRKDELEA 412

During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. Length = 559

>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 22/159 (13%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           E +++ +     + + L  E + L +    LR    A + EL+ L               
Sbjct: 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQL--------------- 191

Query: 109 RNLTEKIAKM-EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167
           + L +++      EL  A   K + +K   E    V   EEL  ++ +L   ++      
Sbjct: 192 KQLEDELEDCDPTELDRA---KEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKK 248

Query: 168 QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206
            ++   ++E E   ++   CRG    E +   + L+ LQ
Sbjct: 249 SELNTEIAEAEKKLEQ---CRGFTFKEIEKLKEQLKLLQ 284

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 312

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 40/200 (20%), Positives = 85/200 (42%), Gaps = 33/200 (16%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLA-------ATHGTLRQELAAAQHELQILH------- 94
           E +E+KIA     + +L  E + L             L ++++A + +L  L        
Sbjct: 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746

Query: 95  ---GQIGGMKSERELQMRNLTEKIAKMEAELKTAEP----VKLEFQKSKTEAQNLVVARE 147
               Q+    +E E ++  L E++ + E EL  AE     ++ + ++ K E + L  A +
Sbjct: 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806

Query: 148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207
           EL A++  L ++       ++    L   + +  +         E + +  ++ +ESL  
Sbjct: 807 ELRAELTLLNEEAANLRERLES---LERRIAATERRL----EDLEEQIEELSEDIESLAA 859

Query: 208 -MEKNYITMATEVEKLRAEL 226
            +E+    +   +E+L +EL
Sbjct: 860 EIEE----LEELIEELESEL 875

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 33/136 (24%)

Query: 51  MEQKIASQHVEMQKL--ATENQRLAATHG-----TLRQELAAAQHELQILHGQIGGMKSE 103
           +E+ I     E+ +L  + E  R            LR+ L A             G  + 
Sbjct: 113 IEEDIEQILEELNELKESEEKNRKEVEELKDKYRELRKTLLAKSFSY--------G-PAL 163

Query: 104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA 163
            EL+     +++ ++E E +    V+L      TE+ + + ARE L+ K+ + T  L+  
Sbjct: 164 DELE-----KQLDELEEEFEQF--VEL------TESGDYLEAREVLL-KLEEETDALE-- 207

Query: 164 HTDVQQIPALLSELES 179
              +++IP LL EL++
Sbjct: 208 -QKMEEIPPLLKELQN 222

During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. Length = 559

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 13/133 (9%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM----------KSERELQMRN 110
           E+ KL  E  R+ A    + Q+L     E + L  +I  +              E ++ N
Sbjct: 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858

Query: 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170
           L  K  ++E EL+  E    + +       +L   R+EL A++ +L + ++     +++ 
Sbjct: 859 LNGKKEELEEELEELEAALRDLESRL---GDLKKERDELEAQLRELERKIEELEAQIEKK 915

Query: 171 PALLSELESLRQE 183
              LSEL++  + 
Sbjct: 916 RKRLSELKAKLEA 928

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 28/179 (15%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLR---QELAAAQHELQILHGQIGGMKSERELQM 108
           E++++    E+++L  E +        L+   +EL     ELQ             EL  
Sbjct: 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQ------------EELL- 291

Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
             L E+I ++E E+     ++   ++ + E + L    EEL  K+  L ++L+   T ++
Sbjct: 292 -ELKEEIEELEGEISL---LRERLEELENELEELEERLEELKEKIEALKEELEERETLLE 347

Query: 169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL-QVMEKNYITMATEVEKLRAEL 226
           ++  LL+ELE  ++E        E +     + LE L + + +    +  E+ ++R EL
Sbjct: 348 ELEQLLAELEEAKEE-------LEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Length = 1163

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 44/213 (20%)

Query: 61  EMQK----LATENQRLAA----THGTLRQELAA---AQHELQILHGQIGGMKSERELQM- 108
           E++K    L  E   L A        L  E +    AQ EL  +  +I    +E+E +  
Sbjct: 458 ELEKARRRLEAEKDELQAALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEFE 517

Query: 109 ---RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ---R 162
              +N    I  ++A L+ AE       K K EA  L   +++L   +++L   L    +
Sbjct: 518 NTRKNHQRAIESLQATLE-AE------AKGKAEASRL---KKKLEGDINELEIALDHANK 567

Query: 163 AHTDVQ-QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 221
           A+ + Q  +     +++ L+          E E++   D  E L V E+    +  E+E+
Sbjct: 568 ANAEAQKNVKKYQQQVKELQT-------QVEEEQRAREDAREQLAVAERRATALEAELEE 620

Query: 222 LRAELMNAPNVDRRADGSYGGATGNSENETSGR 254
           LR+ L  A    ++A+            E S R
Sbjct: 621 LRSALEQAERARKQAETEL--------AEASER 645

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 15/152 (9%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           E +E ++     +++   T   ++A     L  ++A+  +E++ L  ++  ++  RE   
Sbjct: 368 EELESRLEELEEQLE---TLRSKVAQ----LELQIASLNNEIERLEARLERLEDRRERLQ 420

Query: 109 RNLTEKIAKME----AELKTAEPVKLEFQKSKTEAQNLVVAREELIAK-VHQLTQDLQRA 163
           + + E + K+E     EL+       E  +   E    +    E + + + +  Q L  A
Sbjct: 421 QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480

Query: 164 HTDVQQIPALLSELESLRQEYHHCRGTYEYEK 195
             ++ Q+ A L  LE L++      G  E  K
Sbjct: 481 ERELAQLQARLDSLERLQENL---EGFSEGVK 509

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 35/187 (18%), Positives = 80/187 (42%), Gaps = 36/187 (19%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSEREL--QMR 109
           E++I      +++L  + +RL      L+++L   +  L+ L  +    +  +    ++ 
Sbjct: 320 EEEINGIEERIKELEEKEERL----EELKKKLKELEKRLEELEERHELYEEAKAKKEELE 375

Query: 110 NLTEKIA-----KMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQ---DLQ 161
            L +++      K+E EL+  E  K E ++             ++ A++ +L +   +L+
Sbjct: 376 RLKKRLTGLTPEKLEKELEELEKAKEEIEE----------EISKITARIGELKKEIKELK 425

Query: 162 RAHTDVQQIPALLSELESLRQEYHHCRG--TYEYEKKFYNDHLESLQVMEKNYITMATEV 219
           +A          + EL+  + +   C    T E+ K+   ++   L+ +EK    +  + 
Sbjct: 426 KA----------IEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKE 475

Query: 220 EKLRAEL 226
            KLR EL
Sbjct: 476 RKLRKEL 482

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 30/160 (18%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 77  GTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSK 136
               +EL     E+           +E   ++  L E++ K+E E+K  E +K E ++ +
Sbjct: 196 KEKEKELEEVLREI-----------NEISSELPELREELEKLEKEVKELEELKEEIEELE 244

Query: 137 TEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK 196
            E ++L  ++ +L  K+ +L + ++    +++++   + EL+ L+++       Y    +
Sbjct: 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAE----EYIKLSE 300

Query: 197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA 236
           FY ++L+ L+ +EK    +  E+  +   +      + R 
Sbjct: 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340

Length = 880

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 13/120 (10%)

Query: 50  VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMR 109
           + +   A +     +L    Q LA     L++ELA  Q +L  L  +      E + ++ 
Sbjct: 58  LSDTPSARE-----RLPELQQELAE----LQEELAELQEQLAELQQEN----QELKQELS 104

Query: 110 NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ 169
            L  ++ +++ EL   + +     +   E + L     EL  +   L  + +R   + Q+
Sbjct: 105 TLEAELERLQKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQR 164

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 32/179 (17%), Positives = 73/179 (40%), Gaps = 29/179 (16%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS--ERELQMRN-LTEKIAK 117
           E+Q L  +     A    L  +L  A+ + + +  +I  +    ERE++ R  + +    
Sbjct: 257 EIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDT 314

Query: 118 MEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSEL 177
           +   L+              + QN     +EL  ++ ++ Q      ++++ +  L  +L
Sbjct: 315 LPDFLE------------HAKEQN-----KELKEEIDRVKQSYTLNESELESVRQLEKQL 357

Query: 178 ESLRQEYHHCRGTYEYEKKFY-------NDHLESLQVMEKNYITMATEVEKLRAELMNA 229
           ESL ++Y         ++  Y        + L+ L+ +EK    ++  ++ LR + + A
Sbjct: 358 ESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEA 416

Length = 569

>gnl|CDD|220404 pfam09789, DUF2353, Uncharacterized coiled-coil protein (DUF2353)

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 29/166 (17%)

Query: 42  FDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG--- 98
              M      +++  SQ +E  +   ENQ+L+     LRQ  A  Q ++++L   I    
Sbjct: 56  QGDMKIKPGTKRQDLSQLLEKYR--EENQQLSTDVQELRQRKAELQGDIKLLRQTIAQQR 113

Query: 99  ----GMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVH 154
               G       + RN  + ++++E   +  + ++ + +    E + +++ R+E   K H
Sbjct: 114 VEFMGGGVRESFEERN--DLVSQLEKLREKCKQLESDLRSLLDEKEEVLMERDEYQRKAH 171

Query: 155 QLTQDL-------QRAHTDV-----------QQIPALLSELESLRQ 182
           +L  +L        R   DV           ++I  L  E E ++ 
Sbjct: 172 RLNNELSYLLGGDPRRVVDVDALVMENRYLKEKINTLEEESELIKM 217

Members of this family of uncharacterized proteins have no known function. Length = 319

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 24/138 (17%)

Query: 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162
            R+  +   T ++ ++E ELK  E  + + +K   E + ++    ELI           +
Sbjct: 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI-----------K 497

Query: 163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEK------------KFYNDHLESLQVMEK 210
                +Q+  L  +L+    E    +   EYEK            K     LE L+ ++K
Sbjct: 498 LKELAEQLKELEEKLKKYNLEELE-KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKK 556

Query: 211 NYITMATEVEKLRAELMN 228
               +  ++++L  EL  
Sbjct: 557 KLAELEKKLDELEEELAE 574

Length = 880

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 23/194 (11%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           E   +++ SQ  E+Q    E QR          +L + +  LQ  +  +     E E Q+
Sbjct: 179 EKKAKQLESQLSELQVKLDELQRQ-------LNDLTSQKSRLQSENSDLTRQLEEAEAQV 231

Query: 109 RNLTEKIAKMEAELKTA---------EPVKL--EFQKSKTEAQNLVVAREELIAKVHQLT 157
            NL++  +++E++L+ A         E   L  + ++ + +  +L    EE      +L 
Sbjct: 232 SNLSKLKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELE 291

Query: 158 QDLQRAHTDVQQIPALL-SELESLRQEYHHCRGTYEYEKKFYNDHLESLQV----MEKNY 212
           + L +A+ ++QQ  +   SE     +E    +     +     +  E+       +EK  
Sbjct: 292 RQLSKANAEIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTK 351

Query: 213 ITMATEVEKLRAEL 226
             + +E+E L+ EL
Sbjct: 352 SRLQSELEDLQIEL 365

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           E+QK   E + +       RQ LA AQ EL  L  Q   +++     ++ L E+  ++EA
Sbjct: 110 ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR----LKTLAEQRRQLEA 165

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           + ++ +  + + Q S T+   L     +L  +  Q+ Q+ Q   T      A   EL   
Sbjct: 166 QAQSLQASQKQLQASATQ---LKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARR 222

Query: 181 RQ 182
             
Sbjct: 223 AA 224

Length = 499

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 24/141 (17%), Positives = 57/141 (40%), Gaps = 17/141 (12%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQEL-------AAAQHELQILHGQIGGMKSE 103
           +E+ + S  +   +   E            ++L          Q  L+ L  ++  +++E
Sbjct: 612 LEELLQSLELSEAENELEEAEEELES--ELEKLNLQAELEELLQAALEELEEKVEELEAE 669

Query: 104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA 163
              +     E   ++E +L+  E ++ E ++ + E        EEL+ K+ ++ Q ++  
Sbjct: 670 IR-RELQRIENEEQLEEKLEELEQLEEELEQLREE-------LEELLKKLGEIEQLIEEL 721

Query: 164 HTDVQQIPALLSELESLRQEY 184
            +   ++  L  ELE L +  
Sbjct: 722 ESRKAELEELKKELEKLEKAL 742

Length = 908

>gnl|CDD|119001 pfam10481, Cenp-F_N, Cenp-F N-terminal domain

 Score = 39.4 bits (91), Expect = 0.003
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL 111
           +QK+ ++  E   L  ENQRL      L +      HELQ+   Q+    + +E Q+ + 
Sbjct: 52  KQKVENEKTEGANLKRENQRLMEICEHLEKTKQKISHELQVKESQV----NFQEGQLNSC 107

Query: 112 TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVA 145
            ++I K+E ELK     K E ++S+  AQ+  V+
Sbjct: 108 KKQIEKLEQELKRC---KSELERSQQAAQSADVS 138

Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal par to f the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein. Length = 288

>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL 111
           ++KI  Q  E +K   E Q   A      + L A Q+EL+     +   K+E+   +  L
Sbjct: 146 DKKILEQQKEDKKSLEEKQ---AALEDKLETLVALQNELETQLNSLNSQKAEKNALIAAL 202

Query: 112 TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQD-LQRAHTDVQQ 169
             K A    E K A    LE QK+  EA     A++E  AK     Q  LQ A T  Q 
Sbjct: 203 AAKEASALGE-KAA----LEEQKALAEAAAAEAAKQEAAAKAAAQEQAALQAAATAAQP 256

Length = 265

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 17/118 (14%)

Query: 79  LRQELAAAQHELQILHGQIGG---MKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKS 135
           L +E++     L  L+ QI     + S      ++L + +A + A L  AE  +   Q  
Sbjct: 44  LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103

Query: 136 KTEAQNLVVAREELIAKVHQLTQDL---------QRAHTDV--QQIPALLSELESLRQ 182
             E      A      +  +L Q+L           A  ++  QQI AL  +L +L  
Sbjct: 104 LAELAG---AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA 158

Length = 343

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 13/152 (8%)

Query: 77  GTLRQELAAAQHELQILHGQIGGMKSERELQMRNLT-EKIAKMEAELKTAEPVKLEFQKS 135
               + L  A++E+  L  +    +++R    + +  E+ A    + K  +    E  + 
Sbjct: 241 KEFEKMLEKAENEIYRLQSRCDTSEADRNRLDKEVEAERSALAAMKAKC-DRAAQELSRK 299

Query: 136 KTEAQNLVVAREELIAKVHQLTQDLQRAHTDV---QQIPALL-SELESLRQEYHHCRGTY 191
           KTE   L    E L  +   + Q L +   D+   +Q  A+L +E+++LR E        
Sbjct: 300 KTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTEVDALRYEL------- 352

Query: 192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223
           E +         SLQ  ++   T A E+E +R
Sbjct: 353 ERKHNTLTKKTASLQAAQEEKATYAGEIEDMR 384

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 25/175 (14%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM-RNLTEKIAKME 119
           E ++L  E +RL+     L + +  A   L++L G+   + +   L       E +++ +
Sbjct: 206 EDEELEEERKRLS-NSEKLAEAIQNA---LELLSGEDDTVSALSLLGRALEALEDLSEYD 261

Query: 120 AELKTAEPVKLEFQKSKTEAQN-LVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELE 178
            +L        E  +   EA   L  A EEL A + +L  D  R    ++++   L  L+
Sbjct: 262 GKLS-------ELAELLEEALYELEEASEELRAYLDELEFDPNR----LEEVEERLFALK 310

Query: 179 SLRQEYHHCRGT----YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229
           SL ++Y     T     EY  K   + L  L   E++   +  EV+KL+AEL+ A
Sbjct: 311 SLARKYG---VTIEDLLEYLDKIKEE-LAQLDNSEESLEALEKEVKKLKAELLEA 361

Length = 557

>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 27/142 (19%), Positives = 57/142 (40%), Gaps = 20/142 (14%)

Query: 49  EVMEQKIASQHVEMQKLATE-NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQ 107
               +++ +    +Q L  E  Q L      L+Q+L  ++ +LQ+L         E   Q
Sbjct: 51  RAEAEQLRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQLLI--------ESLAQ 102

Query: 108 MRN-LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQD-----LQ 161
           + +   E   ++  EL          + ++   + L+    E++ K  +  +       +
Sbjct: 103 LSSEFQELANEIFEELNRR-----LAELNQQNLKQLLKPLREVLEKFREQLEQRIHESAE 157

Query: 162 RAHTDVQQIPALLSELESLRQE 183
              T +++I  LL E++ L QE
Sbjct: 158 ERSTLLEEIDRLLGEIQQLAQE 179

Length = 448

>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 12/121 (9%)

Query: 110 NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQ-NLVVAREELI---AKVHQLTQDLQRAHT 165
           NL+E I K++ +L+  E  K     +  E Q  L  +   L     KV++LT+ L  A  
Sbjct: 257 NLSE-IQKLKQQLEQVEREKASLLANLQELQTQLEQSEGALSEQHEKVNRLTEHLN-ALR 314

Query: 166 DVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225
           ++Q        L+S +    H  G Y      Y   +   +++E  Y    +EV +L+AE
Sbjct: 315 NLQASKEQQDGLDSEKDRGSHEDGDY------YEVDINGPEILECKYRVAVSEVGELKAE 368

Query: 226 L 226
           L
Sbjct: 369 L 369

BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER). For full functioning they bind with GSK-3beta pfam05350 to maintain the anchoring of microtubules to the centromere. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells. Length = 711

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 7/159 (4%)

Query: 74  ATHGTL--RQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE 131
                L  R+E+   + +++ L  +I   + E+ L    L +++ ++E EL+       E
Sbjct: 668 TNSSILERRREIEELEEKIEELEEKI--AELEKALAE--LRKELEELEEELEQLRKELEE 723

Query: 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ-QIPALLSELESLRQEYHHCRGT 190
             +  +  +  +   E  + ++ +    L +  T+++ +I  L   LE   +E       
Sbjct: 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783

Query: 191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229
            E  +       E L+ + +    +  E+  L  E  N 
Sbjct: 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 30/182 (16%)

Query: 49   EVMEQKIASQHVEMQKLATENQR---------LAATHGTLRQELAAAQHELQILHGQIGG 99
            E +E++I  Q ++ Q++  + Q          L      L +EL   +  L+ L  ++G 
Sbjct: 829  EYLEKEI--QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886

Query: 100  MKSER---ELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAR-EELIAKVHQ 155
            +K ER   E Q+R L  KI ++EA+++     +L   K+K EA    ++  E+   +  +
Sbjct: 887  LKKERDELEAQLRELERKIEELEAQIEKKR-KRLSELKAKLEALEEELSEIEDPKGEDEE 945

Query: 156  LTQDLQRAHTDVQQIPALLSELESLR-------QEYHHCRGTYEYEKKFYNDHLESLQVM 208
            + ++         ++  +  E+ +L        QE       YE   K  ++  E    +
Sbjct: 946  IPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQE-------YEEVLKRLDELKEKRAKL 998

Query: 209  EK 210
            E+
Sbjct: 999  EE 1000

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|221533 pfam12329, TMF_DNA_bd, TATA element modulatory factor 1 DNA binding

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 15/77 (19%)

Query: 52  EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSEREL--QMR 109
           +++IA    E +KL+ +  +   T   LR +    +             K   EL  ++ 
Sbjct: 11  DEQIAQLMEEGEKLSKKELKHNNTIKKLRAKNKELE-------------KEIAELKKKLE 57

Query: 110 NLTEKIAKMEAELKTAE 126
            L +++  +E  LK AE
Sbjct: 58  KLEKELENLEERLKRAE 74

This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal and plant cells. Length = 74

>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like)

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 15/109 (13%)

Query: 53  QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLT 112
           QKI  +    +      ++L       + EL   + ELQ        +K + +     L+
Sbjct: 7   QKILQESPAGKAA---QKQLEKEFKKRQAELEKLEKELQ-------KLKEKLQKDAATLS 56

Query: 113 EK-IAKMEAELKTAEPVKLEFQKSKTEAQN-LVVAREELIAKVHQLTQD 159
           E    K E EL+       EFQ+ + + Q  L   ++E + K+      
Sbjct: 57  EAAREKKEKELQKKV---QEFQRKQQKLQQDLQKRQQEELQKILDKINK 102

This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140

>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 20/184 (10%)

Query: 49  EVMEQKIASQHVEMQKLATEN-QRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQ 107
           +  E+K+ +    ++    EN   L    G    E++ AQ EL+              L+
Sbjct: 171 KTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELE-----------AARLE 219

Query: 108 MRNLTEKIAKMEAELKTAEPVKL-EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166
           +     +   ++ +L   EPV L     + +E    +   E L  ++  L       H D
Sbjct: 220 LNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRI---EALEKQLDALRLRYTDKHPD 276

Query: 167 VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV----MEKNYITMATEVEKL 222
           V      +++LE  ++E    +       +  N   + LQ+     E    ++   V +L
Sbjct: 277 VIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAEL 336

Query: 223 RAEL 226
            A +
Sbjct: 337 TARI 340

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 498

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	503
PRK11637	428	AmiB activator; Provisional	99.1
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	99.06
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.03
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.03
PRK11637	428	AmiB activator; Provisional	99.02
PF00038	312	Filament: Intermediate filament protein; InterPro:	99.01
COG4942	420	Membrane-bound metallopeptidase [Cell division and	98.99
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.94
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.93
COG4372	499	Uncharacterized protein conserved in bacteria with	98.92
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.88
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.87
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.87
PHA02562	562	46 endonuclease subunit; Provisional	98.87
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.86
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.85
PHA02562	562	46 endonuclease subunit; Provisional	98.83
COG4942	420	Membrane-bound metallopeptidase [Cell division and	98.79
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.77
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.77
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.76
PRK02224	880	chromosome segregation protein; Provisional	98.76
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.76
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.76
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.73
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.73
PF14662	193	CCDC155: Coiled-coil region of CCDC155	98.72
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.72
PRK03918	880	chromosome segregation protein; Provisional	98.72
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.71
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.71
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.7
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.7
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	98.7
PRK02224	880	chromosome segregation protein; Provisional	98.69
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.69
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.64
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.64
PRK03918	880	chromosome segregation protein; Provisional	98.64
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.64
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.63
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.6
COG4372	499	Uncharacterized protein conserved in bacteria with	98.6
PRK04863	1486	mukB cell division protein MukB; Provisional	98.55
PRK09039	343	hypothetical protein; Validated	98.54
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.54
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.53
PF14662	193	CCDC155: Coiled-coil region of CCDC155	98.53
PRK04863	1486	mukB cell division protein MukB; Provisional	98.51
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.51
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.5
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	98.5
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.48
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.47
PRK09039	343	hypothetical protein; Validated	98.47
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.47
KOG2991	330	consensus Splicing regulator [RNA processing and m	98.46
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	98.45
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.44
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	98.44
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	98.44
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	98.43
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	98.43
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.43
PRK01156	895	chromosome segregation protein; Provisional	98.42
PRK01156	895	chromosome segregation protein; Provisional	98.41
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	98.4
COG5185	622	HEC1 Protein involved in chromosome segregation, i	98.4
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	98.4
KOG0979	1072	consensus Structural maintenance of chromosome pro	98.4
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	98.39
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	98.39
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.38
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	98.38
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.38
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.36
PRK04778	569	septation ring formation regulator EzrA; Provision	98.35
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	98.34
PRK04778	569	septation ring formation regulator EzrA; Provision	98.34
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.34
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.33
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.33
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	98.33
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.32
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	98.32
KOG1999	1024	consensus RNA polymerase II transcription elongati	98.32
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.31
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	98.31
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.3
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.28
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	98.27
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	98.27
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	98.26
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	98.26
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	98.26
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.26
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	98.25
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.25
KOG0979	1072	consensus Structural maintenance of chromosome pro	98.25
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.25
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	98.25
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	98.25
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	98.24
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.24
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	98.23
KOG4673	961	consensus Transcription factor TMF, TATA element m	98.22
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	98.22
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	98.22
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	98.21
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.21
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	98.2
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	98.2
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	98.19
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	98.17
KOG0249	916	consensus LAR-interacting protein and related prot	98.17
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.17
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	98.17
COG5185	622	HEC1 Protein involved in chromosome segregation, i	98.17
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	98.16
KOG1003	205	consensus Actin filament-coating protein tropomyos	98.16
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	98.15
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	98.15
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	98.14
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	98.14
KOG0018	1141	consensus Structural maintenance of chromosome pro	98.13
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.13
KOG0963	629	consensus Transcription factor/CCAAT displacement	98.12
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	98.12
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	98.11
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	98.1
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.1
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	98.09
KOG0963	629	consensus Transcription factor/CCAAT displacement	98.08
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	98.08
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	98.08
KOG1003	205	consensus Actin filament-coating protein tropomyos	98.07
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	98.05
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	98.05
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	98.05
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.05
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	98.05
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	98.04
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	98.03
PF13514	1111	AAA_27: AAA domain	98.02
KOG2991	330	consensus Splicing regulator [RNA processing and m	98.0
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.99
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	97.99
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	97.98
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	97.98
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	97.98
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	97.98
COG4477	570	EzrA Negative regulator of septation ring formatio	97.98
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	97.97
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.96
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.96
PF13166	712	AAA_13: AAA domain	97.95
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	97.95
PF13514	1111	AAA_27: AAA domain	97.94
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	97.94
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.94
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	97.94
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	97.94
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	97.93
KOG4807	593	consensus F-actin binding protein, regulates actin	97.93
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.92
KOG0249	916	consensus LAR-interacting protein and related prot	97.91
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	97.91
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	97.9
PRK11281	1113	hypothetical protein; Provisional	97.89
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	97.88
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	97.88
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	97.88
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.86
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	97.86
PRK10698	222	phage shock protein PspA; Provisional	97.86
KOG4572	1424	consensus Predicted DNA-binding transcription fact	97.85
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	97.85
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	97.84
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	97.83
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	97.82
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	97.82
KOG0260	1605	consensus RNA polymerase II, large subunit [Transc	97.82
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	97.82
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	97.82
PRK10929	1109	putative mechanosensitive channel protein; Provisi	97.81
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.8
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.8
PF12815	123	CTD: Spt5 C-terminal nonapeptide repeat binding Sp	97.8
PF13166	712	AAA_13: AAA domain	97.8
PRK10869	553	recombination and repair protein; Provisional	97.79
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	97.79
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.79
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	97.78
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	97.78
PLN02939	977	transferase, transferring glycosyl groups	97.77
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.77
PRK10246	1047	exonuclease subunit SbcC; Provisional	97.76
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	97.76
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	97.76
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	97.76
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	97.75
PRK11281	1113	hypothetical protein; Provisional	97.75
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.74
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	97.74
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	97.73
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	97.73
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	97.72
KOG1999	1024	consensus RNA polymerase II transcription elongati	97.69
KOG4807	593	consensus F-actin binding protein, regulates actin	97.68
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	97.68
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	97.67
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	97.67
PRK10929	1109	putative mechanosensitive channel protein; Provisi	97.66
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	97.65
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	97.65
COG4477	570	EzrA Negative regulator of septation ring formatio	97.65
KOG1103	561	consensus Predicted coiled-coil protein [Function	97.64
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	97.63
KOG1937	521	consensus Uncharacterized conserved protein [Funct	97.63
cd00176	213	SPEC Spectrin repeats, found in several proteins i	97.62
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	97.61
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	97.61
PRK10246	1047	exonuclease subunit SbcC; Provisional	97.59
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	97.58
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	97.58
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	97.57
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	97.57
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	97.57
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	97.56
KOG1937	521	consensus Uncharacterized conserved protein [Funct	97.56
KOG0993	542	consensus Rab5 GTPase effector Rabaptin-5 [Intrace	97.55
PLN02939	977	transferase, transferring glycosyl groups	97.55
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.55
cd07627	216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	97.54
PF15294	278	Leu_zip: Leucine zipper	97.53
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	97.53
COG2433	652	Uncharacterized conserved protein [Function unknow	97.53
PRK10698	222	phage shock protein PspA; Provisional	97.53
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	97.52
PF12815	123	CTD: Spt5 C-terminal nonapeptide repeat binding Sp	97.51
PRK10869	553	recombination and repair protein; Provisional	97.51
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	97.5
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	97.5
PRK10361	475	DNA recombination protein RmuC; Provisional	97.49
PF10186	302	Atg14: UV radiation resistance protein and autopha	97.49
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	97.49
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	97.48
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	97.48
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	97.47
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	97.47
smart00806	426	AIP3 Actin interacting protein 3. Aip3p/Bud6p is a	97.46
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.46
KOG1103	561	consensus Predicted coiled-coil protein [Function	97.45
PF00015	213	MCPsignal: Methyl-accepting chemotaxis protein (MC	97.45
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	97.45
PF10186	302	Atg14: UV radiation resistance protein and autopha	97.44
KOG1655	218	consensus Protein involved in vacuolar protein sor	97.43
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	97.43
COG2433	652	Uncharacterized conserved protein [Function unknow	97.42
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	97.41
PF15294	278	Leu_zip: Leucine zipper	97.4
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	97.39
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	97.39
COG3096	1480	MukB Uncharacterized protein involved in chromosom	97.37
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	97.37
KOG2196	254	consensus Nuclear porin [Nuclear structure]	97.37
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	97.36
PF01442	202	Apolipoprotein: Apolipoprotein A1/A4/E domain; Int	97.36
PF03915	424	AIP3: Actin interacting protein 3; InterPro: IPR02	97.35
PRK11519	719	tyrosine kinase; Provisional	97.34
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	97.34
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	97.32
PF12252	1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	97.32
KOG4687	389	consensus Uncharacterized coiled-coil protein [Fun	97.32
cd07664	234	BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.31
PF14988	206	DUF4515: Domain of unknown function (DUF4515)	97.31
cd07624	200	BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o	97.29
cd07667	240	BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of	97.28
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	97.28
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	97.27
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	97.27
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	97.27
PF12252	1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	97.27
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	97.26
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	97.25
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.24
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	97.24
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	97.24
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	97.23
KOG4677	554	consensus Golgi integral membrane protein [Intrace	97.23
PRK10361	475	DNA recombination protein RmuC; Provisional	97.23
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	97.22
KOG4677	554	consensus Golgi integral membrane protein [Intrace	97.21
PF14992	280	TMCO5: TMCO5 family	97.2
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	97.19
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	97.18
PF08580	683	KAR9: Yeast cortical protein KAR9; InterPro: IPR01	97.17
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	97.17
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	97.17
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	97.16
KOG1850	391	consensus Myosin-like coiled-coil protein [Cytoske	97.16
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	97.15
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	97.14
KOG3958	371	consensus Putative dynamitin [Cytoskeleton]	97.12
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	97.12
cd07665	234	BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.11
cd07627	216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	97.1
PTZ00464	211	SNF-7-like protein; Provisional	97.09
KOG4302	660	consensus Microtubule-associated protein essential	97.09
COG3096	1480	MukB Uncharacterized protein involved in chromosom	97.08
PF14992	280	TMCO5: TMCO5 family	97.07
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	97.06
KOG0993	542	consensus Rab5 GTPase effector Rabaptin-5 [Intrace	97.06
cd07599	216	BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o	97.05
cd07664	234	BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.05
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	97.04
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	97.04
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	97.03
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	97.02
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	97.01
KOG0992	613	consensus Uncharacterized conserved protein [Funct	97.01
KOG2008	426	consensus BTK-associated SH3-domain binding protei	97.0
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	96.99
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	96.99
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	96.95
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	96.95
COG3206	458	GumC Uncharacterized protein involved in exopolysa	96.95
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	96.95
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	96.95
KOG2685	421	consensus Cystoskeletal protein Tektin [Cytoskelet	96.95
PF13805	271	Pil1: Eisosome component PIL1; PDB: 3PLT_B.	96.94
PRK11519	719	tyrosine kinase; Provisional	96.94
KOG4572	1424	consensus Predicted DNA-binding transcription fact	96.94
COG4487	438	Uncharacterized protein conserved in bacteria [Fun	96.94
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	96.93
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	96.93
cd07623	224	BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of	96.92
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	96.89
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	96.89
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	96.89
PRK03947	140	prefoldin subunit alpha; Reviewed	96.89
PRK10884	206	SH3 domain-containing protein; Provisional	96.89
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	96.88
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.88
KOG0992	613	consensus Uncharacterized conserved protein [Funct	96.86
KOG2273	503	consensus Membrane coat complex Retromer, subunit	96.84
PRK09343	121	prefoldin subunit beta; Provisional	96.83
PF05276	239	SH3BP5: SH3 domain-binding protein 5 (SH3BP5); Int	96.82
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	96.81
KOG0288	459	consensus WD40 repeat protein TipD [General functi	96.81
PTZ00464	211	SNF-7-like protein; Provisional	96.81
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	96.8
cd07672	240	F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin	96.78
PRK10476	346	multidrug resistance protein MdtN; Provisional	96.78
PF05276	239	SH3BP5: SH3 domain-binding protein 5 (SH3BP5); Int	96.77
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	96.77
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	96.77
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	96.76
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	96.75
PF05149	289	Flagellar_rod: Paraflagellar rod protein; InterPro	96.75
KOG4637	464	consensus Adaptor for phosphoinositide 3-kinase [S	96.74
COG4717	984	Uncharacterized conserved protein [Function unknow	96.74
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	96.74
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	96.74
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	96.73
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	96.72
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	96.72
cd07648	261	F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am	96.7
COG4717	984	Uncharacterized conserved protein [Function unknow	96.69
COG1322	448	Predicted nuclease of restriction endonuclease-lik	96.68
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	96.68
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	96.68
KOG2196	254	consensus Nuclear porin [Nuclear structure]	96.67
COG4026	290	Uncharacterized protein containing TOPRIM domain,	96.67
PLN03188	1320	kinesin-12 family protein; Provisional	96.67
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	96.65
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	96.65
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	96.65
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	96.63
PF05769	181	DUF837: Protein of unknown function (DUF837); Inte	96.63
smart00806	426	AIP3 Actin interacting protein 3. Aip3p/Bud6p is a	96.63
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	96.62
KOG0972	384	consensus Huntingtin interacting protein 1 (Hip1)	96.62
PF01540	353	Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR0	96.61
PF05816	333	TelA: Toxic anion resistance protein (TelA); Inter	96.6
PRK09343	121	prefoldin subunit beta; Provisional	96.6
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	96.59
COG3206	458	GumC Uncharacterized protein involved in exopolysa	96.59
PF04740	204	LXG: LXG domain of WXG superfamily; InterPro: IPR0	96.57
KOG4687	389	consensus Uncharacterized coiled-coil protein [Fun	96.57
cd07588	211	BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma	96.57
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	96.57
KOG3647	338	consensus Predicted coiled-coil protein [General f	96.57
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	96.56
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	96.55
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	96.54
KOG3771	460	consensus Amphiphysin [Intracellular trafficking,	96.53
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	96.51
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	96.51
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	96.51
KOG4302	660	consensus Microtubule-associated protein essential	96.51
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	96.5
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	96.5
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	96.46
PRK03947	140	prefoldin subunit alpha; Reviewed	96.45
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	96.45
PF04108	412	APG17: Autophagy protein Apg17 ; InterPro: IPR0072	96.44
PRK10476	346	multidrug resistance protein MdtN; Provisional	96.43
COG5293	591	Predicted ATPase [General function prediction only	96.43
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	96.42
cd07675	252	F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/	96.41
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	96.4
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	96.4
KOG0972	384	consensus Huntingtin interacting protein 1 (Hip1)	96.38
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	96.38
KOG1962	216	consensus B-cell receptor-associated protein and r	96.37
PF06120	301	Phage_HK97_TLTM: Tail length tape measure protein;	96.37
KOG4787	852	consensus Uncharacterized conserved protein [Funct	96.37
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	96.36
PF06120	301	Phage_HK97_TLTM: Tail length tape measure protein;	96.34
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	96.34
PLN03188	1320	kinesin-12 family protein; Provisional	96.32
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	96.32
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	96.29
COG5293	591	Predicted ATPase [General function prediction only	96.28
PF02994	370	Transposase_22: L1 transposable element; InterPro:	96.25
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	96.25
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	96.24
PF09311	181	Rab5-bind: Rabaptin-like protein; InterPro: IPR015	96.24
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	96.23
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	96.23
PF09486	158	HrpB7: Bacterial type III secretion protein (HrpB7	96.23
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	96.22
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	96.22
PF03915	424	AIP3: Actin interacting protein 3; InterPro: IPR02	96.22
PF13949	296	ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HI	96.19
cd07665	234	BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S	96.19
KOG2008	426	consensus BTK-associated SH3-domain binding protei	96.19
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	96.17
PF04108	412	APG17: Autophagy protein Apg17 ; InterPro: IPR0072	96.17
PF14735	238	HAUS4: HAUS augmin-like complex subunit 4	96.16
PF13094	160	CENP-Q: CENP-Q, a CENPA-CAD centromere complex sub	96.15
PF09486	158	HrpB7: Bacterial type III secretion protein (HrpB7	96.14
KOG4637	464	consensus Adaptor for phosphoinositide 3-kinase [S	96.13
cd07598	211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	96.13
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	96.12
COG3264	835	Small-conductance mechanosensitive channel [Cell e	96.12
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	96.11
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	96.11
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	96.1
cd07676	253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	96.1
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	96.1
PF01540	353	Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR0	96.07
PF11802	268	CENP-K: Centromere-associated protein K; InterPro:	96.07
cd07598	211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	96.07
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	96.06
PRK03598	331	putative efflux pump membrane fusion protein; Prov	96.05
PF08580	683	KAR9: Yeast cortical protein KAR9; InterPro: IPR01	96.04
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	96.04
KOG3647	338	consensus Predicted coiled-coil protein [General f	96.04
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	96.03
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	96.03
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	96.03
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	96.02
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	95.99
PF11802	268	CENP-K: Centromere-associated protein K; InterPro:	95.97
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	95.97
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	95.97
PF15272	196	BBP1_C: Spindle pole body component BBP1, C-termin	95.96
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	95.95
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	95.95
PF04065	233	Not3: Not1 N-terminal domain, CCR4-Not complex com	95.95
KOG2273	503	consensus Membrane coat complex Retromer, subunit	95.94
PF13805	271	Pil1: Eisosome component PIL1; PDB: 3PLT_B.	95.93
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	95.93
PF10191	766	COG7: Golgi complex component 7 (COG7); InterPro:	95.93
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	95.91
cd07612	211	BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B	95.89
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	95.87
PRK12705	508	hypothetical protein; Provisional	95.86
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	95.84
COG1322	448	Predicted nuclease of restriction endonuclease-lik	95.83
PF12004	495	DUF3498: Domain of unknown function (DUF3498); Int	95.82
PRK00409	782	recombination and DNA strand exchange inhibitor pr	95.81
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	95.81
PF15358	558	TSKS: Testis-specific serine kinase substrate	95.79
PRK12705	508	hypothetical protein; Provisional	95.78
cd07656	241	F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/A	95.78
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	95.77
KOG1655	218	consensus Protein involved in vacuolar protein sor	95.77
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	95.76
cd09234	337	V_HD-PTP_like Protein-interacting V-domain of mamm	95.76
cd07686	234	F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amp	95.76
KOG4787	852	consensus Uncharacterized conserved protein [Funct	95.76
KOG2751	447	consensus Beclin-like protein [Signal transduction	95.75
cd07662	218	BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S	95.75
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	95.75
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	95.74
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	95.72
PRK15048	553	methyl-accepting chemotaxis protein II; Provisiona	95.71

>PRK11637 AmiB activator; Provisional

Probab=99.10  E-value=4.3e-08  Score=105.10  Aligned_cols=74  Identities=12%  Similarity=0.184  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAEL  122 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL  122 (503)
                      ..++++|+.+..+|+.+..++..+..++..+..+|..+..+|..+...|..++.   +.+.++..|+++|..+++++
T Consensus        43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l  119 (428)
T PRK11637         43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ  119 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666666666666666655555555555555555555555555443322   23334444444444444433

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=99.06  E-value=6.6e-08  Score=109.04  Aligned_cols=183  Identities=17%  Similarity=0.264  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhccchH----------HHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATH-------GTLRQELAAAQHELQILHGQIGGMKS----------ERELQMRNL  111 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~-------~~LrqeLa~lq~EL~~L~~qL~~lka----------e~E~el~eL  111 (503)
                      ..||.+|+.+..||+......+.|..++       ..++.+|..++.+.+.|+..+..+..          .+|.++++.
T Consensus       421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE  500 (697)
T PF09726_consen  421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE  500 (697)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888888888776555444444442       23444555555555555555444332          334444444


Q ss_pred             HHHHHHHHHHHHHH--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          112 TEKIAKMEAELKTA--------------------------EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (503)
Q Consensus       112 ~eki~kLEaEL~~l--------------------------e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~  165 (503)
                      .++...+|++|.+.                          +.++....+++.|+++|+.++...+.++..|+.+++.++.
T Consensus       501 ~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~  580 (697)
T PF09726_consen  501 RRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455444321                          1234445556666666666666666666666666654443


Q ss_pred             h----hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhccc
Q 010712          166 D----VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK-------NYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       166 e----lqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk-------~L~sm~rEIekLraELekle~  231 (503)
                      .    .+.++.|...|..++.+-.+|+..|..+.+.+.+|-..|-+...       .+.+-++||..|+++|+++-+
T Consensus       581 ~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a  657 (697)
T PF09726_consen  581 YEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA  657 (697)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2    22456677778888888888888888887766666555444444       444567777777777777644

; GO: 0016021 integral to membrane

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.03  E-value=6e-08  Score=114.52  Aligned_cols=46  Identities=17%  Similarity=0.217  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q   96 (503)
                      ++.++..+..++..++.+..++..++..+++++..+..++..+...
T Consensus       292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~  337 (1164)
T TIGR02169       292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE  337 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.03  E-value=6.3e-08  Score=114.37  Aligned_cols=31  Identities=13%  Similarity=0.183  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          195 KKFYNDHLESLQVMEKNYITMATEVEKLRAE  225 (503)
Q Consensus       195 kk~~~el~eqlqemEk~L~sm~rEIekLraE  225 (503)
                      ++.+..+.+++.+++.++..+..++..++.+
T Consensus       454 ~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~  484 (1164)
T TIGR02169       454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKE  484 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK11637 AmiB activator; Provisional

Probab=99.02  E-value=1.6e-07  Score=100.74  Aligned_cols=77  Identities=16%  Similarity=0.224  Sum_probs=53.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHH
Q 010712           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELK  123 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL~  123 (503)
                      ....++++|+.+..+|+.+..+...+..++..+..+|..++.+|..++.+|..+..   ..+.+|.++++++..++.++.
T Consensus        48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~  127 (428)
T PRK11637         48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA  127 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677778888888887777777777777777777777777777777666665544   444566666666666666554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=99.01  E-value=2.1e-07  Score=95.38  Aligned_cols=117  Identities=24%  Similarity=0.379  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhccch---HHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQEL--------AAAQHELQILHGQIGGMK---SERELQMRNLTEKIA  116 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeL--------a~lq~EL~~L~~qL~~lk---ae~E~el~eL~eki~  116 (503)
                      ...|.++|......|+.|+.+|++|..++..++...        .....+|..++..|..+.   +..+.++..|...+.
T Consensus         6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~   85 (312)
T PF00038_consen    6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELE   85 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHH
Confidence            356889999999999999999999999998876651        124455555555554432   233334444444443


Q ss_pred             HH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          117 KM----EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (503)
Q Consensus       117 kL----EaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk  164 (503)
                      .+    +.+......++.+|..++.+++.....+.+|+.+++.|..+|..++
T Consensus        86 ~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~  137 (312)
T PF00038_consen   86 DLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK  137 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence            33    3344455677778888888888888888888888888877776443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=98.99  E-value=6.3e-07  Score=94.71  Aligned_cols=74  Identities=14%  Similarity=0.251  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAE  121 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaE  121 (503)
                      ....+++|.....+|..++.++.....+...|+.+|..++.+|..++.+|.+...   +.+..|.++...+..|+.+
T Consensus        33 ~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q  109 (420)
T COG4942          33 AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ  109 (420)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence            3444455666666666666555555555555555555555555555555544332   3334444455555444443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.94  E-value=2.2e-07  Score=109.48  Aligned_cols=39  Identities=18%  Similarity=0.240  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQ   87 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq   87 (503)
                      ..++.++..+..++..+..+...+..++..++.++..++
T Consensus       673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~  711 (1179)
T TIGR02168       673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELE  711 (1179)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555444444444444444333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.93  E-value=2.6e-07  Score=108.91  Aligned_cols=19  Identities=21%  Similarity=0.379  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLAT   67 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~   67 (503)
                      ..++.++..+..+++.+..
T Consensus       694 ~~~~~~~~~~~~~l~~l~~  712 (1179)
T TIGR02168       694 AELEKALAELRKELEELEE  712 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444433333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=98.92  E-value=3.5e-07  Score=94.47  Aligned_cols=60  Identities=22%  Similarity=0.273  Sum_probs=29.1

Q ss_pred             CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712           36 PGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG   95 (503)
Q Consensus        36 ~~~~~p~~~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~   95 (503)
                      .|.|---++.|++..+..+|.....+....+.|..+...++...++|-+..++++..++.
T Consensus        71 ~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~  130 (499)
T COG4372          71 SGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQ  130 (499)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456622355556555555555555555555554444444444444444444444443333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.88  E-value=5e-07  Score=98.30  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=29.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQ   81 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrq   81 (503)
                      +..|.++|....++|++|+.+|.+|..++..|+.
T Consensus        44 l~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~   77 (546)
T KOG0977|consen   44 LQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRG   77 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678888888999999999999999999988876

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.87  E-value=7.8e-07  Score=96.85  Aligned_cols=53  Identities=21%  Similarity=0.363  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK  101 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lk  101 (503)
                      ..|+.+|+....|...|...+..|+.+...|+.++..++.+|...+....+++
T Consensus       139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~  191 (546)
T PF07888_consen  139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK  191 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777778877788887777777777777777776666655443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.87  E-value=9.3e-07  Score=96.27  Aligned_cols=51  Identities=22%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      .++.++++.+.+..+...|+.++..|..++..|+.+|...+.+...|..+.
T Consensus       144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~  194 (546)
T PF07888_consen  144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQ  194 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666666666666666666666666666555555554443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.87  E-value=6.1e-07  Score=98.71  Aligned_cols=16  Identities=19%  Similarity=0.337  Sum_probs=8.8

Q ss_pred             CCCCCCCCCCCCCCCCC
Q 010712           26 PFVSGMRPPMPGAFPPF   42 (503)
Q Consensus        26 ~~~~~~~p~~~~~~~p~   42 (503)
                      .|-..+.+| .|.|.||
T Consensus       129 ~f~~~v~l~-q~~f~~f  144 (562)
T PHA02562        129 SFKQIVVLG-TAGYVPF  144 (562)
T ss_pred             HHhHHheec-cCchhhH
Confidence            344433344 7788776

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.86  E-value=5.3e-07  Score=103.30  Aligned_cols=61  Identities=18%  Similarity=0.181  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV  232 (503)
Q Consensus       172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~e  232 (503)
                      ++..+++.|.+|+++++..+..++.+..++.+.+.+.++++...+.+|..|+..++....+
T Consensus       398 e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~  458 (1074)
T KOG0250|consen  398 ERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEE  458 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555555555666666666666655555555555555544433

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=4.7e-07  Score=102.11  Aligned_cols=113  Identities=20%  Similarity=0.278  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHH--
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELK--  123 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL~--  123 (503)
                      ..++++|+++..++|+++.+...+..++..|++++..++.+...++..+.....   .+...+..+.++...+++|+.  
T Consensus       695 ~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~se  774 (1200)
T KOG0964|consen  695 EDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSE  774 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Confidence            345667777777777777777777778888888888887777777776654322   334445555555555555443  


Q ss_pred             -----------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          124 -----------TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (503)
Q Consensus       124 -----------~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELq  161 (503)
                                 ++.+|..||..+..++..+..++.+++..+..|+..|.
T Consensus       775 l~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~  823 (1200)
T KOG0964|consen  775 LFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLN  823 (1200)
T ss_pred             HHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       45678888888999999888888888888888877774

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.83  E-value=6.6e-07  Score=98.43  Aligned_cols=18  Identities=11%  Similarity=0.226  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010712          210 KNYITMATEVEKLRAELM  227 (503)
Q Consensus       210 k~L~sm~rEIekLraELe  227 (503)
                      .++..+..+++++..+++
T Consensus       379 ~~l~~l~~~l~~~~~~~~  396 (562)
T PHA02562        379 EELAKLQDELDKIVKTKS  396 (562)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=98.79  E-value=1.9e-06  Score=91.22  Aligned_cols=116  Identities=16%  Similarity=0.152  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE----LESLRQEYHHCRGTYEYEKKFYNDHLE  203 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E----Ie~L~qELq~lR~ele~ekk~~~el~e  203 (503)
                      +...++.+...+..|...++.+..+..+|+..+.....+.+++..+..|    +..|..++..-++.++.++.....+..
T Consensus       159 ~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~  238 (420)
T COG4942         159 RAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKN  238 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3344555666666666666666666666665555444444444433333    333334444444444555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-ccccccccCCCCCCC
Q 010712          204 SLQVMEKNYITMATEVEKLRAELMN-APNVDRRADGSYGGA  243 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraELek-le~el~~~~~~y~~~  243 (503)
                      .+..++.+..+...+-+.-+++.+. ...+.++.+..|.+.
T Consensus       239 ~Ias~e~~aA~~re~~aa~~aa~~~~~~~e~~r~~~~~~~~  279 (420)
T COG4942         239 EIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPT  279 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcCCC
Confidence            5555554433322222222222111 233344556677663

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.77  E-value=8.8e-07  Score=88.00  Aligned_cols=97  Identities=11%  Similarity=0.211  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010712          133 QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI-----------PALLSELESLRQEYHHCRGTYEYEKKFYNDH  201 (503)
Q Consensus       133 eqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi-----------~~l~~EIe~L~qELq~lR~ele~ekk~~~el  201 (503)
                      ..+..+|..+......++.++..|..+|..+...++.+           ..+...|..|...|..+....+.....+..+
T Consensus       123 ~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~L  202 (237)
T PF00261_consen  123 KVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKL  202 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444333332221           2223334444444444444444444455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          202 LESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       202 ~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      ..++..++..|.....+...++.+|+.+
T Consensus       203 e~~id~le~eL~~~k~~~~~~~~eld~~  230 (237)
T PF00261_consen  203 EKEIDRLEDELEKEKEKYKKVQEELDQT  230 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.77  E-value=9.3e-07  Score=101.53  Aligned_cols=37  Identities=16%  Similarity=0.258  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQ   91 (503)
Q Consensus        55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~   91 (503)
                      +..+..+.+.++.+..++++.+..+.+++..+..+|+
T Consensus       386 ~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~e  422 (1293)
T KOG0996|consen  386 FESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIE  422 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444443333333333333333333333333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.76  E-value=3.9e-06  Score=83.38  Aligned_cols=185  Identities=17%  Similarity=0.217  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHH--
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELK--  123 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL~--  123 (503)
                      ..|+++|.....++..+..++.........+..++..++.+|..|...+.....   ....++..+....+..+..++  
T Consensus         4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~l   83 (237)
T PF00261_consen    4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVL   83 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666666666666665555566666666666666666655543221   223333333333222222221  


Q ss_pred             ---------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhh
Q 010712          124 ---------TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ----QIPALLSELESLRQEYHHCRGT  190 (503)
Q Consensus       124 ---------~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq----qi~~l~~EIe~L~qELq~lR~e  190 (503)
                               +++.|..+|..++..+..+.....++..++..+..+|.++...+.    ++..+..+|..+...|..++..
T Consensus        84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~  163 (237)
T PF00261_consen   84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEAS  163 (237)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhh
Confidence                     234455555555555555555555555556566666554443322    2333444444444333333322


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          191 -------YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       191 -------le~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                             .+.....+..+..++++.+......++.+.+|..+|+.++.+|
T Consensus       164 ~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL  213 (237)
T PF00261_consen  164 EEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL  213 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   2223334444555555555555555555555555555555544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK02224 chromosome segregation protein; Provisional

Probab=98.76  E-value=1.3e-06  Score=101.41  Aligned_cols=18  Identities=17%  Similarity=0.224  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHhccc
Q 010712          214 TMATEVEKLRAELMNAPN  231 (503)
Q Consensus       214 sm~rEIekLraELekle~  231 (503)
                      .+..+++.++.++..++.
T Consensus       416 ~l~~~~~~l~~~~~~~~~  433 (880)
T PRK02224        416 ELREERDELREREAELEA  433 (880)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333334444433333333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.76  E-value=1.7e-06  Score=103.41  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRL   72 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrL   72 (503)
                      ++++|..+..++..+..+...+
T Consensus       265 ~~~~i~~~~~~~~e~~~~~~~~  286 (1163)
T COG1196         265 AEKEIEELKSELEELREELEEL  286 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=1.1e-06  Score=99.43  Aligned_cols=136  Identities=18%  Similarity=0.210  Sum_probs=73.5

Q ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           97 IGGMKSERELQMRNLTEKIAKMEAELKT-----------AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (503)
Q Consensus        97 L~~lkae~E~el~eL~eki~kLEaEL~~-----------le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~  165 (503)
                      +....++.+.++++|...|+.++..+++           .+.|..|+++++.+++.......+++.++..|..++..+..
T Consensus       778 ~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~  857 (1174)
T KOG0933|consen  778 MKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEA  857 (1174)
T ss_pred             HhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445556666666666555444331           23455555566666665555556666666666555554443


Q ss_pred             hhhhh----HHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712          166 DVQQI----PALLSELESLR-------QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV  232 (503)
Q Consensus       166 elqqi----~~l~~EIe~L~-------qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~e  232 (503)
                      .+..+    ..+.++|...+       .++..+-.+.+.+..++...+..+++++.++..|.+|-..++.+++++.+.
T Consensus       858 kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k  935 (1174)
T KOG0933|consen  858 KVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKK  935 (1174)
T ss_pred             HHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHh
Confidence            33221    11222222222       233333344445555555555667777777777777777777777777665

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.73  E-value=2.4e-06  Score=98.10  Aligned_cols=64  Identities=17%  Similarity=0.271  Sum_probs=51.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712          169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV  232 (503)
Q Consensus       169 qi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~e  232 (503)
                      ++..|..|++.++..+..|+.+++.++..+....+++...+..+..+.+.|+....+|..+++.
T Consensus       402 k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~  465 (1074)
T KOG0250|consen  402 KLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKT  465 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4667788888888888888888888888888888877778888888888888888888777654

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.73  E-value=3e-06  Score=101.40  Aligned_cols=52  Identities=27%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe  227 (503)
                      +++.++.++..+..++...+....++.+++.+++.++..+..++++++..+.
T Consensus       864 ~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  915 (1163)
T COG1196         864 ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE  915 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444445555555555555544444444444

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=98.72  E-value=9.3e-06  Score=77.50  Aligned_cols=59  Identities=12%  Similarity=0.123  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      +...|+..+-..+.-+-.-...+.+...++.++..-++....-++.|+.|+.+|+..+.
T Consensus       131 ~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~  189 (193)
T PF14662_consen  131 EKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS  189 (193)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444344444555666666777777777666667777777777766553

>TIGR00606 rad50 rad50

Probab=98.72  E-value=1.6e-06  Score=104.78  Aligned_cols=57  Identities=23%  Similarity=0.330  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          106 LQMRNLTEKIAKMEAELK------TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       106 ~el~eL~eki~kLEaEL~------~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      .++..|+.+|..++.++.      .++.+..++..++.++..+..++..+..+++.++.+|.+
T Consensus       799 ~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~  861 (1311)
T TIGR00606       799 MELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQH  861 (1311)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445554444333      123455555555555555444433334443333333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=98.72  E-value=3.7e-06  Score=97.43  Aligned_cols=31  Identities=13%  Similarity=0.253  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTL   79 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~L   79 (503)
                      ..++++|+.+..++..|..+...+..++..+
T Consensus       455 ~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~  485 (880)
T PRK03918        455 EEYTAELKRIEKELKEIEEKERKLRKELREL  485 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666666666666665555555444

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.71  E-value=2.6e-06  Score=103.81  Aligned_cols=40  Identities=8%  Similarity=0.087  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM  215 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm  215 (503)
                      +|.+|...+..+..+++.++.....+++++.++..+++.+
T Consensus      1098 ~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l 1137 (1930)
T KOG0161|consen 1098 QIKELEARIKELEEELEAERASRAKAERQRRDLSEELEEL 1137 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444443333333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.71  E-value=2.2e-06  Score=98.57  Aligned_cols=48  Identities=21%  Similarity=0.269  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~   99 (503)
                      ++.+..+...|.+|+.++++...++.+++...+..+.+++.++.+|.+
T Consensus       404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~  451 (1293)
T KOG0996|consen  404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQ  451 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHH
Confidence            344444444444444444444444444333333333344444444333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.70  E-value=5.7e-06  Score=93.96  Aligned_cols=190  Identities=18%  Similarity=0.224  Sum_probs=94.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhccchH---------------HHHHH
Q 010712           46 PPPEVMEQKIASQHVEMQKLATENQRLAA---THGTLRQELAAAQHELQILHGQIGGMKS---------------ERELQ  107 (503)
Q Consensus        46 p~p~~LEqeIe~~~~EIq~Le~enqrLa~---e~~~LrqeLa~lq~EL~~L~~qL~~lka---------------e~E~e  107 (503)
                      .....++.+|+..+.|+..|+.+++.|+.   .+..|+++|+...+++..+...+++...               +.+.+
T Consensus       677 ~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~  756 (1174)
T KOG0933|consen  677 QKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQ  756 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHH
Confidence            33456777777777777777777666544   4566777888777777777666654211               11111


Q ss_pred             HH-------HHHHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 010712          108 MR-------NLTEKIAKMEAELK--------TAEPVKLEFQKSKTEAQNLV-------VAREELIAKVHQLTQDLQRAHT  165 (503)
Q Consensus       108 l~-------eL~eki~kLEaEL~--------~le~Lk~ELeqLraELqqL~-------~erqeLe~qiq~L~~ELqrlk~  165 (503)
                      |.       ...+++..+|..+.        ++..|.++|+.++..+++..       .+.+.|+.++++|+.++...++
T Consensus       757 Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~  836 (1174)
T KOG0933|consen  757 IKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQ  836 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11       12222222222221        13334444444444433333       3333334444444444433333


Q ss_pred             hhh----hhHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          166 DVQ----QIPALLSELESLRQEYHHCRGTYEYEKKFY-------NDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       166 elq----qi~~l~~EIe~L~qELq~lR~ele~ekk~~-------~el~eqlqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      .+.    ++..++.++.+|+..+..+..+.+...+.+       .++..++..+....+.+.+|+..+.-++.++++++.
T Consensus       837 ~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~  916 (1174)
T KOG0933|consen  837 QLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVT  916 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHH
Confidence            322    233444444444444444333333333333       333334444444445666677777777778887775


Q ss_pred             c
Q 010712          235 R  235 (503)
Q Consensus       235 ~  235 (503)
                      .
T Consensus       917 ~  917 (1174)
T KOG0933|consen  917 K  917 (1174)
T ss_pred             H
Confidence            4

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.70  E-value=3.4e-06  Score=91.98  Aligned_cols=115  Identities=22%  Similarity=0.329  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhcc---chHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL-------HGQIGG---MKSERELQMRNLTEKIAKME  119 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L-------~~qL~~---lkae~E~el~eL~eki~kLE  119 (503)
                      ..|.+|..+..-|.....+..+++.++..|+.+++.++..+...       +..+..   ...+++.++.-++.+++.|+
T Consensus        89 ~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le  168 (546)
T KOG0977|consen   89 KYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE  168 (546)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence            44555555555555554445555555555555555444444444       333321   22356667777777788888


Q ss_pred             HHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          120 AELKTA----EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (503)
Q Consensus       120 aEL~~l----e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk  164 (503)
                      .++..+    ..|..+|..+++++++-...+.+++.+++.|.++|..++
T Consensus       169 ~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  169 DELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            777654    467788888888888888889999999999999997655

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=98.70  E-value=3.8e-06  Score=83.25  Aligned_cols=111  Identities=16%  Similarity=0.227  Sum_probs=54.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE  126 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le  126 (503)
                      .++.|+.++..+..++......+.++..++..++..+.+++.++..++.++..    .+.+++++.++++..+..+.. .
T Consensus        11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~----~e~ei~~~r~r~~~~e~kl~~-v   85 (239)
T COG1579          11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQ----LESEIQEIRERIKRAEEKLSA-V   85 (239)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc-c
Confidence            34455555555555555555555555555555555555555555555555433    233455555555555554421 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      +-..++..|..+++.+......|+.++..|..++.+
T Consensus        86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~  121 (239)
T COG1579          86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEK  121 (239)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112234444444444444444444444444444433

>PRK02224 chromosome segregation protein; Provisional

Probab=98.69  E-value=4.4e-06  Score=97.01  Aligned_cols=43  Identities=16%  Similarity=0.241  Sum_probs=25.1

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          187 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       187 lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      ++.+++.+.+.+..+...+..++..+..+..+|..++..++.+
T Consensus       651 l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~e~~  693 (880)
T PRK02224        651 AREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL  693 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555566666666666666666666666554

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.69  E-value=4.4e-06  Score=94.49  Aligned_cols=29  Identities=21%  Similarity=0.327  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           56 ASQHVEMQKLATENQRLAATHGTLRQELA   84 (503)
Q Consensus        56 e~~~~EIq~Le~enqrLa~e~~~LrqeLa   84 (503)
                      ..++.||++|..|++.....-++|+.+|.
T Consensus       421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis  449 (697)
T PF09726_consen  421 SRLEADVKKLRAELQSSRQSEQELRSQIS  449 (697)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence            34444444444444444444444444444

; GO: 0016021 integral to membrane

>TIGR00606 rad50 rad50

Probab=98.64  E-value=6.7e-06  Score=99.53  Aligned_cols=187  Identities=11%  Similarity=0.183  Sum_probs=89.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------chHHHHHHHHHHHHHHHHHHH
Q 010712           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG------MKSERELQMRNLTEKIAKMEA  120 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~------lkae~E~el~eL~eki~kLEa  120 (503)
                      .+..|+.+|..+..++..|..++..+..+...++.+|..++..+..+.....+      .+.+++.++.+|.+.+..+..
T Consensus       823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~  902 (1311)
T TIGR00606       823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR  902 (1311)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777776666666666666666655554433333332222      223444455555555555444


Q ss_pred             HHHH----HhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHhhh----------------hhHHH
Q 010712          121 ELKT----AEPVKLEFQKSKTEAQNLVVAR----EELIAKVHQLTQDLQR---AHTDVQ----------------QIPAL  173 (503)
Q Consensus       121 EL~~----le~Lk~ELeqLraELqqL~~er----qeLe~qiq~L~~ELqr---lk~elq----------------qi~~l  173 (503)
                      ++..    +..+..++..++.++.++....    .++..+++.+...+..   +..+++                ++..+
T Consensus       903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~  982 (1311)
T TIGR00606       903 EIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTV  982 (1311)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4432    2223333333333332222211    1111122222211111   111111                11222


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccc
Q 010712          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM--ATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm--~rEIekLraELekle~el  233 (503)
                      ...|+.++.+++.+..+++.+++.+..+......+..+|..+  ..++..++.+|..|+.+.
T Consensus       983 ~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~ 1044 (1311)
T TIGR00606       983 NAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEM 1044 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555556666666666666666666666666666666655  666666666666665443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.64  E-value=1.3e-05  Score=88.35  Aligned_cols=104  Identities=21%  Similarity=0.277  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------------hHHHHHHHHHHHHHHHHH
Q 010712          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ------------------IPALLSELESLRQEYHHC  187 (503)
Q Consensus       126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq------------------i~~l~~EIe~L~qELq~l  187 (503)
                      +.|+.||...+.++..++.........+..|..+|.+++.+++-                  |..+..|.+..+.+...+
T Consensus       312 esL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~  391 (522)
T PF05701_consen  312 ESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEA  391 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666666665555555566666666555554431                  122233333444444444


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          188 RGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       188 R~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +.++..++..++..+..+.+++..|....++++..++--+..
T Consensus       392 ~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~A  433 (522)
T PF05701_consen  392 KEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALA  433 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555666666666666666666655544433

Several sequences in this family are described as being myosin heavy chain-like.

>PRK03918 chromosome segregation protein; Provisional

Probab=98.64  E-value=7.9e-06  Score=94.70  Aligned_cols=31  Identities=32%  Similarity=0.456  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010712          109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEA  139 (503)
Q Consensus       109 ~eL~eki~kLEaEL~~le~Lk~ELeqLraEL  139 (503)
                      ..|.+++..++.++..++.++.+++.++.++
T Consensus       217 ~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~  247 (880)
T PRK03918        217 PELREELEKLEKEVKELEELKEEIEELEKEL  247 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.64  E-value=1e-05  Score=90.93  Aligned_cols=47  Identities=9%  Similarity=0.110  Sum_probs=25.2

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          187 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       187 lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      ||.+|+.++-.+.++..++.+..+.+-...+-|.|.+.-+.+|+..+
T Consensus       495 LreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdql  541 (1243)
T KOG0971|consen  495 LREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQL  541 (1243)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            44445544444444444544444444455666666666666665544

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.63  E-value=3.2e-05  Score=79.29  Aligned_cols=39  Identities=23%  Similarity=0.409  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQ   87 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq   87 (503)
                      ..++.+|..+...|..+..++.+|..++..++.++..++
T Consensus        50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r   88 (312)
T PF00038_consen   50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLR   88 (312)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence            456666666666666666666666555555555544443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.60  E-value=3.4e-05  Score=78.33  Aligned_cols=86  Identities=17%  Similarity=0.277  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010712          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ----QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL  205 (503)
Q Consensus       130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq----qi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eql  205 (503)
                      .++..+.+++..+..++.++..+|+.|..+++....++-    .+..++.+++.++.++..+...++.+...+..+...+
T Consensus       158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~el  237 (294)
T COG1340         158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNEL  237 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            344555556666666666666666666666655444432    3455566666666666666666666666665555555


Q ss_pred             HHHHHHHHHH
Q 010712          206 QVMEKNYITM  215 (503)
Q Consensus       206 qemEk~L~sm  215 (503)
                      .++++.+..+
T Consensus       238 re~~k~ik~l  247 (294)
T COG1340         238 RELEKKIKAL  247 (294)
T ss_pred             HHHHHHHHHH
Confidence            5555555433

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=98.60  E-value=2.8e-05  Score=80.70  Aligned_cols=183  Identities=14%  Similarity=0.204  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELKTA  125 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL~~l  125 (503)
                      +++...|..+..|+.....+....+.+.+..++||....+|-+..+.++..++.   ..+.++..|.++...+..++..+
T Consensus        77 ddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l  156 (499)
T COG4372          77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTL  156 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455666666666666666666667777777777776666666666554332   33344444555555555444432


Q ss_pred             h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHh-----
Q 010712          126 E----PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD-------VQQIPALLSELESLRQEYHHCRG-----  189 (503)
Q Consensus       126 e----~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e-------lqqi~~l~~EIe~L~qELq~lR~-----  189 (503)
                      .    .|.++++.|..+-++|+....+|..++.+|..+-.++.++       .+.+.....|+..+...++...+     
T Consensus       157 ~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qr  236 (499)
T COG4372         157 AEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQR  236 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1    1222222222222222222222222222222222222211       12223333333333333333333     


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          190 --TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       190 --ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                        .|......+..-.+++.+-|..++.++.+..-|+.|++.+++
T Consensus       237 d~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~  280 (499)
T COG4372         237 DAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA  280 (499)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              333333333344455666666666666666666666666554

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.55  E-value=1.8e-05  Score=95.96  Aligned_cols=37  Identities=5%  Similarity=0.121  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       195 kk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      +..+....+++++++.++..+++++.+++.+++.+++
T Consensus       441 e~~LenF~aklee~e~qL~elE~kL~~lea~leql~~  477 (1486)
T PRK04863        441 EDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ  477 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444433

>PRK09039 hypothetical protein; Validated

Probab=98.54  E-value=7.5e-06  Score=85.70  Aligned_cols=57  Identities=12%  Similarity=0.239  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 010712          170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM----ATEVEKLRAEL  226 (503)
Q Consensus       170 i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm----~rEIekLraEL  226 (503)
                      |..|+.||+.|+.+|..++.+|+..++...+...++.+++.+|+.+    .+++++++.++
T Consensus       139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~  199 (343)
T PRK09039        139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF  199 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            4445555555555565555555555555555555666665555543    34555555555

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.54  E-value=3.1e-05  Score=85.34  Aligned_cols=108  Identities=21%  Similarity=0.274  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010712          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIP----ALLSELESLRQEYHHCRGTYEYEKKFYNDH  201 (503)
Q Consensus       126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~----~l~~EIe~L~qELq~lR~ele~ekk~~~el  201 (503)
                      ..++.||+.++.+|+.+..+...|...+..|..+|.+.+.++.++.    .....|..|..+|..++.+|+.++......
T Consensus       284 ~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~  363 (522)
T PF05701_consen  284 ASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKA  363 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcch
Confidence            3444555555555555555555555555556666655555544432    223345666666666666666655555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          202 LESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       202 ~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      .....+|...|+.+..|.+..+.++...+.++
T Consensus       364 k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~  395 (522)
T PF05701_consen  364 KEAMSELPKALQQLSSEAEEAKKEAEEAKEEV  395 (522)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556666666666666666666665555544

Several sequences in this family are described as being myosin heavy chain-like.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=1.6e-05  Score=88.12  Aligned_cols=10  Identities=20%  Similarity=0.388  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q 010712          109 RNLTEKIAKM  118 (503)
Q Consensus       109 ~eL~eki~kL  118 (503)
                      +.|..++..|
T Consensus       447 etLn~k~qql  456 (1118)
T KOG1029|consen  447 ETLNFKLQQL  456 (1118)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=98.53  E-value=4.5e-05  Score=72.92  Aligned_cols=42  Identities=29%  Similarity=0.298  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712           55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (503)
Q Consensus        55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q   96 (503)
                      |+.++.--++|..++.+|...++.+.+.-+.+..++..|+.+
T Consensus        10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q   51 (193)
T PF14662_consen   10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQ   51 (193)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444433333333333333333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.51  E-value=3e-05  Score=94.12  Aligned_cols=40  Identities=10%  Similarity=0.000  Sum_probs=19.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          189 GTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       189 ~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      ..++.......+...++.++++++..++.+++.++.++..
T Consensus       442 ~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~  481 (1486)
T PRK04863        442 DWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQL  481 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444445555555555555555555444443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.51  E-value=1.5e-05  Score=86.41  Aligned_cols=100  Identities=11%  Similarity=0.097  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq  206 (503)
                      .+...|..++.|+.....+++.|..+++.|...|+...--.+++..+..|..+|.+++.++..+++.+.+.+-+++.+++
T Consensus       291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~  370 (581)
T KOG0995|consen  291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIE  370 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            34455556666666666666666666666666554433233445666777777777777777777777777766666655


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010712          207 VMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       207 emEk~L~sm~rEIekLraEL  226 (503)
                      +.-++++++..++.++..+|
T Consensus       371 ~~f~~le~~~~~~~~l~~~i  390 (581)
T KOG0995|consen  371 DFFKELEKKFIDLNSLIRRI  390 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555554444

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.50  E-value=3.4e-05  Score=87.12  Aligned_cols=47  Identities=26%  Similarity=0.367  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      +.++++.+..++..+..+.+.+..++..++.+++.++.+++.++..+
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~  253 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKF  253 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555554443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=98.50  E-value=2.7e-05  Score=89.29  Aligned_cols=55  Identities=22%  Similarity=0.206  Sum_probs=37.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712          181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR  235 (503)
Q Consensus       181 ~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~  235 (503)
                      ++..+.|+.+.+++-....+..+.|++|+-.+..-++.|+.+.++|..|++++.+
T Consensus      1688 r~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1688 RERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence            3445555555555555555666677777777777777788888888888877653

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.48  E-value=3.6e-05  Score=85.65  Aligned_cols=64  Identities=17%  Similarity=0.233  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEK  114 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~ek  114 (503)
                      +|+.+..+..+|..|.....+|+.+...|+.-++.++.++...+.+|+.+.+..+..+++|.++
T Consensus        97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk  160 (1265)
T KOG0976|consen   97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAK  160 (1265)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence            4444444444455555444555555555544455555555544444444444444444444443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.47  E-value=5e-05  Score=82.48  Aligned_cols=30  Identities=20%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTL   79 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~L   79 (503)
                      .|++..+....+|..|+..++.|.+.+.++
T Consensus       225 ~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~  254 (581)
T KOG0995|consen  225 RLEKYFTSIANEIEDLKKTNRELEEMINER  254 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666777888888888877766543

>PRK09039 hypothetical protein; Validated

Probab=98.47  E-value=3e-05  Score=81.23  Aligned_cols=49  Identities=16%  Similarity=0.237  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      .|.++|+....||..|..+...|.+.+.--+.....++.+|..++.++.
T Consensus        43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~   91 (343)
T PRK09039         43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS   91 (343)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3566777777777766666666555444444455555555555555554

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=1.4e-05  Score=88.63  Aligned_cols=30  Identities=17%  Similarity=0.295  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          131 EFQKSKTEAQNLVVAREELIAKVHQLTQDL  160 (503)
Q Consensus       131 ELeqLraELqqL~~erqeLe~qiq~L~~EL  160 (503)
                      |+.+|+++|+++++.++.|.-+.+.|..+|
T Consensus       487 ei~qlqarikE~q~kl~~l~~Ekq~l~~ql  516 (1118)
T KOG1029|consen  487 EIDQLQARIKELQEKLQKLAPEKQELNHQL  516 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            344444444444444444444444444333

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=98.46  E-value=0.00012  Score=72.57  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010712          102 SERELQMRNLTEKIAKMEAEL  122 (503)
Q Consensus       102 ae~E~el~eL~eki~kLEaEL  122 (503)
                      +.+|+++.++..+|..|++..
T Consensus       139 A~kEQEmqe~~sqi~~lK~qq  159 (330)
T KOG2991|consen  139 ATKEQEMQECTSQIQYLKQQQ  159 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            466777888888888777654

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=98.45  E-value=3.7e-05  Score=85.66  Aligned_cols=48  Identities=19%  Similarity=0.275  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      .+.+......|++.|..+++.|..+++.+..+++.++.++..+..++.
T Consensus       319 ~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~  366 (594)
T PF05667_consen  319 EEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE  366 (594)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555555555554444443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.44  E-value=4.4e-05  Score=85.96  Aligned_cols=17  Identities=12%  Similarity=0.182  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHhccc
Q 010712          215 MATEVEKLRAELMNAPN  231 (503)
Q Consensus       215 m~rEIekLraELekle~  231 (503)
                      |+..|..|+.+|..++.
T Consensus       460 lEekVklLeetv~dlEa  476 (1243)
T KOG0971|consen  460 LEEKVKLLEETVGDLEA  476 (1243)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45556666666666543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=98.44  E-value=1.3e-05  Score=83.17  Aligned_cols=60  Identities=18%  Similarity=0.273  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          107 QMRNLTEKIAKMEAELKTAEPVKLEFQKS-KTEAQNLVVAREELIAKVHQLTQDLQRAHTD  166 (503)
Q Consensus       107 el~eL~eki~kLEaEL~~le~Lk~ELeqL-raELqqL~~erqeLe~qiq~L~~ELqrlk~e  166 (503)
                      .+..|.++...|+.++..++.+..++... +.+|..++.++.++..++..++.+|..++.+
T Consensus       178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~e  238 (325)
T PF08317_consen  178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEE  238 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444443322 2334444444444444444444444444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=98.44  E-value=9.4e-05  Score=76.88  Aligned_cols=39  Identities=13%  Similarity=0.208  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~  165 (503)
                      .|+.+...|.+.++.+...+.++....+.|+.++.+++.
T Consensus       160 ~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~  198 (325)
T PF08317_consen  160 LLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQ  198 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555555555555555555555555544443

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=98.43  E-value=6.9e-05  Score=81.15  Aligned_cols=31  Identities=10%  Similarity=0.115  Sum_probs=21.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGT   78 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~   78 (503)
                      +..++.++..+..++..|+.+..+|.+++..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~  122 (457)
T TIGR01000        92 NGNEENQKQLLEQQLDNLKDQKKSLDTLKQS  122 (457)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777777777777665544

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=98.43  E-value=0.00013  Score=70.57  Aligned_cols=31  Identities=10%  Similarity=0.198  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712          202 LESLQVMEKNYITMATEVEKLRAELMNAPNV  232 (503)
Q Consensus       202 ~eqlqemEk~L~sm~rEIekLraELekle~e  232 (503)
                      .....++..++..+..||+.|...|...+++
T Consensus       163 ~kK~~~~~~~~~~l~~ei~~L~~klkEKer~  193 (194)
T PF15619_consen  163 KKKHKEAQEEVKSLQEEIQRLNQKLKEKERE  193 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344555556666666666666666655443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.43  E-value=4.1e-05  Score=86.97  Aligned_cols=98  Identities=10%  Similarity=0.144  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          139 AQNLVVAREELIAKVHQLTQDLQRAHTDV----QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT  214 (503)
Q Consensus       139 LqqL~~erqeLe~qiq~L~~ELqrlk~el----qqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~s  214 (503)
                      +.++...+.+...+.+.|..+|..++.++    +++..+...|.+++.++..+-.++-.++..++++....++++.+-..
T Consensus       399 i~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~  478 (1200)
T KOG0964|consen  399 IEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKK  478 (1200)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444443333332    23444555556666666666666667777778888888888888888


Q ss_pred             HHHHHHHHHHHHHhcccccccc
Q 010712          215 MATEVEKLRAELMNAPNVDRRA  236 (503)
Q Consensus       215 m~rEIekLraELekle~el~~~  236 (503)
                      +...|+.++.+|...++.|..+
T Consensus       479 l~~~i~~~~~dl~~~~~~L~~~  500 (1200)
T KOG0964|consen  479 LRSLIANLEEDLSRAEKNLRAT  500 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888888888887654

>PRK01156 chromosome segregation protein; Provisional

Probab=98.42  E-value=6.3e-05  Score=87.75  Aligned_cols=11  Identities=9%  Similarity=0.084  Sum_probs=4.3

Q ss_pred             HHHHHhccccc
Q 010712          223 RAELMNAPNVD  233 (503)
Q Consensus       223 raELekle~el  233 (503)
                      ..+++++.+++
T Consensus       415 ~~~~~~l~~~i  425 (895)
T PRK01156        415 NVKLQDISSKV  425 (895)
T ss_pred             HHHHHHHHHHH
Confidence            33344444333

>PRK01156 chromosome segregation protein; Provisional

Probab=98.41  E-value=7.5e-05  Score=87.10  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 010712          206 QVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       206 qemEk~L~sm~rEIekLraELek  228 (503)
                      .++.+++..+..++..++..+..
T Consensus       419 ~~l~~~i~~l~~~i~~l~~~~~e  441 (895)
T PRK01156        419 QDISSKVSSLNQRIRALRENLDE  441 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444443333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=98.40  E-value=2.7e-05  Score=77.35  Aligned_cols=155  Identities=17%  Similarity=0.326  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHH-
Q 010712           61 EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEP----VKLEFQKS-  135 (503)
Q Consensus        61 EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~----Lk~ELeqL-  135 (503)
                      +|+.|..++.+|+..+...+..|..++.++.++...+..    ++.++.+|+.++..++.++.++..    ++..+..+ 
T Consensus        11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~----~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~   86 (239)
T COG1579          11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEA----LEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK   86 (239)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            455666666667666666666677777776666665533    333444555555555554443221    22222222 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          136 -KTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT  214 (503)
Q Consensus       136 -raELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~s  214 (503)
                       ..++..|..+.+.+..++..|+.+|..+..+++   .+..+|..++.++.+++..+..+++.++.   .+..+.+....
T Consensus        87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~---~l~~~i~~l~~~~~~~e~~~~e~~~~~e~---e~~~i~e~~~~  160 (239)
T COG1579          87 DERELRALNIEIQIAKERINSLEDELAELMEEIE---KLEKEIEDLKERLERLEKNLAEAEARLEE---EVAEIREEGQE  160 (239)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence             234555555555555555566655555544333   34555666666666655555554444332   33344444444


Q ss_pred             HHHHHHHHHHH
Q 010712          215 MATEVEKLRAE  225 (503)
Q Consensus       215 m~rEIekLraE  225 (503)
                      ...+.+.|.++
T Consensus       161 ~~~~~~~L~~~  171 (239)
T COG1579         161 LSSKREELKEK  171 (239)
T ss_pred             HHHHHHHHHHh
Confidence            44444444443

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=98.40  E-value=4.7e-05  Score=80.73  Aligned_cols=103  Identities=15%  Similarity=0.102  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010712          132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN  211 (503)
Q Consensus       132 LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~  211 (503)
                      +++++.++.....+++.|..+++.|..+|.+..--.++.+.+.+|.+.|-+||+++..+++.+.+.+.+.+-+.+..-+.
T Consensus       332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~s  411 (622)
T COG5185         332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKS  411 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Confidence            44444444444444444555555555555443333445566777788888888888888777777777766666666666


Q ss_pred             HHHHHHHHHHHHHHHHhcccccc
Q 010712          212 YITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       212 L~sm~rEIekLraELekle~el~  234 (503)
                      ++..-+.+..|..+|.-....+.
T Consensus       412 lek~~~~~~sl~~~i~~~~~~i~  434 (622)
T COG5185         412 LEKTLRQYDSLIQNITRSRSQIG  434 (622)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHh
Confidence            66666666666666555444343

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.40  E-value=0.00019  Score=72.15  Aligned_cols=50  Identities=18%  Similarity=0.337  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM  100 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~l  100 (503)
                      +...|.....+|..+..+...++.+++.|..++..+...+..++.++.++
T Consensus        29 ~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~   78 (265)
T COG3883          29 LSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQS   78 (265)
T ss_pred             hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33335555555555555555555555555555555555555555554433

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.40  E-value=4.7e-05  Score=86.97  Aligned_cols=124  Identities=17%  Similarity=0.298  Sum_probs=58.5

Q ss_pred             CCCCCChHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH--HHHHHHHHH
Q 010712           42 FDMMPPPEVMEQK--------IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS--ERELQMRNL  111 (503)
Q Consensus        42 ~~~~p~p~~LEqe--------Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka--e~E~el~eL  111 (503)
                      |-.|+++..|++-        |-..+.++..|..+.++|+..+..-...|..++++++.+...++.+..  .+...|+.|
T Consensus       155 Fa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l  234 (1072)
T KOG0979|consen  155 FARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELL  234 (1072)
T ss_pred             HHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445666665543        444455555555555555555555555555555555555554443322  122233333


Q ss_pred             HHHHH---------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          112 TEKIA---------KMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (503)
Q Consensus       112 ~eki~---------kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~  165 (503)
                      ..+..         ++.+.+...+.+++++..+..+++.+...+.+|+.++.++..++...+.
T Consensus       235 ~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~  297 (1072)
T KOG0979|consen  235 EKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQR  297 (1072)
T ss_pred             HHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHH
Confidence            22211         1112222334455555555555555555555555555555555544333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=98.39  E-value=0.00018  Score=69.63  Aligned_cols=16  Identities=25%  Similarity=0.343  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHhcc
Q 010712          215 MATEVEKLRAELMNAP  230 (503)
Q Consensus       215 m~rEIekLraELekle  230 (503)
                      +..++..|..||..+.
T Consensus       169 ~~~~~~~l~~ei~~L~  184 (194)
T PF15619_consen  169 AQEEVKSLQEEIQRLN  184 (194)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444443

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=98.39  E-value=0.00048  Score=70.49  Aligned_cols=169  Identities=16%  Similarity=0.159  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH--H--HHHHHHHHHHHHHHHHHHHHHHh-HHHHH
Q 010712           57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS--E--RELQMRNLTEKIAKMEAELKTAE-PVKLE  131 (503)
Q Consensus        57 ~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka--e--~E~el~eL~eki~kLEaEL~~le-~Lk~E  131 (503)
                      .+...|..|..++..|..++...+.+...+..++..|+..-..+.+  +  -+--.+.|..+|..++.+...+. .+..|
T Consensus        24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~E  103 (310)
T PF09755_consen   24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQE  103 (310)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444555555555555555555566666655555433332  2  22234567777777777666542 33333


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHH
Q 010712          132 ----FQKSKTEAQNLVVAREELIAKVHQLTQD-LQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYN-DHLESL  205 (503)
Q Consensus       132 ----LeqLraELqqL~~erqeLe~qiq~L~~E-Lqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~-el~eql  205 (503)
                          ...|...|.+|..+..+|+..+..=..- +.+|...+   ..+..++..++.++++|+.+.-.++..++ +...-+
T Consensus       104 EE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i---~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lv  180 (310)
T PF09755_consen  104 EEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKI---ERLEKEKSAKQEELERLRREKVDLENTLEQEQEALV  180 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                2233444445554444444443321111 12232222   22333333344444444443332222222 222234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 010712          206 QVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       206 qemEk~L~sm~rEIekLraELek  228 (503)
                      ..+.+.+..|..|...|+++|+.
T Consensus       181 N~L~Kqm~~l~~eKr~Lq~~l~~  203 (310)
T PF09755_consen  181 NRLWKQMDKLEAEKRRLQEKLEQ  203 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcc
Confidence            55666666666666666666554

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.38  E-value=0.00012  Score=83.50  Aligned_cols=19  Identities=21%  Similarity=0.149  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHhhHHH
Q 010712          175 SELESLRQEYHHCRGTYEY  193 (503)
Q Consensus       175 ~EIe~L~qELq~lR~ele~  193 (503)
                      ..|+....+.++++..|+.
T Consensus       436 ~~lEea~~eker~~e~l~e  454 (775)
T PF10174_consen  436 ETLEEALREKERLQERLEE  454 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=98.38  E-value=0.00012  Score=82.59  Aligned_cols=44  Identities=23%  Similarity=0.138  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT  214 (503)
Q Consensus       171 ~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~s  214 (503)
                      +.++.|+..+..|++++...++...........++.+++++...
T Consensus       497 e~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~  540 (980)
T KOG0980|consen  497 ESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDR  540 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence            34444444444455555544444444444444445554444443

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.38  E-value=1.9e-05  Score=89.74  Aligned_cols=157  Identities=18%  Similarity=0.164  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHH---HHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE---LQMRNLTEKIAKMEAELKTA  125 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E---~el~eL~eki~kLEaEL~~l  125 (503)
                      ..|+.+|+.+...|..|+.++..-.+.+..|+++|+.++.++.+|+.++.....+..   ....+|.+....++.--...
T Consensus       173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~y  252 (1195)
T KOG4643|consen  173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTY  252 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCcc
Confidence            567888888888888888888888888888888888888888888877765443221   11122211111111000001


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010712          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL  205 (503)
Q Consensus       126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eql  205 (503)
                      ..-..++.-++..+..|+..-..|..+.+.|+.+|++++.+.+. ..+..+|-.+++.+..++.+....+.+.+++.++.
T Consensus       253 kerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEn  331 (1195)
T KOG4643|consen  253 KERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEEN  331 (1195)
T ss_pred             chhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            12223333445555555555555555556666666655554433 33344444444444444444444444444444433


Q ss_pred             H
Q 010712          206 Q  206 (503)
Q Consensus       206 q  206 (503)
                      .
T Consensus       332 s  332 (1195)
T KOG4643|consen  332 S  332 (1195)
T ss_pred             H
Confidence            3

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.36  E-value=0.0001  Score=82.16  Aligned_cols=17  Identities=24%  Similarity=0.245  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHhcccc
Q 010712          216 ATEVEKLRAELMNAPNV  232 (503)
Q Consensus       216 ~rEIekLraELekle~e  232 (503)
                      +.-+..++++|+.+++.
T Consensus       290 eelVk~~qeeLd~lkqt  306 (1265)
T KOG0976|consen  290 EELVKELQEELDTLKQT  306 (1265)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33334444455544443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.35  E-value=3e-05  Score=86.30  Aligned_cols=55  Identities=20%  Similarity=0.165  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          179 SLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       179 ~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      .++.+++.+...++.+++...++.+.+.++.+....+...|++++..|..++..+
T Consensus       380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l  434 (569)
T PRK04778        380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL  434 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444555555555444433

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.34  E-value=0.00041  Score=69.78  Aligned_cols=76  Identities=13%  Similarity=0.208  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK  123 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~  123 (503)
                      +..-+.+|..++.+++.++.+++.|..++..+..++..++.++..++..|..++.+++.--+.+.++-..|+..++
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR  108 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR  108 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667778888888888888888888888888877888777777777777765555333333333333333444433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.34  E-value=0.0001  Score=82.07  Aligned_cols=37  Identities=14%  Similarity=0.270  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHHHH
Q 010712           82 ELAAAQHELQILHGQIGGMK-SERELQMRNLTEKIAKM  118 (503)
Q Consensus        82 eLa~lq~EL~~L~~qL~~lk-ae~E~el~eL~eki~kL  118 (503)
                      +|..++.+|..+...|..+. ...+..+..+.++|+.|
T Consensus       257 ~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~L  294 (569)
T PRK04778        257 EIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQL  294 (569)
T ss_pred             HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            34444444444433333322 23333444444444443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.34  E-value=0.00016  Score=87.00  Aligned_cols=51  Identities=8%  Similarity=0.227  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      .+.|+++++.+...|+.+..+.+.++..+.....++..++.++..++.++.
T Consensus       602 ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~  652 (1201)
T PF12128_consen  602 EEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELK  652 (1201)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777776666666666665555555555555554444443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.33  E-value=0.00013  Score=87.94  Aligned_cols=30  Identities=13%  Similarity=0.267  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          202 LESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       202 ~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      ...++++++++..++..+..+...+.+++.
T Consensus       847 ~~~~~~le~~~~~~~~~~~~~~~~l~~l~~  876 (1201)
T PF12128_consen  847 KQRRKELEEELKALEEQLEQLEEQLRRLRD  876 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555554433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.33  E-value=0.00012  Score=81.86  Aligned_cols=14  Identities=14%  Similarity=0.029  Sum_probs=6.5

Q ss_pred             HHHHHHHHhccccc
Q 010712          220 EKLRAELMNAPNVD  233 (503)
Q Consensus       220 ekLraELekle~el  233 (503)
                      +.|..+-+.|.+.+
T Consensus       247 q~l~~e~e~L~~q~  260 (617)
T PF15070_consen  247 QQLASEKEELHKQL  260 (617)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444555443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=98.33  E-value=8.2e-05  Score=82.93  Aligned_cols=47  Identities=19%  Similarity=0.280  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q   96 (503)
                      .-+++++.+..+|+.|..+...+..++..++.++..+..++...+..
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~  371 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAE  371 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555544444444444444333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.32  E-value=0.00026  Score=79.99  Aligned_cols=101  Identities=23%  Similarity=0.249  Sum_probs=63.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH----------HHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS----------ERELQMRNLTEKIAK  117 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka----------e~E~el~eL~eki~k  117 (503)
                      +..|+.+|.....++.+...++.+|...+..|+.+.+.+..+...|+.+|...+.          ++|.+--.|++++..
T Consensus        36 i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~  115 (717)
T PF09730_consen   36 ILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSV  115 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            5667777777777777778888888888888877777777777777777765432          444444455555555


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010712          118 MEAELKTAEPVKLEFQKSKTEAQNLVVAREE  148 (503)
Q Consensus       118 LEaEL~~le~Lk~ELeqLraELqqL~~erqe  148 (503)
                      |+.--.+++.|+-||..+..|++-|+.++.+
T Consensus       116 Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee  146 (717)
T PF09730_consen  116 LKQSQVEFEGLKHEIKRLEEEIELLNSQLEE  146 (717)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444455555555555554444444333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=98.32  E-value=1.1e-07  Score=108.18  Aligned_cols=70  Identities=16%  Similarity=0.167  Sum_probs=0.0

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          162 RAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       162 rlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      .+..+++++..++.+|+.+++++..++.++..+...++.+..++..+++.+..+..+.+.|..+.+.++.
T Consensus       350 ~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e  419 (713)
T PF05622_consen  350 MLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRE  419 (713)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555566667777777777777776666666666666666666666666666666666555543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]

Probab=98.32  E-value=9.9e-06  Score=91.95  Aligned_cols=46  Identities=20%  Similarity=0.397  Sum_probs=20.1

Q ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010712          312 GPGYEASKGPGYDASKAPS-YDPTKGPSYDPAKGPGYDPTKGPGYDAQK  359 (503)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~y~~~~~~~y~~~~~p~y~~~~  359 (503)
                      ++.|+ -+.++|+..+.+. ...|+.|.|++ ++|.++-+++|+|+.++
T Consensus       743 ~~sYg-~~~~~~g~~~~~~~~~Gs~tp~~~s-~tpl~~~s~tp~~~~~~  789 (1024)
T KOG1999|consen  743 TSSYG-ERTPGYGRVTPARYGMGSSTPMYGS-NTPLWGGSRTPARDGGA  789 (1024)
T ss_pred             ccccc-cccccccccCccccCCCCcCccCCC-CCCCCCcccCccccCCC
Confidence            33444 3455555555444 24444455543 34444333444333333

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.31  E-value=0.00014  Score=88.00  Aligned_cols=50  Identities=18%  Similarity=0.249  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM  100 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~l  100 (503)
                      |.++.......|+.|..+..++..++..|+.+|..++.++....+.+..+
T Consensus      1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l 1283 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKL 1283 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455555555555555555555555555554444444444433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=98.31  E-value=0.00027  Score=72.27  Aligned_cols=44  Identities=25%  Similarity=0.302  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 010712          176 ELESLRQEYHHCRGTYEYEKKF-YNDHLESLQVMEKNYITMATEV  219 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~-~~el~eqlqemEk~L~sm~rEI  219 (503)
                      +++.|+.|..+++..|+.++.. +..+.+++..|+.+...|+..|
T Consensus       157 ~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l  201 (310)
T PF09755_consen  157 ELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKL  201 (310)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444443322 2333344444444444444433

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.30  E-value=0.00013  Score=88.66  Aligned_cols=51  Identities=14%  Similarity=0.108  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL  226 (503)
                      .++++.++|+.++.+++.+.+.+..+.+++.++.+.+..+..++......+
T Consensus       922 ~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~  972 (1353)
T TIGR02680       922 MVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATL  972 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666666666666666666666666666666666664443333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.28  E-value=0.00032  Score=80.21  Aligned_cols=43  Identities=16%  Similarity=0.162  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L   93 (503)
                      |+.+++.+.++|+.+...+.+|+.....|..+++.+..++...
T Consensus       413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~  455 (1195)
T KOG4643|consen  413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTV  455 (1195)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555444444444444444444444443333

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=98.27  E-value=0.00061  Score=68.43  Aligned_cols=42  Identities=31%  Similarity=0.299  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           83 LAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT  124 (503)
Q Consensus        83 La~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~  124 (503)
                      |+.++.+|+..+...+...+.++.++..|..+|.+..+|+.-
T Consensus        65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~  106 (258)
T PF15397_consen   65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNF  106 (258)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444445555555555555555443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=98.27  E-value=0.00023  Score=80.42  Aligned_cols=53  Identities=23%  Similarity=0.112  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 010712          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLE----SLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       174 ~~EIe~L~qELq~lR~ele~ekk~~~el~e----qlqemEk~L~sm~rEIekLraEL  226 (503)
                      ...++.+++|+..+-.+++.++..+..+.+    ++..++..+....++...+..++
T Consensus       493 ~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~  549 (980)
T KOG0980|consen  493 AKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE  549 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            334566666666666666666655443333    34444445555555555555444

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=98.26  E-value=4.8e-05  Score=77.80  Aligned_cols=39  Identities=26%  Similarity=0.425  Sum_probs=28.2

Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           60 VEM-QKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        60 ~EI-q~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      .+| +.|..+|+.|..+...|.++|.....+|..|+.++.
T Consensus        82 A~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~  121 (306)
T PF04849_consen   82 ARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELS  121 (306)
T ss_pred             HHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344 667777777877777888888777777777777663

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=98.26  E-value=0.00037  Score=77.55  Aligned_cols=50  Identities=12%  Similarity=0.251  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      ..+++.|+....+|+.+..++..|...-..-+.++..++...+.+++.+.
T Consensus       104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll  153 (560)
T PF06160_consen  104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELL  153 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555555555555555555555543

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=98.26  E-value=0.00015  Score=79.08  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 010712           72 LAATHGTLRQELAAAQHELQILH   94 (503)
Q Consensus        72 La~e~~~LrqeLa~lq~EL~~L~   94 (503)
                      |..++..++++|..++.++...+
T Consensus       166 l~~ql~~~~~~L~~ae~~l~~f~  188 (498)
T TIGR03007       166 IDEQIKTYEKKLEAAENRLKAFK  188 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555544

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.26  E-value=0.00024  Score=86.08  Aligned_cols=152  Identities=20%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-------h--HHHHHHHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM-------K--SERELQMRNLTEKIAKMEAE  121 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~l-------k--ae~E~el~eL~eki~kLEaE  121 (503)
                      |-.+.+....++.-+..++.+|..++..+.+.++.++..|...+..-...       .  -....+|..|.+--..|.++
T Consensus      1158 LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee 1237 (1822)
T KOG4674|consen 1158 LRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREE 1237 (1822)
T ss_pred             HHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHH
Confidence            33444444444444555555555555555555555554444444332110       0  01122333333333333333


Q ss_pred             HH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhh------------HHHHHHHH
Q 010712          122 LK----TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ-------RAHTDVQQI------------PALLSELE  178 (503)
Q Consensus       122 L~----~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELq-------rlk~elqqi------------~~l~~EIe  178 (503)
                      +.    ++..|+.+|..++.++..++....++..+++..+.++.       +.+...+.|            ..+..+|.
T Consensus      1238 ~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~ 1317 (1822)
T KOG4674|consen 1238 NEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEIS 1317 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            32    34455555555555555555555555555544444444       333332222            33444455


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHH
Q 010712          179 SLRQEYHHCRGTYEYEKKFYNDHL  202 (503)
Q Consensus       179 ~L~qELq~lR~ele~ekk~~~el~  202 (503)
                      .|+.|+...+..++.+++.+..++
T Consensus      1318 ~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1318 RLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555544444444444444444

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.25  E-value=0.00038  Score=77.27  Aligned_cols=26  Identities=19%  Similarity=0.266  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          205 LQVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       205 lqemEk~L~sm~rEIekLraELekle  230 (503)
                      +.+|+..+..++-|.++|..+|...+
T Consensus       294 ~~~l~~~~~~LELeN~~l~tkL~rwE  319 (716)
T KOG4593|consen  294 LEKLQSTLLGLELENEDLLTKLQRWE  319 (716)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            33444444445555555555555443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.25  E-value=0.0001  Score=85.55  Aligned_cols=32  Identities=16%  Similarity=0.229  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQH---VEMQKLATENQRLAATHGTLR   80 (503)
Q Consensus        49 ~~LEqeIe~~~---~EIq~Le~enqrLa~e~~~Lr   80 (503)
                      ..++++.....   .....|+....++..+...|+
T Consensus       451 ~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~  485 (1317)
T KOG0612|consen  451 EKLDEKCQAVAELEEMDKELEETIEKLKSEESELQ  485 (1317)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444443333   344445544455544444444

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.25  E-value=0.00015  Score=83.00  Aligned_cols=27  Identities=15%  Similarity=0.329  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           53 QKIASQHVEMQKLATENQRLAATHGTL   79 (503)
Q Consensus        53 qeIe~~~~EIq~Le~enqrLa~e~~~L   79 (503)
                      +.++.....|+.|+.+..+|..+++.+
T Consensus       195 ~~~~~~~~~l~~L~~~~~~l~kdVE~~  221 (1072)
T KOG0979|consen  195 DKLTTKTEKLNRLEDEIDKLEKDVERV  221 (1072)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.25  E-value=0.00028  Score=79.84  Aligned_cols=148  Identities=18%  Similarity=0.216  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccchHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           78 TLRQELAAAQHELQILHGQIGGMKSERELQM---RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVH  154 (503)
Q Consensus        78 ~LrqeLa~lq~EL~~L~~qL~~lkae~E~el---~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq  154 (503)
                      .+..+|..++.+|..++..+...+++.+.-.   .+|.+....++.+   ...|+.||.++|..-..+.....+|+.+.-
T Consensus        31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~---~~~lr~e~ke~K~rE~rll~dyselEeENi  107 (717)
T PF09730_consen   31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELE---RKRLREEIKEYKFREARLLQDYSELEEENI  107 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3444455555555555555544444333221   2222222222222   223555555555555555555666666665


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          155 QLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       155 ~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      .|++++..|+.-.-+.+.++-||..|..|++-++..++.+.+.......++.+.-+.|+.-......|++||+.
T Consensus       108 slQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~  181 (717)
T PF09730_consen  108 SLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ  181 (717)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66555555554433445555555555555555555555555544444444444333333333333456666665

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=98.25  E-value=0.0002  Score=75.60  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAA   74 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~   74 (503)
                      .++.++..+..++.+|..+..+|..
T Consensus        78 ~~~~~l~~l~~~~~~l~a~~~~l~~  102 (423)
T TIGR01843        78 DVEADAAELESQVLRLEAEVARLRA  102 (423)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=98.25  E-value=0.00031  Score=72.71  Aligned_cols=64  Identities=20%  Similarity=0.201  Sum_probs=48.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcccc
Q 010712          169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM----ATEVEKLRAELMNAPNV  232 (503)
Q Consensus       169 qi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm----~rEIekLraELekle~e  232 (503)
                      ++...+.++++++.+++.++..|+..+.++.++..+++++++.+...    ..||.+|++++..+++.
T Consensus       219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l  286 (312)
T smart00787      219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL  286 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            44556666777777777777777777777777777777777766654    78899999999888775

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=0.00024  Score=76.71  Aligned_cols=53  Identities=25%  Similarity=0.307  Sum_probs=29.1

Q ss_pred             ChHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712           47 PPEVMEQKIASQHVEMQK--------------LATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~--------------Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~   99 (503)
                      .++.|.++|+.+..|+..              |..+...|+.++++|+.+++.++.+|+.++..+.+
T Consensus         9 ~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q   75 (772)
T KOG0999|consen    9 EVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQ   75 (772)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555554433              22333445555566666666666667666666654

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.24  E-value=0.00034  Score=78.37  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        56 e~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      ..+..+++.|..++..|..+.......+..+...|..|+.++
T Consensus        25 a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~   66 (617)
T PF15070_consen   25 AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQM   66 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333444444444444433333334444444444444443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=98.23  E-value=7.6e-05  Score=77.21  Aligned_cols=26  Identities=19%  Similarity=0.310  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010712          107 QMRNLTEKIAKMEAELKTAEPVKLEF  132 (503)
Q Consensus       107 el~eL~eki~kLEaEL~~le~Lk~EL  132 (503)
                      -+..|.++...|+.|+..+..+..++
T Consensus       173 ~~~~l~~~~~~L~~e~~~L~~~~~e~  198 (312)
T smart00787      173 IKPKLRDRKDALEEELRQLKQLEDEL  198 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            33444445555555555554444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=98.22  E-value=0.00032  Score=77.35  Aligned_cols=55  Identities=27%  Similarity=0.343  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhccchH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAA--AQHELQILHGQIGGMKS  102 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~--lq~EL~~L~~qL~~lka  102 (503)
                      .+..-|+|..++.+++.+..++..|..++..|+.+|+.  .+.+|....+.|..+.+
T Consensus       404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~  460 (961)
T KOG4673|consen  404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMA  460 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            45566777777777777777777777777777777764  23455555555555444

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=98.22  E-value=0.00023  Score=75.16  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010712           59 HVEMQKLATENQRLAATHGTL   79 (503)
Q Consensus        59 ~~EIq~Le~enqrLa~e~~~L   79 (503)
                      ..++..|+.+..++..++..|
T Consensus        80 ~~~l~~l~~~~~~l~a~~~~l  100 (423)
T TIGR01843        80 EADAAELESQVLRLEAEVARL  100 (423)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=98.22  E-value=0.00015  Score=65.79  Aligned_cols=49  Identities=27%  Similarity=0.260  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          116 AKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (503)
Q Consensus       116 ~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk  164 (503)
                      .+.+.||......-.+|..++.++..+...+.+|..+++.....|...+
T Consensus        45 ~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e   93 (132)
T PF07926_consen   45 QKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESE   93 (132)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444454444444455555566666655555555555555555554433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=98.21  E-value=8.7e-05  Score=82.54  Aligned_cols=11  Identities=27%  Similarity=0.447  Sum_probs=4.2

Q ss_pred             HHHHHHHHHHH
Q 010712          173 LLSELESLRQE  183 (503)
Q Consensus       173 l~~EIe~L~qE  183 (503)
                      +..+|+.+...
T Consensus       349 l~~~l~~l~~~  359 (560)
T PF06160_consen  349 LEKQLKELEKR  359 (560)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=0.00057  Score=76.71  Aligned_cols=64  Identities=14%  Similarity=0.061  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR  235 (503)
Q Consensus       172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~  235 (503)
                      ..+..+.++.+.+..|+.+++...+.+.++..++.+.+.++..+......|+.|++.++..+.+
T Consensus       556 ~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~  619 (698)
T KOG0978|consen  556 MLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER  619 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555556666666666666666666666666666666655555556666655555543

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=98.20  E-value=0.00046  Score=70.70  Aligned_cols=13  Identities=38%  Similarity=0.601  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHH
Q 010712          109 RNLTEKIAKMEAE  121 (503)
Q Consensus       109 ~eL~eki~kLEaE  121 (503)
                      ..|+.|++.|+.|
T Consensus       163 e~Lq~Klk~LEeE  175 (306)
T PF04849_consen  163 EALQEKLKSLEEE  175 (306)
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=98.20  E-value=0.00076  Score=68.43  Aligned_cols=103  Identities=15%  Similarity=0.215  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ----IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE  203 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq----i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e  203 (503)
                      |.-++..++...+-|...+...+.++..|+.++...+..+.+    ++.+..++...+..+..++..+..++.++.....
T Consensus       135 mn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~  214 (305)
T PF14915_consen  135 MNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIG  214 (305)
T ss_pred             hcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            334455555555556666666666666666666554443322    2333444444445555555555555555555444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          204 SLQVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraELekle  230 (503)
                      .-..+++.|..+..|-.=|+..|+.+.
T Consensus       215 Kqes~eERL~QlqsEN~LLrQQLddA~  241 (305)
T PF14915_consen  215 KQESLEERLSQLQSENMLLRQQLDDAH  241 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555554443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=98.19  E-value=0.00013  Score=83.96  Aligned_cols=49  Identities=8%  Similarity=0.077  Sum_probs=32.5

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       186 ~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      .+...++..+..+.++.++....|+.+.++.+.|.+|...|++|+.+..
T Consensus      1588 ~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1588 GADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555566666666777777777777778888887777766543

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.17  E-value=0.00046  Score=72.69  Aligned_cols=52  Identities=19%  Similarity=0.195  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~   99 (503)
                      -.+++.++..++.+++.|+.+-.-..+....++++...+.++...|++++.+
T Consensus       217 r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~re  268 (502)
T KOG0982|consen  217 RIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRRE  268 (502)
T ss_pred             hhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            3566777777777777777655555556777888888888887777777654

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=98.17  E-value=8.1e-05  Score=82.30  Aligned_cols=38  Identities=13%  Similarity=0.279  Sum_probs=26.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAA   85 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~   85 (503)
                      ...||++|.....++..++..|..|...++-+..+|..
T Consensus        93 ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~q  130 (916)
T KOG0249|consen   93 NDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQ  130 (916)
T ss_pred             hHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHh
Confidence            46677777777777777777777777666666555543

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.17  E-value=0.00029  Score=82.00  Aligned_cols=17  Identities=18%  Similarity=0.309  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHhccc
Q 010712          215 MATEVEKLRAELMNAPN  231 (503)
Q Consensus       215 m~rEIekLraELekle~  231 (503)
                      ++++++-+..+++.+.+
T Consensus       672 ~e~~lk~~q~~~eq~~~  688 (1317)
T KOG0612|consen  672 LERKLKMLQNELEQENA  688 (1317)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444433

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=0.0007  Score=73.24  Aligned_cols=57  Identities=21%  Similarity=0.221  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HHHHHHHhc
Q 010712          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESL----QVMEKNYITMATEVE---KLRAELMNA  229 (503)
Q Consensus       173 l~~EIe~L~qELq~lR~ele~ekk~~~el~eql----qemEk~L~sm~rEIe---kLraELekl  229 (503)
                      .+-|.+.|+.|+.+++.+++.++..+++.....    +-||+.|..+..|.+   .|+.||+..
T Consensus       192 sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~  255 (772)
T KOG0999|consen  192 SQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQY  255 (772)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            344566677777777777777666555433211    234445555554443   344555443

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=98.17  E-value=0.00026  Score=75.31  Aligned_cols=128  Identities=13%  Similarity=0.090  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 010712          106 LQMRNLTEKIAKMEAELKTAEP----VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLR  181 (503)
Q Consensus       106 ~el~eL~eki~kLEaEL~~le~----Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~  181 (503)
                      ..++.|.++...|+.+...++.    |+...+..-..+++|+.++...+.+++.|+..+..|+.++.+-.--..+.+.+.
T Consensus       295 ~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn  374 (622)
T COG5185         295 QKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMN  374 (622)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHH
Confidence            3444444444444444433322    222222233335566666666666666666666655555444333345566677


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       182 qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      +|-++|-.+|+..+-+.+++.+.+.+.+-+.+...++++++-.++..+..++
T Consensus       375 ~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i  426 (622)
T COG5185         375 QEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNI  426 (622)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777777777777777777777777676666677776666666665554

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=98.16  E-value=0.00084  Score=68.13  Aligned_cols=116  Identities=15%  Similarity=0.230  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH---
Q 010712           50 VMEQKIASQHVEMQKLATENQ----RLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL---  122 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enq----rLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL---  122 (503)
                      .|..+|..+.-||..+..+++    +...+++.+++..+.++..|..-...|.+.......++..|.+.-..|..+|   
T Consensus         3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~E   82 (305)
T PF14915_consen    3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKE   82 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHh
Confidence            477888888888888776654    4566777788888888877776666666655666677777777665555444   


Q ss_pred             -HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          123 -KTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (503)
Q Consensus       123 -~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~  165 (503)
                       ...+.|..||+..+.-|..+..+..+.......|+-.+++.+.
T Consensus        83 Kq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rd  126 (305)
T PF14915_consen   83 KQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARD  126 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhh
Confidence             3456788888777776666555555444444444444444433

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=98.16  E-value=0.00069  Score=64.89  Aligned_cols=174  Identities=19%  Similarity=0.186  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH-------
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT-------  124 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~-------  124 (503)
                      +-.+..++.+|+.|+.+..+.+..+..+.++|..+.+.-......+..    ++.....+.+++..++.+++.       
T Consensus         3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv----~enr~~kdEE~~e~~e~qLkEAk~iaE~   78 (205)
T KOG1003|consen    3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKV----IENRAQKLEEKMEAQEAQLKEAKHIAEK   78 (205)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777777777777766666666666554433322222211    111222233333333333322       


Q ss_pred             ----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHHHHh
Q 010712          125 ----AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ-----------IPALLSELESLRQEYHHCRG  189 (503)
Q Consensus       125 ----le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq-----------i~~l~~EIe~L~qELq~lR~  189 (503)
                          .+.+-..|.-+..+|.........-+.++.+|..++..+.+.+..           ......+|..+...|.....
T Consensus        79 adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~  158 (205)
T KOG1003|consen   79 ADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAET  158 (205)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence                222222333344444444444444444444554444433333222           22333444444444444444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          190 TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       190 ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      .-+...+.+..+.+.+.+++..+..+..+...+..+|+.+
T Consensus       159 rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~  198 (205)
T KOG1003|consen  159 RAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET  198 (205)
T ss_pred             hHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            4444555555666666666666666666666666666554

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.15  E-value=0.00056  Score=63.15  Aligned_cols=28  Identities=11%  Similarity=0.152  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          200 DHLESLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       200 el~eqlqemEk~L~sm~rEIekLraELe  227 (503)
                      .+..+++.++.....+++.++.|...+.
T Consensus       112 ~~eRkv~~le~~~~~~E~k~eel~~k~~  139 (143)
T PF12718_consen  112 HFERKVKALEQERDQWEEKYEELEEKYK  139 (143)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=98.15  E-value=0.00046  Score=68.31  Aligned_cols=20  Identities=25%  Similarity=0.310  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 010712          210 KNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       210 k~L~sm~rEIekLraELekl  229 (503)
                      +.++.|..|...|+.||+-.
T Consensus       164 esvqRLkdEardlrqelavr  183 (333)
T KOG1853|consen  164 ESVQRLKDEARDLRQELAVR  183 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444555555566666543

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=98.14  E-value=0.0013  Score=64.00  Aligned_cols=39  Identities=13%  Similarity=0.296  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010712          107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVA  145 (503)
Q Consensus       107 el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~e  145 (503)
                      ++.+|..++...+.+...+..++..+..+..++..+.-+
T Consensus        70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e  108 (201)
T PF13851_consen   70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE  108 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444433333333333333333333333333

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=98.14  E-value=0.00028  Score=74.02  Aligned_cols=100  Identities=20%  Similarity=0.244  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh-----------
Q 010712          106 LQMRNLTEKIAKMEAELK----TAEPVKLEFQKSKTEAQNLV-VAREELIAKVHQLTQDLQRAHTDVQQ-----------  169 (503)
Q Consensus       106 ~el~eL~eki~kLEaEL~----~le~Lk~ELeqLraELqqL~-~erqeLe~qiq~L~~ELqrlk~elqq-----------  169 (503)
                      -.+..|..+|.+++++-.    .++.|+.|..++...+++-+ .....|-+++++|+++..-|+..+.+           
T Consensus       158 f~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdi  237 (552)
T KOG2129|consen  158 FFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDI  237 (552)
T ss_pred             HHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhh
Confidence            345666777777765322    12444444444333332211 22233444445554444433333221           


Q ss_pred             --h--------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010712          170 --I--------PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL  205 (503)
Q Consensus       170 --i--------~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eql  205 (503)
                        +        ..++.-|+.|+.|++++|..+...++.+.+...++
T Consensus       238 a~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy  283 (552)
T KOG2129|consen  238 AKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQY  283 (552)
T ss_pred             hcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1        23344578888888888887777766665544443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.13  E-value=0.00042  Score=79.87  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           65 LATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        65 Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      |+.+++-+..++..++..|...+.||+.+...|.
T Consensus       688 le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~  721 (1141)
T KOG0018|consen  688 LEMRLKYSKLDLEQLKRSLEQNELELQRTESEID  721 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444555555555555555555554

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.13  E-value=0.00058  Score=83.17  Aligned_cols=37  Identities=30%  Similarity=0.386  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELA   84 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa   84 (503)
                      +..|+.+|..+..+|..+..++..|...+..|..+..
T Consensus       744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~  780 (1353)
T TIGR02680       744 IAELDARLAAVDDELAELARELRALGARQRALADELA  780 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999988888888888777777644

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=98.12  E-value=0.00073  Score=74.25  Aligned_cols=24  Identities=13%  Similarity=0.055  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHhccccccc
Q 010712          212 YITMATEVEKLRAELMNAPNVDRR  235 (503)
Q Consensus       212 L~sm~rEIekLraELekle~el~~  235 (503)
                      +..++++++.+..+|++++..|..
T Consensus       319 I~~le~~l~~~~~~leel~~kL~~  342 (629)
T KOG0963|consen  319 ISALEKELKAKISELEELKEKLNS  342 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445677777777777777776643

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=98.12  E-value=0.00043  Score=79.47  Aligned_cols=27  Identities=22%  Similarity=0.225  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712           70 QRLAATHGTLRQELAAAQHELQILHGQ   96 (503)
Q Consensus        70 qrLa~e~~~LrqeLa~lq~EL~~L~~q   96 (503)
                      +=|..++..++++|+.++.+++..+.+
T Consensus       197 ~~L~~ql~~l~~~l~~aE~~l~~fk~~  223 (754)
T TIGR01005       197 DFLAPEIADLSKQSRDAEAEVAAYRAQ  223 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666655555443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=98.11  E-value=0.00012  Score=73.18  Aligned_cols=60  Identities=18%  Similarity=0.283  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          172 ALLSELESLRQEYHHCRGTYEYEKKFYN-------------------------DHLESLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       172 ~l~~EIe~L~qELq~lR~ele~ekk~~~-------------------------el~eqlqemEk~L~sm~rEIekLraEL  226 (503)
                      ..+..|+.|.+||.+++.+|+..+....                         .....+.++.+....-..|..+|++||
T Consensus       106 s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkrle~e~  185 (307)
T PF10481_consen  106 SCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKRLEAEV  185 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence            3445566666666666666555443321                         122345566666655566666777777


Q ss_pred             Hhccc
Q 010712          227 MNAPN  231 (503)
Q Consensus       227 ekle~  231 (503)
                      ..|..
T Consensus       186 k~lq~  190 (307)
T PF10481_consen  186 KALQA  190 (307)
T ss_pred             HHHhc
Confidence            76654

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.10  E-value=0.00034  Score=64.57  Aligned_cols=17  Identities=29%  Similarity=0.468  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010712          105 ELQMRNLTEKIAKMEAE  121 (503)
Q Consensus       105 E~el~eL~eki~kLEaE  121 (503)
                      +.+|..|..++..++.+
T Consensus        34 E~EI~sL~~K~~~lE~e   50 (143)
T PF12718_consen   34 EQEITSLQKKNQQLEEE   50 (143)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=0.0005  Score=77.22  Aligned_cols=49  Identities=18%  Similarity=0.053  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      +..++.++.+.+-++.+......+..+++.+++....++.+.+.|+.++
T Consensus       646 ~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~v  694 (970)
T KOG0946|consen  646 QLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEV  694 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555555555555555555555555555444

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=98.09  E-value=0.0013  Score=64.32  Aligned_cols=51  Identities=22%  Similarity=0.252  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~   99 (503)
                      ..|++.|......|..+.....++......|+.++..+..++..+..+...
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~   76 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAEL   76 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777888888777777777777777777777888777777777766543

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=98.08  E-value=0.0012  Score=72.68  Aligned_cols=97  Identities=21%  Similarity=0.216  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh---hH-------HHHHHHHHHHHHHHHHHhhHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV--QQ---IP-------ALLSELESLRQEYHHCRGTYEYEK  195 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~el--qq---i~-------~l~~EIe~L~qELq~lR~ele~ek  195 (503)
                      ..+|+..+-.+|...+..+..|+.++..|..++.......  .+   +.       ....+|..|..++++++..+.   
T Consensus       233 k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~---  309 (629)
T KOG0963|consen  233 KAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV---  309 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---
Confidence            3355666777788888888888888888888876443322  21   12       223345555555555444433   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          196 KFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       196 k~~~el~eqlqemEk~L~sm~rEIekLraELe  227 (503)
                      +..+.+..+++++++++.+...+|++|+.+|.
T Consensus       310 ~e~e~~~~qI~~le~~l~~~~~~leel~~kL~  341 (629)
T KOG0963|consen  310 EEREKHKAQISALEKELKAKISELEELKEKLN  341 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            23455566777777777777777777777664

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=98.08  E-value=0.00014  Score=82.99  Aligned_cols=116  Identities=23%  Similarity=0.341  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch---HHHHHHHHHHHHHHHHHHHHHH---
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK---SERELQMRNLTEKIAKMEAELK---  123 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lk---ae~E~el~eL~eki~kLEaEL~---  123 (503)
                      .++++++.+..+...|+..+.++..+++.++.+|...+..|..|+.+|..++   ...+.+++...+....++..+.   
T Consensus       593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e  672 (769)
T PF05911_consen  593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLE  672 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            3455555555555555555555555555555555555555555555554322   1333333333333333333221   


Q ss_pred             -HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          124 -TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (503)
Q Consensus       124 -~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~  165 (503)
                       ++..+...+..|..||++-+..-.++..+..+|+.+|.+...
T Consensus       673 ~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~  715 (769)
T PF05911_consen  673 AEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKK  715 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhc
Confidence             122344444444444444444444455555555555554443

The function of this family is unknown.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=98.08  E-value=0.0037  Score=61.09  Aligned_cols=56  Identities=18%  Similarity=0.210  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSER  104 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~  104 (503)
                      ..++..|.....++...+.++..|...+..+.........-+..++..|.++..+.
T Consensus         5 ~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~   60 (207)
T PF05010_consen    5 KDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEK   60 (207)
T ss_pred             HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666555555666666666665555555544455544444444433

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=98.07  E-value=0.0028  Score=60.80  Aligned_cols=51  Identities=22%  Similarity=0.299  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccch---HHHHHHHHHHHHHHHHHHHHHHH
Q 010712           74 ATHGTLRQELAAAQHELQILHGQIGGMK---SERELQMRNLTEKIAKMEAELKT  124 (503)
Q Consensus        74 ~e~~~LrqeLa~lq~EL~~L~~qL~~lk---ae~E~el~eL~eki~kLEaEL~~  124 (503)
                      ..+..|+.+|...+.++..+...+....   .+.+..++.|..+..+++..+..
T Consensus        11 rri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~   64 (205)
T KOG1003|consen   11 RRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEA   64 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHH
Confidence            3333344444444444444433333222   23444555555555555554443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=98.05  E-value=0.0013  Score=70.13  Aligned_cols=47  Identities=17%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      ||+. -.+..-|++|...|++-+..|..|+-.-..+...++.|+..+.
T Consensus       309 leed-maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~  355 (527)
T PF15066_consen  309 LEED-MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKIT  355 (527)
T ss_pred             cHHH-HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhh
Confidence            4444 3455667788888888777777776666666666666666553

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=98.05  E-value=0.002  Score=66.78  Aligned_cols=60  Identities=15%  Similarity=0.220  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      ..+.||+.+...+.+++.+....+...+.....+-+|-.+...+..+++.++..+++|++
T Consensus       241 tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~  300 (309)
T PF09728_consen  241 TFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK  300 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666655555555555555556666655666666666666666654

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=98.05  E-value=0.0012  Score=64.33  Aligned_cols=18  Identities=11%  Similarity=0.239  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHhcccc
Q 010712          215 MATEVEKLRAELMNAPNV  232 (503)
Q Consensus       215 m~rEIekLraELekle~e  232 (503)
                      +++.|..|...|++.+..
T Consensus       148 LEkKl~~l~~~lE~keaq  165 (201)
T PF13851_consen  148 LEKKLQALSEQLEKKEAQ  165 (201)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444443333

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.05  E-value=0.0006  Score=77.16  Aligned_cols=33  Identities=18%  Similarity=0.241  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQE   82 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrqe   82 (503)
                      .++.+|..+..+++.+..+...+..+++.++.+
T Consensus       213 ~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~  245 (650)
T TIGR03185       213 ALEAELKEQSEKYEDLAQEIAHLRNELEEAQRS  245 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444443333333333333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=98.05  E-value=0.0017  Score=70.35  Aligned_cols=27  Identities=4%  Similarity=0.148  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          207 VMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       207 emEk~L~sm~rEIekLraELekle~el  233 (503)
                      +...++...+.++..++++|+.++..+
T Consensus       288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l  314 (457)
T TIGR01000       288 KVKQEITDLNQKLLELESKIKSLKEDS  314 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555566666666655554444

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=98.04  E-value=0.0016  Score=65.53  Aligned_cols=111  Identities=12%  Similarity=0.132  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHH
Q 010712           55 IASQHVEMQKLATENQRLAATHGTLRQELAA----AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-TAEPVK  129 (503)
Q Consensus        55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~----lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~-~le~Lk  129 (503)
                      |..+..-...|...|..|..+|....+.-..    +=++-+.+...+..+......++..++..+.+.++.+. .+..|.
T Consensus         8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq   87 (258)
T PF15397_consen    8 LQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQ   87 (258)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4444444455666666666666555332111    11111122222222222222334444444444333222 344455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Q 010712          130 LEFQKSKTEAQNLVVAREELIA-----------KVHQLTQDLQRAHT  165 (503)
Q Consensus       130 ~ELeqLraELqqL~~erqeLe~-----------qiq~L~~ELqrlk~  165 (503)
                      .+++++.++|++.+.++.-|..           +|..|..+|+.++.
T Consensus        88 ~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~  134 (258)
T PF15397_consen   88 QQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKD  134 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555444433           44555555554443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=98.03  E-value=0.00052  Score=74.87  Aligned_cols=19  Identities=5%  Similarity=0.109  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 010712          210 KNYITMATEVEKLRAELMN  228 (503)
Q Consensus       210 k~L~sm~rEIekLraELek  228 (503)
                      .++..|+++++..+...+.
T Consensus       355 ~el~~L~Re~~~~~~~Y~~  373 (498)
T TIGR03007       355 AELTQLNRDYEVNKSNYEQ  373 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444443333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF13514 AAA_27: AAA domain

Probab=98.02  E-value=0.0011  Score=79.23  Aligned_cols=37  Identities=19%  Similarity=0.300  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           61 EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        61 EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      ++..+..+...+...+..+++++.....++..|-..+
T Consensus       737 ~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l  773 (1111)
T PF13514_consen  737 ELREALAEIRELRRRIEQMEADLAAFEEQVAALAERL  773 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3444444555555555555555555555555555444

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=98.00  E-value=0.0031  Score=62.76  Aligned_cols=50  Identities=12%  Similarity=0.020  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL  226 (503)
                      .++|-.-++.|..+.+..+.++--+.+++++.+++++.+++.++.+..-+
T Consensus       259 q~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav  308 (330)
T KOG2991|consen  259 QEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV  308 (330)
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333444444444444455555555555555555555555555444443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.99  E-value=1.3e-06  Score=99.38  Aligned_cols=81  Identities=16%  Similarity=0.163  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       148 eLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe  227 (503)
                      .+...+..|+.++.+...-..++..++.+|.+|+.++......++.+...+..+.+++..++.+...+..+++.|+..++
T Consensus       343 ~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~e  422 (713)
T PF05622_consen  343 VLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNE  422 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444433333334444444444444444444444443333444444444444444444444444444333


Q ss_pred             h
Q 010712          228 N  228 (503)
Q Consensus       228 k  228 (503)
                      .
T Consensus       423 e  423 (713)
T PF05622_consen  423 E  423 (713)
T ss_dssp             -
T ss_pred             H
Confidence            3

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=97.99  E-value=0.0054  Score=63.49  Aligned_cols=83  Identities=16%  Similarity=0.272  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHH
Q 010712          146 REELIAKVHQLTQDLQRAHTDVQQI----PALLSELESLRQEYHHCRGT--------------YEYEKKFYNDHLESLQV  207 (503)
Q Consensus       146 rqeLe~qiq~L~~ELqrlk~elqqi----~~l~~EIe~L~qELq~lR~e--------------le~ekk~~~el~eqlqe  207 (503)
                      +.+|..++..+..++..++.+++.+    +++..|.+..+..+++|-.+              |+.+--.+-.+.++++.
T Consensus       128 re~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q  207 (319)
T PF09789_consen  128 REDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQ  207 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444443322    23344444444444444444              33344455567778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 010712          208 MEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       208 mEk~L~sm~rEIekLraELek  228 (503)
                      ++++...+...|.|.+.-|+.
T Consensus       208 ~qeE~~l~k~~i~KYK~~le~  228 (319)
T PF09789_consen  208 LQEEKELLKQTINKYKSALER  228 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            888888888888888888883

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=97.98  E-value=0.0013  Score=63.66  Aligned_cols=56  Identities=29%  Similarity=0.506  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 010712          171 PALLSELESLRQEYHHCRG-------TYEYEKKFYNDHLESL----QVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       171 ~~l~~EIe~L~qELq~lR~-------ele~ekk~~~el~eql----qemEk~L~sm~rEIekLraEL  226 (503)
                      ..+..+++.|+.||...|.       .|+.++..-.+.++++    +.+..+.+.|-+....|..+|
T Consensus       134 ~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l  200 (202)
T PF06818_consen  134 GSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL  200 (202)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555555555554444       3444433333333332    234444555666666666554

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=97.98  E-value=0.0036  Score=63.13  Aligned_cols=21  Identities=14%  Similarity=0.276  Sum_probs=9.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHH
Q 010712           46 PPPEVMEQKIASQHVEMQKLA   66 (503)
Q Consensus        46 p~p~~LEqeIe~~~~EIq~Le   66 (503)
                      |+|..|+..|+....+++...
T Consensus        17 ~~~~~l~~~~e~~~~~L~~~~   37 (264)
T PF06008_consen   17 PAPYKLLSSIEDLTNQLRSYR   37 (264)
T ss_pred             hhHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444433

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=97.98  E-value=0.0024  Score=68.05  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=20.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRL   72 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrL   72 (503)
                      .+.+++++..+..||..|..+++++
T Consensus        89 ~Es~~~kl~RL~~Ev~EL~eEl~~~  113 (388)
T PF04912_consen   89 KESPEQKLQRLRREVEELKEELEKR  113 (388)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999998888776

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=97.98  E-value=0.0027  Score=64.02  Aligned_cols=18  Identities=11%  Similarity=0.340  Sum_probs=7.5

Q ss_pred             CCCCCChHHHHHHHHHHH
Q 010712           42 FDMMPPPEVMEQKIASQH   59 (503)
Q Consensus        42 ~~~~p~p~~LEqeIe~~~   59 (503)
                      ..++-.++.+-+++....
T Consensus        20 ~~l~~~~e~~~~~L~~~~   37 (264)
T PF06008_consen   20 YKLLSSIEDLTNQLRSYR   37 (264)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            344444444444444333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=97.98  E-value=0.00062  Score=73.69  Aligned_cols=52  Identities=13%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       178 e~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +.|+..++.++..+..+++....+.+.+..+.+.-.....+++.++.+|..+
T Consensus       378 S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei  429 (570)
T COG4477         378 SELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI  429 (570)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555555554444444455555554443

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=97.97  E-value=0.0012  Score=72.66  Aligned_cols=21  Identities=10%  Similarity=0.056  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010712          130 LEFQKSKTEAQNLVVAREELI  150 (503)
Q Consensus       130 ~ELeqLraELqqL~~erqeLe  150 (503)
                      ..++.++.++...+.+..+..
T Consensus       221 ~~l~l~~~~~~~~~~el~~Yk  241 (511)
T PF09787_consen  221 EQLELLKAEGESEEAELQQYK  241 (511)
T ss_pred             HHHHHHHHHhHHHHHHHHHHH
Confidence            334444444444444444443

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.0036  Score=70.50  Aligned_cols=65  Identities=17%  Similarity=0.211  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       170 i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      +.++...++.|+.++++....++.++..+.+....+..+..+...++.|+++|+.+|+.+.+...
T Consensus       561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~  625 (698)
T KOG0978|consen  561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES  625 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            56677778888888888888888888888888888888888888888888888888888776553

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.96  E-value=0.0019  Score=71.52  Aligned_cols=30  Identities=20%  Similarity=0.253  Sum_probs=21.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHG   77 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~   77 (503)
                      ++.||.++..+..|-..|..+...|..++.
T Consensus       411 va~lEkKvqa~~kERDalr~e~kslk~ela  440 (961)
T KOG4673|consen  411 VATLEKKVQALTKERDALRREQKSLKKELA  440 (961)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            467888888888777777777666655553

>PF13166 AAA_13: AAA domain

Probab=97.95  E-value=0.00097  Score=75.80  Aligned_cols=104  Identities=13%  Similarity=0.145  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010712          131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ--IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM  208 (503)
Q Consensus       131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq--i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqem  208 (503)
                      .+..+...++++...+.++...++.+..++..++..+..  +..+...|+.+..++..++.+++.+++.+..+...+..+
T Consensus       364 ~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  443 (712)
T PF13166_consen  364 DIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKI  443 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555544443322  223334444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          209 EKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       209 Ek~L~sm~rEIekLraELekle~el~  234 (503)
                      ++.+..++.++.....-++.+..+|+
T Consensus       444 ~~~i~~l~~~~~~~~~~~~~iN~~L~  469 (712)
T PF13166_consen  444 EKEIKELEAQLKNTEPAADRINEELK  469 (712)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            44444444444333333344444443

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=97.95  E-value=0.0012  Score=75.86  Aligned_cols=26  Identities=12%  Similarity=0.151  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccc
Q 010712           75 THGTLRQELAAAQHELQILHGQIGGM  100 (503)
Q Consensus        75 e~~~LrqeLa~lq~EL~~L~~qL~~l  100 (503)
                      ..+-|.++|..++++++..+.++.+.
T Consensus       195 a~~~L~~ql~~l~~~l~~aE~~l~~f  220 (754)
T TIGR01005       195 AADFLAPEIADLSKQSRDAEAEVAAY  220 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555554443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF13514 AAA_27: AAA domain

Probab=97.94  E-value=0.0029  Score=75.83  Aligned_cols=46  Identities=20%  Similarity=0.214  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010712          156 LTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDH  201 (503)
Q Consensus       156 L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el  201 (503)
                      |...+.+.+...+++..+..+|+.++.+++.++.+++..+..+..+
T Consensus       789 L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L  834 (1111)
T PF13514_consen  789 LRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAEL  834 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333344444455555555555555544444444433

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=97.94  E-value=0.0013  Score=70.50  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712           72 LAATHGTLRQELAAAQHELQILHGQ   96 (503)
Q Consensus        72 La~e~~~LrqeLa~lq~EL~~L~~q   96 (503)
                      |..++..++++|..++.+|+..+.+
T Consensus       176 l~~ql~~~~~~l~~ae~~l~~fr~~  200 (444)
T TIGR03017       176 FVQQIAALREDLARAQSKLSAYQQE  200 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555554443

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.94  E-value=0.0029  Score=74.33  Aligned_cols=32  Identities=25%  Similarity=0.386  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +.++.+.+.++++.+..+.+++++++.++.++
T Consensus       405 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~  436 (908)
T COG0419         405 LEEIQEELEELEKELEELERELEELEEEIKKL  436 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444433

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=97.94  E-value=0.0045  Score=64.08  Aligned_cols=69  Identities=23%  Similarity=0.270  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc---hHHHHHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM---KSERELQMRNLTEKIAKME  119 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~l---kae~E~el~eL~eki~kLE  119 (503)
                      .+++|+.+......|..++.++..++..++.....+..+.+.+..++...   +..++.-.++|+.....+.
T Consensus        20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk   91 (309)
T PF09728_consen   20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLK   91 (309)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36677777777777777777777777777666666666666555555432   2233444444444444443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=97.94  E-value=0.00062  Score=70.33  Aligned_cols=110  Identities=16%  Similarity=0.223  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010712           57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSK  136 (503)
Q Consensus        57 ~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLr  136 (503)
                      .+..-+.....+|.+|..++..|+++|..++-++.-|++.+...+...+..-  .......-+.-+..++.++.++.+++
T Consensus        69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~--~~~~~~ere~lV~qLEk~~~q~~qLe  146 (319)
T PF09789_consen   69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG--ARHFPHEREDLVEQLEKLREQIEQLE  146 (319)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc--ccccchHHHHHHHHHHHHHHHHHHHH
Confidence            3334445566778888888888888888888888888887765443211000  00000122223333445555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712          137 TEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ  168 (503)
Q Consensus       137 aELqqL~~erqeLe~qiq~L~~ELqrlk~elq  168 (503)
                      .+++.+..+.+++..+++......++|..++.
T Consensus       147 ~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn  178 (319)
T PF09789_consen  147 RDLQSLLDEKEELVTERDAYKCKAHRLNHELN  178 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555544

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=0.0066  Score=65.90  Aligned_cols=66  Identities=27%  Similarity=0.370  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH----------HHHHHHHHHHHHHHHHHHHHHH
Q 010712           59 HVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS----------ERELQMRNLTEKIAKMEAELKT  124 (503)
Q Consensus        59 ~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka----------e~E~el~eL~eki~kLEaEL~~  124 (503)
                      ..||...+.++++|++.+..|+.+|......+..++.+..++.+          .++..++.-.+++.+|+++|.+
T Consensus       330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkk  405 (654)
T KOG4809|consen  330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKK  405 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777788888888888887777777666666666554433          3444445555667777777654

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=97.93  E-value=0.0027  Score=66.36  Aligned_cols=28  Identities=29%  Similarity=0.312  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          202 LESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       202 ~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +..+...|.+|+=+++||..|+.||..+
T Consensus       511 EVLLRVKEsEiQYLKqEissLkDELQta  538 (593)
T KOG4807|consen  511 EVLLRVKESEIQYLKQEISSLKDELQTA  538 (593)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444445555555555555555443

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.92  E-value=0.00085  Score=75.46  Aligned_cols=18  Identities=11%  Similarity=0.154  Sum_probs=12.9

Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKL   65 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~L   65 (503)
                      ...||.+|+.+..||-+.
T Consensus       431 ~~~Le~elekLk~eilKA  448 (762)
T PLN03229        431 VRELEGEVEKLKEQILKA  448 (762)
T ss_pred             CccHHHHHHHHHHHHHhc
Confidence            456788888888777654

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=97.91  E-value=0.00026  Score=78.37  Aligned_cols=45  Identities=18%  Similarity=0.157  Sum_probs=21.0

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       186 ~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle  230 (503)
                      .+.++++.+....+.+++++.+|....+++..++++|+.+|+.|+
T Consensus       213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            333333344444444444455555555555555555555554443

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=97.91  E-value=0.0059  Score=58.09  Aligned_cols=169  Identities=17%  Similarity=0.211  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010712           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQ  133 (503)
Q Consensus        54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELe  133 (503)
                      -|..+.++|.+|+-+....+..+..|..+....+.-++.....-.....+...+.++|..++...+.   +..-|+++|+
T Consensus         5 ALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEt---RCslLEKQLe   81 (178)
T PF14073_consen    5 ALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAET---RCSLLEKQLE   81 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHH---HHHHHHHHHH
Confidence            3556677777777777666666666655554444333322111111111222223344444444333   3334556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI  213 (503)
Q Consensus       134 qLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~  213 (503)
                      -++.-+.....++..+..+-..|..+-.   .+...+..-...++.|..|+.+|...-.....++..+++.+++-+.+..
T Consensus        82 yMRkmv~~ae~er~~~le~q~~l~~e~~---~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRK  158 (178)
T PF14073_consen   82 YMRKMVESAEKERNAVLEQQVSLQRERQ---QDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRK  158 (178)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666655555544443333322211   1222233344557777777777777766667777777777776666665


Q ss_pred             HHHHHHHHHHHHHHh
Q 010712          214 TMATEVEKLRAELMN  228 (503)
Q Consensus       214 sm~rEIekLraELek  228 (503)
                      -+...-..|...|+.
T Consensus       159 lvQdkAaqLQt~lE~  173 (178)
T PF14073_consen  159 LVQDKAAQLQTGLET  173 (178)
T ss_pred             HHHHHHHHHHhhHHH
Confidence            555555666666553

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.90  E-value=0.0048  Score=68.76  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL  122 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL  122 (503)
                      ...+.+++..+....+|......+..+-+.++.++...+++++.....+..++.+++.++.++...+.+++.-+
T Consensus        94 r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~  167 (716)
T KOG4593|consen   94 RNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSL  167 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777788888777777766667777777777777777766666666666666666655555555555554433

>PRK11281 hypothetical protein; Provisional

Probab=97.89  E-value=0.0011  Score=78.59  Aligned_cols=28  Identities=11%  Similarity=0.099  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          194 EKKFYNDHLESLQVMEKNYITMATEVEK  221 (503)
Q Consensus       194 ekk~~~el~eqlqemEk~L~sm~rEIek  221 (503)
                      .++..+.+..+++.++..++.++..+.+
T Consensus       225 ~~~q~d~~~~~~~~~~~~~~~lq~~in~  252 (1113)
T PRK11281        225 LQKQRDYLTARIQRLEHQLQLLQEAINS  252 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444433

>TIGR00634 recN DNA repair protein RecN

Probab=97.88  E-value=0.0022  Score=71.51  Aligned_cols=43  Identities=16%  Similarity=0.054  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILH   94 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~   94 (503)
                      .+++..+..+++.+..+++++..+...+.++++.++.+|+.|+
T Consensus       160 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe  202 (563)
T TIGR00634       160 VKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE  202 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=97.88  E-value=0.0043  Score=61.07  Aligned_cols=48  Identities=10%  Similarity=0.145  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      .|++-|....+.|..+...+.++......++++++.++..+..+....
T Consensus        28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A   75 (219)
T TIGR02977        28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA   75 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555666666666666666666666666666666666655543

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=97.88  E-value=0.0015  Score=59.31  Aligned_cols=93  Identities=16%  Similarity=0.226  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010712           62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQN  141 (503)
Q Consensus        62 Iq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqq  141 (503)
                      +..|..+...+.........++..++.+|..............+.++..-       -..+..+..++.++..++.++..
T Consensus         5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~H-------a~~~~~L~~lr~e~~~~~~~~~~   77 (132)
T PF07926_consen    5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKH-------AEDIKELQQLREELQELQQEINE   77 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444433333344443322       22333445566666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010712          142 LVVAREELIAKVHQLTQDLQ  161 (503)
Q Consensus       142 L~~erqeLe~qiq~L~~ELq  161 (503)
                      ++..+......+...+....
T Consensus        78 l~~~~~~a~~~l~~~e~sw~   97 (132)
T PF07926_consen   78 LKAEAESAKAELEESEASWE   97 (132)
T ss_pred             HHHHHHHHHHHHHHHHHhHH
Confidence            66666555555555544443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.86  E-value=0.0044  Score=72.83  Aligned_cols=44  Identities=16%  Similarity=0.172  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       191 le~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      ++.++.........+.++...+..+.+++..+.++|++++.++.
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~  434 (908)
T COG0419         391 IQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIK  434 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444555566666666677777777777777666543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=97.86  E-value=0.001  Score=76.05  Aligned_cols=30  Identities=10%  Similarity=0.199  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          204 SLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      |.+.+.+.|..+..+|+++-.+|.++++.+
T Consensus       686 Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~  715 (717)
T PF10168_consen  686 QKRTIKEILKQQGEEIDELVKQIKNIKKIV  715 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455566666666777777777776665543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10698 phage shock protein PspA; Provisional

Probab=97.86  E-value=0.0038  Score=61.73  Aligned_cols=47  Identities=11%  Similarity=0.143  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q   96 (503)
                      .|++-|....+.+..+.....++..+...+++++..++.++..+..+
T Consensus        28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k   74 (222)
T PRK10698         28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK   74 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555555666666666655555544

>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]

Probab=97.85  E-value=0.0014  Score=73.53  Aligned_cols=52  Identities=15%  Similarity=0.139  Sum_probs=27.1

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712          182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR  235 (503)
Q Consensus       182 qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~  235 (503)
                      .++.-.+.+.+..+..+.+-..+.+++.+-  -++.|++.|+.|+++++...+.
T Consensus      1059 ~efAa~eaemdeik~~~~edrakqkei~k~--L~ehelenLrnEieklndkIkd 1110 (1424)
T KOG4572|consen 1059 DEFAAIEAEMDEIKDGKCEDRAKQKEIDKI--LKEHELENLRNEIEKLNDKIKD 1110 (1424)
T ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence            344444444444433333333333333222  3467778888888888777764

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=97.85  E-value=0.004  Score=60.44  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHH
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFYND  200 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~~e  200 (503)
                      .+..|+.++++|+.+|..++...++
T Consensus       132 ~~~~l~~e~erL~aeL~~er~~~e~  156 (202)
T PF06818_consen  132 ELGSLRREVERLRAELQRERQRREE  156 (202)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhHHH
Confidence            3677888888888887777665543

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=97.84  E-value=0.0021  Score=69.16  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           63 QKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        63 q~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      +.|...|..|..+.+.|.+++.....++..|..++
T Consensus        86 qsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hel  120 (596)
T KOG4360|consen   86 QSLLKANKALQEDNESLEEQVDAPWDRVVQLGHEL  120 (596)
T ss_pred             HHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhh
Confidence            56777777777777777777766666655555544

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=97.83  E-value=0.00091  Score=60.00  Aligned_cols=68  Identities=19%  Similarity=0.282  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE  194 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~e  194 (503)
                      .|..+|..+..|+..++.++..|+.+.+.+..+|-++..+...+.....++..|+.+++.++..++..
T Consensus        20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~   87 (120)
T PF12325_consen   20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL   87 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444455555555555555554444444444445555555555544444333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=97.82  E-value=0.0081  Score=57.04  Aligned_cols=30  Identities=7%  Similarity=0.027  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          204 SLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      .+....+.+..+.++|..|++.++.++.++
T Consensus       146 Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i  175 (177)
T PF13870_consen  146 DYDKTKEEVEELRKEIKELERKVEILEMRI  175 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444455555666666666666555443

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=97.82  E-value=0.0064  Score=57.72  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712          203 ESLQVMEKNYITMATEVEKLRA  224 (503)
Q Consensus       203 eqlqemEk~L~sm~rEIekLra  224 (503)
                      +.+.++++.+..+.+.++.+..
T Consensus       152 ~~~~~l~~~i~~l~rk~~~l~~  173 (177)
T PF13870_consen  152 EEVEELRKEIKELERKVEILEM  173 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444443

>KOG0260 consensus RNA polymerase II, large subunit [Transcription]

Probab=97.82  E-value=0.00058  Score=79.09  Aligned_cols=12  Identities=25%  Similarity=0.390  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q 010712           65 LATENQRLAATH   76 (503)
Q Consensus        65 Le~enqrLa~e~   76 (503)
                      |+.+-++|..+.
T Consensus       925 le~e~~~l~~dr  936 (1605)
T KOG0260|consen  925 LECEYKKLVRDR  936 (1605)
T ss_pred             HHHHHHhhhhhh
Confidence            333334443333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=97.82  E-value=0.0015  Score=74.72  Aligned_cols=27  Identities=7%  Similarity=0.140  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          200 DHLESLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       200 el~eqlqemEk~L~sm~rEIekLraEL  226 (503)
                      .+++-|+++-+++..|-++|+.+++.|
T Consensus       689 ~I~~iL~~~~~~I~~~v~~ik~i~~~~  715 (717)
T PF10168_consen  689 TIKEILKQQGEEIDELVKQIKNIKKIV  715 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444555555555555555555543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR00634 recN DNA repair protein RecN

Probab=97.82  E-value=0.0051  Score=68.58  Aligned_cols=45  Identities=11%  Similarity=0.069  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q 010712           57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK  101 (503)
Q Consensus        57 ~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lk  101 (503)
                      .+..+++.+-.+.+++..++..++.+....+++++.++.++++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe  202 (563)
T TIGR00634       158 EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE  202 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555566666666666665543

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=97.81  E-value=0.0097  Score=70.81  Aligned_cols=77  Identities=12%  Similarity=0.198  Sum_probs=48.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhccc-----------hHHHHHHH
Q 010712           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQEL-------AAAQHELQILHGQIGGM-----------KSERELQM  108 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeL-------a~lq~EL~~L~~qL~~l-----------kae~E~el  108 (503)
                      ...+||+++.....+++.+..+.+.......++...+       .+++++++.++.++...           +...+.+.
T Consensus       103 s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~  182 (1109)
T PRK10929        103 STDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAES  182 (1109)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHH
Confidence            3488999999888888888877777666664444444       56666666666655431           11334455


Q ss_pred             HHHHHHHHHHHHHHH
Q 010712          109 RNLTEKIAKMEAELK  123 (503)
Q Consensus       109 ~eL~eki~kLEaEL~  123 (503)
                      ..++.++..++.++.
T Consensus       183 ~~l~~~~~~l~~~l~  197 (1109)
T PRK10929        183 AALKALVDELELAQL  197 (1109)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            556666666665554

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.0024  Score=71.97  Aligned_cols=29  Identities=10%  Similarity=0.285  Sum_probs=11.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010712          181 RQEYHHCRGTYEYEKKFYNDHLESLQVME  209 (503)
Q Consensus       181 ~qELq~lR~ele~ekk~~~el~eqlqemE  209 (503)
                      ++++..+.++++..+..+.++.+.+..++
T Consensus       854 eq~ls~l~~~~k~~~nli~~ltEk~~sl~  882 (970)
T KOG0946|consen  854 EQKLSNLQEKIKFGNNLIKELTEKISSLE  882 (970)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence            33333344444444444444444444333

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.80  E-value=0.004  Score=70.27  Aligned_cols=16  Identities=13%  Similarity=0.160  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQK   64 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~   64 (503)
                      ..|.+.|+.+.+|+..
T Consensus       458 ~~L~e~IeKLk~E~d~  473 (762)
T PLN03229        458 LALNEMIEKLKKEIDL  473 (762)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            3466677777776654

>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A

Probab=97.80  E-value=4.6e-06  Score=74.96  Aligned_cols=18  Identities=28%  Similarity=0.278  Sum_probs=0.0

Q ss_pred             CCCCC-CCCCCCCCCCCCC
Q 010712          432 GPGYD-LQRGQGYDMRRAP  449 (503)
Q Consensus       432 ~p~~~-~~~~~~~~~~~~p  449 (503)
                      +|++- ...++++..+.+|
T Consensus       103 TPg~~~~~~TPg~~~~~~p  121 (123)
T PF12815_consen  103 TPGAYNNAPTPGASAYSAP  121 (123)
T ss_dssp             -------------------
T ss_pred             ccccccccccccccccccc
Confidence            44443 2445554444444

>PF13166 AAA_13: AAA domain

Probab=97.80  E-value=0.003  Score=71.81  Aligned_cols=104  Identities=11%  Similarity=0.110  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH--TDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE  203 (503)
Q Consensus       126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk--~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e  203 (503)
                      ..+...+..+...+.+.......+..++..+...+....  .-...+..+..++..+..+++.+..+++.++..+..+..
T Consensus       366 ~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  445 (712)
T PF13166_consen  366 DELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEK  445 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666666666666666666666665553321  112233444555666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          204 SLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraELekl  229 (503)
                      ++++++.++.....-++.+..+|..+
T Consensus       446 ~i~~l~~~~~~~~~~~~~iN~~L~~~  471 (712)
T PF13166_consen  446 EIKELEAQLKNTEPAADRINEELKRL  471 (712)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            66666666665566666666666665

>PRK10869 recombination and repair protein; Provisional

Probab=97.79  E-value=0.0027  Score=70.72  Aligned_cols=28  Identities=7%  Similarity=0.112  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAE  225 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraE  225 (503)
                      +.++.+++.++.+++..+..+|.+.|.+
T Consensus       343 l~~Le~e~~~l~~~l~~~A~~LS~~R~~  370 (553)
T PRK10869        343 LETLALAVEKHHQQALETAQKLHQSRQR  370 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444445555555444444444443

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=97.79  E-value=0.0031  Score=68.57  Aligned_cols=93  Identities=19%  Similarity=0.279  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010712          132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN  211 (503)
Q Consensus       132 LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~  211 (503)
                      |.+|-.+++.+..+..-+..+.+.|...|...+++.   ..+..+|..+.+.+.+|+.|++..++.+   ++|+..|-+.
T Consensus       422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek---~~l~eeL~~a~~~i~~LqDEL~TTr~NY---E~QLs~MSEH  495 (518)
T PF10212_consen  422 IEELTSQLQHADSKAVHFYAECRALQKRLESAEKEK---ESLEEELKEANQNISRLQDELETTRRNY---EEQLSMMSEH  495 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHH
Confidence            444444444444444444444444444444333322   2355667777777777777777766666   3467788888


Q ss_pred             HHHHHHHHHHHHHHHHhcc
Q 010712          212 YITMATEVEKLRAELMNAP  230 (503)
Q Consensus       212 L~sm~rEIekLraELekle  230 (503)
                      |.+|...|.+-+.+|+.++
T Consensus       496 LasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  496 LASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            8888888888888888775

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.79  E-value=0.012  Score=65.44  Aligned_cols=12  Identities=42%  Similarity=0.534  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q 010712          216 ATEVEKLRAELM  227 (503)
Q Consensus       216 ~rEIekLraELe  227 (503)
                      +-.|.+|+.|++
T Consensus       635 eikVn~L~~E~e  646 (786)
T PF05483_consen  635 EIKVNKLQEELE  646 (786)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=97.78  E-value=0.0021  Score=64.35  Aligned_cols=27  Identities=22%  Similarity=0.295  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRA  224 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLra  224 (503)
                      ++++.+.+..-.++...++.|+..|..
T Consensus       164 ~e~L~ekynkeveerkrle~e~k~lq~  190 (307)
T PF10481_consen  164 YEELQEKYNKEVEERKRLEAEVKALQA  190 (307)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence            334443333333344445555555553

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=97.78  E-value=0.0033  Score=66.17  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712          103 ERELQMRNLTEKIAKMEAELKTA  125 (503)
Q Consensus       103 e~E~el~eL~eki~kLEaEL~~l  125 (503)
                      +.|.-+..|.+++++|++|.+-+
T Consensus       198 EqEalvN~LwKrmdkLe~ekr~L  220 (552)
T KOG2129|consen  198 EQEALVNSLWKRMDKLEQEKRYL  220 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445566777777777766543

>PLN02939 transferase, transferring glycosyl groups

Probab=97.77  E-value=0.004  Score=72.59  Aligned_cols=26  Identities=8%  Similarity=0.194  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           67 TENQRLAATHGTLRQELAAAQHELQI   92 (503)
Q Consensus        67 ~enqrLa~e~~~LrqeLa~lq~EL~~   92 (503)
                      .+.+++..+.+.|+.++..++.+|..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (977)
T PLN02939        156 EDLEKILTEKEALQGKINILEMRLSE  181 (977)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence            34555666666666665555554444

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.77  E-value=0.0035  Score=72.54  Aligned_cols=35  Identities=9%  Similarity=0.213  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      .+.+...++.+++++..++..++.....+..++++
T Consensus       315 ~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~  349 (1141)
T KOG0018|consen  315 AKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE  349 (1141)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444555555555555555555555543

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=97.76  E-value=0.0098  Score=71.00  Aligned_cols=37  Identities=19%  Similarity=0.334  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQH   88 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~   88 (503)
                      +.++..+..+++.+..+..++..++..+.+.+.....
T Consensus       529 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (1047)
T PRK10246        529 QSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDES  565 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555444444444444444333333333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=97.76  E-value=0.00045  Score=71.59  Aligned_cols=55  Identities=18%  Similarity=0.130  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      |..++.|+..+..+.+..-+....+..++.++++++.++...++.+..+|++|++
T Consensus        80 l~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen   80 LEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444444444333444445556666677777778888888888888888765

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=97.76  E-value=0.01  Score=63.78  Aligned_cols=34  Identities=12%  Similarity=0.126  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH
Q 010712           69 NQRLAATHGTLRQELAAAQHELQILHGQIGGMKS  102 (503)
Q Consensus        69 nqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka  102 (503)
                      +........-|.++|..++++|...+.++.+.+.
T Consensus       166 ~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~  199 (444)
T TIGR03017       166 VEPAQKAALWFVQQIAALREDLARAQSKLSAYQQ  199 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556667777777777777777777766543

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=97.76  E-value=0.0052  Score=60.91  Aligned_cols=48  Identities=23%  Similarity=0.275  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q   96 (503)
                      ..|++.|.....++..+.....++......+..++..++.+...++..
T Consensus        27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~   74 (225)
T COG1842          27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK   74 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666666666666666666666666666666666655555554

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=97.75  E-value=0.0047  Score=69.50  Aligned_cols=19  Identities=42%  Similarity=0.565  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 010712           79 LRQELAAAQHELQILHGQI   97 (503)
Q Consensus        79 LrqeLa~lq~EL~~L~~qL   97 (503)
                      |+.|.+.++.+|+.|..+|
T Consensus       392 lrsENaqLrRrLrilnqql  410 (861)
T PF15254_consen  392 LRSENAQLRRRLRILNQQL  410 (861)
T ss_pred             hhhhhHHHHHHHHHHHHHH
Confidence            3333333444444444333

>PRK11281 hypothetical protein; Provisional

Probab=97.75  E-value=0.0074  Score=71.92  Aligned_cols=51  Identities=18%  Similarity=0.270  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhcc
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQE-------LAAAQHELQILHGQIGG   99 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrqe-------La~lq~EL~~L~~qL~~   99 (503)
                      ..||+++....++++..+.++..+..++..++.+       +.+.+.+++.++.++..
T Consensus       124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~  181 (1113)
T PRK11281        124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG  181 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5588888888888888887777777766666554       44455555555555543

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.74  E-value=0.0097  Score=66.20  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       191 le~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL  226 (503)
                      +...++....+.+++..+++.-..+..+++.++.++
T Consensus       522 i~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel  557 (786)
T PF05483_consen  522 INNSKKQEEKMLKQIENLEETNTQLRNELESVKEEL  557 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=97.74  E-value=0.014  Score=62.22  Aligned_cols=38  Identities=26%  Similarity=0.404  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAA   86 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~l   86 (503)
                      ..|+..|.....||..|.....+|+..++.++.-|...
T Consensus        60 ~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~   97 (384)
T PF03148_consen   60 NELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIA   97 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            34566666666666666666666666666655444433

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=97.73  E-value=0.0016  Score=70.15  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712           63 QKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (503)
Q Consensus        63 q~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q   96 (503)
                      ..|..+|+-|.+++.....++..+++++.+....
T Consensus        93 k~Lq~~nesLeEqv~~~~d~vvql~hels~k~el  126 (596)
T KOG4360|consen   93 KALQEDNESLEEQVDAPWDRVVQLGHELSRKDEL  126 (596)
T ss_pred             hhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhh
Confidence            4455666666666666556666665555544433

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.73  E-value=0.0094  Score=63.13  Aligned_cols=11  Identities=9%  Similarity=0.069  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q 010712           59 HVEMQKLATEN   69 (503)
Q Consensus        59 ~~EIq~Le~en   69 (503)
                      ..++..|+.+.
T Consensus       221 ~~kv~flerkv  231 (502)
T KOG0982|consen  221 ERKVRFLERKV  231 (502)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=97.72  E-value=0.0017  Score=58.25  Aligned_cols=84  Identities=18%  Similarity=0.218  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV  207 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqe  207 (503)
                      +..|+..++.++..+..++.++..+|-.|..+.+.++...+++..++.++.+|+..++.+-.-+-.-...+++++.++.+
T Consensus        28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D  107 (120)
T PF12325_consen   28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD  107 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            55566677777788888888888888888888888777777888888888888888877776665555555566655555


Q ss_pred             HHHH
Q 010712          208 MEKN  211 (503)
Q Consensus       208 mEk~  211 (503)
                      +.+-
T Consensus       108 lK~m  111 (120)
T PF12325_consen  108 LKEM  111 (120)
T ss_pred             HHHH
Confidence            5443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]

Probab=97.69  E-value=0.0011  Score=75.77  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=9.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCC
Q 010712          333 PTKGPSYDPAKGPGYDPTKGP  353 (503)
Q Consensus       333 ~s~~~~y~~~~~~~y~~~~~p  353 (503)
                      .+++|+|++++.|.+|-+|+|
T Consensus       779 ~s~tp~~~~~~Tp~~dG~rTP  799 (1024)
T KOG1999|consen  779 GSRTPARDGGATPSHDGSRTP  799 (1024)
T ss_pred             cccCccccCCCCcCCCCCcCC
Confidence            344444444444444444444

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=97.68  E-value=0.0096  Score=62.41  Aligned_cols=57  Identities=14%  Similarity=0.190  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccc
Q 010712          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI----TMATEVEKLRAELMNAPN  231 (503)
Q Consensus       175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~----sm~rEIekLraELekle~  231 (503)
                      .||.=|++||..|+.+|+...+.........+++-.+|.    +...+|..|+..|.....
T Consensus       519 sEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAte  579 (593)
T KOG4807|consen  519 SEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATE  579 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence            445555666666666555554444443444444443332    345667777776655443

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=97.68  E-value=0.0033  Score=74.50  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=12.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010712          170 IPALLSELESLRQEYHHCRGTYEYEKK  196 (503)
Q Consensus       170 i~~l~~EIe~L~qELq~lR~ele~ekk  196 (503)
                      +..+..+|.+|+.++..+..+++.++.
T Consensus       880 ~~qle~~~~~l~e~~~~~~s~~~e~~~  906 (1294)
T KOG0962|consen  880 LQQLEEDIEELSEEITRLDSKVKELLE  906 (1294)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHhhHh
Confidence            334444455555555444444444433

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=97.67  E-value=0.0062  Score=58.49  Aligned_cols=114  Identities=21%  Similarity=0.240  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccchH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010712           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG-QIGGMKS-ERELQMRNLTEKIAKMEAELKTAEPVKLE  131 (503)
Q Consensus        54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~-qL~~lka-e~E~el~eL~eki~kLEaEL~~le~Lk~E  131 (503)
                      +|.....+.++...-.++|...+...++.+..+...+..-.. ....... ..+....+|.+.+..|++|..+.+.|..-
T Consensus         3 rl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qv   82 (182)
T PF15035_consen    3 RLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQV   82 (182)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHH
Confidence            345555555555555566666666666666655555522100 0000000 01112345666777777777777776555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712          132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV  167 (503)
Q Consensus       132 LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~el  167 (503)
                      ...|+.+|++....-+.|..+++.|+.++.++..++
T Consensus        83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL  118 (182)
T PF15035_consen   83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDEL  118 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666666666666666655555554443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=97.67  E-value=0.02  Score=61.31  Aligned_cols=28  Identities=21%  Similarity=0.176  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           55 IASQHVEMQKLATENQRLAATHGTLRQE   82 (503)
Q Consensus        55 Ie~~~~EIq~Le~enqrLa~e~~~Lrqe   82 (503)
                      -..++..|+.|.-.|--|+..+.+|+-+
T Consensus       326 n~kQq~~IqdLq~sN~yLe~kvkeLQ~k  353 (527)
T PF15066_consen  326 NRKQQNRIQDLQCSNLYLEKKVKELQMK  353 (527)
T ss_pred             hHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence            3445556666766666677666666443

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=97.66  E-value=0.0045  Score=73.56  Aligned_cols=15  Identities=13%  Similarity=0.337  Sum_probs=9.3

Q ss_pred             CCChHHHHHHHHHHH
Q 010712           45 MPPPEVMEQKIASQH   59 (503)
Q Consensus        45 ~p~p~~LEqeIe~~~   59 (503)
                      +|.-+.++++|+.+.
T Consensus        22 ~p~~~~iq~~l~~~~   36 (1109)
T PRK10929         22 APDEKQITQELEQAK   36 (1109)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            356566777776544

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=97.65  E-value=0.0061  Score=56.36  Aligned_cols=118  Identities=16%  Similarity=0.250  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 010712          103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQ  182 (503)
Q Consensus       103 e~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~q  182 (503)
                      ....-+.-|.+.|...+.++...+.|..++..+..++..+....+.|+.++..++.++..++.+...   +..++..+..
T Consensus        32 ~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~---l~~~~~~~~~  108 (151)
T PF11559_consen   32 NDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQ---LQKQLKSLEA  108 (151)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            3344555566666666666667777777777777777777777777777777776666544443322   3333333333


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       183 ELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL  226 (503)
                      .+...+.++..++..+..   .......++...++||++|+..|
T Consensus       109 ~~k~~kee~~klk~~~~~---~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen  109 KLKQEKEELQKLKNQLQQ---RKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333332222222   22234444555566666665554

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=97.65  E-value=0.018  Score=66.18  Aligned_cols=53  Identities=21%  Similarity=0.206  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL  226 (503)
                      +-|+-.+..||+-.-.+.++..+..+...++.-+-.+++..|+.|..+|+.-+
T Consensus       154 kye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~  206 (769)
T PF05911_consen  154 KYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALV  206 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444333334444444455555555555566666666666666544

The function of this family is unknown.

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=97.65  E-value=0.013  Score=63.83  Aligned_cols=39  Identities=10%  Similarity=0.218  Sum_probs=18.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAA   86 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~l   86 (503)
                      +..+|+.|+..+..|+.+..++..|..+-+.-..++..+
T Consensus       106 i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~  144 (570)
T COG4477         106 IDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHV  144 (570)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            344555555555555555555554444333333333333

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=97.64  E-value=0.018  Score=59.70  Aligned_cols=45  Identities=18%  Similarity=0.227  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe  227 (503)
                      .|+++..|.+.||.+++.+       ++..+.+.++++++.+-+..|++.+.
T Consensus       246 ~i~EfdiEre~LRAel~re-------e~r~K~lKeEmeSLkeiVkdlEA~hQ  290 (561)
T KOG1103|consen  246 LIEEFDIEREFLRAELERE-------EKRQKMLKEEMESLKEIVKDLEADHQ  290 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            3444444444445444443       33334444455555555555555544

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=97.63  E-value=0.022  Score=63.72  Aligned_cols=27  Identities=19%  Similarity=0.187  Sum_probs=19.1

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 010712           44 MMPPPEVMEQKIASQHVEMQKLATENQ   70 (503)
Q Consensus        44 ~~p~p~~LEqeIe~~~~EIq~Le~enq   70 (503)
                      .+|....|.-++..++.|-.+|.++++
T Consensus       469 ~pp~~~dL~~ELqqLReERdRl~aeLq  495 (739)
T PF07111_consen  469 SPPSVTDLSLELQQLREERDRLDAELQ  495 (739)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            356667787777777777777777664

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=0.013  Score=62.48  Aligned_cols=28  Identities=18%  Similarity=0.234  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           55 IASQHVEMQKLATENQRLAATHGTLRQE   82 (503)
Q Consensus        55 Ie~~~~EIq~Le~enqrLa~e~~~Lrqe   82 (503)
                      ++....+...|.++.......+++|+++
T Consensus       236 l~eq~eeneel~ae~kqh~v~~~ales~  263 (521)
T KOG1937|consen  236 LTEQNEENEELQAEYKQHLVEYKALESK  263 (521)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            3333444444555555555555555444

>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here

Probab=97.62  E-value=0.012  Score=54.86  Aligned_cols=85  Identities=14%  Similarity=0.129  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 010712          149 LIAKVHQLTQDLQRAHT--DVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL-----QVMEKNYITMATEVEK  221 (503)
Q Consensus       149 Le~qiq~L~~ELqrlk~--elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eql-----qemEk~L~sm~rEIek  221 (503)
                      +...+...+..|.....  ....+..+..+++.++.++......++.+......+....     ..+...++.+......
T Consensus       118 l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~  197 (213)
T cd00176         118 LEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEE  197 (213)
T ss_pred             HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence            45555555544432111  1233444455555555555555555555544444443321     3345555555665666


Q ss_pred             HHHHHHhccccc
Q 010712          222 LRAELMNAPNVD  233 (503)
Q Consensus       222 LraELekle~el  233 (503)
                      +...+....+.|
T Consensus       198 l~~~~~~~~~~L  209 (213)
T cd00176         198 LLELAEERQKKL  209 (213)
T ss_pred             HHHHHHHHHHHH
Confidence            655555544443

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=97.61  E-value=0.056  Score=54.07  Aligned_cols=11  Identities=27%  Similarity=0.468  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHH
Q 010712          216 ATEVEKLRAEL  226 (503)
Q Consensus       216 ~rEIekLraEL  226 (503)
                      ..||..++..|
T Consensus       203 ~~Ei~~lk~~l  213 (247)
T PF06705_consen  203 LEEIAALKNAL  213 (247)
T ss_pred             HHHHHHHHHHH
Confidence            33444443333

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=97.61  E-value=0.0093  Score=65.83  Aligned_cols=34  Identities=29%  Similarity=0.263  Sum_probs=14.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQD  159 (503)
Q Consensus       126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~E  159 (503)
                      +.|+.|.+.++.+++.+..++.++..+++.++.+
T Consensus       277 ~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~  310 (511)
T PF09787_consen  277 EELKQERDHLQEEIQLLERQIEQLRAELQDLEAQ  310 (511)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444433333

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=97.59  E-value=0.024  Score=67.82  Aligned_cols=41  Identities=15%  Similarity=0.138  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE   89 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~E   89 (503)
                      ..++++++.+...+..+..+...+...+..+...+..+...
T Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (1047)
T PRK10246        533 DALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQE  573 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666665555555554444444444444443333333

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=97.58  E-value=0.063  Score=51.33  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=13.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010712          169 QIPALLSELESLRQEYHHCRGTYEYEK  195 (503)
Q Consensus       169 qi~~l~~EIe~L~qELq~lR~ele~ek  195 (503)
                      ++..++.+|..++.+++.++..++...
T Consensus       146 ki~~l~~~i~~~e~~~~~~~~~~~~i~  172 (218)
T cd07596         146 KVEELEEELEEAESALEEARKRYEEIS  172 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555544443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=97.58  E-value=0.0053  Score=69.04  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010712           72 LAATHGTLRQELAAAQHELQI   92 (503)
Q Consensus        72 La~e~~~LrqeLa~lq~EL~~   92 (503)
                      |..+...|+++|..++++|+.
T Consensus       392 lrsENaqLrRrLrilnqqlre  412 (861)
T PF15254_consen  392 LRSENAQLRRRLRILNQQLRE  412 (861)
T ss_pred             hhhhhHHHHHHHHHHHHHHHH
Confidence            334444555555555554444

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=97.57  E-value=0.0029  Score=66.75  Aligned_cols=20  Identities=5%  Similarity=0.340  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010712          207 VMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       207 emEk~L~sm~rEIekLraEL  226 (503)
                      .+.+.+.+|..||..|.-.+
T Consensus       332 ~IKqAl~kLk~EI~qMdvrI  351 (359)
T PF10498_consen  332 KIKQALTKLKQEIKQMDVRI  351 (359)
T ss_pred             HHHHHHHHHHHHHHHhhhhh
Confidence            33334444444444444333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=97.57  E-value=0.0011  Score=64.01  Aligned_cols=35  Identities=11%  Similarity=0.009  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN  211 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~  211 (503)
                      ++.++.|+..+..++..+++++..++++.+++.+.
T Consensus       146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R  180 (194)
T PF08614_consen  146 NEILQDELQALQLQLNMLEEKLRKLEEENRELVER  180 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444443333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=97.57  E-value=0.085  Score=52.76  Aligned_cols=7  Identities=0%  Similarity=0.226  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 010712           53 QKIASQH   59 (503)
Q Consensus        53 qeIe~~~   59 (503)
                      +++....
T Consensus        12 e~~~~f~   18 (247)
T PF06705_consen   12 ERFSGFE   18 (247)
T ss_pred             HHHHHHH
Confidence            3333333

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.56  E-value=0.0065  Score=67.11  Aligned_cols=28  Identities=14%  Similarity=0.036  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           60 VEMQKLATENQRLAATHGTLRQELAAAQ   87 (503)
Q Consensus        60 ~EIq~Le~enqrLa~e~~~LrqeLa~lq   87 (503)
                      ...+.+..+++++.....++.++++-++
T Consensus       164 ~~w~~~~~~l~~~~~~~~e~~~~~d~L~  191 (557)
T COG0497         164 QAWKQARRELEDLQEKERERAQRADLLQ  191 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444443333333333333

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=0.012  Score=62.84  Aligned_cols=29  Identities=14%  Similarity=0.159  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          205 LQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       205 lqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      +...=.++..|-.+--.+++++..+++.+
T Consensus       457 iH~nc~ei~E~i~~tg~~~revrdlE~qI  485 (521)
T KOG1937|consen  457 IHLNCMEILEMIRETGALKREVRDLESQI  485 (521)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence            33344445555555566666666555543

>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.03  Score=59.16  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK  123 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~  123 (503)
                      .+++..-..+..+=+.|..++.++..+..+|..-+...+.++......|-......+..+..|+..|..++.++.
T Consensus       288 lv~dt~w~~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq  362 (542)
T KOG0993|consen  288 LVLDTLWFILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQ  362 (542)
T ss_pred             cChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            344555555666655666666666666666655555555555555444433333445555666666666555554

>PLN02939 transferase, transferring glycosyl groups

Probab=97.55  E-value=0.012  Score=68.90  Aligned_cols=27  Identities=19%  Similarity=0.179  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712           73 AATHGTLRQELAAAQHELQILHGQIGG   99 (503)
Q Consensus        73 a~e~~~LrqeLa~lq~EL~~L~~qL~~   99 (503)
                      .++++.+..+-++++.+|.-|+..|.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (977)
T PLN02939        155 LEDLEKILTEKEALQGKINILEMRLSE  181 (977)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence            334444445555666666666666654

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.55  E-value=1.8e-05  Score=90.42  Aligned_cols=58  Identities=12%  Similarity=0.109  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcccccc
Q 010712          177 LESLRQEYHHCRGTYEYEKK---FYNDHLESLQVMEKNYITM---ATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk---~~~el~eqlqemEk~L~sm---~rEIekLraELekle~el~  234 (503)
                      |..|+.+..+++.+++.++.   .+.-++++...++.++..|   ..++..++.++..|+.++.
T Consensus       259 i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~  322 (722)
T PF05557_consen  259 IRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELN  322 (722)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555556666666555543   3344556666676666544   5788888888888888763

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p

Probab=97.54  E-value=0.11  Score=51.10  Aligned_cols=28  Identities=25%  Similarity=0.366  Sum_probs=15.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010712          169 QIPALLSELESLRQEYHHCRGTYEYEKK  196 (503)
Q Consensus       169 qi~~l~~EIe~L~qELq~lR~ele~ekk  196 (503)
                      ++..++.+|.+++...+.++.+++.+.+
T Consensus       144 K~~~~~~ei~~~e~~~~~a~~~~e~is~  171 (216)
T cd07627         144 KLNSLLSELEEAERRASELKKEFEEVSE  171 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556666666666665555555433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in

>PF15294 Leu_zip: Leucine zipper

Probab=97.53  E-value=0.0021  Score=65.12  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      ...+..||.+|..+|.+|...+..++.+....-.+-..|+.+|
T Consensus       127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L  169 (278)
T PF15294_consen  127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQL  169 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446666777777777776666666555444444444443333

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=97.53  E-value=0.022  Score=54.78  Aligned_cols=111  Identities=15%  Similarity=0.186  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQH-ELQILHGQI-GGMKSERELQMRNLTEKIAKMEAELKTAEPVK  129 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~-EL~~L~~qL-~~lkae~E~el~eL~eki~kLEaEL~~le~Lk  129 (503)
                      .+....+..-|++|..+..+....+..|.++|..... +........ .....+++.-+..|.+.....+.-..-..-|+
T Consensus         8 qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLR   87 (182)
T PF15035_consen    8 QEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLR   87 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3344444455566666666666666666666632210 111110000 01112333344444444333333222223344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      .+|++.+...+.|..++..|..+...+..+|..
T Consensus        88 eQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~  120 (182)
T PF15035_consen   88 EQLEQARKANEALQEDLQKLTQDWERLRDELEQ  120 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555543

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.0033  Score=69.13  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010712          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM  208 (503)
Q Consensus       175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqem  208 (503)
                      .||..+..++..|+.+|+..++.+++|+..+..+
T Consensus       474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l  507 (652)
T COG2433         474 REIRARDRRIERLEKELEEKKKRVEELERKLAEL  507 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555444444444444444333

>PRK10698 phage shock protein PspA; Provisional

Probab=97.53  E-value=0.033  Score=55.06  Aligned_cols=10  Identities=10%  Similarity=0.175  Sum_probs=4.2

Q ss_pred             HHHHHHhccc
Q 010712          222 LRAELMNAPN  231 (503)
Q Consensus       222 LraELekle~  231 (503)
                      +..||+.|+.
T Consensus       206 ve~ELa~LK~  215 (222)
T PRK10698        206 ISEQLAALKA  215 (222)
T ss_pred             HHHHHHHHHH
Confidence            3444444443

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=97.52  E-value=0.058  Score=52.84  Aligned_cols=98  Identities=17%  Similarity=0.133  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHH
Q 010712          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEY----EKKFYNDH  201 (503)
Q Consensus       126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~----ekk~~~el  201 (503)
                      +.++..+..++.--..|...+++....+....+..+.++....      .+|+....||..++...+.    ++..+...
T Consensus       100 ek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe------ekL~~ANeei~~v~~~~~~e~~aLqa~lkk~  173 (207)
T PF05010_consen  100 EKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAE------EKLEKANEEIAQVRSKHQAELLALQASLKKE  173 (207)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444433221      2244444444444443222    22333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          202 LESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       202 ~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      .-+++.+++.|+...+|++.|..--+.|
T Consensus       174 e~~~~SLe~~LeQK~kEn~ELtkICDeL  201 (207)
T PF05010_consen  174 EMKVQSLEESLEQKTKENEELTKICDEL  201 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555666666666665555544444

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A

Probab=97.51  E-value=2.1e-05  Score=70.72  Aligned_cols=6  Identities=17%  Similarity=0.772  Sum_probs=0.0

Q ss_pred             CCCCCC
Q 010712          351 KGPGYD  356 (503)
Q Consensus       351 ~~p~y~  356 (503)
                      |+|+|+
T Consensus        34 rTPa~~   39 (123)
T PF12815_consen   34 RTPAWG   39 (123)
T ss_dssp             ------
T ss_pred             cCcccc
Confidence            333333

>PRK10869 recombination and repair protein; Provisional

Probab=97.51  E-value=0.022  Score=63.47  Aligned_cols=41  Identities=7%  Similarity=-0.016  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILH   94 (503)
Q Consensus        54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~   94 (503)
                      ++..+-.+.+.+..+++++........++++-++-+++.++
T Consensus       158 ~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~  198 (553)
T PRK10869        158 EMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN  198 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444443

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=97.50  E-value=0.0054  Score=70.42  Aligned_cols=46  Identities=24%  Similarity=0.376  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHH
Q 010712          147 EELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYE  192 (503)
Q Consensus       147 qeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele  192 (503)
                      +.|..+++.|+.++.+++.++.++.....++..|+++.+..+.-++
T Consensus       342 ~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~  387 (726)
T PRK09841        342 RALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYL  387 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555444444444444444444444444333

>TIGR02977 phageshock_pspA phage shock protein A

Probab=97.50  E-value=0.018  Score=56.63  Aligned_cols=12  Identities=25%  Similarity=0.111  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q 010712           75 THGTLRQELAAA   86 (503)
Q Consensus        75 e~~~LrqeLa~l   86 (503)
                      ++..+++.|+.+
T Consensus        39 ~l~~ar~~lA~~   50 (219)
T TIGR02977        39 TLVEVRTTSART   50 (219)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=97.49  E-value=0.042  Score=59.93  Aligned_cols=53  Identities=15%  Similarity=0.322  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          108 MRNLTEKIAKMEAELKTAE-PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL  160 (503)
Q Consensus       108 l~eL~eki~kLEaEL~~le-~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~EL  160 (503)
                      +..+...+..++.++.+++ .+..+....+.+++.+....++|..+.+.|-.+|
T Consensus        69 l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~i  122 (475)
T PRK10361         69 VRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRI  122 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444333322 2233333334444455555555666666555555

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=97.49  E-value=0.0088  Score=60.36  Aligned_cols=22  Identities=32%  Similarity=0.291  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhh
Q 010712           76 HGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        76 ~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      +..++.+|..+..+.+.++.++
T Consensus        22 L~~~~~~l~~~~~~~~~l~~~i   43 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRRRI   43 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=97.49  E-value=0.0032  Score=69.20  Aligned_cols=14  Identities=36%  Similarity=0.275  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHhc
Q 010712          216 ATEVEKLRAELMNA  229 (503)
Q Consensus       216 ~rEIekLraELekl  229 (503)
                      .+.|+.|+.-|.+.
T Consensus       294 dr~ie~lr~~ln~y  307 (861)
T KOG1899|consen  294 DRFIESLRNYLNNY  307 (861)
T ss_pred             hhHHHHHHHHhhhh
Confidence            44455555554443

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.48  E-value=0.034  Score=59.10  Aligned_cols=36  Identities=22%  Similarity=0.160  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      +|+.-+++++.-|++.+..+++|+.+..-|...+..
T Consensus       245 KL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~  280 (446)
T KOG4438|consen  245 KLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTN  280 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence            344444455555555555555555555555544443

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=97.48  E-value=0.051  Score=54.09  Aligned_cols=33  Identities=18%  Similarity=0.216  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712           63 QKLATENQRLAATHGTLRQELAAAQHELQILHG   95 (503)
Q Consensus        63 q~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~   95 (503)
                      +....+...+...+...-.++..++.+|..++.
T Consensus        34 ~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~   66 (240)
T PF12795_consen   34 KKQKKRAAEYQKQIDQAPKEIRELQKELEALKS   66 (240)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence            333444444444444444455555555555544

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=97.47  E-value=0.014  Score=55.72  Aligned_cols=16  Identities=31%  Similarity=0.395  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHhccc
Q 010712          216 ATEVEKLRAELMNAPN  231 (503)
Q Consensus       216 ~rEIekLraELekle~  231 (503)
                      ..+|..|+.+++.++.
T Consensus       137 ~~ei~~lr~~iE~~K~  152 (177)
T PF07798_consen  137 DTEIANLRTEIESLKW  152 (177)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444445555554433

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=97.47  E-value=0.022  Score=55.79  Aligned_cols=6  Identities=33%  Similarity=0.285  Sum_probs=2.2

Q ss_pred             HHHHhc
Q 010712          224 AELMNA  229 (503)
Q Consensus       224 aELekl  229 (503)
                      .+|+.|
T Consensus       210 ~~La~L  215 (221)
T PF04012_consen  210 DELAAL  215 (221)
T ss_pred             HHHHHH
Confidence            333333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>smart00806 AIP3 Actin interacting protein 3

Probab=97.46  E-value=0.039  Score=58.94  Aligned_cols=87  Identities=22%  Similarity=0.284  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHHHHHHhhHHHHH--------HHH---HHH
Q 010712          142 LVVAREELIAKVHQLTQDLQRAHTDV---------QQIPALLSELESLRQEYHHCRGTYEYEK--------KFY---NDH  201 (503)
Q Consensus       142 L~~erqeLe~qiq~L~~ELqrlk~el---------qqi~~l~~EIe~L~qELq~lR~ele~ek--------k~~---~el  201 (503)
                      |..+.+.|..+++.|+.-++.++.++         .++..+.++|+.+..+|++++.-|+.++        +.+   -+.
T Consensus       215 L~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEE  294 (426)
T smart00806      215 LSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEE  294 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Confidence            33444555555666655555555553         3466677777777777777776555542        111   122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          202 LESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       202 ~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      .+.+.-+++-+..|...|+++...+..
T Consensus       295 qqfL~lQedL~~DL~dDL~ka~eTf~l  321 (426)
T smart00806      295 QQFLTLQEDLIADLKEDLEKAEETFDL  321 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222333344444555555555555443

Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.46  E-value=0.0051  Score=65.50  Aligned_cols=42  Identities=19%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ  168 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq  168 (503)
                      .+..|+.+++.+...+.++++.++.+++++...+.+++.+++
T Consensus       358 ~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~  399 (493)
T KOG0804|consen  358 LLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK  399 (493)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444555555555555554444444433

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=97.45  E-value=0.016  Score=59.94  Aligned_cols=31  Identities=19%  Similarity=0.177  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          201 HLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       201 l~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      +..++...++....+..|.+.|+.-|..++.
T Consensus       257 LRAel~ree~r~K~lKeEmeSLkeiVkdlEA  287 (561)
T KOG1103|consen  257 LRAELEREEKRQKMLKEEMESLKEIVKDLEA  287 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3333333444444444444555544444443

>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []

Probab=97.45  E-value=0.054  Score=51.59  Aligned_cols=17  Identities=24%  Similarity=0.427  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010712          106 LQMRNLTEKIAKMEAEL  122 (503)
Q Consensus       106 ~el~eL~eki~kLEaEL  122 (503)
                      .+++.|-.+....-.++
T Consensus        82 ~eir~LA~~t~~~~~~I   98 (213)
T PF00015_consen   82 DEIRKLAEQTSESAKEI   98 (213)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhHHHHH
Confidence            35555555554444433

Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=97.45  E-value=0.073  Score=56.81  Aligned_cols=41  Identities=12%  Similarity=0.111  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       191 le~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      +...+....++..++.++.+++..++++|+.|+..|.....
T Consensus       253 i~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~  293 (384)
T PF03148_consen  253 IHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEG  293 (384)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344444455555555555555555555555555544433

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=97.44  E-value=0.015  Score=58.59  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010712           54 KIASQHVEMQKLATENQRLAA   74 (503)
Q Consensus        54 eIe~~~~EIq~Le~enqrLa~   74 (503)
                      +|..+..+|..+..+++.|..
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~   41 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRR   41 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444443333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.016  Score=55.64  Aligned_cols=19  Identities=11%  Similarity=0.200  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010712          205 LQVMEKNYITMATEVEKLR  223 (503)
Q Consensus       205 lqemEk~L~sm~rEIekLr  223 (503)
                      ..+++.+|..+..|..-+.
T Consensus       160 e~dL~aELdaL~~E~d~~~  178 (218)
T KOG1655|consen  160 EADLDAELDALGQELDMLE  178 (218)
T ss_pred             HHHHHHHHHHHHhHhhccc
Confidence            4567777777777766554

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=97.43  E-value=0.025  Score=61.44  Aligned_cols=110  Identities=14%  Similarity=0.167  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 010712           85 AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA-EPVKLEFQKSKTE----AQNLVVAREELIAKVHQLTQD  159 (503)
Q Consensus        85 ~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~l-e~Lk~ELeqLraE----LqqL~~erqeLe~qiq~L~~E  159 (503)
                      .+...|..|..++..+...++.+.+.|..+|..+..++... ......|..++.+    ++.++..+.+|-.+|..+...
T Consensus       355 ~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~K  434 (531)
T PF15450_consen  355 ELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDK  434 (531)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34444555555555555555555566666666555544321 1122222222222    222223333333344444333


Q ss_pred             HHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHhhHHHH
Q 010712          160 LQRAHTDVQ-----QIPALLSELESLRQEYHHCRGTYEYE  194 (503)
Q Consensus       160 Lqrlk~elq-----qi~~l~~EIe~L~qELq~lR~ele~e  194 (503)
                      ....+.++.     +..+...+|..+++||..+-..++.+
T Consensus       435 c~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~  474 (531)
T PF15450_consen  435 CDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLL  474 (531)
T ss_pred             HHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333322     11233445666666666554444443

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.009  Score=65.84  Aligned_cols=8  Identities=38%  Similarity=0.767  Sum_probs=4.0

Q ss_pred             CCCCCCCC
Q 010712          239 SYGGATGN  246 (503)
Q Consensus       239 ~y~~~~~~  246 (503)
                      .||.+.|-
T Consensus       539 ~~gik~GD  546 (652)
T COG2433         539 EYGIKEGD  546 (652)
T ss_pred             hhccccCc
Confidence            45555443

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=97.41  E-value=0.019  Score=64.30  Aligned_cols=42  Identities=29%  Similarity=0.317  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712           55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (503)
Q Consensus        55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q   96 (503)
                      |..+..||++|+.+.+-|.+.-..-+-.|+..-.||+.|...
T Consensus        68 is~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~a  109 (739)
T PF07111_consen   68 ISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARA  109 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            445557778888777666554222333455555566666433

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF15294 Leu_zip: Leucine zipper

Probab=97.40  E-value=0.049  Score=55.45  Aligned_cols=104  Identities=13%  Similarity=0.184  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-------------HHHHHHHHHHHHHHHHhhHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA-------------LLSELESLRQEYHHCRGTYEYE  194 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~-------------l~~EIe~L~qELq~lR~ele~e  194 (503)
                      |..||..|+.|.++|+..+..++.+......+-.+++.+++.+..             -..+|..|+..+..++.+++  
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~e--  207 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELE--  207 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHH--
Confidence            566677777777777766666666554444444444444333322             12235555555555554433  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       195 kk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                       +...+..++.+.++..+.....+|-+++..|+..++++.
T Consensus       208 -k~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLe  246 (278)
T PF15294_consen  208 -KALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELE  246 (278)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHH
Confidence             335555667777777777777777777777777766664

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=97.39  E-value=0.062  Score=64.19  Aligned_cols=18  Identities=11%  Similarity=0.257  Sum_probs=10.8

Q ss_pred             CCCChHHHHHHHHHHHHH
Q 010712           44 MMPPPEVMEQKIASQHVE   61 (503)
Q Consensus        44 ~~p~p~~LEqeIe~~~~E   61 (503)
                      +|.-|..|.+++...-..
T Consensus       163 PLsEp~~LKkkfD~IF~~  180 (1294)
T KOG0962|consen  163 PLSEPKNLKKKFDDIFSA  180 (1294)
T ss_pred             CCCChHHHHHHHHHHHHH
Confidence            345667777776655443

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.0099  Score=64.12  Aligned_cols=38  Identities=18%  Similarity=0.350  Sum_probs=25.3

Q ss_pred             CCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           43 DMMPPP----EVMEQKIASQHVEMQKLATENQRLAATHGTLR   80 (503)
Q Consensus        43 ~~~p~p----~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lr   80 (503)
                      .++|.|    +.|.++|..+..++......++.+.+++.+|+
T Consensus       327 kliPVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq  368 (508)
T KOG3091|consen  327 KLIPVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ  368 (508)
T ss_pred             cccceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555    67888888877777766666666666666654

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=97.37  E-value=0.037  Score=62.23  Aligned_cols=103  Identities=9%  Similarity=0.110  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI---------PALLSELESLRQEYHHCRGTYEYEKKF  197 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi---------~~l~~EIe~L~qELq~lR~ele~ekk~  197 (503)
                      ..+.+|.+.++++.+-...+.+|....+...+-|+.+.++++.+         +..+...++|++.|..-|+...+.+|.
T Consensus      1002 ~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~~Lst~RsRr~~~Ekq 1081 (1480)
T COG3096        1002 RAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELHAQLSTNRSRRNQLEKQ 1081 (1480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHHHHHhccHhHHHHHHHH
Confidence            34445555555555555555555555555445555555555543         223344566777777666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +.-++.+++.+.+.|.++++....++..|-+.
T Consensus      1082 lT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~A 1113 (1480)
T COG3096        1082 LTFCEAEMDNLTRKLRKLERDYFEMREQVVTA 1113 (1480)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence            66666666666666666666666666655443

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=97.37  E-value=0.023  Score=66.40  Aligned_cols=14  Identities=14%  Similarity=0.427  Sum_probs=8.3

Q ss_pred             CChHHHHHHHHHHH
Q 010712           46 PPPEVMEQKIASQH   59 (503)
Q Consensus        46 p~p~~LEqeIe~~~   59 (503)
                      |.+..||+-+.-++
T Consensus       369 Pa~~~lEETlSTLE  382 (1041)
T KOG0243|consen  369 PAKHNLEETLSTLE  382 (1041)
T ss_pred             CCcccHHHHHHHHH
Confidence            55666776665443

>KOG2196 consensus Nuclear porin [Nuclear structure]

Probab=97.37  E-value=0.024  Score=56.18  Aligned_cols=50  Identities=12%  Similarity=0.128  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      ..||+-|.....||..-+.-..+...++.++-+.|-.....|..|..++.
T Consensus        74 ~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~  123 (254)
T KOG2196|consen   74 KTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVV  123 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH
Confidence            67888888888888777766666777777776666666666666655543

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=97.36  E-value=0.0046  Score=65.37  Aligned_cols=51  Identities=12%  Similarity=0.203  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (503)
Q Consensus       111 L~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELq  161 (503)
                      -++.+.+|-.+|+.++.++.+|+.+++.|.+.+.+...+..+...|+..+.
T Consensus       240 akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~  290 (575)
T KOG4403|consen  240 AKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD  290 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh
Confidence            344455555566666666666666666666666665555555555554443

>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene

Probab=97.36  E-value=0.13  Score=47.93  Aligned_cols=19  Identities=11%  Similarity=0.265  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATEN   69 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~en   69 (503)
                      |++.+..+...+..|...+
T Consensus         3 l~~~~~~l~~~~~~l~~~l   21 (202)
T PF01442_consen    3 LDDRLDSLSSRTEELEERL   21 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555433

This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....

>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6

Probab=97.35  E-value=0.0062  Score=65.51  Aligned_cols=95  Identities=14%  Similarity=0.221  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------HHHH
Q 010712          135 SKTEAQNLVVAREELIAKVHQLTQDLQR--AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKF-----------YNDH  201 (503)
Q Consensus       135 LraELqqL~~erqeLe~qiq~L~~ELqr--lk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~-----------~~el  201 (503)
                      |..+.+.|...+.+|+..|+.|..++..  .+-...++..+..+|..+..+|..+...+..++-.           +.+.
T Consensus       211 L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eE  290 (424)
T PF03915_consen  211 LSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEE  290 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            3334444444555555555555555422  22223456666777777777777766665554321           2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          202 LESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       202 ~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      .+.+...+.-+..|...++++..-+..+
T Consensus       291 QqfL~~QedL~~DL~eDl~k~~etf~lv  318 (424)
T PF03915_consen  291 QQFLKLQEDLLSDLKEDLKKASETFALV  318 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2234444444455555565555554443

In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.

>PRK11519 tyrosine kinase; Provisional

Probab=97.34  E-value=0.013  Score=67.13  Aligned_cols=26  Identities=15%  Similarity=0.312  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712           74 ATHGTLRQELAAAQHELQILHGQIGG   99 (503)
Q Consensus        74 ~e~~~LrqeLa~lq~EL~~L~~qL~~   99 (503)
                      ..++-|+++|..++.+|+..+..+.+
T Consensus       267 ~a~~fL~~ql~~l~~~L~~aE~~l~~  292 (719)
T PRK11519        267 KSLAFLAQQLPEVRSRLDVAENKLNA  292 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=97.34  E-value=0.0034  Score=65.12  Aligned_cols=27  Identities=15%  Similarity=0.329  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRA  224 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLra  224 (503)
                      ..++.++++.++.++..+..++++|++
T Consensus       108 l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen  108 LIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444455555555555555555554

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=97.32  E-value=0.051  Score=53.93  Aligned_cols=27  Identities=22%  Similarity=0.204  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          134 KSKTEAQNLVVAREELIAKVHQLTQDL  160 (503)
Q Consensus       134 qLraELqqL~~erqeLe~qiq~L~~EL  160 (503)
                      .++.++..+...+..|...+..|+.+|
T Consensus       103 ~~~~~~~~~~~~~~~l~~~~~~Le~Ki  129 (225)
T COG1842         103 ALEAELQQAEEQVEKLKKQLAALEQKI  129 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria

Probab=97.32  E-value=0.011  Score=68.31  Aligned_cols=43  Identities=19%  Similarity=0.429  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcc--------chHHHHHHHHHHHHHHHHHHH
Q 010712           78 TLRQELAAAQHELQILHGQIGG--------MKSERELQMRNLTEKIAKMEA  120 (503)
Q Consensus        78 ~LrqeLa~lq~EL~~L~~qL~~--------lkae~E~el~eL~eki~kLEa  120 (503)
                      .|+.+|..++++|..|+..+..        .+.-.+..+..+..+|..||.
T Consensus      1067 eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk 1117 (1439)
T PF12252_consen 1067 ELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEK 1117 (1439)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5666677777777777654432        122334445556666666554

There is little literature describing the family.

>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.32  E-value=0.027  Score=56.70  Aligned_cols=46  Identities=11%  Similarity=-0.069  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712          190 TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR  235 (503)
Q Consensus       190 ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~  235 (503)
                      .++.++++...+.-.++.|-...+.+-.|.+.++..+..|..+|..
T Consensus       161 ~~EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnhELfv  206 (389)
T KOG4687|consen  161 AHEGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFV  206 (389)
T ss_pred             HHHHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3556677777777777888777777777778888888888877754

>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2

Probab=97.31  E-value=0.18  Score=50.29  Aligned_cols=30  Identities=10%  Similarity=0.147  Sum_probs=17.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010712          169 QIPALLSELESLRQEYHHCRGTYEYEKKFY  198 (503)
Q Consensus       169 qi~~l~~EIe~L~qELq~lR~ele~ekk~~  198 (503)
                      ++..++.||.+++.....++.+++.+.+.+
T Consensus       160 K~~~~~~ev~~~e~~~~~a~~~fe~Is~~~  189 (234)
T cd07664         160 KLQQAKDEIKEWEAKVQQGERDFEQISKTI  189 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666666666666655554433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>PF14988 DUF4515: Domain of unknown function (DUF4515)

Probab=97.31  E-value=0.14  Score=50.21  Aligned_cols=29  Identities=14%  Similarity=0.163  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          197 FYNDHLESLQVMEKNYITMATEVEKLRAE  225 (503)
Q Consensus       197 ~~~el~eqlqemEk~L~sm~rEIekLraE  225 (503)
                      .+..+.++.+.++.....|++....|..+
T Consensus       171 ~L~~l~~e~~~L~~~~~~Le~qk~~L~~e  199 (206)
T PF14988_consen  171 ELLQLIQEAQKLEARKSQLEKQKQQLQQE  199 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444433

>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30

Probab=97.29  E-value=0.17  Score=49.05  Aligned_cols=44  Identities=14%  Similarity=0.128  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI   92 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~   92 (503)
                      ..+.+.|..+...|..++.-+++|......|-..+...-..+..
T Consensus        17 ~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~   60 (200)
T cd07624          17 DKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQL   60 (200)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666666666555555555544433333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

Probab=97.28  E-value=0.25  Score=49.55  Aligned_cols=73  Identities=11%  Similarity=0.191  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMA  216 (503)
Q Consensus       139 LqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~  216 (503)
                      ++.+...+..++.+.++|.+.+.   ...+++..+..+|++++.+++...+++..+-...+.++  ..+|...+..++
T Consensus       148 lk~vlK~RdqkQ~d~E~l~E~l~---~rre~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K--~~e~k~~l~~~A  220 (240)
T cd07667         148 MKNVLKKRDQVQAEYEAKLEAVA---LRKEERPKVPTDVEKCQDRVECFNADLKADMERWQNNK--RQDFRQLLMGMA  220 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            33344444444444444544442   12344556666777777777655555444433333322  234444444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.11  Score=55.41  Aligned_cols=14  Identities=29%  Similarity=0.280  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHHH
Q 010712          132 FQKSKTEAQNLVVA  145 (503)
Q Consensus       132 LeqLraELqqL~~e  145 (503)
                      |.+.+..++.+..+
T Consensus       257 l~k~k~~~~~l~~K  270 (446)
T KOG4438|consen  257 LQKEKSAMVELQEK  270 (446)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=97.27  E-value=0.018  Score=60.38  Aligned_cols=59  Identities=17%  Similarity=0.204  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      .+++.+++++..++..++..+..+.++..++..++++++...++.++|+.+++.++.++
T Consensus       221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl  279 (344)
T PF12777_consen  221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL  279 (344)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33444444444444444444444444444444444444444444444444444444333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=97.27  E-value=0.024  Score=58.49  Aligned_cols=92  Identities=14%  Similarity=0.226  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEP  127 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~  127 (503)
                      +..|-.+|...+.+.++....|.+|-.+...|.-+++.++..|..++..+..++.+       +.+++..++.+.+.++.
T Consensus        79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re-------~~eK~~elEr~K~~~d~  151 (302)
T PF09738_consen   79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQRE-------YREKIRELERQKRAHDS  151 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555433332       23344444444445555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAR  146 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~er  146 (503)
                      |+.|+..|+.+|.+....+
T Consensus       152 L~~e~~~Lre~L~~rdeli  170 (302)
T PF09738_consen  152 LREELDELREQLKQRDELI  170 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666666666655444333

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=97.27  E-value=0.12  Score=56.38  Aligned_cols=16  Identities=31%  Similarity=0.356  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHhc
Q 010712          214 TMATEVEKLRAELMNA  229 (503)
Q Consensus       214 sm~rEIekLraELekl  229 (503)
                      ....+|..++.||..+
T Consensus       452 ~R~~eV~~vRqELa~l  467 (531)
T PF15450_consen  452 AREREVGAVRQELATL  467 (531)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3456666666666653

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria

Probab=97.27  E-value=0.039  Score=63.99  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712           71 RLAATHGTLRQELAAAQHELQILHGQ   96 (503)
Q Consensus        71 rLa~e~~~LrqeLa~lq~EL~~L~~q   96 (503)
                      +....+..|+++|..+++|..+++..
T Consensus      1128 K~ia~lnnlqqElklLRnEK~Rmh~~ 1153 (1439)
T PF12252_consen 1128 KAIANLNNLQQELKLLRNEKIRMHSG 1153 (1439)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHhhccC
Confidence            33444555555555555554444443

There is little literature describing the family.

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=97.26  E-value=0.045  Score=55.51  Aligned_cols=46  Identities=24%  Similarity=0.421  Sum_probs=31.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010712          125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI  170 (503)
Q Consensus       125 le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi  170 (503)
                      +..+..++++++..+..+..+...|+.+|+..+.||++.++.++.+
T Consensus       171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL  216 (267)
T PF10234_consen  171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL  216 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666777777777777777777777777777777665544

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=97.25  E-value=0.12  Score=51.56  Aligned_cols=38  Identities=16%  Similarity=0.302  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH
Q 010712           65 LATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS  102 (503)
Q Consensus        65 Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka  102 (503)
                      +..+.++.......+++.|+.+-.++..++.+|..++.
T Consensus        29 ~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~   66 (240)
T PF12795_consen   29 FLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKS   66 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence            33455666777777888888888888888888776543

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.24  E-value=7e-05  Score=87.12  Aligned_cols=14  Identities=36%  Similarity=0.439  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHH
Q 010712          214 TMATEVEKLRAELM  227 (503)
Q Consensus       214 sm~rEIekLraELe  227 (503)
                      .+.+.|..|..+|+
T Consensus       522 ~~qr~l~~le~~LE  535 (859)
T PF01576_consen  522 NHQRQLESLEAELE  535 (859)
T ss_dssp             --------------
T ss_pred             hhHHHHHHHHhHHH
Confidence            34555555555554

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=97.24  E-value=0.012  Score=59.30  Aligned_cols=25  Identities=16%  Similarity=0.232  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHH
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDH  201 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el  201 (503)
                      |.+.++||++|++-++..+..+.+.
T Consensus       119 LKEARkEIkQLkQvieTmrssL~ek  143 (305)
T PF15290_consen  119 LKEARKEIKQLKQVIETMRSSLAEK  143 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhchh
Confidence            3344444444444444444444333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=97.24  E-value=0.0027  Score=61.24  Aligned_cols=72  Identities=31%  Similarity=0.372  Sum_probs=10.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010712           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL  122 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL  122 (503)
                      ....+++.+..+..|+..+...+..+...+..+..+|..++.++......|.    +.+.++..|..++..++.++
T Consensus        68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~----~l~~~~~~L~~~~~~l~~~l  139 (194)
T PF08614_consen   68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLA----ELEAELAQLEEKIKDLEEEL  139 (194)
T ss_dssp             ----------------------------------------------HHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666666656655555555555555544444444332    22234444444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.23  E-value=0.051  Score=61.10  Aligned_cols=21  Identities=10%  Similarity=0.188  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHH
Q 010712          172 ALLSELESLRQEYHHCRGTYE  192 (503)
Q Consensus       172 ~l~~EIe~L~qELq~lR~ele  192 (503)
                      .|.+.|++...+|.+|+.+|-
T Consensus       780 ~LqkrIDa~na~Lrrl~~~Ii  800 (1104)
T COG4913         780 QLQKRIDAVNARLRRLREEII  800 (1104)
T ss_pred             HHHHhhhhhHHHHHHHHHHHH
Confidence            455566666677777666543

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.23  E-value=0.074  Score=56.86  Aligned_cols=14  Identities=14%  Similarity=0.235  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHH
Q 010712          110 NLTEKIAKMEAELK  123 (503)
Q Consensus       110 eL~eki~kLEaEL~  123 (503)
                      ....++.++|.|++
T Consensus       235 ~f~~r~~~~E~e~r  248 (554)
T KOG4677|consen  235 IFLKRTLSKEIEFR  248 (554)
T ss_pred             HHHHHHhhHHHHHH
Confidence            33444444444444

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=97.23  E-value=0.1  Score=56.94  Aligned_cols=26  Identities=19%  Similarity=0.208  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          201 HLESLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       201 l~eqlqemEk~L~sm~rEIekLraEL  226 (503)
                      +.++++.|.+.-..|..|-.+|..-|
T Consensus       170 L~~qi~~L~~~n~~i~~ea~nLt~AL  195 (475)
T PRK10361        170 LAHEIRNLQQLNAQMAQEAINLTRAL  195 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444444444433

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=97.22  E-value=0.076  Score=51.94  Aligned_cols=57  Identities=11%  Similarity=0.279  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010712          139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQ-----------QIPALLSELESLRQEYHHCRGTYEYEK  195 (503)
Q Consensus       139 LqqL~~erqeLe~qiq~L~~ELqrlk~elq-----------qi~~l~~EIe~L~qELq~lR~ele~ek  195 (503)
                      ++.+-..|..+..+++.+..+|++.+.++.           ++..+..+|.+++..++.++.+++.+.
T Consensus       123 vk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is  190 (236)
T PF09325_consen  123 VKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS  190 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455555555555555554444433           334445555555555555555544443

This is the C-terminal dimerisation domain [].

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.21  E-value=0.034  Score=59.31  Aligned_cols=18  Identities=11%  Similarity=-0.018  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHhccccc
Q 010712          216 ATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       216 ~rEIekLraELekle~el  233 (503)
                      ..-++.+-.++.++...|
T Consensus       444 q~~le~v~~~~~~ln~~l  461 (554)
T KOG4677|consen  444 QIGLERVVEILHKLNAPL  461 (554)
T ss_pred             HHHHHHHHHHHhhhhhhH
Confidence            444555555566665554

>PF14992 TMCO5: TMCO5 family

Probab=97.20  E-value=0.011  Score=60.11  Aligned_cols=60  Identities=23%  Similarity=0.300  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------chHHHHHHHHHHHHHHHHHHHH
Q 010712           62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG------MKSERELQMRNLTEKIAKMEAE  121 (503)
Q Consensus        62 Iq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~------lkae~E~el~eL~eki~kLEaE  121 (503)
                      +|+|...|+.+...+.+.+..+..+..||..+...+..      +..+.+..+++|+...++|+.+
T Consensus        13 ~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~   78 (280)
T PF14992_consen   13 EQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKE   78 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhh
Confidence            34444444444444444444444444444333332221      1223444445555555555443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=97.19  E-value=0.02  Score=60.52  Aligned_cols=21  Identities=14%  Similarity=0.268  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHhcccc
Q 010712          212 YITMATEVEKLRAELMNAPNV  232 (503)
Q Consensus       212 L~sm~rEIekLraELekle~e  232 (503)
                      |+.+++-|.+|+.|+..+.-+
T Consensus       330 lv~IKqAl~kLk~EI~qMdvr  350 (359)
T PF10498_consen  330 LVKIKQALTKLKQEIKQMDVR  350 (359)
T ss_pred             HHHHHHHHHHHHHHHHHhhhh
Confidence            345666667777776665433

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=97.18  E-value=0.025  Score=62.40  Aligned_cols=43  Identities=7%  Similarity=0.128  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI   92 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~   92 (503)
                      .++++|..++.....|.-+..-|.+++++-.++|.+++--|+.
T Consensus       108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~  150 (861)
T KOG1899|consen  108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEE  150 (861)
T ss_pred             HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            3444444444433334434444444444443444333333333

>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []

Probab=97.17  E-value=0.098  Score=59.74  Aligned_cols=25  Identities=16%  Similarity=0.122  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           73 AATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        73 a~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      .+.+..|++.|+.+..-|.++..-|
T Consensus        49 k~~l~~L~~~l~~ID~ai~~~l~lI   73 (683)
T PF08580_consen   49 KDVLYGLREGLEEIDSAISRFLDLI   73 (683)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3344445555555444444444433

KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=97.17  E-value=0.064  Score=62.83  Aligned_cols=20  Identities=15%  Similarity=0.194  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010712           59 HVEMQKLATENQRLAATHGT   78 (503)
Q Consensus        59 ~~EIq~Le~enqrLa~e~~~   78 (503)
                      ...|+.|+.+.+.+..++..
T Consensus       447 ~~~ieele~el~~~~~~l~~  466 (1041)
T KOG0243|consen  447 AEQIEELEEELENLEKQLKD  466 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=97.17  E-value=0.035  Score=57.30  Aligned_cols=34  Identities=18%  Similarity=0.120  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELq  161 (503)
                      ++.|-..++.+|+.+..+..+.+.+.++|..||.
T Consensus       139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa  172 (401)
T PF06785_consen  139 LREENQCLQLQLDALQQECGEKEEESQTLNRELA  172 (401)
T ss_pred             HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence            3444444555555555555555555555555553

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=97.16  E-value=0.15  Score=48.09  Aligned_cols=17  Identities=24%  Similarity=0.266  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010712          134 KSKTEAQNLVVAREELI  150 (503)
Q Consensus       134 qLraELqqL~~erqeLe  150 (503)
                      .++.+.++|+..|.+|+
T Consensus        95 ~~re~E~qLr~rRD~LE  111 (159)
T PF05384_consen   95 MLREREKQLRERRDELE  111 (159)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]

Probab=97.16  E-value=0.38  Score=49.65  Aligned_cols=34  Identities=12%  Similarity=0.234  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712          199 NDHLESLQVMEKNYITMATEVEKLRAELMNAPNV  232 (503)
Q Consensus       199 ~el~eqlqemEk~L~sm~rEIekLraELekle~e  232 (503)
                      +++..-+....+-..+...|+++|...+.+++++
T Consensus       232 eefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE  265 (391)
T KOG1850|consen  232 EEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKE  265 (391)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333344455555555555555544

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=97.15  E-value=0.025  Score=64.32  Aligned_cols=58  Identities=21%  Similarity=0.194  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccccc
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMA---TEVEKLRAELMNAPNVD  233 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~---rEIekLraELekle~el  233 (503)
                      ++..+..++..+..+++.+.+.+..+..++.+.+.++....   .+..+|..+|..|+.-+
T Consensus       256 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI  316 (670)
T KOG0239|consen  256 ELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI  316 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            33333344444444444444444444445555555555444   44445555555554433

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=97.14  E-value=0.16  Score=50.24  Aligned_cols=29  Identities=21%  Similarity=0.245  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTL   79 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~L   79 (503)
                      .+.+|....+.+..++.+..+....+..+
T Consensus        23 f~~~i~si~~n~s~~e~~i~qi~~~h~d~   51 (280)
T COG5074          23 FMNKILSINKNLSVYEKEINQIDNLHKDL   51 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555554544444444

>KOG3958 consensus Putative dynamitin [Cytoskeleton]

Probab=97.12  E-value=0.22  Score=50.91  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           52 EQKIASQHVEMQKLATENQRLAAT   75 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e   75 (503)
                      .++...+.-|++.|..+..++..+
T Consensus        93 ~qK~qRll~Ev~eL~~eve~ik~d  116 (371)
T KOG3958|consen   93 QQKYQRLLHEVQELTTEVEKIKTD  116 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Confidence            445555555555555555554443

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=97.12  E-value=0.019  Score=65.20  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE  220 (503)
Q Consensus       171 ~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIe  220 (503)
                      ..++.++.+|++++..++.++..+.+.++++.+.+..+...|..+..++.
T Consensus       244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~  293 (670)
T KOG0239|consen  244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV  293 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555555555555555555555555455555444444

>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1

Probab=97.11  E-value=0.36  Score=48.26  Aligned_cols=28  Identities=7%  Similarity=0.128  Sum_probs=15.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010712          169 QIPALLSELESLRQEYHHCRGTYEYEKK  196 (503)
Q Consensus       169 qi~~l~~EIe~L~qELq~lR~ele~ekk  196 (503)
                      ++..+..||.++++.+..++.+++.+-+
T Consensus       160 K~~~a~~Ev~e~e~k~~~a~~~fe~is~  187 (234)
T cd07665         160 KLQQAKDEIAEWESRVTQYERDFERISA  187 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666665555433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p

Probab=97.10  E-value=0.2  Score=49.18  Aligned_cols=71  Identities=15%  Similarity=0.179  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712          133 QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA----LLSELESLRQEYHHCRGTYEYEKKFYNDHLE  203 (503)
Q Consensus       133 eqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~----l~~EIe~L~qELq~lR~ele~ekk~~~el~e  203 (503)
                      ..+-.-++.+-..|..+-...+.+..+|.+++..+.++..    ....+..++.||+.++...+.+++.++.+.+
T Consensus        97 ~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~  171 (216)
T cd07627          97 IRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSE  171 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555566666666677777777776666665532    2456778888888888887777777766554

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in

>PTZ00464 SNF-7-like protein; Provisional

Probab=97.09  E-value=0.12  Score=50.92  Aligned_cols=23  Identities=4%  Similarity=0.039  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLA   73 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa   73 (503)
                      +.+.+..+.+.+..|..+..+|.
T Consensus        16 ~~d~~~~l~~r~~~l~kKi~~ld   38 (211)
T PTZ00464         16 LEDASKRIGGRSEVVDARINKID   38 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445444444444444443333

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.09  E-value=0.077  Score=59.89  Aligned_cols=33  Identities=12%  Similarity=0.311  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      .+|++++..|..|+.++..-..++..+..+|..
T Consensus       160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~  192 (660)
T KOG4302|consen  160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKS  192 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555554444444444444443

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=97.08  E-value=0.16  Score=57.29  Aligned_cols=65  Identities=11%  Similarity=0.160  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch----HHHHHHHHHHHHHHHHHH
Q 010712           55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK----SERELQMRNLTEKIAKME  119 (503)
Q Consensus        55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lk----ae~E~el~eL~eki~kLE  119 (503)
                      |..++.+-..|+..+.....+-..++.+|+.+++.+..|.+-|-++.    ..+...+.++.++++..+
T Consensus       838 ~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~a~  906 (1480)
T COG3096         838 IRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQ  906 (1480)
T ss_pred             HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence            33333333333334444444445555555555555555555443321    233344555555554443

>PF14992 TMCO5: TMCO5 family

Probab=97.07  E-value=0.024  Score=57.56  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712           65 LATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (503)
Q Consensus        65 Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~   99 (503)
                      |+.+.++|.+....|-++|......+++|..+|..
T Consensus         9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~   43 (280)
T PF14992_consen    9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITK   43 (280)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666666666666666666555543

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.18  Score=52.04  Aligned_cols=59  Identities=17%  Similarity=0.162  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHL-------ESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       170 i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~-------eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      ......||++-+.++.+|+..|..+-..+.+..       +.+..+|.+++....-+++-..+|.+
T Consensus       194 ~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~k  259 (297)
T KOG0810|consen  194 AKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKK  259 (297)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677777777777777666655544333       33444444444444444444444443

>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.2  Score=53.09  Aligned_cols=86  Identities=15%  Similarity=0.215  Sum_probs=38.3

Q ss_pred             CCCC-CCCCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhcc
Q 010712           36 PGAF-PPFDMMPPP----EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAA-----------AQHELQILHGQIGG   99 (503)
Q Consensus        36 ~~~~-~p~~~~p~p----~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~-----------lq~EL~~L~~qL~~   99 (503)
                      ++-| +|..++--+    ..|..+=..+...+..+..+...|+..+..+.+++..           ....+..|+..|.+
T Consensus       277 e~~y~~p~gy~lv~dt~w~~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSq  356 (542)
T KOG0993|consen  277 EELYSEPIGYPLVLDTLWFILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQ  356 (542)
T ss_pred             hhhcCCCCCCCcChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            5555 444444444    2344442333444444444444444444443333332           23345555555555


Q ss_pred             chHHHHHHHHHHHHHHHHHHHH
Q 010712          100 MKSERELQMRNLTEKIAKMEAE  121 (503)
Q Consensus       100 lkae~E~el~eL~eki~kLEaE  121 (503)
                      ++.+.+.++..|...-..+..|
T Consensus       357 aq~~vq~qma~lv~a~e~i~~e  378 (542)
T KOG0993|consen  357 AQSEVQKQMARLVVASETIADE  378 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555444433333333

>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins

Probab=97.05  E-value=0.17  Score=49.45  Aligned_cols=48  Identities=17%  Similarity=0.186  Sum_probs=31.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG   95 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~   95 (503)
                      ...++.++..++..+++|..+..++...+..+..--......+..+-.
T Consensus         4 f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~   51 (216)
T cd07599           4 FEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYD   51 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            356777888888888888888888777776665444444444444443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo

>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2

Probab=97.05  E-value=0.41  Score=47.82  Aligned_cols=65  Identities=9%  Similarity=0.104  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010712          138 EAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA--LLSELESLRQEYHHCRGTYEYEKKFYNDHL  202 (503)
Q Consensus       138 ELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~--l~~EIe~L~qELq~lR~ele~ekk~~~el~  202 (503)
                      -++.+-.+|..+-...+.+..+|++.+..+.++..  -...|..++.|+..++......++.++.+.
T Consensus       120 svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is  186 (234)
T cd07664         120 AVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQIS  186 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555555555544443333311  123455555666666555555555555444

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=97.04  E-value=0.043  Score=55.09  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          136 KTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (503)
Q Consensus       136 raELqqL~~erqeLe~qiq~L~~ELqrlk  164 (503)
                      ..+++.+..++..|+.+...+...+++|.
T Consensus        39 eek~k~aeeea~~Le~k~~eaee~~~rL~   67 (246)
T PF00769_consen   39 EEKLKQAEEEAEELEQKRQEAEEEKQRLE   67 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444433

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=97.04  E-value=0.0094  Score=68.44  Aligned_cols=55  Identities=18%  Similarity=0.161  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010712          153 VHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV  207 (503)
Q Consensus       153 iq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqe  207 (503)
                      ++.|..++..++++++++.....++...+.++.+++++.+..+..+..+.++.++
T Consensus       341 v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e  395 (726)
T PRK09841        341 YRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQE  395 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444433333444444444555555544444444444444433

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=97.03  E-value=0.24  Score=49.79  Aligned_cols=87  Identities=13%  Similarity=0.178  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHH
Q 010712          134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE-SLQVMEKNY  212 (503)
Q Consensus       134 qLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e-qlqemEk~L  212 (503)
                      .+-.-|+.+-.+|..++.+++.+.+.+.+.+.+.   ..+..||++++.+++.+...++.+   ++..++ ..+++...+
T Consensus       146 ~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr---~~~~~ev~~~e~kve~a~~~~k~e---~~Rf~~~k~~D~k~~~  219 (243)
T cd07666         146 LYSETLMGVIKRRDQIQAELDSKVEALANKKADR---DLLKEEIEKLEDKVECANNALKAD---WERWKQNMQTDLRSAF  219 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            3333444445555566666666666665554443   245556666666665554443322   222221 234555555


Q ss_pred             HHHHHHHHHHHHHH
Q 010712          213 ITMATEVEKLRAEL  226 (503)
Q Consensus       213 ~sm~rEIekLraEL  226 (503)
                      +.+.....++..++
T Consensus       220 ~~yae~~i~~~~~~  233 (243)
T cd07666         220 TDMAENNISYYEEC  233 (243)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555444444444

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=97.02  E-value=0.08  Score=54.74  Aligned_cols=16  Identities=19%  Similarity=0.339  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHhcc
Q 010712          215 MATEVEKLRAELMNAP  230 (503)
Q Consensus       215 m~rEIekLraELekle  230 (503)
                      |-.|+++..-.+++++
T Consensus       246 l~selkkivf~~enie  261 (401)
T PF06785_consen  246 LVSELKKIVFKVENIE  261 (401)
T ss_pred             HHHHHHHHHHHHhhHH
Confidence            3344455444444443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=97.01  E-value=0.042  Score=50.75  Aligned_cols=41  Identities=12%  Similarity=0.110  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712           55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG   95 (503)
Q Consensus        55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~   95 (503)
                      +....+=|-.|....++-....+.|..++..+..++..+..
T Consensus        33 ~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~   73 (151)
T PF11559_consen   33 DVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQN   73 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            33333334444444444444444444444444444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0992 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.29  Score=53.18  Aligned_cols=17  Identities=24%  Similarity=0.270  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHhccc
Q 010712          215 MATEVEKLRAELMNAPN  231 (503)
Q Consensus       215 m~rEIekLraELekle~  231 (503)
                      ...-|+.|..||.+.+.
T Consensus       401 ~a~tikeL~~El~~yrr  417 (613)
T KOG0992|consen  401 HAETIKELEIELEEYRR  417 (613)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34455666666665543

>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]

Probab=97.00  E-value=0.12  Score=53.00  Aligned_cols=27  Identities=19%  Similarity=0.163  Sum_probs=10.8

Q ss_pred             HHHHHHHHhccccccccCCCCCCCCCC
Q 010712          220 EKLRAELMNAPNVDRRADGSYGGATGN  246 (503)
Q Consensus       220 ekLraELekle~el~~~~~~y~~~~~~  246 (503)
                      +.+++.+.-|+.++..+-+-|-+.+-|
T Consensus       193 e~qk~tv~~Leaev~~~K~~Y~~slrn  219 (426)
T KOG2008|consen  193 EQQKKTVDDLEAEVTLAKGEYKMSLRN  219 (426)
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            333333334444443333444444433

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=96.99  E-value=0.068  Score=55.24  Aligned_cols=56  Identities=20%  Similarity=0.225  Sum_probs=36.6

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           43 DMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        43 ~~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      +|......+|+++....-.-..|..+...|.-+++.|+.+|..++..+..++.++.
T Consensus        81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~  136 (302)
T PF09738_consen   81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR  136 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566677777777666666666666666666666666666666666666666654

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=96.99  E-value=0.027  Score=55.56  Aligned_cols=12  Identities=0%  Similarity=0.171  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHV   60 (503)
Q Consensus        49 ~~LEqeIe~~~~   60 (503)
                      ..|..+++....
T Consensus        63 ~~l~~E~~R~~~   74 (221)
T PF05700_consen   63 PLLQAELERVAS   74 (221)
T ss_pred             hhHHHHHHHHHc
Confidence            345555554444

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=96.95  E-value=0.039  Score=55.84  Aligned_cols=62  Identities=13%  Similarity=0.155  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       170 i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      +...+.|++.+..++.+.+.+++.++..+.+...++..++.+...|.+.|..++..|+++..
T Consensus       202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~  263 (269)
T PF05278_consen  202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHG  263 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45556777777888888888888888888888888888888888888888888888888754

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=96.95  E-value=0.036  Score=55.68  Aligned_cols=35  Identities=17%  Similarity=0.312  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      |..++..+..++..|...+.....+...|..+|..
T Consensus        80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~  114 (246)
T PF00769_consen   80 LEQELREAEAEIARLEEESERKEEEAEELQEELEE  114 (246)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455555554444444444444444443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=96.95  E-value=0.056  Score=58.70  Aligned_cols=22  Identities=5%  Similarity=0.280  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQR   71 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqr   71 (503)
                      .++.+|..+..+++..+...+.
T Consensus       199 ~l~~~l~~lr~~~~~ae~~~~~  220 (458)
T COG3206         199 SLDERLEELRARLQEAEAQVED  220 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666655555554444

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.19  Score=51.15  Aligned_cols=53  Identities=17%  Similarity=0.204  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      |..|++.|.++..-++.+-..+.+.-+.+..+|.+++.....++.-...|.++
T Consensus       182 I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA  234 (269)
T KOG0811|consen  182 IEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKA  234 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444455555555555555555555555443

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=96.95  E-value=0.39  Score=50.58  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          207 VMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       207 emEk~L~sm~rEIekLraELekle  230 (503)
                      .+.++.+.|.+|+++.++||+.++
T Consensus       353 aLrkerd~L~keLeekkreleql~  376 (442)
T PF06637_consen  353 ALRKERDSLAKELEEKKRELEQLK  376 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444433

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]

Probab=96.95  E-value=0.22  Score=53.01  Aligned_cols=39  Identities=10%  Similarity=0.080  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       196 k~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      +.+.+..+-..+++..+..+.+||.+....|+.+++.++
T Consensus       278 ~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~air  316 (421)
T KOG2685|consen  278 KRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIR  316 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            344444455555555555666666666666666655554

>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B

Probab=96.94  E-value=0.51  Score=48.01  Aligned_cols=56  Identities=16%  Similarity=0.109  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010712          136 KTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEK  195 (503)
Q Consensus       136 raELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ek  195 (503)
                      +..|+.++..++.|..+|+.|+..    ..+..+|..|++||-.++.|....+.+|...+
T Consensus       137 E~sl~p~R~~r~~l~d~I~kLk~k----~P~s~kl~~LeqELvraEae~lvaEAqL~n~k  192 (271)
T PF13805_consen  137 EESLQPSRDRRRKLQDEIAKLKYK----DPQSPKLVVLEQELVRAEAENLVAEAQLSNIK  192 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence            334444444444444444433221    12233556666666666665555555555443

>PRK11519 tyrosine kinase; Provisional

Probab=96.94  E-value=0.016  Score=66.50  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=8.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHH
Q 010712          182 QEYHHCRGTYEYEKKFYNDHLE  203 (503)
Q Consensus       182 qELq~lR~ele~ekk~~~el~e  203 (503)
                      .++.+++++.+..++.+..+.+
T Consensus       370 ~~~~~L~Re~~~~~~lY~~lL~  391 (719)
T PRK11519        370 QEIVRLTRDVESGQQVYMQLLN  391 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]

Probab=96.94  E-value=0.07  Score=60.48  Aligned_cols=100  Identities=13%  Similarity=0.249  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhh-----------hHHHHHHHHHHHHHHHHHHhhHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT-DVQQ-----------IPALLSELESLRQEYHHCRGTYEYE  194 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~-elqq-----------i~~l~~EIe~L~qELq~lR~ele~e  194 (503)
                      .++.+...++.+++.+..+.+.+..++++|..+|.+.+. ++..           -..++.++...+.++++...-+..-
T Consensus       999 efE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~~~ed 1078 (1424)
T KOG4572|consen  999 EFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDGKCED 1078 (1424)
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhhhhhh
Confidence            344444444555555555555555555555555532111 1110           1233444555555555444332222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       195 kk~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      +.+..+..+-+  ++.+++.+..|+++|+..+..
T Consensus      1079 rakqkei~k~L--~ehelenLrnEieklndkIkd 1110 (1424)
T KOG4572|consen 1079 RAKQKEIDKIL--KEHELENLRNEIEKLNDKIKD 1110 (1424)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence            22222222222  234566777777777776654

>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.94  E-value=0.41  Score=51.52  Aligned_cols=21  Identities=14%  Similarity=0.071  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010712          206 QVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       206 qemEk~L~sm~rEIekLraEL  226 (503)
                      .+.++++.++..+++++++..
T Consensus       187 ~e~~e~~~s~~~~~k~~k~~a  207 (438)
T COG4487         187 KENEEQRESKWAILKKLKRRA  207 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555544433

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=96.93  E-value=0.31  Score=48.26  Aligned_cols=18  Identities=11%  Similarity=0.196  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010712           60 VEMQKLATENQRLAATHG   77 (503)
Q Consensus        60 ~EIq~Le~enqrLa~e~~   77 (503)
                      ++|..+..++..|+.+..
T Consensus        22 ~el~~f~keRa~iE~eYa   39 (236)
T cd07651          22 EELRSFYKERASIEEEYA   39 (236)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=96.93  E-value=0.059  Score=57.44  Aligned_cols=51  Identities=18%  Similarity=0.244  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle  230 (503)
                      |..|......+...++..+..+..+.+.   |.++++.+...+++|...|++|+
T Consensus       338 l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L~  388 (388)
T PF04912_consen  338 LSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKLQ  388 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccC
Confidence            4444444444444444444444444433   66777778888888888887763

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2

Probab=96.92  E-value=0.5  Score=46.68  Aligned_cols=29  Identities=10%  Similarity=0.139  Sum_probs=17.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010712          169 QIPALLSELESLRQEYHHCRGTYEYEKKF  197 (503)
Q Consensus       169 qi~~l~~EIe~L~qELq~lR~ele~ekk~  197 (503)
                      ++..++.||.+++...+.++.+++.+.+.
T Consensus       150 K~~~~~~ev~~~e~~~~~a~~~fe~is~~  178 (224)
T cd07623         150 KLDQAQQEIKEWEAKVDRGQKEFEEISKT  178 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666666666665555433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=96.89  E-value=0.086  Score=56.10  Aligned_cols=16  Identities=6%  Similarity=0.081  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010712          130 LEFQKSKTEAQNLVVA  145 (503)
Q Consensus       130 ~ELeqLraELqqL~~e  145 (503)
                      +||++++.+|+++..+
T Consensus       309 kelE~lR~~L~kAEke  324 (575)
T KOG4403|consen  309 KELEQLRVALEKAEKE  324 (575)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4555555555544433

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.89  E-value=0.056  Score=54.17  Aligned_cols=53  Identities=26%  Similarity=0.328  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELES  179 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~  179 (503)
                      .|..++..++.+++.+......++..++.++++|..++.++.++...+.+|.-
T Consensus        53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p  105 (251)
T PF11932_consen   53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP  105 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555566666666666666666666666666666666666666555555444

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.89  E-value=0.039  Score=59.67  Aligned_cols=30  Identities=17%  Similarity=0.008  Sum_probs=17.8

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010712          180 LRQEYHHCRGTYEYEKKFYNDHLESLQVME  209 (503)
Q Consensus       180 L~qELq~lR~ele~ekk~~~el~eqlqemE  209 (503)
                      +.+.++++..+.+.+.+....++.++.+|+
T Consensus       464 ~~e~~e~lt~~~e~l~~Lv~Ilk~d~edi~  493 (508)
T KOG3091|consen  464 LIEMKEHLTQEQEALTKLVNILKGDQEDIK  493 (508)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            333445555555666666666666666665

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=96.89  E-value=0.014  Score=53.18  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       192 e~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +.+++.++.+.+.++++++++..+.++++.+...|..+
T Consensus        97 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l  134 (140)
T PRK03947         97 EILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL  134 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=96.89  E-value=0.011  Score=57.73  Aligned_cols=32  Identities=22%  Similarity=0.074  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (503)
Q Consensus       134 qLraELqqL~~erqeLe~qiq~L~~ELqrlk~  165 (503)
                      +|+.+.++|+.+.+++..+++.|+.+++.++.
T Consensus       136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884        136 GLKEENQKLKNQLIVAQKKVDAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555554444443

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=96.88  E-value=0.14  Score=48.20  Aligned_cols=11  Identities=0%  Similarity=0.326  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 010712          217 TEVEKLRAELM  227 (503)
Q Consensus       217 rEIekLraELe  227 (503)
                      ..+..+...|+
T Consensus       140 ~dl~~v~~~~e  150 (159)
T PF05384_consen  140 GDLQQVSEQIE  150 (159)
T ss_pred             hhHHHHHHHHH
Confidence            33333333333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=96.88  E-value=0.066  Score=57.29  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk  164 (503)
                      ++.+...++++.+.+...++++..++.++.+++..++
T Consensus       366 l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~  402 (493)
T KOG0804|consen  366 LKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER  402 (493)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444455555554444443

>KOG0992 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.24  Score=53.77  Aligned_cols=13  Identities=8%  Similarity=-0.189  Sum_probs=5.8

Q ss_pred             HHHHHHHhccccc
Q 010712          221 KLRAELMNAPNVD  233 (503)
Q Consensus       221 kLraELekle~el  233 (503)
                      ++..-|..|..++
T Consensus       400 K~a~tikeL~~El  412 (613)
T KOG0992|consen  400 KHAETIKELEIEL  412 (613)
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444444444

>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.29  Score=53.85  Aligned_cols=23  Identities=13%  Similarity=0.390  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712           52 EQKIASQHVEMQKLATENQRLAA   74 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~   74 (503)
                      .+++..+...|.+|+..+.++..
T Consensus       273 ~~~f~e~~~~i~~l~~~l~~l~~  295 (503)
T KOG2273|consen  273 DKEFTEKKEKIDKLEQQLKKLSK  295 (503)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555544444433

>PRK09343 prefoldin subunit beta; Provisional

Probab=96.83  E-value=0.021  Score=51.32  Aligned_cols=32  Identities=13%  Similarity=0.101  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      ++.+..+++.++++...+.+.+++++..|.++
T Consensus        80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l  111 (121)
T PRK09343         80 KELLELRSRTLEKQEKKLREKLKELQAKINEM  111 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555555555555566666666555554

>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells

Probab=96.82  E-value=0.65  Score=46.56  Aligned_cols=50  Identities=22%  Similarity=0.263  Sum_probs=28.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           45 MPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        45 ~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      -|-++.-=++|....++|+.|+.++......+..+   |.....+|..+...|
T Consensus         6 dprVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~---l~e~~~kL~~~~kkL   55 (239)
T PF05276_consen    6 DPRVQEELEKLNQATDEINRLENELDEARATFRRL---LSESTKKLNELAKKL   55 (239)
T ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            45565555677778888888887666555544333   333333444443333

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=96.81  E-value=0.04  Score=48.35  Aligned_cols=40  Identities=15%  Similarity=0.145  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       195 kk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      .+.++.+..+++-.++++..++++.++.+..|.++++...
T Consensus        75 ~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q  114 (120)
T KOG3478|consen   75 GKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ  114 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455566666667777777777777777777777766543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=96.81  E-value=0.058  Score=57.18  Aligned_cols=11  Identities=18%  Similarity=0.145  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHH
Q 010712          128 VKLEFQKSKTE  138 (503)
Q Consensus       128 Lk~ELeqLraE  138 (503)
                      |++|..++..|
T Consensus        60 Lq~e~~~l~e~   70 (459)
T KOG0288|consen   60 LQEENTQLNEE   70 (459)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>PTZ00464 SNF-7-like protein; Provisional

Probab=96.81  E-value=0.16  Score=50.00  Aligned_cols=31  Identities=10%  Similarity=0.109  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTL   79 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~L   79 (503)
                      ..|+.+++.+..+|..|..++.++...+...
T Consensus        21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~   51 (211)
T PTZ00464         21 KRIGGRSEVVDARINKIDAELMKLKEQIQRT   51 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5566667777777766666666655544433

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=96.80  E-value=0.52  Score=45.09  Aligned_cols=30  Identities=13%  Similarity=0.221  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGT   78 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~   78 (503)
                      ..|.++|..++-|-...+..+..|..+...
T Consensus         7 K~LQeKIrrLELER~qAe~nl~~LS~et~~   36 (178)
T PF14073_consen    7 KNLQEKIRRLELERSQAEDNLKQLSRETSH   36 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            345555555554444444444444444333

>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2

Probab=96.78  E-value=0.68  Score=46.39  Aligned_cols=61  Identities=16%  Similarity=0.166  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHhccccccc
Q 010712          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQV----MEKNYITMATEVEKLRAE-LMNAPNVDRR  235 (503)
Q Consensus       175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqe----mEk~L~sm~rEIekLraE-Lekle~el~~  235 (503)
                      .|++.++..+++++.+++..++.+......+.+    -++.+...-...+.|+.| |.=++.-+|.
T Consensus       154 ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~~fq~lEeeRi~f~k~~lw~  219 (240)
T cd07672         154 KQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKACEFFEKQECERINFFRNAVWT  219 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555554444444443333332    233333444444444443 3344445664

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=96.78  E-value=0.031  Score=58.31  Aligned_cols=18  Identities=6%  Similarity=-0.001  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 010712          212 YITMATEVEKLRAELMNA  229 (503)
Q Consensus       212 L~sm~rEIekLraELekl  229 (503)
                      +..++.+++..+..|+++
T Consensus       192 ~~~~~a~l~~a~~~l~~~  209 (346)
T PRK10476        192 RAAREAALAIAELHLEDT  209 (346)
T ss_pred             HHHHHHHHHHHHHHhhcC
Confidence            334455555555566554

>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells

Probab=96.77  E-value=0.54  Score=47.15  Aligned_cols=19  Identities=21%  Similarity=0.254  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010712           72 LAATHGTLRQELAAAQHEL   90 (503)
Q Consensus        72 La~e~~~LrqeLa~lq~EL   90 (503)
                      ..++|..|+.+|+.++...
T Consensus        19 atd~IN~lE~~L~~ar~~f   37 (239)
T PF05276_consen   19 ATDEINRLENELDEARATF   37 (239)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444433

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.77  E-value=0.14  Score=56.95  Aligned_cols=8  Identities=0%  Similarity=0.297  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010712          206 QVMEKNYI  213 (503)
Q Consensus       206 qemEk~L~  213 (503)
                      +.+..++.
T Consensus       352 ~~l~~~~~  359 (557)
T COG0497         352 KKLKAELL  359 (557)
T ss_pred             HHHHHHHH
Confidence            33333333

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=96.77  E-value=0.19  Score=55.16  Aligned_cols=47  Identities=17%  Similarity=0.308  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLA--ATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa--~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      +-|-+++.+..++|.+|+.|...+.  .++..+  +|+.-.+.++.+.+++
T Consensus       305 e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kI--KLEKEnkRiadLekev  353 (518)
T PF10212_consen  305 EGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKI--KLEKENKRIADLEKEV  353 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            4456667777777777777665543  333332  3333333344444433

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=96.76  E-value=0.11  Score=55.71  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          204 SLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraELe  227 (503)
                      ++.+++.++...+.++.+++.+|+
T Consensus       228 ~~~~~~~~l~~~~~~l~~~~~~l~  251 (421)
T TIGR03794       228 ELETVEARIKEARYEIEELENKLN  251 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555666666666666666664

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=96.75  E-value=0.088  Score=54.22  Aligned_cols=24  Identities=13%  Similarity=0.079  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          206 QVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       206 qemEk~L~sm~rEIekLraELekl  229 (503)
                      ...+.++..++.+++..+..|+++
T Consensus       182 ~~~~~~~~~~~~~l~~a~~~l~~~  205 (327)
T TIGR02971       182 DLAQAEVKSALEAVQQAEALLELT  205 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            344445555566666666666554

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins

Probab=96.75  E-value=0.56  Score=48.23  Aligned_cols=20  Identities=30%  Similarity=0.416  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 010712          107 QMRNLTEKIAKMEAELKTAE  126 (503)
Q Consensus       107 el~eL~eki~kLEaEL~~le  126 (503)
                      +-.+|...|..+..+|..+.
T Consensus        60 ~q~~lw~~i~el~~~L~~l~   79 (289)
T PF05149_consen   60 QQQELWREIQELERELQDLA   79 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555443

The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum

>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=96.74  E-value=0.2  Score=52.58  Aligned_cols=50  Identities=20%  Similarity=0.274  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      +..+..++...+..+|.+..+..++.++.....+||+..+.-++.+...+
T Consensus       134 ~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~ti  183 (464)
T KOG4637|consen  134 INAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETI  183 (464)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            45566667777777777777777777777777666666665555554444

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.52  Score=54.33  Aligned_cols=28  Identities=25%  Similarity=0.387  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          204 SLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      ++..+++.++.+.+++..|.+.|..+..
T Consensus       775 E~~~lEe~~d~~~ee~~el~a~v~~~~~  802 (984)
T COG4717         775 ELALLEEAIDALDEEVEELHAQVAALSR  802 (984)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444333

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.74  E-value=0.11  Score=52.00  Aligned_cols=34  Identities=18%  Similarity=0.365  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELq  161 (503)
                      ++.++..++.++.++...+++|.--+..+..+|+
T Consensus        82 q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~  115 (251)
T PF11932_consen   82 QEQELASLEQQIEQIEETRQELVPLMEQMIDELE  115 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444455555555555555554444444443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=96.74  E-value=0.042  Score=58.67  Aligned_cols=97  Identities=14%  Similarity=0.119  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVH----QLTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTYEYEKKFYNDH  201 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq----~L~~ELqrlk~elqqi~~l~~E-Ie~L~qELq~lR~ele~ekk~~~el  201 (503)
                      .+..||.+++.....|....+.|..+++    -+.+.|++.+-..++|++...+ ++.-+.|+..|+++|...+.+.+++
T Consensus       216 ~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yq  295 (395)
T PF10267_consen  216 KILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQ  295 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3444444444444444444444444222    2222222222223334444444 2333467777777777766666654


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHH
Q 010712          202 L-ESLQVMEKNYITMATEVEKLR  223 (503)
Q Consensus       202 ~-eqlqemEk~L~sm~rEIekLr  223 (503)
                      . ++.+++++.|+++...|.+|+
T Consensus       296 s~eRaRdi~E~~Es~qtRisklE  318 (395)
T PF10267_consen  296 SYERARDIWEVMESCQTRISKLE  318 (395)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHH
Confidence            4 567899999999999999888

Its function is unknown.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=96.73  E-value=0.14  Score=54.85  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccc
Q 010712          209 EKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       209 Ek~L~sm~rEIekLraELekle~el  233 (503)
                      +.++..++.++..++++|++++..+
T Consensus       226 ~~~~~~~~~~l~~~~~~l~~~~~~l  250 (421)
T TIGR03794       226 EKELETVEARIKEARYEIEELENKL  250 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777777777777776665

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=96.72  E-value=0.79  Score=46.10  Aligned_cols=6  Identities=33%  Similarity=0.307  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 010712          211 NYITMA  216 (503)
Q Consensus       211 ~L~sm~  216 (503)
                      .++.+.
T Consensus       225 ~~i~~~  230 (243)
T cd07666         225 NNISYY  230 (243)
T ss_pred             HHHHHH
Confidence            333333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=96.72  E-value=0.67  Score=45.27  Aligned_cols=10  Identities=20%  Similarity=0.179  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 010712          134 KSKTEAQNLV  143 (503)
Q Consensus       134 qLraELqqL~  143 (503)
                      .+..+|++.+
T Consensus       139 ~a~~~l~kkk  148 (236)
T PF09325_consen  139 NAEKELQKKK  148 (236)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

This is the C-terminal dimerisation domain [].

>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins

Probab=96.70  E-value=0.71  Score=46.39  Aligned_cols=16  Identities=6%  Similarity=0.156  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHhcc
Q 010712          215 MATEVEKLRAELMNAP  230 (503)
Q Consensus       215 m~rEIekLraELekle  230 (503)
                      +.+-.+.++..|+.+.
T Consensus       220 ~~~~~e~~~~~~~~id  235 (261)
T cd07648         220 VGQVHEEFKRQVDELT  235 (261)
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            3444455555555543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.24  Score=56.94  Aligned_cols=64  Identities=16%  Similarity=0.246  Sum_probs=40.3

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhccchH
Q 010712           39 FPPFDMMPPPEVMEQKIASQHVEMQKLATENQRL---AATHGTLRQELAAAQHELQILHGQIGGMKS  102 (503)
Q Consensus        39 ~~p~~~~p~p~~LEqeIe~~~~EIq~Le~enqrL---a~e~~~LrqeLa~lq~EL~~L~~qL~~lka  102 (503)
                      |.|.-.-|++.++-.+|.....+|+.-+.++..+   .++.......|+.++++|..+..+|..+..
T Consensus       174 yKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~~  240 (984)
T COG4717         174 YKPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIRALRD  240 (984)
T ss_pred             cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566667787777777777777776666555443   344444555566677777777776655443

>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

Probab=96.68  E-value=0.84  Score=49.77  Aligned_cols=31  Identities=13%  Similarity=0.102  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          204 SLQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      ++.++.+++..+..++.+|..++.+|.+.++
T Consensus       158 ~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk  188 (448)
T COG1322         158 ERSTLLEEIDRLLGEIQQLAQEAGNLTAALK  188 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3344444444444444444444444444443

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.68  E-value=0.27  Score=55.60  Aligned_cols=14  Identities=14%  Similarity=0.283  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHh
Q 010712          215 MATEVEKLRAELMN  228 (503)
Q Consensus       215 m~rEIekLraELek  228 (503)
                      +...|...++++++
T Consensus       861 ~~~~L~~er~~IeE  874 (1104)
T COG4913         861 LLSHLDHERALIEE  874 (1104)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444444443

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.025  Score=50.66  Aligned_cols=33  Identities=15%  Similarity=0.211  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       196 k~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      +.++.+..+++.++++...+..++++|+++|-+
T Consensus        77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~  109 (119)
T COG1382          77 ERKETLELRIKTLEKQEEKLQERLEELQSEIQK  109 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555555555555544

>KOG2196 consensus Nuclear porin [Nuclear structure]

Probab=96.67  E-value=0.22  Score=49.57  Aligned_cols=23  Identities=30%  Similarity=0.586  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712          199 NDHLESLQVMEKNYITMATEVEK  221 (503)
Q Consensus       199 ~el~eqlqemEk~L~sm~rEIek  221 (503)
                      ...+..++-++.+.-.|++.+++
T Consensus       222 nah~~sLqwl~d~st~~e~k~d~  244 (254)
T KOG2196|consen  222 NAHMDSLQWLDDNSTQLEKKLDK  244 (254)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHH
Confidence            33444444444444444444433

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=96.67  E-value=0.081  Score=51.95  Aligned_cols=76  Identities=16%  Similarity=0.125  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          135 SKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI  213 (503)
Q Consensus       135 LraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~  213 (503)
                      ++..+..++.+++++..+..+|..++.+++.+.+   +++.+|..|+.|+.+|...++.+...+..++++..+++..++
T Consensus       133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~e---e~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E  208 (290)
T COG4026         133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYE---EVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE  208 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence            3334444444444444444444444444443322   223334444444444444444443344444444444444433

>PLN03188 kinesin-12 family protein; Provisional

Probab=96.67  E-value=0.39  Score=57.48  Aligned_cols=43  Identities=14%  Similarity=0.156  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      +++...++++-++++. ++..--++|+-+|+.-+.-.+.|+.+|
T Consensus      1046 e~~l~~er~~w~e~es-~wislteelr~eles~r~l~Ekl~~EL 1088 (1320)
T PLN03188       1046 EKKLEQERLRWTEAES-KWISLAEELRTELDASRALAEKQKHEL 1088 (1320)
T ss_pred             hHHHHHHHHHHHHHhh-hheechHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555444433 222222444444544444444444444

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.053  Score=48.54  Aligned_cols=40  Identities=18%  Similarity=0.182  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712          196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR  235 (503)
Q Consensus       196 k~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~  235 (503)
                      +..+++.++...++.++..+++..++++.++++++.++..
T Consensus        70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~  109 (119)
T COG1382          70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK  109 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666677777777777777777777777777777654

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=96.65  E-value=0.0031  Score=65.21  Aligned_cols=17  Identities=6%  Similarity=0.077  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHHhhHH
Q 010712          176 ELESLRQEYHHCRGTYE  192 (503)
Q Consensus       176 EIe~L~qELq~lR~ele  192 (503)
                      .|..|+..+..+..++.
T Consensus       113 sIS~Lqs~v~~lsTdvs  129 (326)
T PF04582_consen  113 SISDLQSSVSALSTDVS  129 (326)
T ss_dssp             -----HHHHHHHHHHHH
T ss_pred             hHHHHHHhhhhhhhhhh
Confidence            34444444444444433

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=96.65  E-value=0.73  Score=44.81  Aligned_cols=13  Identities=31%  Similarity=0.376  Sum_probs=5.4

Q ss_pred             HHHHHHHHhhhhc
Q 010712           86 AQHELQILHGQIG   98 (503)
Q Consensus        86 lq~EL~~L~~qL~   98 (503)
                      ++.++..++.+++
T Consensus        58 akee~~~~r~~~E   70 (201)
T PF12072_consen   58 AKEEAQKLRQELE   70 (201)
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444433

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=96.63  E-value=0.25  Score=45.70  Aligned_cols=49  Identities=18%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL  222 (503)
Q Consensus       174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekL  222 (503)
                      ..+|..|.+-+++.+.+++.....+++..++-..+-..|..|-.|-+++
T Consensus        97 NreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~  145 (159)
T PF04949_consen   97 NRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERL  145 (159)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444443334444444444443333

This entry represents proteins annotated as RAB6-interacting golgins.

>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function

Probab=96.63  E-value=0.71  Score=44.42  Aligned_cols=21  Identities=29%  Similarity=0.226  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010712          206 QVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       206 qemEk~L~sm~rEIekLraEL  226 (503)
                      .+..+.+..++.|-+.||.-|
T Consensus       156 ~~~qe~i~qL~~EN~~LRelL  176 (181)
T PF05769_consen  156 QEEQEIIAQLETENKGLRELL  176 (181)
T ss_pred             HhHHHHHHHHHHHHHHHHHHH
Confidence            344445556666666666554

One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].

>smart00806 AIP3 Actin interacting protein 3

Probab=96.63  E-value=0.28  Score=52.59  Aligned_cols=19  Identities=32%  Similarity=0.401  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010712           59 HVEMQKLATENQRLAATHG   77 (503)
Q Consensus        59 ~~EIq~Le~enqrLa~e~~   77 (503)
                      ..||+.|..++.-|...+.
T Consensus       154 ~~el~~lrrdLavlRQ~~~  172 (426)
T smart00806      154 RAELKSLQRELAVLRQTHN  172 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3555555555544444333

Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=96.62  E-value=0.17  Score=44.35  Aligned_cols=28  Identities=18%  Similarity=0.169  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLES  204 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eq  204 (503)
                      |.+|+.+|..++..++.+|-...++..+
T Consensus        60 ~~eLqaki~ea~~~le~eK~ak~~l~~r   87 (107)
T PF09304_consen   60 IAELQAKIDEARRNLEDEKQAKLELESR   87 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444454444433333333333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]

Probab=96.62  E-value=0.053  Score=55.15  Aligned_cols=17  Identities=18%  Similarity=0.311  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHhhHH
Q 010712          176 ELESLRQEYHHCRGTYE  192 (503)
Q Consensus       176 EIe~L~qELq~lR~ele  192 (503)
                      +++++..|++.++++++
T Consensus       309 ~L~eVm~e~E~~KqemE  325 (384)
T KOG0972|consen  309 TLDEVMDEIEQLKQEME  325 (384)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444433

>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis

Probab=96.61  E-value=0.96  Score=45.71  Aligned_cols=24  Identities=8%  Similarity=0.245  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLA   73 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa   73 (503)
                      .|.-.++....|.+.+...+.++.
T Consensus        94 klsaavenak~e~~~id~~na~i~  117 (353)
T PF01540_consen   94 KLSAAVENAKNEKKAIDDKNAQID  117 (353)
T ss_pred             HHHHHHHhhhhhhhhhhhhhHHHH
Confidence            333334444444444444444433

M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].

>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins

Probab=96.60  E-value=0.89  Score=47.61  Aligned_cols=17  Identities=24%  Similarity=0.409  Sum_probs=7.4

Q ss_pred             hHHHHHHHHHHHHHHHH
Q 010712          190 TYEYEKKFYNDHLESLQ  206 (503)
Q Consensus       190 ele~ekk~~~el~eqlq  206 (503)
                      .++.+++....+.+-+.
T Consensus       282 diEtL~~~~~~li~ti~  298 (333)
T PF05816_consen  282 DIETLKKAFQNLIETIE  298 (333)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            34444444444444333

TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].

>PRK09343 prefoldin subunit beta; Provisional

Probab=96.60  E-value=0.072  Score=47.83  Aligned_cols=18  Identities=11%  Similarity=-0.254  Sum_probs=6.5

Q ss_pred             HHHhhHHHHHHHHHHHHH
Q 010712          186 HCRGTYEYEKKFYNDHLE  203 (503)
Q Consensus       186 ~lR~ele~ekk~~~el~e  203 (503)
                      -++.+|+.+.+....+.+
T Consensus        82 ~ie~~ik~lekq~~~l~~   99 (121)
T PRK09343         82 LLELRSRTLEKQEKKLRE   99 (121)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=96.59  E-value=0.11  Score=53.45  Aligned_cols=24  Identities=13%  Similarity=0.029  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcccccc
Q 010712          211 NYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       211 ~L~sm~rEIekLraELekle~el~  234 (503)
                      ++.....+++.+++.|+.++..+.
T Consensus       180 ~~~~~~~~~~~~~~~l~~a~~~l~  203 (327)
T TIGR02971       180 DVDLAQAEVKSALEAVQQAEALLE  203 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445556666666666666655543

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=96.59  E-value=0.26  Score=53.54  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712           71 RLAATHGTLRQELAAAQHELQI   92 (503)
Q Consensus        71 rLa~e~~~LrqeLa~lq~EL~~   92 (503)
                      -+..++..|+.++...+..++.
T Consensus       199 ~l~~~l~~lr~~~~~ae~~~~~  220 (458)
T COG3206         199 SLDERLEELRARLQEAEAQVED  220 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555544443333

>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein

Probab=96.57  E-value=0.76  Score=44.14  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712          192 EYEKKFYNDHLESLQVMEKNYI  213 (503)
Q Consensus       192 e~ekk~~~el~eqlqemEk~L~  213 (503)
                      +..++.+.+..+.+.+.+.+..
T Consensus       148 ~~~~~~l~~~lekL~~fd~~~~  169 (204)
T PF04740_consen  148 EKAKKKLQETLEKLRAFDQQSS  169 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhH
Confidence            3333334444444444444333

However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].

>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.57  E-value=0.41  Score=48.49  Aligned_cols=27  Identities=7%  Similarity=0.139  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          205 LQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       205 lqemEk~L~sm~rEIekLraELekle~  231 (503)
                      .+=+-..+.....|++-.+-.|.|.+.
T Consensus       227 NkfLhaklkiadeElEliK~siaKYKq  253 (389)
T KOG4687|consen  227 NKFLHAKLKIADEELELIKMSIAKYKQ  253 (389)
T ss_pred             hHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            333444444455666666655555433

>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins

Probab=96.57  E-value=0.88  Score=44.79  Aligned_cols=31  Identities=6%  Similarity=0.138  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTL   79 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~L   79 (503)
                      ...+.++..++.+..+|..+.......+..|
T Consensus        15 e~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m   45 (211)
T cd07588          15 DEHVNNFNKQQASANRLQKDLKNYLNSVRAM   45 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666665555544444

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=96.57  E-value=0.037  Score=48.68  Aligned_cols=23  Identities=13%  Similarity=0.316  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712          132 FQKSKTEAQNLVVAREELIAKVH  154 (503)
Q Consensus       132 LeqLraELqqL~~erqeLe~qiq  154 (503)
                      ++.++.+++.+...++.|+.++.
T Consensus        12 ~q~~q~~~~~l~~q~~~le~~~~   34 (110)
T TIGR02338        12 LQQLQQQLQAVATQKQQVEAQLK   34 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444433333333333

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]

Probab=96.57  E-value=0.34  Score=48.86  Aligned_cols=46  Identities=15%  Similarity=0.371  Sum_probs=27.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010712          125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI  170 (503)
Q Consensus       125 le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi  170 (503)
                      ++.+..++++++..|..+......|..+|+.-+.+|+++++.++.+
T Consensus       114 Iq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~L  159 (338)
T KOG3647|consen  114 IQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEAL  159 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555556666666666666666666666666666666655544

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=96.56  E-value=0.025  Score=49.26  Aligned_cols=27  Identities=7%  Similarity=0.224  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          202 LESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       202 ~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      ...++.+++++..+.+++.+++.+|.+
T Consensus        76 e~~i~~l~~~~~~l~~~~~elk~~l~~  102 (105)
T cd00632          76 ELRIKRLERQEEDLQEKLKELQEKIQQ  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=96.55  E-value=0.0034  Score=64.97  Aligned_cols=45  Identities=7%  Similarity=0.035  Sum_probs=16.3

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          187 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       187 lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      ....|..++..+..+...+..|...+..+.-.|..|+..|.++|.
T Consensus       110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs  154 (326)
T PF04582_consen  110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES  154 (326)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence            333333333333333444444444444444444444445554444

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=96.54  E-value=0.065  Score=47.13  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          136 KTEAQNLVVAREELIAKVHQLTQDL  160 (503)
Q Consensus       136 raELqqL~~erqeLe~qiq~L~~EL  160 (503)
                      -.+++.++.+++.+..+++.|+.++
T Consensus         9 ~~~~q~~q~~~~~l~~q~~~le~~~   33 (110)
T TIGR02338         9 LAQLQQLQQQLQAVATQKQQVEAQL   33 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.53  E-value=1.6  Score=47.34  Aligned_cols=26  Identities=15%  Similarity=0.299  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHG   77 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~   77 (503)
                      +...+.....++.++.+-++|..++.
T Consensus        29 D~~FE~~~~~f~~~e~e~~kLqkd~k   54 (460)
T KOG3771|consen   29 DEQFEQEERNFNKQEAEGKRLQKDLK   54 (460)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555555554443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.51  E-value=0.21  Score=54.74  Aligned_cols=28  Identities=18%  Similarity=0.082  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          135 SKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       135 LraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      +++|++.+..+.+.|.+.|+.++....+
T Consensus       660 Fk~Elq~~~~~~~~L~~~iET~~~~~~K  687 (741)
T KOG4460|consen  660 FKKELQLIPDQLRHLGNAIETVTMKKDK  687 (741)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444433

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=96.51  E-value=0.25  Score=45.63  Aligned_cols=14  Identities=14%  Similarity=0.316  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHH
Q 010712          107 QMRNLTEKIAKMEA  120 (503)
Q Consensus       107 el~eL~eki~kLEa  120 (503)
                      ++..+..+|+....
T Consensus        85 Ev~~vRkkID~vNr   98 (159)
T PF04949_consen   85 EVEMVRKKIDSVNR   98 (159)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444444443

This entry represents proteins annotated as RAB6-interacting golgins.

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=96.51  E-value=0.11  Score=49.20  Aligned_cols=66  Identities=12%  Similarity=0.124  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010712          132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFY  198 (503)
Q Consensus       132 LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~  198 (503)
                      +..|..++..+.+++++|...+..++.+|..|.+-+ -+++++.+|.+|+.|+...+..|+.++...
T Consensus        81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g~  146 (201)
T KOG4603|consen   81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAGT  146 (201)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333444444444444444444444444444333322 134556666666666666666666665544

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.51  E-value=0.091  Score=59.30  Aligned_cols=86  Identities=14%  Similarity=0.156  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------HH-HHHHHHHHHHHHHHHHhhHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI-----------PA-LLSELESLRQEYHHCRGTYEYE  194 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi-----------~~-l~~EIe~L~qELq~lR~ele~e  194 (503)
                      .|+.++..+...+..+..+..+-..++.++..+|+++-.++..-           .+ ...+++.++.+|..|+.++..-
T Consensus       100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~R  179 (660)
T KOG4302|consen  100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDR  179 (660)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            46666666666666666666666666666666666555544321           11 2356777788887777776666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010712          195 KKFYNDHLESLQVMEKNY  212 (503)
Q Consensus       195 kk~~~el~eqlqemEk~L  212 (503)
                      .+++.++++.+..+-+.|
T Consensus       180 lekv~~~~~~I~~l~~~L  197 (660)
T KOG4302|consen  180 LEKVLELKEEIKSLCSVL  197 (660)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            666666666666665555

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=96.50  E-value=0.82  Score=43.59  Aligned_cols=65  Identities=18%  Similarity=0.341  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712          139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA----LLSELESLRQEYHHCRGTYEYEKKFYNDHLE  203 (503)
Q Consensus       139 LqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~----l~~EIe~L~qELq~lR~ele~ekk~~~el~e  203 (503)
                      +..+-..|..+..+++.+...+.+.+.++.++..    -...|+.++.+|..++.+++.++..++.+..
T Consensus       105 ~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~  173 (218)
T cd07596         105 VKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISE  173 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444555555555555444444332    2345666666666666666666655554443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=96.50  E-value=0.26  Score=50.58  Aligned_cols=16  Identities=25%  Similarity=0.142  Sum_probs=8.9

Q ss_pred             HHHHHHHHhccccccc
Q 010712          220 EKLRAELMNAPNVDRR  235 (503)
Q Consensus       220 ekLraELekle~el~~  235 (503)
                      ++|+-.|..|+..|+.
T Consensus       146 eK~klRLK~LEe~Lk~  161 (351)
T PF07058_consen  146 EKLKLRLKVLEEGLKG  161 (351)
T ss_pred             HHHHHHHHHHHhhccC
Confidence            4455555566666654

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=96.46  E-value=0.78  Score=48.18  Aligned_cols=45  Identities=16%  Similarity=0.166  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE  220 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIe  220 (503)
                      ++.+++.++..++..++.+++.+++...+.+.++.++..++..++
T Consensus       236 ~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~  280 (344)
T PF12777_consen  236 QLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE  280 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            344444444444444444444444444444444444333333333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=96.45  E-value=0.065  Score=48.85  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          193 YEKKFYNDHLESLQVMEKNYITMATEVEKLRAE  225 (503)
Q Consensus       193 ~ekk~~~el~eqlqemEk~L~sm~rEIekLraE  225 (503)
                      .+.+.+..+.+.+..+.+++..+...++++..+
T Consensus       105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  137 (140)
T PRK03947        105 ELEKALEKLEEALQKLASRIAQLAQELQQLQQE  137 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444445555555555555555444

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=96.45  E-value=0.98  Score=44.89  Aligned_cols=11  Identities=27%  Similarity=0.459  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHH
Q 010712          204 SLQVMEKNYIT  214 (503)
Q Consensus       204 qlqemEk~L~s  214 (503)
                      .+++++.....
T Consensus       209 ~~q~le~~ri~  219 (251)
T cd07653         209 KLQELDEKRIN  219 (251)
T ss_pred             HHHHHhHHHHH
Confidence            34444444433

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.44  E-value=1.8  Score=46.78  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712          102 SERELQMRNLTEKIAKMEAELKT  124 (503)
Q Consensus       102 ae~E~el~eL~eki~kLEaEL~~  124 (503)
                      .+.+.-+++|++.+..++.....
T Consensus       251 ~El~~V~~el~~~~~~~~~~~~~  273 (412)
T PF04108_consen  251 QELPDVVKELQERLDEMENNEER  273 (412)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Confidence            35555566666666666665444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=96.43  E-value=0.083  Score=55.07  Aligned_cols=10  Identities=10%  Similarity=0.408  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q 010712           54 KIASQHVEMQ   63 (503)
Q Consensus        54 eIe~~~~EIq   63 (503)
                      ++...+.++.
T Consensus        87 ~l~~a~a~l~   96 (346)
T PRK10476         87 TVAQAQADLA   96 (346)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>COG5293 Predicted ATPase [General function prediction only]

Probab=96.43  E-value=0.64  Score=50.19  Aligned_cols=16  Identities=13%  Similarity=0.059  Sum_probs=9.3

Q ss_pred             hHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQ   63 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq   63 (503)
                      .+.+-++|+.+..++.
T Consensus       195 ~~~~~dKi~~l~s~kK  210 (591)
T COG5293         195 AAEYYDKIQELESKKK  210 (591)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4556666666665544

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=96.42  E-value=0.61  Score=52.22  Aligned_cols=14  Identities=7%  Similarity=-0.042  Sum_probs=5.9

Q ss_pred             HHHHHHHHhccccc
Q 010712          220 EKLRAELMNAPNVD  233 (503)
Q Consensus       220 ekLraELekle~el  233 (503)
                      .+|..-+..|+..+
T Consensus       408 ~~l~~a~~~l~~~l  421 (582)
T PF09731_consen  408 QQLWLAVDALKSAL  421 (582)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33334444444444

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like

Probab=96.41  E-value=0.71  Score=46.64  Aligned_cols=31  Identities=16%  Similarity=0.063  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      +-++...+|+|++..+..-.|+-++-++|++
T Consensus       204 mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~  234 (252)
T cd07675         204 IPQIYKQLQEMDERRTVKLSECYRGFADSER  234 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777888888888888888877777775

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=96.40  E-value=0.077  Score=48.10  Aligned_cols=54  Identities=9%  Similarity=0.211  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          106 LQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       106 ~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      .+|..|..++++..+   ..+.++.|+..++.++.++..+...+...+..|+..|..
T Consensus        68 qRId~vd~klDe~~e---i~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~  121 (126)
T PF07889_consen   68 QRIDRVDDKLDEQKE---ISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE  121 (126)
T ss_pred             HHHHHHHhhHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444433332   223344455555555555555555555555555444443

The region featured in this family is approximately 100 amino acids long.

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.40  E-value=0.43  Score=48.63  Aligned_cols=60  Identities=12%  Similarity=0.092  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA  236 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~~  236 (503)
                      |++-.+++.+++..|-.+..-+.++-.-+.+--+.+.+.+..|+....-++.....|++|
T Consensus       175 ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA  234 (269)
T KOG0811|consen  175 IEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKA  234 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555556666677776666666666666666666777788888888888888888777664

>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]

Probab=96.38  E-value=0.3  Score=49.80  Aligned_cols=14  Identities=36%  Similarity=0.688  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHH
Q 010712          173 LLSELESLRQEYHH  186 (503)
Q Consensus       173 l~~EIe~L~qELq~  186 (503)
                      +..||+.+++|+++
T Consensus       313 Vm~e~E~~KqemEe  326 (384)
T KOG0972|consen  313 VMDEIEQLKQEMEE  326 (384)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444443

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=96.38  E-value=0.093  Score=53.10  Aligned_cols=31  Identities=23%  Similarity=0.306  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q 010712           71 RLAATHGTLRQELAAAQHELQILHGQIGGMK  101 (503)
Q Consensus        71 rLa~e~~~LrqeLa~lq~EL~~L~~qL~~lk  101 (503)
                      .|.+.+.+-...|..-..||..|+.+|..++
T Consensus        72 HLkakLkes~~~l~dRetEI~eLksQL~RMr  102 (305)
T PF15290_consen   72 HLKAKLKESENRLHDRETEIDELKSQLARMR  102 (305)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3333333333444444455555555554433

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=96.37  E-value=0.056  Score=53.10  Aligned_cols=61  Identities=15%  Similarity=0.175  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       173 l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      +..|.+.+..+++.++.+++..++.++...++..++.++.+.+.+|.+.|.+|-.++++++
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i  209 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI  209 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            3344444445555555555555555555555555555555555555555555555555544

>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12)

Probab=96.37  E-value=0.96  Score=46.83  Aligned_cols=21  Identities=19%  Similarity=0.169  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010712           53 QKIASQHVEMQKLATENQRLA   73 (503)
Q Consensus        53 qeIe~~~~EIq~Le~enqrLa   73 (503)
                      |+.++.+.+-..+...+.++.
T Consensus        41 Q~~EQAr~~A~~fA~~ld~~~   61 (301)
T PF06120_consen   41 QNAEQARQEAIEFADSLDELK   61 (301)
T ss_pred             HHHHHHHHHHHHHHHhhHHHH
Confidence            334444444333333333333

>KOG4787 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.28  Score=54.07  Aligned_cols=32  Identities=19%  Similarity=0.306  Sum_probs=15.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTL   79 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~L   79 (503)
                      ...++-+++-+...|.+++.++..|...+..|
T Consensus       334 ~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~  365 (852)
T KOG4787|consen  334 LELAESQVQHLNTKIERLEKTNDHLNKKIVEL  365 (852)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            34445555555555555555554444444444

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.085  Score=57.68  Aligned_cols=8  Identities=13%  Similarity=0.260  Sum_probs=3.0

Q ss_pred             HHHHHhhh
Q 010712           89 ELQILHGQ   96 (503)
Q Consensus        89 EL~~L~~q   96 (503)
                      +|+.++++
T Consensus       603 ~l~~~~ee  610 (741)
T KOG4460|consen  603 DLSYCREE  610 (741)
T ss_pred             HHHHHHHH
Confidence            33333333

>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12)

Probab=96.34  E-value=0.41  Score=49.53  Aligned_cols=11  Identities=18%  Similarity=0.404  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q 010712           72 LAATHGTLRQE   82 (503)
Q Consensus        72 La~e~~~Lrqe   82 (503)
                      ++..++.++.+
T Consensus        53 fA~~ld~~~~k   63 (301)
T PF06120_consen   53 FADSLDELKEK   63 (301)
T ss_pred             HHHhhHHHHHH
Confidence            33333333333

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=96.34  E-value=0.073  Score=45.59  Aligned_cols=11  Identities=9%  Similarity=0.138  Sum_probs=4.0

Q ss_pred             HHHHHHHHHhh
Q 010712          180 LRQEYHHCRGT  190 (503)
Q Consensus       180 L~qELq~lR~e  190 (503)
                      |..+++.+..+
T Consensus        67 L~~~~~~~~~~   77 (106)
T PF01920_consen   67 LEERIEKLEKE   77 (106)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PLN03188 kinesin-12 family protein; Provisional

Probab=96.32  E-value=1.2  Score=53.64  Aligned_cols=21  Identities=14%  Similarity=0.200  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhh
Q 010712           77 GTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        77 ~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      +.|+.||..-+.--+.|+..+
T Consensus      1082 Ekl~~EL~~eK~c~eel~~a~ 1102 (1320)
T PLN03188       1082 EKQKHELDTEKRCAEELKEAM 1102 (1320)
T ss_pred             HHHHHHHHHhHHHHHHHHHHH
Confidence            445555555444444444433

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.32  E-value=2  Score=48.69  Aligned_cols=187  Identities=16%  Similarity=0.193  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccchHHHHHHHHHHHHHH-HHHHHHHHH
Q 010712           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ-IGGMKSERELQMRNLTEKI-AKMEAELKT  124 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q-L~~lkae~E~el~eL~eki-~kLEaEL~~  124 (503)
                      +.+...++-+....-++.++...++...+...++...+.--..|++-+++ |+.+..+.+.+++.-..+| -.-+.++.+
T Consensus       803 QkeE~R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~  882 (1187)
T KOG0579|consen  803 QKEEARQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRA  882 (1187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH


Q ss_pred             Hh-HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-HHHHHhhh------------hhHHHHHHHHHHH
Q 010712          125 AE-PVKLEFQKSKTEAQ---------NLVVAREELIAKVHQLTQDL-QRAHTDVQ------------QIPALLSELESLR  181 (503)
Q Consensus       125 le-~Lk~ELeqLraELq---------qL~~erqeLe~qiq~L~~EL-qrlk~elq------------qi~~l~~EIe~L~  181 (503)
                      ++ .|+.+....+.||.         .++....+++.+.+-++.+. .+++++++            ++..+..|.---+
T Consensus       883 Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~k~ema~iErecLm~K  962 (1187)
T KOG0579|consen  883 FQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDFVMKQQQNLEAMLKRMAEKHKEEMASIERECLMQK  962 (1187)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH


Q ss_pred             HHHHHHHh------hHHHHHHHHHHHHHH------------HHHHHHHHHHH----HHHHHHHHHHHHhccccc
Q 010712          182 QEYHHCRG------TYEYEKKFYNDHLES------------LQVMEKNYITM----ATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       182 qELq~lR~------ele~ekk~~~el~eq------------lqemEk~L~sm----~rEIekLraELekle~el  233 (503)
                      ++|-++|.      +-..++.+..-++++            |...++++..|    +++|+.|...+..-+++|
T Consensus       963 q~LlRarEaaiWElEe~qlqEkhqL~kqqlKDqYflqRhqlL~rHekE~eQmqrynQr~ie~Lk~rqtqerarL 1036 (1187)
T KOG0579|consen  963 QNLLRAREAAIWELEEKQLQEKHQLHKQQLKDQYFLQRHQLLARHEKEMEQMQRYNQREIEDLKRRQTQERARL 1036 (1187)
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=96.29  E-value=0.035  Score=52.32  Aligned_cols=59  Identities=22%  Similarity=0.250  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010712          136 KTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEK  195 (503)
Q Consensus       136 raELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ek  195 (503)
                      ..++.+|+.++.+|..++..|+.+|..+..... ..++..+|..|+.|+..++..|+.++
T Consensus        78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   78 DAEIKELREELAELKKEVKSLEAELASLSSEPT-NEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444433321 12344445555555555555544444

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>COG5293 Predicted ATPase [General function prediction only]

Probab=96.28  E-value=0.35  Score=52.14  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712           53 QKIASQHVEMQKLATENQRLAAT   75 (503)
Q Consensus        53 qeIe~~~~EIq~Le~enqrLa~e   75 (503)
                      ..+....++|+.|..+. +|++.
T Consensus       193 ~~~~~~~dKi~~l~s~k-Kl~e~  214 (591)
T COG5293         193 KCAAEYYDKIQELESKK-KLAEL  214 (591)
T ss_pred             hHHHHHHHHHHHHHHHH-HHHHH
Confidence            34777788888777654 44443

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=96.25  E-value=0.0076  Score=63.91  Aligned_cols=38  Identities=18%  Similarity=0.326  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR  235 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~  235 (503)
                      +.++...+.+++..+..+++++..|...|+.++++.++
T Consensus       153 is~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRR  190 (370)
T PF02994_consen  153 ISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRR  190 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            33334444444444555555555666666666555543

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=96.25  E-value=0.35  Score=43.01  Aligned_cols=28  Identities=14%  Similarity=0.318  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          200 DHLESLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       200 el~eqlqemEk~L~sm~rEIekLraELe  227 (503)
                      ....++..+...+..|..++.++...|.
T Consensus        78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~  105 (126)
T PF13863_consen   78 EKEAEIKKLKAELEELKSEISKLEEKLE  105 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444444443333

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=96.24  E-value=0.055  Score=48.06  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       192 e~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +.+++.++.+.+++.++++++..+..++.+++..|..+
T Consensus        90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~  127 (129)
T cd00890          90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL  127 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455555555556666666666666666666665543

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5

Probab=96.24  E-value=0.0054  Score=58.75  Aligned_cols=69  Identities=19%  Similarity=0.163  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---ccchHHHHHHHHHHHHHHHHHHHH
Q 010712           53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI---GGMKSERELQMRNLTEKIAKMEAE  121 (503)
Q Consensus        53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL---~~lkae~E~el~eL~eki~kLEaE  121 (503)
                      +-+..+...|+.|..++++|..++..|.++-+.+..++......+   ......++.+++.|+..+..++.+
T Consensus         8 q~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d   79 (181)
T PF09311_consen    8 QVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKRED   79 (181)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHT--------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhcccc
Confidence            334455666777777777777777777777777777777666666   333334445555555544444433

This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.095  Score=48.61  Aligned_cols=44  Identities=16%  Similarity=0.259  Sum_probs=26.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712          189 GTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV  232 (503)
Q Consensus       189 ~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~e  232 (503)
                      ..++.+++.++++.+.+++|+++|..+.+.+..+..++..+..+
T Consensus        94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~  137 (145)
T COG1730          94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK  137 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666666666666666666666666666666655443

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=96.23  E-value=0.13  Score=48.44  Aligned_cols=131  Identities=15%  Similarity=0.206  Sum_probs=0.0

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010712           44 MMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK  123 (503)
Q Consensus        44 ~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~  123 (503)
                      ++|-+-.+=+.|+.+..+-+....+...|..+...|..+....+......+..+..+...++.+.++|..++..|+++.+
T Consensus        27 LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r  106 (158)
T PF09744_consen   27 LMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENR  106 (158)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHH
Q 010712          124 TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ-IPALLSELESLRQEY  184 (503)
Q Consensus       124 ~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq-i~~l~~EIe~L~qEL  184 (503)
                      .          |...++.+......|+.+-..|+.+...+.....+ +..++.-|+..+.++
T Consensus       107 ~----------L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~~  158 (158)
T PF09744_consen  107 Q----------LELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDEI  158 (158)
T ss_pred             H----------HHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia

Probab=96.23  E-value=1.1  Score=42.22  Aligned_cols=35  Identities=31%  Similarity=0.386  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712           62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQ   96 (503)
Q Consensus        62 Iq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q   96 (503)
                      |+......++|.+.+..++..|+.+..++.....+
T Consensus        10 ~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~   44 (158)
T PF09486_consen   10 IQRRRRRERRLRARLAAQRRALAAAEAELAEQQAE   44 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555655555555555444333

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=96.22  E-value=0.28  Score=53.10  Aligned_cols=11  Identities=27%  Similarity=0.419  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 010712           82 ELAAAQHELQI   92 (503)
Q Consensus        82 eLa~lq~EL~~   92 (503)
                      +++.++.++..
T Consensus       250 ev~~Ae~rl~~  260 (434)
T PRK15178        250 DVKSAQENLGA  260 (434)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=96.22  E-value=1.2  Score=47.97  Aligned_cols=169  Identities=14%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010712           64 KLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLV  143 (503)
Q Consensus        64 ~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~  143 (503)
                      .|+.+..++.+.-..+-.--+.++-+|+.-+...++++.+++.+-+--.+.-+.|+.-+.-...+...-..|+.....|.
T Consensus       278 ~le~er~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll  357 (488)
T PF06548_consen  278 ELEQERQRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLL  357 (488)
T ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHhhHHHHHH---------------------HHH
Q 010712          144 VAREELIAKVHQLTQDLQRAHTDVQQ---IPALLSELESLRQEYHHCRGTYEYEKK---------------------FYN  199 (503)
Q Consensus       144 ~erqeLe~qiq~L~~ELqrlk~elqq---i~~l~~EIe~L~qELq~lR~ele~ekk---------------------~~~  199 (503)
                      .....+..-|..++....+.-..-..   +..+-+||..|+.|-++=|.-+..+.+                     .+.
T Consensus       358 ~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~  437 (488)
T PF06548_consen  358 ARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLR  437 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712          200 DHLESLQVMEKNYITMATEVEKLRAELMNAPNV  232 (503)
Q Consensus       200 el~eqlqemEk~L~sm~rEIekLraELekle~e  232 (503)
                      +..+.....+++...+++|-+++..+++||++.
T Consensus       438 eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~k  470 (488)
T PF06548_consen  438 EAEEAASVAQERAMDAEQENEKAKKQIEKLKRK  470 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6

Probab=96.22  E-value=0.14  Score=55.18  Aligned_cols=15  Identities=33%  Similarity=0.211  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHH
Q 010712           59 HVEMQKLATENQRLA   73 (503)
Q Consensus        59 ~~EIq~Le~enqrLa   73 (503)
                      ..||+.|..++.-|.
T Consensus       150 ~~Ev~~LRreLavLR  164 (424)
T PF03915_consen  150 LKEVQSLRRELAVLR  164 (424)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444433

In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.

>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A

Probab=96.19  E-value=1  Score=45.62  Aligned_cols=16  Identities=31%  Similarity=0.561  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010712          107 QMRNLTEKIAKMEAEL  122 (503)
Q Consensus       107 el~eL~eki~kLEaEL  122 (503)
                      +++.|..++..|+.+.
T Consensus       145 ~L~~ll~~l~~l~~eR  160 (296)
T PF13949_consen  145 QLRELLNKLEELKKER  160 (296)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444433

>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1

Probab=96.19  E-value=1.6  Score=43.70  Aligned_cols=64  Identities=8%  Similarity=0.026  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010712          139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA--LLSELESLRQEYHHCRGTYEYEKKFYNDHL  202 (503)
Q Consensus       139 LqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~--l~~EIe~L~qELq~lR~ele~ekk~~~el~  202 (503)
                      ++.+-.+|..+-...+.+..+|++.+..+.++..  ....+..++.|+.+++...+..++.++++.
T Consensus       121 VK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is  186 (234)
T cd07665         121 VRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDFERIS  186 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444443333332211  112344455555555555555555444433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization

>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]

Probab=96.19  E-value=1.9  Score=44.58  Aligned_cols=13  Identities=15%  Similarity=0.304  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHh
Q 010712          216 ATEVEKLRAELMN  228 (503)
Q Consensus       216 ~rEIekLraELek  228 (503)
                      -+.|+.+..+|..
T Consensus       217 lrnLE~ISd~IHe  229 (426)
T KOG2008|consen  217 LRNLEMISDEIHE  229 (426)
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444433

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=96.17  E-value=0.1  Score=47.35  Aligned_cols=32  Identities=13%  Similarity=0.218  Sum_probs=19.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLT  157 (503)
Q Consensus       126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~  157 (503)
                      ..++.++.+++.+++.++.....|+.++.+|+
T Consensus        92 ~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie  123 (126)
T PF07889_consen   92 TEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE  123 (126)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44556666666666666666666666666554

The region featured in this family is approximately 100 amino acids long.

>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.17  E-value=1.3  Score=47.88  Aligned_cols=22  Identities=14%  Similarity=0.122  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHhcccccc
Q 010712          213 ITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       213 ~sm~rEIekLraELekle~el~  234 (503)
                      ..|++-+.++..+|+++..+..
T Consensus       363 ~k~~~i~~~~~eeL~~l~eeE~  384 (412)
T PF04108_consen  363 DKMKKIIREANEELDKLREEEQ  384 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777888888888777654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy

>PF14735 HAUS4: HAUS augmin-like complex subunit 4

Probab=96.16  E-value=1.3  Score=44.34  Aligned_cols=19  Identities=11%  Similarity=0.354  Sum_probs=14.3

Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLA   66 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le   66 (503)
                      +..+|+.|......|-..-
T Consensus        42 ~~eiE~~Lk~KC~~Lls~~   60 (238)
T PF14735_consen   42 PREIEERLKKKCFSLLSYH   60 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            6888988888877776543

>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit

Probab=96.15  E-value=0.033  Score=52.07  Aligned_cols=13  Identities=15%  Similarity=0.394  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHH
Q 010712          108 MRNLTEKIAKMEA  120 (503)
Q Consensus       108 l~eL~eki~kLEa  120 (503)
                      +++|++.+..++.
T Consensus        64 L~~Le~~~~~~~~   76 (160)
T PF13094_consen   64 LQELEKNAKALER   76 (160)
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444444333

>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia

Probab=96.14  E-value=1  Score=42.44  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcc
Q 010712           77 GTLRQELAAAQHELQILHGQIGG   99 (503)
Q Consensus        77 ~~LrqeLa~lq~EL~~L~~qL~~   99 (503)
                      ..|+..|..++.++..+...+.+
T Consensus        18 ~rL~~~L~~~r~al~~~~a~~~~   40 (158)
T PF09486_consen   18 RRLRARLAAQRRALAAAEAELAE   40 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555554444433

>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=96.13  E-value=0.38  Score=50.54  Aligned_cols=29  Identities=24%  Similarity=0.210  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           69 NQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        69 nqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      .+.+..+++.+.++...+.+||+..+..+
T Consensus       148 lq~~~~~~er~~~~y~~~~qElq~k~t~~  176 (464)
T KOG4637|consen  148 LQEKSLEYERLYEEYTRTSQELQMKRTAI  176 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444555555444443

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)

Probab=96.13  E-value=1.6  Score=43.04  Aligned_cols=30  Identities=3%  Similarity=0.084  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTLRQ   81 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~Lrq   81 (503)
                      |++.....+.|..|+..+.+|-..+..|-.
T Consensus         3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~   32 (211)
T cd07598           3 DNQTKFIQERITNVEKHFGELCQDFAAYTR   32 (211)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555554444444433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=96.12  E-value=0.15  Score=52.49  Aligned_cols=32  Identities=19%  Similarity=0.257  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQ   81 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrq   81 (503)
                      .++.+++..+.++..++.+...+..++..++.
T Consensus        77 ~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~  108 (334)
T TIGR00998        77 NAELALAKAEANLAALVRQTKQLEITVQQLQA  108 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555444444444443333333

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=96.12  E-value=0.19  Score=57.88  Aligned_cols=14  Identities=0%  Similarity=0.055  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHH
Q 010712          204 SLQVMEKNYITMAT  217 (503)
Q Consensus       204 qlqemEk~L~sm~r  217 (503)
                      +.+++-+.+..+.+
T Consensus       168 ~~~~~ld~I~~~RR  181 (835)
T COG3264         168 EVRDILDQILDTRR  181 (835)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=96.11  E-value=0.29  Score=48.32  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIA  151 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~  151 (503)
                      ++++|..++.+++.+...|+..+.
T Consensus       148 le~~l~~~k~~ie~vN~~RK~~Q~  171 (221)
T PF05700_consen  148 LEKELAKLKKEIEEVNRERKRRQE  171 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455555555554444433

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=96.11  E-value=0.73  Score=43.82  Aligned_cols=167  Identities=14%  Similarity=0.227  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKL  130 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~  130 (503)
                      ++.+++.+..++..++....+|...+....+.+..+......+.           .....|..-+..+-.+......+..
T Consensus        24 ~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~   92 (229)
T PF03114_consen   24 IDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMK-----------SPFEELADALIELGSEFSDDSSLGN   92 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT-----------HHHHHHHHHHHHHHHCTSTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhh-----------HHHHHHHHHHHHHhccccccchhhh


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010712          131 EFQKSKTEAQNLVVAREELIAKVHQ-LTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVME  209 (503)
Q Consensus       131 ELeqLraELqqL~~erqeLe~qiq~-L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemE  209 (503)
                      -+..+..-++.+.....++...++. +..-|.++..+++.+....++.+...-+++.++..++..++....... -++++
T Consensus        93 ~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~-~~~l~  171 (229)
T PF03114_consen   93 ALEKFGEAMQEIEEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSK-EEKLE  171 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-HHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 010712          210 KNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       210 k~L~sm~rEIekLraELekl  229 (503)
                      +.....+..-+.|..+|..+
T Consensus       172 ~a~~~f~~~~~~l~~~l~~l  191 (229)
T PF03114_consen  172 EAKEEFEALNEELKEELPKL  191 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=96.10  E-value=0.58  Score=47.59  Aligned_cols=80  Identities=14%  Similarity=0.210  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 010712          149 LIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNY-------ITMATEVEK  221 (503)
Q Consensus       149 Le~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L-------~sm~rEIek  221 (503)
                      +..+++.++..|..+..+..   .|..+|+..+.||++.++.|+.+++..-..+++...+|.+|       ...-+.+.=
T Consensus       174 ~~~~~~~~~~~l~~l~~de~---~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~y  250 (267)
T PF10234_consen  174 VQQQLQQTQQQLNNLASDEA---NLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDY  250 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            33344444444444444332   34556777777777777777776654433344444444444       344666666


Q ss_pred             HHHHHHhccc
Q 010712          222 LRAELMNAPN  231 (503)
Q Consensus       222 LraELekle~  231 (503)
                      |+.+|++..+
T Consensus       251 Le~qle~~~~  260 (267)
T PF10234_consen  251 LEHQLEEYNR  260 (267)
T ss_pred             HHHHHHHHHH
Confidence            6777666544

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

Probab=96.10  E-value=1.1  Score=45.37  Aligned_cols=31  Identities=26%  Similarity=0.210  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      +.++...+|+|++..+..-+++-..-.++++
T Consensus       205 mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~  235 (253)
T cd07676         205 IPNIFQKIQEMEERRIGRVGESMKTYAEVDR  235 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667777777777666666666555554

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=96.10  E-value=2  Score=44.12  Aligned_cols=15  Identities=33%  Similarity=0.519  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHhc
Q 010712          215 MATEVEKLRAELMNA  229 (503)
Q Consensus       215 m~rEIekLraELekl  229 (503)
                      ..++++.|+.||..|
T Consensus       282 ~~~~~~~l~~ei~~L  296 (297)
T PF02841_consen  282 FQEEAEKLQKEIQDL  296 (297)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            355555555555544

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis

Probab=96.07  E-value=1.9  Score=43.61  Aligned_cols=26  Identities=31%  Similarity=0.472  Sum_probs=14.1

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 010712           54 KIASQHVEM-QKLATENQRLAATHGTL   79 (503)
Q Consensus        54 eIe~~~~EI-q~Le~enqrLa~e~~~L   79 (503)
                      .|......| ..|..+|++++.-+.+|
T Consensus       108 ~id~~na~i~k~lAeeNqKIq~gi~EL  134 (353)
T PF01540_consen  108 AIDDKNAQIDKKLAEENQKIQNGIEEL  134 (353)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhhHHHH
Confidence            344444444 34566666666655544

M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].

>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []

Probab=96.07  E-value=0.55  Score=47.59  Aligned_cols=17  Identities=24%  Similarity=-0.029  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHhcccccc
Q 010712          218 EVEKLRAELMNAPNVDR  234 (503)
Q Consensus       218 EIekLraELekle~el~  234 (503)
                      ++..|+.-|+.|.+.+.
T Consensus       207 ~~~~l~eilE~LmN~l~  223 (268)
T PF11802_consen  207 QLITLREILEILMNKLL  223 (268)
T ss_pred             hhhHHHHHHHHHHHHhc
Confidence            45666666666666654

The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)

Probab=96.07  E-value=1.7  Score=42.83  Aligned_cols=36  Identities=11%  Similarity=0.216  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAA   85 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~   85 (503)
                      .+.+.|+.++..+..|-.....|......|+...+.
T Consensus         8 ~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~   43 (211)
T cd07598           8 FIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDE   43 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            445555555555554444444444444444443333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=96.06  E-value=0.76  Score=46.67  Aligned_cols=64  Identities=13%  Similarity=0.105  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR  235 (503)
Q Consensus       172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~  235 (503)
                      .....|...+.|++.+..+++..++.+.++.+++.++..+|..++.+-.+|...|..+...+.+
T Consensus       197 ~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k  260 (269)
T PF05278_consen  197 EKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK  260 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566667777777777777777777777777777777777777777777766666555543

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=96.05  E-value=0.14  Score=53.07  Aligned_cols=25  Identities=4%  Similarity=0.122  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          205 LQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       205 lqemEk~L~sm~rEIekLraELekl  229 (503)
                      +..++.++...+.++++++..|+++
T Consensus       180 ~~~~~~~l~~~~~~l~~a~~~l~~~  204 (331)
T PRK03598        180 IAQAKASLAQAQAALAQAELNLQDT  204 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3444445555566666666667654

>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []

Probab=96.04  E-value=0.52  Score=53.98  Aligned_cols=19  Identities=16%  Similarity=0.197  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010712          207 VMEKNYITMATEVEKLRAE  225 (503)
Q Consensus       207 emEk~L~sm~rEIekLraE  225 (503)
                      ++.+.++++++.+.+++..
T Consensus       280 q~~~m~esver~~~kl~~~  298 (683)
T PF08580_consen  280 QAQKMCESVERSLSKLQEA  298 (683)
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            3444444455555555554

KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=96.04  E-value=0.52  Score=40.36  Aligned_cols=110  Identities=13%  Similarity=0.123  Sum_probs=0.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010712          119 EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLT--QDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK  196 (503)
Q Consensus       119 EaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~--~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk  196 (503)
                      +.....+..+..++..++..|..|...+.++...+....  ..+..+..-..-+..+...|..++.++..++.+++.++.
T Consensus         1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~   80 (123)
T PF02050_consen    1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE   80 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          197 FYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       197 ~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      .+.+...+.+.++.-+.....+........+.
T Consensus        81 ~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq  112 (123)
T PF02050_consen   81 ELQEARRERKKLEKLKERRREEYQQEEERREQ  112 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]

Probab=96.04  E-value=1.3  Score=44.81  Aligned_cols=154  Identities=15%  Similarity=0.161  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHH
Q 010712           73 AATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE---PVKLEFQKSKTEAQNLVVAREEL  149 (503)
Q Consensus        73 a~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le---~Lk~ELeqLraELqqL~~erqeL  149 (503)
                      ..++...+..|...-+|+...+.--.++..---.-.+.|..++--.+.-+....   .|..--.-++.-|+.+..+.+.+
T Consensus        45 ~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~  124 (338)
T KOG3647|consen   45 EDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSS  124 (338)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          150 IAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       150 e~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      ..++.....+...|...+++   -+.|++.+++.++.|..--=.--..++.++++++++-+....--+.+.-|+..|+..
T Consensus       125 ~~~Lnnvasdea~L~~Kier---rk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~  201 (338)
T KOG3647|consen  125 RAQLNNVASDEAALGSKIER---RKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDR  201 (338)
T ss_pred             HHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=96.03  E-value=1.8  Score=43.03  Aligned_cols=179  Identities=13%  Similarity=0.144  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEP  127 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~  127 (503)
                      +..+...+....+++.+.+.....+..++.+-  ....+++.|+....+-..++...+..++.++.+-..+.......+.
T Consensus        27 i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~--~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ihl~~k~aQae~  104 (280)
T COG5074          27 ILSINKNLSVYEKEINQIDNLHKDLLTEVFEE--QSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIHLANKQAQAEN  104 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhh----------------hhHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQL----------TQDLQRAHTDVQ----------------QIPALLSELESLR  181 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L----------~~ELqrlk~elq----------------qi~~l~~EIe~L~  181 (503)
                      .++.+..+-.+...+.....+-..+.-.+          +.+++..-.+..                +.....+|.++-+
T Consensus       105 ~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~ATEdeve~aInd~nG~qvfsqalL~anr~geAktaL~Evq~Rh  184 (280)
T COG5074         105 VRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEATEDEVEAAINDVNGQQVFSQALLNANRRGEAKTALAEVQARH  184 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCccchHHHHHHhcccchHHHHHHHHHhcCccchHHHHHHHHHHHH


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       182 qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      ++|.+++..+..+..++.+..+.+.+-+++.+...+.++..+..++.
T Consensus       185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~  231 (280)
T COG5074         185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQ  231 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHH

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=96.03  E-value=0.46  Score=48.76  Aligned_cols=141  Identities=16%  Similarity=0.163  Sum_probs=0.0

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010712           43 DMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL  122 (503)
Q Consensus        43 ~~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL  122 (503)
                      ++.=+...|..+|+.++.|-.-|+.-+++-..+++.|.+-+..+++-|-.--... ..-.+.+.++.+|.+....|+.||
T Consensus         4 d~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaa-NavrdYqrq~~elneEkrtLeREL   82 (351)
T PF07058_consen    4 DVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAA-NAVRDYQRQVQELNEEKRTLEREL   82 (351)
T ss_pred             hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHHH
Q 010712          123 KTAEPVKLEFQKSKTE-----------AQNLVVAREELIAKVHQLTQDL----QRAHTDVQQIPALLSELESLRQEY  184 (503)
Q Consensus       123 ~~le~Lk~ELeqLraE-----------LqqL~~erqeLe~qiq~L~~EL----qrlk~elqqi~~l~~EIe~L~qEL  184 (503)
                      .+..-.-..+..+-+-           +++...++.-|+.++|.|...|    ...+.+.|--+.++-.+..|...|
T Consensus        83 ARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~L  159 (351)
T PF07058_consen   83 ARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGL  159 (351)
T ss_pred             HHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=96.03  E-value=0.48  Score=44.63  Aligned_cols=137  Identities=15%  Similarity=0.156  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE  131 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~E  131 (503)
                      ++-+..+.-.|-+.+..+..+.........++..++.+..+|..+....+......-.+|...-+.++.+.+.   |...
T Consensus        21 ~e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~---L~~~   97 (158)
T PF09744_consen   21 EEAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKD---LQSQ   97 (158)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHhhH
Q 010712          132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTY  191 (503)
Q Consensus       132 LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E-Ie~L~qELq~lR~el  191 (503)
                      +..++.+.+.|......+..++..|...-..++.+...+.+-..+ |..+..-+++.+-++
T Consensus        98 v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~~  158 (158)
T PF09744_consen   98 VEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDEI  158 (158)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=96.02  E-value=0.34  Score=47.79  Aligned_cols=115  Identities=10%  Similarity=0.109  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHh
Q 010712          112 TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE--LESLRQEYHHCRG  189 (503)
Q Consensus       112 ~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E--Ie~L~qELq~lR~  189 (503)
                      ....+.|+.|  ++++|+.+.+-+-+.+..+.+.....+.+.+.+...|+....+..........  ++.|+.+|+++..
T Consensus        34 ~~~q~~l~ne--e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~t  111 (230)
T PF03904_consen   34 QKTQMSLENE--EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDT  111 (230)
T ss_pred             HHHHHHHhHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          190 TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       190 ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      +     .....+..++.+..+++++|.+|+.+.....++..+.+
T Consensus       112 d-----e~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~  150 (230)
T PF03904_consen  112 D-----ELKNIAQNEIKKVREENKSMLQEVKQSHEKYQKRQKSM  150 (230)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=95.99  E-value=0.47  Score=48.82  Aligned_cols=125  Identities=13%  Similarity=0.117  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 010712          103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQ  182 (503)
Q Consensus       103 e~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~q  182 (503)
                      +.+.++..++.++..+++   .+..++.++.+++.++..++..+...+.++...+.++++.+.-.++-..-+.+++..+.
T Consensus        77 ~~~~~l~~a~a~l~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~  153 (334)
T TIGR00998        77 NAELALAKAEANLAALVR---QTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARK  153 (334)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHH


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          183 EYHHCRGTYEYEKKFYNDHLESLQ-----VMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       183 ELq~lR~ele~ekk~~~el~eqlq-----emEk~L~sm~rEIekLraELekle  230 (503)
                      ++..++.+++..+.........+.     ..+.++..++.+++.++..|+++.
T Consensus       154 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~~~l~~~~  206 (334)
T TIGR00998       154 ALLSAKAALNAAIQEQLNANQALVRGTPLKKQPAVQEAKERLKTAWLALKRTV  206 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhCcE

>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []

Probab=95.97  E-value=2.2  Score=43.37  Aligned_cols=189  Identities=14%  Similarity=0.122  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhhccchH--------HHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTL--------RQELAAAQHELQILHGQIGGMKS--------ERELQMRNLTEK  114 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~L--------rqeLa~lq~EL~~L~~qL~~lka--------e~E~el~eL~ek  114 (503)
                      ..+..+.+.+|...+=.+..+++..+.-.        ..+|..+..++..|.+++.+.+.        ..+.-+...++.
T Consensus        14 ~~~~~~~l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkee   93 (268)
T PF11802_consen   14 VTDAKEELIKECEELWKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEE   93 (268)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHH


Q ss_pred             HHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHH
Q 010712          115 IAKMEAELKT-AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEY  193 (503)
Q Consensus       115 i~kLEaEL~~-le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~  193 (503)
                      +.++..+++. +..++.+.+.++.++...+.-+.+.+.-+..|.....+++.+.....+ ..-+.+++..+.+++...+.
T Consensus        94 lqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-~rv~~el~~K~~~~k~~~e~  172 (268)
T PF11802_consen   94 LQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-SRVFQELKTKIEKIKEYKEK  172 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhcccccccc-CCCC
Q 010712          194 EKKFYNDHLES----------LQVMEKNYITMATEVEKLRAELMNAPNVDRRA-DGSY  240 (503)
Q Consensus       194 ekk~~~el~eq----------lqemEk~L~sm~rEIekLraELekle~el~~~-~~~y  240 (503)
                      +...+.+..+.          ...-.++...-..++..|+.-|+.|.+.+..+ +-+|
T Consensus       173 Ll~~LgeFLeeHfPlp~~~~~~~Kkk~~~~e~~~~~~~l~eilE~LmN~l~~~p~DpY  230 (268)
T PF11802_consen  173 LLSFLGEFLEEHFPLPDEQGNAKKKKKGEDEPSAQLITLREILEILMNKLLDSPHDPY  230 (268)
T ss_pred             HHHHHHHHHHhcCCCCcccchhhhhhccccccchhhhHHHHHHHHHHHHhcCCCCCCc

The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=95.97  E-value=1.7  Score=42.04  Aligned_cols=156  Identities=15%  Similarity=0.118  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010712           53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEF  132 (503)
Q Consensus        53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~EL  132 (503)
                      .++..+...+.....+++.-..-+-.++++|  ...-+..|-.++.-...+.-.-+..+.+.+..+=+....        
T Consensus        33 ~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~l--y~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y~~--------  102 (189)
T PF10211_consen   33 QDVIQLQEWLDKMLQQRQARETGICPVREEL--YSQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDAYQT--------  102 (189)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccccHHHHHH--HHHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHHHH--------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHH
Q 010712          133 QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYND-HLESLQVMEKN  211 (503)
Q Consensus       133 eqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~e-l~eqlqemEk~  211 (503)
                       ..++.+.-......+.+..+..+..+|..          ++.+++.|..++..++..++..++...+ .....+.+.++
T Consensus       103 -l~~s~~~f~~rk~l~~e~~~~~l~~~i~~----------L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~e  171 (189)
T PF10211_consen  103 -LYESSIAFGMRKALQAEQGKQELEEEIEE----------LEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEE  171 (189)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 010712          212 YITMATEVEKLRAELMNA  229 (503)
Q Consensus       212 L~sm~rEIekLraELekl  229 (503)
                      +..+.+..+.|+.+|+.+
T Consensus       172 i~~lk~~~~ql~~~l~~~  189 (189)
T PF10211_consen  172 IDFLKKQNQQLKAQLEQI  189 (189)
T ss_pred             HHHHHHHHHHHHHHHhcC

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=95.97  E-value=1.9  Score=45.60  Aligned_cols=183  Identities=11%  Similarity=-0.004  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE  126 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le  126 (503)
                      +++.+|++...+..++..|...+..|..++..-..+-+.+.+.|-.++..++.+.+...+-..++..-+....--...+.
T Consensus        59 ~lq~~e~ra~~L~~q~~~L~~~~~NLtkeLN~t~~~K~~imq~ll~~rrdl~rinasfrQcq~d~i~y~n~~Ry~aAIi~  138 (442)
T PF06637_consen   59 RLQATEQRADRLYSQVVGLRASQANLTKELNLTTRAKDAIMQMLLNARRDLDRINASFRQCQADRIQYTNNQRYMAAIIL  138 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhchhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq  206 (503)
                      +-+.=.++++.-.+...+....|..++..|+.|+.+.+.      ....+.+.+-..-...+.+++.+.+..+....+.+
T Consensus       139 sekqc~eqLke~Nksc~al~~~L~~k~Ktle~E~~kek~------vctkdKE~ll~~kr~~e~Q~~~C~k~re~q~qe~Q  212 (442)
T PF06637_consen  139 SEKQCQEQLKEINKSCNALLLMLNQKAKTLEVELAKEKA------VCTKDKEGLLLSKRQVEEQLEECGKAREQQQQERQ  212 (442)
T ss_pred             hHhhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHhccccccc
Q 010712          207 VMEKNYITMATEVEKLR-AELMNAPNVDRR  235 (503)
Q Consensus       207 emEk~L~sm~rEIekLr-aELekle~el~~  235 (503)
                      -.+..++..+.=.-.|. .+++.--..+|+
T Consensus       213 Lae~~lq~vq~~C~pLDkdk~~~~l~~lWR  242 (442)
T PF06637_consen  213 LAEEQLQKVQALCLPLDKDKFETDLRNLWR  242 (442)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHH

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal

Probab=95.96  E-value=1.3  Score=43.14  Aligned_cols=138  Identities=20%  Similarity=0.218  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHH------HHHHHHHHHHHHHHHH
Q 010712           74 ATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-TAEPVKL------EFQKSKTEAQNLVVAR  146 (503)
Q Consensus        74 ~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~-~le~Lk~------ELeqLraELqqL~~er  146 (503)
                      .+..+|-.+|..-.+.|..|...+..-....+.+-..+.++-..|++|+- ++...+.      .|-..=.+|+++..+.
T Consensus         5 ~eY~~lld~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~~~~~~   84 (196)
T PF15272_consen    5 SEYLELLDQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKKSSKQS   84 (196)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh


Q ss_pred             HHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          147 EELIAKVHQLTQDL-QRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT  214 (503)
Q Consensus       147 qeLe~qiq~L~~EL-qrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~s  214 (503)
                      .++...|..|+.+| ......-.++..+..+|..++-..++++.+.+..+..+   +.+++++|..|..
T Consensus        85 ~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~Y---esRI~dLE~~L~~  150 (196)
T PF15272_consen   85 EDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAY---ESRIADLERQLNS  150 (196)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHH

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=95.95  E-value=3.1  Score=45.00  Aligned_cols=182  Identities=13%  Similarity=0.093  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELKTA  125 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL~~l  125 (503)
                      ..|--+|+....-..+++.++..-..--++|.+-|..+-.=-.++-++...++.   ++-..-+.+.+-|..++..-.+.
T Consensus       298 eeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakA  377 (488)
T PF06548_consen  298 EELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKA  377 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010712          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL  205 (503)
Q Consensus       126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eql  205 (503)
                      -.--.+..=+++-..++...+.+-+.++.-|+.+...|+.++..-.+...---+|-..|..++......++......++.
T Consensus       378 g~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~  457 (488)
T PF06548_consen  378 GVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQEN  457 (488)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHhcc
Q 010712          206 QVMEKNYITMAT----EVEKLRAELMNAP  230 (503)
Q Consensus       206 qemEk~L~sm~r----EIekLraELekle  230 (503)
                      ..+.++|+.|.+    ||..|+.-|.+.+
T Consensus       458 ek~~kqiekLK~kh~~Ei~t~kq~laes~  486 (488)
T PF06548_consen  458 EKAKKQIEKLKRKHKMEISTMKQYLAESR  486 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=95.95  E-value=0.027  Score=50.40  Aligned_cols=94  Identities=12%  Similarity=0.126  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhH---------------------------
Q 010712          139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTY---------------------------  191 (503)
Q Consensus       139 LqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~el---------------------------  191 (503)
                      ++++....+.+..+++.|...+..+...+.++......|+.+..+ .....-+                           
T Consensus         1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~   79 (126)
T TIGR00293         1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYY   79 (126)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEE


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          192 --EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       192 --e~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                        ....+.+..+..++..+++.+..+.+++.++++++..+..++
T Consensus        80 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l  123 (126)
T TIGR00293        80 VEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA  123 (126)
T ss_pred             EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []

Probab=95.95  E-value=0.96  Score=45.19  Aligned_cols=170  Identities=19%  Similarity=0.223  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhccchHHHHHHHH-HHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGT---------LRQELAAAQHELQILHGQIGGMKSERELQMR-NLTEKIAKMEA  120 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~---------LrqeLa~lq~EL~~L~~qL~~lkae~E~el~-eL~eki~kLEa  120 (503)
                      |.++|..+-..|+.-......+-..+..         |..+|...-..|++++.+|....+..+..-+ .|.+....++.
T Consensus         6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~Rk~IE~   85 (233)
T PF04065_consen    6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLIEE   85 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHHHHHHHHHHHHH


Q ss_pred             HHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----
Q 010712          121 ELKTAEPVKLE----------FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHH----  186 (503)
Q Consensus       121 EL~~le~Lk~E----------LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~----  186 (503)
                      .|+....++.+          |. ....+.-...++.+....++....+|.+      +++.+..|++.|.....+    
T Consensus        86 ~MErFK~vEkesKtKafSkeGL~-~~~k~dp~e~ek~e~~~wl~~~Id~L~~------QiE~~E~E~E~L~~~~kKkk~~  158 (233)
T PF04065_consen   86 QMERFKVVEKESKTKAFSKEGLM-AASKLDPKEKEKEEARDWLKDSIDELNR------QIEQLEAEIESLSSQKKKKKKD  158 (233)
T ss_pred             HHHHHHHHHHHhcccccchhhhh-cccccCcchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhccCccC


Q ss_pred             --HHhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 010712          187 --CRGTYEYEKKFYNDHLESLQVMEKNYITM------ATEVEKLRAELM  227 (503)
Q Consensus       187 --lR~ele~ekk~~~el~eqlqemEk~L~sm------~rEIekLraELe  227 (503)
                        ....++.++..+..+.-++..||.-|..|      -..|..++..|+
T Consensus       159 ~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~V~~ikedie  207 (233)
T PF04065_consen  159 STKQERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQVEDIKEDIE  207 (233)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH

This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.94  E-value=3.1  Score=45.81  Aligned_cols=186  Identities=16%  Similarity=0.170  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEP  127 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~  127 (503)
                      ...+.+.|..++..+..|...++++......|...+.....-+..+...-.... ++...+..|..-+..+..-+++.. 
T Consensus       276 f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~e~~~-  353 (503)
T KOG2273|consen  276 FTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQLSALEGETD-ELSEALSGLAKVIESLSKLLEKLT-  353 (503)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhh-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---------HHHHhhHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEY---------HHCRGTYEYEKKFY  198 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qEL---------q~lR~ele~ekk~~  198 (503)
                      .+.+...+...+..+....+.+...+.+....++.+......+...+..+..+....         ..++.+++.++..+
T Consensus       354 ~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~  433 (503)
T KOG2273|consen  354 AEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKV  433 (503)
T ss_pred             hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712          199 NDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR  235 (503)
Q Consensus       199 ~el~eqlqemEk~L~sm~rEIekLraELekle~el~~  235 (503)
                      ..+.+.+...+..+......+..--...++.+...+.
T Consensus       434 ~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~~~~d~~  470 (503)
T KOG2273|consen  434 NELEELLALKELELDEISERIRAELERFEESRRQDFK  470 (503)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH

>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B

Probab=95.93  E-value=1.8  Score=44.10  Aligned_cols=170  Identities=13%  Similarity=0.108  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010712           53 QKIASQHVEMQKLATENQRLAATHGTLRQELAA----AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV  128 (503)
Q Consensus        53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~----lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~L  128 (503)
                      .+|..+...-+.+......+..+....-.+|..    ....|.++...+..+..++-.....+...++....-|+.+...
T Consensus        57 r~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~  136 (271)
T PF13805_consen   57 RKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNR  136 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010712          129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM  208 (503)
Q Consensus       129 k~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqem  208 (503)
                      +..|+..+..-++|..++..|+.+--. ...|..|++++.+   ...++...+.+|..+.++  .+|..+......+.++
T Consensus       137 E~sl~p~R~~r~~l~d~I~kLk~k~P~-s~kl~~LeqELvr---aEae~lvaEAqL~n~kR~--~lKEa~~~~f~Al~E~  210 (271)
T PF13805_consen  137 EESLQPSRDRRRKLQDEIAKLKYKDPQ-SPKLVVLEQELVR---AEAENLVAEAQLSNIKRQ--KLKEAYSLKFDALIER  210 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-TT-TTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH---HHHHhhHHHHHHHHhhHH--HHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 010712          209 EKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       209 Ek~L~sm~rEIekLraELek  228 (503)
                      -+++.-+.+-=..|-.+|..
T Consensus       211 aEK~~Ila~~gk~Ll~lldd  230 (271)
T PF13805_consen  211 AEKQAILAEYGKRLLELLDD  230 (271)
T ss_dssp             HHHHHHHHHHHHHHHTTS--
T ss_pred             HHHHHHHHHHHHHHHHhccC

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=95.93  E-value=0.12  Score=44.97  Aligned_cols=104  Identities=13%  Similarity=0.177  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010712           62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS-ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQ  140 (503)
Q Consensus        62 Iq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka-e~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELq  140 (503)
                      ++.+..+.+.|..++..|..++..+..++......+..+.. +-+..+=.+.-.+--....-.....|+..++.+..+++
T Consensus         1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~   80 (105)
T cd00632           1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK   80 (105)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          141 NLVVAREELIAKVHQLTQDLQRAHT  165 (503)
Q Consensus       141 qL~~erqeLe~qiq~L~~ELqrlk~  165 (503)
                      ++......+..++.+++.+|.++..
T Consensus        81 ~l~~~~~~l~~~~~elk~~l~~~~~  105 (105)
T cd00632          81 RLERQEEDLQEKLKELQEKIQQAQK  105 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []

Probab=95.93  E-value=0.61  Score=54.16  Aligned_cols=155  Identities=15%  Similarity=0.195  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712           48 PEVMEQKIASQHVEMQKLATEN-QRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE  126 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~en-qrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le  126 (503)
                      ...++..+..+..++|-...+. ..|++....+-..+-.+-.++..++.+...++.    ++..+++++++++.+-...-
T Consensus        29 ~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~----~~~~v~~~~~~~e~~t~~s~  104 (766)
T PF10191_consen   29 LEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQE----QMASVQEEIKAVEQDTAQSM  104 (766)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhccHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRG--TYEYEKKFYNDHLES  204 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~--ele~ekk~~~el~eq  204 (503)
                      ....+|+.+|..++.....+++....-. |..+|+.+-.. ..+..+...|.++++-|.-+..  +++.-++.++.++++
T Consensus       105 ~~L~~ld~vK~rm~~a~~~L~EA~~w~~-l~~~v~~~~~~-~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nr  182 (766)
T PF10191_consen  105 AQLAELDSVKSRMEAARETLQEADNWST-LSAEVDDLFES-GDIAKIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNR  182 (766)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH


Q ss_pred             HHHH
Q 010712          205 LQVM  208 (503)
Q Consensus       205 lqem  208 (503)
                      +..+
T Consensus       183 LEa~  186 (766)
T PF10191_consen  183 LEAL  186 (766)
T ss_pred             HHHH

COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=95.91  E-value=0.97  Score=43.76  Aligned_cols=126  Identities=16%  Similarity=0.166  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           83 LAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus        83 La~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      |...+.-++.|+.++...+...+.+...|..-...+..-.......+.++..|+.-|+..+..+..++.-......+|..
T Consensus        62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e  141 (188)
T PF05335_consen   62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAE  141 (188)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010712          163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN  211 (503)
Q Consensus       163 lk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~  211 (503)
                      -.+   -|..-+..++.|.+.|...|.+|+..++....-..--.+...+
T Consensus       142 K~q---LLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~~AA~eAkq~  187 (188)
T PF05335_consen  142 KTQ---LLEAAKRRVEELQRQLQAARADYEKTKKAAYKAACAAQEAKQK  187 (188)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc

>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2

Probab=95.89  E-value=2  Score=42.31  Aligned_cols=185  Identities=13%  Similarity=0.045  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH----
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT----  124 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~----  124 (503)
                      ...+.++..++.+..+|..+..+....+..|..--..+.+.|..+=..+..-..+.........+....++.-+.+    
T Consensus        15 e~~e~rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~Y~~~~~~~~~~~~v~e~~d~~~~~~~~~~~~~vL~   94 (211)
T cd07612          15 EQCAMNLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDIYEPDWDGHEDLGAIVEGEDLLWNDYEAKLHDQALR   94 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcccHHHHHHhccHHHHHHHHHHHHHHHHH


Q ss_pred             -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHH-----HHHH
Q 010712          125 -AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE-----KKFY  198 (503)
Q Consensus       125 -le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~e-----kk~~  198 (503)
                       ++.+...+..+++-+.+-...+.+....+..++....+-+.+..+|.....|++..++..+.+-.+|..+     ...+
T Consensus        95 pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~~Ri  174 (211)
T cd07612          95 TMESYMAQFPDVKERVAKRGRKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRELREELPILYDSRI  174 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          199 NDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       199 ~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      .-+.--.+.+-+--....+|+.++-.+|..+...|
T Consensus       175 ~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~l  209 (211)
T cd07612         175 GCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKKL  209 (211)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=95.87  E-value=1.3  Score=42.96  Aligned_cols=156  Identities=13%  Similarity=0.101  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELA--AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA  125 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa--~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~l  125 (503)
                      +.....-|-.+...+..|.....+|...++.......  ..+.........| .-+.-.+.++..+..++..|+..+-.+
T Consensus        22 ~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~L-krKK~~E~ql~q~~~ql~nLEq~~~~i  100 (191)
T PTZ00446         22 NDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILL-KRKKLYEQEIENILNNRLTLEDNMINL  100 (191)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHHHHH-------HHHHHHHHHHHhhHHHH
Q 010712          126 EPVKLEFQKSKTEAQNLVVAREELIA----KVHQLTQDLQRAHTDVQQIPALLSEL-------ESLRQEYHHCRGTYEYE  194 (503)
Q Consensus       126 e~Lk~ELeqLraELqqL~~erqeLe~----qiq~L~~ELqrlk~elqqi~~l~~EI-------e~L~qELq~lR~ele~e  194 (503)
                      +..+...+.+.+--+...+...-...    +|+.|..+|+.......+|.+....-       ++|..||+.|..  +.+
T Consensus       101 E~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~--e~l  178 (191)
T PTZ00446        101 ENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKE--QTM  178 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH--HHH


Q ss_pred             HHHHHHHHHHHHHH
Q 010712          195 KKFYNDHLESLQVM  208 (503)
Q Consensus       195 kk~~~el~eqlqem  208 (503)
                      .+.+  +.+.+-+|
T Consensus       179 ~~~l--l~~~~~~~  190 (191)
T PTZ00446        179 EEKL--LKELIGEM  190 (191)
T ss_pred             HHHH--HHHHhhcc

>PRK12705 hypothetical protein; Provisional

Probab=95.86  E-value=1  Score=49.95  Aligned_cols=146  Identities=11%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVK  129 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk  129 (503)
                      ..++-++....+.+.+.      .+.+.+.++++...+.+++   .++...+.+.+..-+.|..+...|+...+.++..+
T Consensus        34 ~a~~~~~~a~~~a~~~~------~~~~~~~~~~~~~~~~~~e---~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~  104 (508)
T PRK12705         34 EAERILQEAQKEAEEKL------EAALLEAKELLLRERNQQR---QEARREREELQREEERLVQKEEQLDARAEKLDNLE  104 (508)
T ss_pred             HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010712          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES  204 (503)
Q Consensus       130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq  204 (503)
                      .+|...+.+|......+.++..+.....+++..+..+..+-.-++.--++++.|+..+-.+++.+-+...+.+..
T Consensus       105 ~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~~~~a~~~A~  179 (508)
T PRK12705        105 NQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQ  179 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=95.84  E-value=0.66  Score=40.93  Aligned_cols=106  Identities=14%  Similarity=0.104  Sum_probs=0.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-----HHHHHHHHHHHHhhHHHH
Q 010712          120 AELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE-----LESLRQEYHHCRGTYEYE  194 (503)
Q Consensus       120 aEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E-----Ie~L~qELq~lR~ele~e  194 (503)
                      +..++++.+-..++.|+.++.+....|+.|+.++++-+.-+..+..--......+--     -.+|..--..++..|++.
T Consensus         2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI   81 (120)
T KOG3478|consen    2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI   81 (120)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          195 KKFYNDHLESLQVMEKNYITMATEVEKLRAE  225 (503)
Q Consensus       195 kk~~~el~eqlqemEk~L~sm~rEIekLraE  225 (503)
                      .+.+..++.++.++++++..+..+|.++...
T Consensus        82 ~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~  112 (120)
T KOG3478|consen   82 SKEIKRLENQIRDSQEEFEKQREAVIKLQQA  112 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

Probab=95.83  E-value=1.1  Score=48.77  Aligned_cols=152  Identities=16%  Similarity=0.197  Sum_probs=0.0

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010712           43 DMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL  122 (503)
Q Consensus        43 ~~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL  122 (503)
                      +|+-+...+-..+.....    +..+...+......+++....+.+++..+...+.........++..+.+.+.++..+.
T Consensus        32 ~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~  107 (448)
T COG1322          32 QMLGELAAVLEQLLLLLA----FRAEAEQLRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEF  107 (448)
T ss_pred             hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HH-HhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010712          123 KT-AEPVKLEFQKSKTEAQ--NLVVAREELIAKVHQLTQDLQR-AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFY  198 (503)
Q Consensus       123 ~~-le~Lk~ELeqLraELq--qL~~erqeLe~qiq~L~~ELqr-lk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~  198 (503)
                      .. +..+..+..+...++.  .++....=+....+.+++.++. .....++...+..+|..+..+++.+-++...+++.+
T Consensus       108 ~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~L  187 (448)
T COG1322         108 QELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAAL  187 (448)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised

Probab=95.82  E-value=0.0024  Score=69.71  Aligned_cols=120  Identities=16%  Similarity=0.153  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010712           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQE----LAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL  122 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrqe----La~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL  122 (503)
                      ..+..|+||..+++++..+..++++.+.++..-+++    |...+.+|+.-++.|.+.+.++|.+|+.+..++..+|+||
T Consensus       370 ~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeEL  449 (495)
T PF12004_consen  370 EVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEEL  449 (495)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhh


Q ss_pred             H-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          123 K-TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD  166 (503)
Q Consensus       123 ~-~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e  166 (503)
                      + +..++..-|+..+.=|+.....+..|.+.-..|..-|.+|+..
T Consensus       450 rre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~r  494 (495)
T PF12004_consen  450 RREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKER  494 (495)
T ss_dssp             ---------------------------------------------
T ss_pred             hhhHHHHhcccccchHHHHHhhhhccccccccccccccccccccC

This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=95.81  E-value=0.26  Score=57.32  Aligned_cols=116  Identities=18%  Similarity=0.214  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE  131 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~E  131 (503)
                      ++-|+....-+..-..+..+|..++++.+.+++....+++.+..+++.++.+.+.+.++|.++..++.++.++  +++..
T Consensus       501 ~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~a~~~  578 (782)
T PRK00409        501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK--EAQQA  578 (782)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH


Q ss_pred             HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhh
Q 010712          132 FQKSKTEAQNLVVAREE---------LIAKVHQLTQDLQRAHTDVQQ  169 (503)
Q Consensus       132 LeqLraELqqL~~erqe---------Le~qiq~L~~ELqrlk~elqq  169 (503)
                      +.+++.+++++..++.+         ...++++...++.+++..+++
T Consensus       579 l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  625 (782)
T PRK00409        579 IKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK  625 (782)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhhh

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=95.81  E-value=0.15  Score=43.59  Aligned_cols=83  Identities=16%  Similarity=0.213  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-------------------HHHHHHHHHHHHHHHhhHHH
Q 010712          133 QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL-------------------LSELESLRQEYHHCRGTYEY  193 (503)
Q Consensus       133 eqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l-------------------~~EIe~L~qELq~lR~ele~  193 (503)
                      +++..+++.+..++..+..++..|..++.++..-+..|..+                   ..-++.|..+++.+..+++.
T Consensus         1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~   80 (106)
T PF01920_consen    1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK   80 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712          194 EKKFYNDHLESLQVMEKNYITM  215 (503)
Q Consensus       194 ekk~~~el~eqlqemEk~L~sm  215 (503)
                      +++....+.+++++++.+|..+
T Consensus        81 l~~~~~~l~~~l~~~~~~l~~~  102 (106)
T PF01920_consen   81 LEKQLKYLEKKLKELKKKLYEL  102 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PF15358 TSKS: Testis-specific serine kinase substrate

Probab=95.79  E-value=1.5  Score=46.80  Aligned_cols=182  Identities=19%  Similarity=0.190  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELKT  124 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL~~  124 (503)
                      |..|.++-...+.-|+.|..+-.-|.+-++.-+++-+.++.=..+|+....++..   +.|.+...|+..-..||+.|+-
T Consensus       127 ItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~  206 (558)
T PF15358_consen  127 ITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRY  206 (558)
T ss_pred             hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHH


Q ss_pred             Hh---------HHHHHHHHHHHH--------------------------------------------------------H
Q 010712          125 AE---------PVKLEFQKSKTE--------------------------------------------------------A  139 (503)
Q Consensus       125 le---------~Lk~ELeqLraE--------------------------------------------------------L  139 (503)
                      +.         ..+.|+++++..                                                        +
T Consensus       207 lq~qLqdE~prrqe~e~qELeqkleagls~~~l~p~~~~~g~~~p~~s~~~p~~~~~l~~~~~~~~~rage~~~~seq~l  286 (558)
T PF15358_consen  207 LQQQLQDETPRRQEAEWQELEQKLEAGLSRSGLPPTADSTGCPGPPGSPEEPPRPRNLAPAGWGGGPRAGEGPELSEQEL  286 (558)
T ss_pred             HHHHhcccCcchhhhhHHHHHHHHhhhhhhcCCCccccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCccccHHhh


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          140 QNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE----LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM  215 (503)
Q Consensus       140 qqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E----Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm  215 (503)
                      ++.-.-+.+|..++..|...-.+.+-.++++-.+...    ++.+-.+-++...+-......+.++..+..++-.-.+.-
T Consensus       287 qk~~s~LEelRrevssLtarw~qEega~qEaLrlLgglggRldgflgqWERaQ~eq~q~ar~lqeLR~~~delct~vers  366 (558)
T PF15358_consen  287 QKVSSGLEELRREVSSLTARWHQEEGAVQEALRLLGGLGGRLDGFLGQWERAQREQAQTARGLQELRGRADELCTMVERS  366 (558)
T ss_pred             cccCccHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh


Q ss_pred             HHHHHHHHHHHHhc
Q 010712          216 ATEVEKLRAELMNA  229 (503)
Q Consensus       216 ~rEIekLraELekl  229 (503)
                      .--+..|++||+-+
T Consensus       367 avs~asLrseLegl  380 (558)
T PF15358_consen  367 AVSVASLRSELEGL  380 (558)
T ss_pred             HhHHHHHHHHhhcc

>PRK12705 hypothetical protein; Provisional

Probab=95.78  E-value=2.6  Score=46.81  Aligned_cols=168  Identities=13%  Similarity=0.108  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVK  129 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk  129 (503)
                      .+=.....+..+.+.+..+.++-+..+.  ++.+..++.++..++.++++...+...+++.++.++.+.++   .++.-.
T Consensus        23 ~~~~~~~~~~~~a~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~---~l~~~~   97 (508)
T PRK12705         23 VLLKKRQRLAKEAERILQEAQKEAEEKL--EAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEE---QLDARA   97 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHH-HHHhhHHHHHHHHHHHHHHHH
Q 010712          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE--LESLRQEYH-HCRGTYEYEKKFYNDHLESLQ  206 (503)
Q Consensus       130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E--Ie~L~qELq-~lR~ele~ekk~~~el~eqlq  206 (503)
                      .+|+..+.+|.+....+.....+++.+   +++...+++++..+..+  .+.|-.+++ +++.++...-+.+++..+. .
T Consensus        98 ~~l~~~~~~l~~~~~~l~~~~~~~~~~---~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~~~-~  173 (508)
T PRK12705         98 EKLDNLENQLEEREKALSARELELEEL---EKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADL-E  173 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010712          207 VMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       207 emEk~L~sm~rEIekLraEL  226 (503)
                      .-.+...-+..-++++..+.
T Consensus       174 a~~~A~~ii~~aiqr~a~~~  193 (508)
T PRK12705        174 AERKAQNILAQAMQRIASET  193 (508)
T ss_pred             HHHHHHHHHHHHHHHhccch

>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins

Probab=95.78  E-value=1  Score=45.20  Aligned_cols=171  Identities=19%  Similarity=0.215  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHH-------------HHHHhHHHHHHH
Q 010712           70 QRLAATHGTLRQELA---AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAE-------------LKTAEPVKLEFQ  133 (503)
Q Consensus        70 qrLa~e~~~LrqeLa---~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaE-------------L~~le~Lk~ELe  133 (503)
                      ++|.+++..|....+   .+-++|...=.+..+++.+.-..|+.|..+...-..+             +..-..+..+.+
T Consensus         1 ~qL~dQ~~~L~~~te~~i~lLed~~~F~r~RaeIE~EYs~~L~kL~k~~~~K~~~~~~~~~~~~~~s~~~~W~~lL~qt~   80 (241)
T cd07656           1 QQLSEQLKCLDLRTEAQVQLLADLQDYFRRRAEIELEYSRSLEKLADRFSSKHKNEKSKREDWSLLSPVNCWNTLLVQTK   80 (241)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCCHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010712          134 KSKTEAQNLVVAREE-LIAKVHQLTQDLQRAHTDVQQI-PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN  211 (503)
Q Consensus       134 qLraELqqL~~erqe-Le~qiq~L~~ELqrlk~elqqi-~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~  211 (503)
                      .+-.+...+...... +...+..|..++.++......+ ..+..+|...-.||++++..+..+.+........+++++..
T Consensus        81 ~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~  160 (241)
T cd07656          81 QESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQ  160 (241)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHH-----------------HHHHHHHHHHHHHhccccccccCCCC
Q 010712          212 YIT-----------------MATEVEKLRAELMNAPNVDRRADGSY  240 (503)
Q Consensus       212 L~s-----------------m~rEIekLraELekle~el~~~~~~y  240 (503)
                      +..                 ++++++|.+............+-+-|
T Consensus       161 ~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~~~~~~k~~~akNeY  206 (241)
T cd07656         161 EEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKARNEY  206 (241)
T ss_pred             HhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=95.77  E-value=0.58  Score=40.03  Aligned_cols=107  Identities=16%  Similarity=0.176  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH--TDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE  203 (503)
Q Consensus       126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk--~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e  203 (503)
                      +.++.+|..+..++..+...+..|...+..+...+....  ..+..+.....-|..|...+..++.+++.+++.+....+
T Consensus         1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~   80 (123)
T PF02050_consen    1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE   80 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712          204 SLQVMEKNYITMATEVEKLRAELMNAPNV  232 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraELekle~e  232 (503)
                      .+.+...+...++.=+++...+......+
T Consensus        81 ~l~~a~~~~k~~e~L~e~~~~~~~~~~~r  109 (123)
T PF02050_consen   81 ELQEARRERKKLEKLKERRREEYQQEEER  109 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.77  E-value=1.6  Score=42.22  Aligned_cols=141  Identities=12%  Similarity=0.160  Sum_probs=0.0

Q ss_pred             HHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 010712           90 LQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT------AEPVKLEFQKSKTEAQNLVVAREELIAK---VHQLTQDL  160 (503)
Q Consensus        90 L~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~------le~Lk~ELeqLraELqqL~~erqeLe~q---iq~L~~EL  160 (503)
                      |......+.+-...++.+|..|..++.+++.++..      ...|++..-.+-++-+.....+..|..+   ++...--+
T Consensus        17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~   96 (218)
T KOG1655|consen   17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA   96 (218)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh
Q 010712          161 QRAHTDVQQIPALLSELESLRQEYHHCRGT-YEYEKKFYNDHLESLQVMEKNY-----------ITMATEVEKLRAELMN  228 (503)
Q Consensus       161 qrlk~elqqi~~l~~EIe~L~qELq~lR~e-le~ekk~~~el~eqlqemEk~L-----------~sm~rEIekLraELek  228 (503)
                      +.|+....-+.+++.-..+++.+..++..+ |+.++....++.++-.++.+.|           ..+..||..|..|+.-
T Consensus        97 e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~~E~d~  176 (218)
T KOG1655|consen   97 ESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALGQELDM  176 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHhHhhc


Q ss_pred             cc
Q 010712          229 AP  230 (503)
Q Consensus       229 le  230 (503)
                      +.
T Consensus       177 ~~  178 (218)
T KOG1655|consen  177 LE  178 (218)
T ss_pred             cc

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=95.76  E-value=0.28  Score=46.41  Aligned_cols=117  Identities=15%  Similarity=0.220  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010712           59 HVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE  138 (503)
Q Consensus        59 ~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraE  138 (503)
                      ..|++.|..++.+|.+.+.+|++.......||..|...|         -+.+|+++|.+          |++|+...+..
T Consensus        78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L---------t~eemQe~i~~----------L~kev~~~~er  138 (201)
T KOG4603|consen   78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL---------TTEEMQEEIQE----------LKKEVAGYRER  138 (201)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------ChHHHHHHHHH----------HHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHhhHHHH
Q 010712          139 AQNLVVAREELIA-KVHQLTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTYEYE  194 (503)
Q Consensus       139 LqqL~~erqeLe~-qiq~L~~ELqrlk~elqqi~~l~~E-Ie~L~qELq~lR~ele~e  194 (503)
                      |..+++-+..+.- .......+-++...++.++..+-.+ |+.+..-+...+.++-.+
T Consensus       139 l~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~pk~ksel~ee  196 (201)
T KOG4603|consen  139 LKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGLPKKKSELYEE  196 (201)
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH

>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

Probab=95.76  E-value=2.3  Score=44.59  Aligned_cols=180  Identities=13%  Similarity=0.120  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH----HHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS----ERELQMRNLTEKIAKMEAELKT  124 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka----e~E~el~eL~eki~kLEaEL~~  124 (503)
                      ..|-.++.....-+..-..-...|...+...+..|..+...+..|...+-....    ..+..+..|...+.+++.-..+
T Consensus       127 ~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~iPs~~~~~~~~~~~~v~~Lr~ll~kl~~lk~e  206 (337)
T cd09234         127 TELKRELKKYKEAHEKASQSNTELHKAMNLHIANLKLLAGPLDELQKKLPSPSLLDRPEDEAIEKELKRILNKVNEMRKQ  206 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHhhCCCccccCCcccHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712          125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQL-TQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE  203 (503)
Q Consensus       125 le~Lk~ELeqLraELqqL~~erqeLe~qiq~L-~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e  203 (503)
                      ...+..+|.+....-.=....+......++.| .++|.+.....+.|......-+.+..+|..+-.++...++.......
T Consensus       207 R~~l~~~Lk~k~~~DDI~~~ll~~~~~~~e~lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r~~~~~~~~  286 (337)
T cd09234         207 RRSLEQQLRDAIHEDDITSKLVTTTGGDMEDLFKEELKKHDQLVNLIEQNLAAQENILKALTEANAKYAPVRKALSETKQ  286 (337)
T ss_pred             HHHHHHHHHHHhhcCCchHHHHHhcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          204 SLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraELek  228 (503)
                      +...+.+.|...-.....|.+.|++
T Consensus       287 ~Re~~l~~L~~ay~~y~el~~~l~e  311 (337)
T cd09234         287 KRESTISSLIASYEAYEDLLKKSQK  311 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH

This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi

>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase

Probab=95.76  E-value=1.1  Score=44.86  Aligned_cols=174  Identities=14%  Similarity=0.119  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010712           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQ  133 (503)
Q Consensus        54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELe  133 (503)
                      +|...++.|.++...--+|.+++...-.+-+.+..+....-..|             ...-..+-..++.....+..-+.
T Consensus         2 ~l~~~~e~l~k~q~~ei~lLE~i~~f~~eRakiEkEYA~~L~~L-------------~kq~~kk~~~~~~~~s~v~~sW~   68 (234)
T cd07686           2 DLRNSHEALLKLQDWELRLLETVKKFMALRVKSDKEYASTLQNL-------------CNQVDKESTSQLDYVSNVSKSWL   68 (234)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhcccCcccccchhhHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHH
Q 010712          134 KSKTEAQNLVVAREELIAKVHQ-LTQDLQRAHTDVQQIPALLSEL-ESLRQEYHH-CRGTYEYEKKFYNDHLESLQVMEK  210 (503)
Q Consensus       134 qLraELqqL~~erqeLe~qiq~-L~~ELqrlk~elqqi~~l~~EI-e~L~qELq~-lR~ele~ekk~~~el~eqlqemEk  210 (503)
                      .+-.+++.+...+..+...+.. +-.+|..+..+.+++.....++ ..|..|+.+ ...+++..++.+..+.+......+
T Consensus        69 ~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~  148 (234)
T cd07686          69 HMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKE  148 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH


Q ss_pred             HHHHHH---HHHHHHHHHHHhccccccccCCCC
Q 010712          211 NYITMA---TEVEKLRAELMNAPNVDRRADGSY  240 (503)
Q Consensus       211 ~L~sm~---rEIekLraELekle~el~~~~~~y  240 (503)
                      ..+...   ++.++.++.+++...++-.+-+-|
T Consensus       149 K~~~a~~~gk~~~Ka~~k~~~~~~km~~~kN~Y  181 (234)
T cd07686         149 KYKDAVAKGKETEKARERYDKATMKLHMLHNQY  181 (234)
T ss_pred             HHHHhhhcccchHHHHHHHHHHHHHHHhhhhHH

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran

>KOG4787 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.76  E-value=0.55  Score=51.92  Aligned_cols=181  Identities=13%  Similarity=0.152  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKL  130 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~  130 (503)
                      +..+++.+..+++-|.....+++.+.+-|...|..+.....+.-..-+-.+...-.+.-+......++-.-+-++..-+-
T Consensus       330 ~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~  409 (852)
T KOG4787|consen  330 AHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNL  409 (852)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHhcc


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-
Q 010712          131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI-----PALLSELESLRQEYHHCRGTYEYEKKFYNDHLES-  204 (503)
Q Consensus       131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi-----~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq-  204 (503)
                      ++..++.+|+....-..++...-+..+.+|-+++.++.++     .+....+..|++.|+++-..+.-+.-.+..+..+ 
T Consensus       410 ~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q  489 (852)
T KOG4787|consen  410 ELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQ  489 (852)
T ss_pred             cHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHH


Q ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          205 -------------LQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       205 -------------lqemEk~L~sm~rEIekLraELekle~  231 (503)
                                   ++-+|.++.--+.=-.+|.+||+.+++
T Consensus       490 ~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~  529 (852)
T KOG4787|consen  490 VRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIP  529 (852)
T ss_pred             HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=95.75  E-value=0.75  Score=49.31  Aligned_cols=162  Identities=15%  Similarity=0.196  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHH
Q 010712           68 ENQRLAATHGTLRQELAAAQHELQILHGQIGG----MKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE--AQN  141 (503)
Q Consensus        68 enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~----lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraE--Lqq  141 (503)
                      ++..+......+...+..+.....-+..+-..    -..-.+.-+..|.++...++.|.+..+.....|++-..+  ...
T Consensus       101 ~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~  180 (447)
T KOG2751|consen  101 ENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEED  180 (447)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          142 LVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK  221 (503)
Q Consensus       142 L~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIek  221 (503)
                      +..+.+++..+-..|.++|.++..+...   +..++.+++.+..++.++....-+.+....-++-+.++++.+++-+++=
T Consensus       181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~---l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~  257 (447)
T KOG2751|consen  181 LLKELKNLKEEEERLLQQLEELEKEEAE---LDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEY  257 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH


Q ss_pred             HHHHHHhcccc
Q 010712          222 LRAELMNAPNV  232 (503)
Q Consensus       222 LraELekle~e  232 (503)
                      -...|+++.+.
T Consensus       258 s~~qldkL~kt  268 (447)
T KOG2751|consen  258 SQAQLDKLRKT  268 (447)
T ss_pred             HHHHHHHHHhh

>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6

Probab=95.75  E-value=2.3  Score=42.02  Aligned_cols=183  Identities=15%  Similarity=0.156  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV  128 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~L  128 (503)
                      +.-.+.|..++..|+.+.....++...+..+-.....+-.-+..|...-....+..=.++.++.+++.+++..+..-+.+
T Consensus        26 e~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~e~t~L~~~l~~laev~eki~~l~~~~A~~e~l  105 (218)
T cd07662          26 EHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQDSTDICKFFLKVSELFDKTRKIEARVAADEDL  105 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhh


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----
Q 010712          129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES----  204 (503)
Q Consensus       129 k~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq----  204 (503)
                      +  |...-.+...+.....++-.++-..-.+-+.....+.+.....++|.+.+...++++++++.+-+.+......    
T Consensus       106 ~--L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~~kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~  183 (218)
T cd07662         106 K--LSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETTQQLCCQKFEKISESAKQELIDFKTR  183 (218)
T ss_pred             h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             -HHHHHHHHHHH-HHHHHHHHHHHHhccccc
Q 010712          205 -LQVMEKNYITM-ATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       205 -lqemEk~L~sm-~rEIekLraELekle~el  233 (503)
                       +.++.++|+.+ +-+|+-.+..++-+++-+
T Consensus       184 Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~~~  214 (218)
T cd07662         184 RVAAFRKNLVELAELELKHAKGNLQLLQSCL  214 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=95.75  E-value=2.4  Score=42.10  Aligned_cols=171  Identities=13%  Similarity=0.130  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATH-----GTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA  125 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~-----~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~l  125 (503)
                      +..-...+..++..+......+...+     ..|+.-+...+.....+...+..+..++...+.+|....++.+...+..
T Consensus        63 ~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~  142 (251)
T cd07653          63 SVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEA  142 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHH-----HHHHHHHHHHHHHhh-HHHHH
Q 010712          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD----VQQIPALLS-----ELESLRQEYHHCRGT-YEYEK  195 (503)
Q Consensus       126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e----lqqi~~l~~-----EIe~L~qELq~lR~e-le~ek  195 (503)
                      +.++..++....+......+++.+..+++....++.+.+.+    +........     .+..+-..++.+..+ +..++
T Consensus       143 ~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k  222 (251)
T cd07653         143 EKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTV  222 (251)
T ss_pred             HHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          196 KFYNDHLESLQVMEKNYITMATEVEK  221 (503)
Q Consensus       196 k~~~el~eqlqemEk~L~sm~rEIek  221 (503)
                      ..+.........+-..+......|.+
T Consensus       223 ~~l~~~~~~~~~~~~~~~~~~~~i~~  248 (251)
T cd07653         223 ELLLQAAEIERKVIPIIAKCLDGIKK  248 (251)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhHhh

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=95.74  E-value=0.13  Score=40.79  Aligned_cols=60  Identities=18%  Similarity=0.343  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 010712          113 EKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA  172 (503)
Q Consensus       113 eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~  172 (503)
                      +....|++|++..+.+..||..++.....+...+++.+.+...|..+|..++.+++++..
T Consensus         1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen    1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=95.72  E-value=0.2  Score=48.37  Aligned_cols=105  Identities=17%  Similarity=0.271  Sum_probs=0.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-H
Q 010712           99 GMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE-L  177 (503)
Q Consensus        99 ~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E-I  177 (503)
                      +....++.++..|.+++..++.   .+..++.+|+.++..-... .+|..+..++++|..++..++.+++......-+ |
T Consensus        62 ~~~~~~~~~~~~l~~~~~~~~~---~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i  137 (188)
T PF03962_consen   62 QAKQKRQNKLEKLQKEIEELEK---KIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKI  137 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010712          178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQV  207 (503)
Q Consensus       178 e~L~qELq~lR~ele~ekk~~~el~eqlqe  207 (503)
                      +.++.++..++..+..-...+..+..-+..
T Consensus       138 ~~~~~~~~~~~~~anrwTDNI~~l~~~~~~  167 (188)
T PF03962_consen  138 EKLKEEIKIAKEAANRWTDNIFSLKSYLKK  167 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PRK15048 methyl-accepting chemotaxis protein II; Provisional

Probab=95.71  E-value=4.3  Score=44.95  Aligned_cols=181  Identities=7%  Similarity=0.072  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH----hHH
Q 010712           53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA----EPV  128 (503)
Q Consensus        53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~l----e~L  128 (503)
                      ++|..+...+..+...++.+..++...-.++.....++...-.++.....+....+.++...+..+...+.++    +.+
T Consensus       245 DEig~l~~s~n~m~~~l~~~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~  324 (553)
T PRK15048        245 SEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQA  324 (553)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHhh---------HHHHHHH
Q 010712          129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE--LESLRQEYHHCRGT---------YEYEKKF  197 (503)
Q Consensus       129 k~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E--Ie~L~qELq~lR~e---------le~ekk~  197 (503)
                      ....+......++......++...+++|....+++..-+.-|..+-.+  |=.|..-|+.+|.-         -++.+++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~i~~~I~~Ia~QTNLLALNAaIEAARAGE~GrGFAVVA~EVr~L  404 (553)
T PRK15048        325 SQLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNL  404 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCChhHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      .++..+..+++..-+..+...+++....+++....+
T Consensus       405 A~~t~~st~~I~~~i~~~~~~~~~~~~~~~~~~~~~  440 (553)
T PRK15048        405 ASRSAQAAKEIKALIEDSVSRVDTGSVLVESAGETM  440 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	503
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-10
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-09
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
3kbt_A	326	Beta-I spectrin, spectrin beta chain, erythrocyte;	1e-07
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	1e-07
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	2e-06
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	2e-06
2xs1_A	704	Programmed cell death 6-interacting protein; prote	2e-07
3l4q_C	170	Phosphatidylinositol 3-kinase regulatory subunit b	7e-07
1u4q_A	322	Spectrin alpha chain, brain; alpha spectrin, three	1e-05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	2e-05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	3e-05
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	2e-04
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	2e-04
1u5p_A	216	Spectrin alpha chain, brain; alpha spectrin, two r	3e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 26/187 (13%), Positives = 67/187 (35%), Gaps = 7/187 (3%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSE---RE 105
             +++K+ +   E+ K +   +          ++   A+ ++  L+ +I   + E    +
Sbjct: 44  VSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQ 103

Query: 106 LQMRNLTEKIAKMEAELKTAEPV--KLEFQKSKTEAQ--NLVVAREELIAKVHQLTQDLQ 161
            ++    +K+ + E     +E     +E +  K E +     +  +E         +  +
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE 163

Query: 162 RAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 221
                +  I + L   E   +         E E K   ++L+SL+   + Y     + E+
Sbjct: 164 EVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEE 223

Query: 222 LRAELMN 228
               L +
Sbjct: 224 EIKVLSD 230

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 57.0 bits (137), Expect = 4e-09
 Identities = 22/187 (11%), Positives = 68/187 (36%), Gaps = 10/187 (5%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE--- 105
           +  ++++A+   ++++              +       + +++I   Q+   K   E   
Sbjct: 100 DRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDAD 159

Query: 106 LQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAR----EELIAKVHQLTQDLQ 161
            +   +  K+  +E++L+ AE      +    E +  +       + L A+  + +Q   
Sbjct: 160 RKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKED 219

Query: 162 RAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 221
           +   +++ +   L E E+  +         E       D L +    +  Y  ++ E++ 
Sbjct: 220 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ---KLKYKAISEELDH 276

Query: 222 LRAELMN 228
              ++ +
Sbjct: 277 ALNDMTS 283

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 52.7 bits (126), Expect = 9e-08
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 20/190 (10%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSER---- 104
           +  E    +     ++L  E         +L+++L A + EL      +   + +     
Sbjct: 23  DEAEADKKAAEDRSKQLEDELV-------SLQKKLKATEDELDKYSEALKDAQEKLELAE 75

Query: 105 ------ELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQ 158
                 E  + +L  +I   E EL  A+       +   EA+    A +E    +  +  
Sbjct: 76  KKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEK---AADESERGMKVIES 132

Query: 159 DLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATE 218
             Q+    ++     L E + + ++          +       LE  +   +       E
Sbjct: 133 RAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAE 192

Query: 219 VEKLRAELMN 228
           +E+    + N
Sbjct: 193 LEEEIKTVTN 202

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 26/181 (14%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEA 120
           +MQ L  + +           +  AA+   +           + E ++ +L +K+   E 
Sbjct: 7   KMQMLKLDKENALDRADEAEADKKAAEDRSK-----------QLEDELVSLQKKLKATED 55

Query: 121 ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESL 180
           EL          + ++ + +       +  A V  L + +Q    ++ +    L+     
Sbjct: 56  ELDKYS---EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQK 112

Query: 181 RQEYHHCRGTYEYEKKFYNDHLES-LQVMEKNYITMATEVEKLRAELMNAPNVDRRADGS 239
            +E          EK    D  E  ++V+E        ++E    +L  A ++   AD  
Sbjct: 113 LEEA---------EKA--ADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRK 161

Query: 240 Y 240
           Y
Sbjct: 162 Y 162

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 11/183 (6%)

Query: 51   MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
            ME  I     +  KL  E + L      L   LA  + + +     +  +K++ E  +  
Sbjct: 988  MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK----NLTKLKNKHESMISE 1043

Query: 111  LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170
            L  ++ K E   +  E +K   +K + E+ +L     EL A++ +L   L +   ++Q  
Sbjct: 1044 LEVRLKKEEKSRQELEKIK---RKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100

Query: 171  PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV----MEKNYITMATEVEKLRAEL 226
             A L +  S +          E       + LES +      EK    ++ E+E L+ EL
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160

Query: 227  MNA 229
             + 
Sbjct: 1161 EDT 1163

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 36/193 (18%), Positives = 73/193 (37%), Gaps = 15/193 (7%)

Query: 49   EVMEQKIASQHVEMQKLATENQR----LAATHGTLRQELAAAQHELQILHGQIGGMKSER 104
            E M  ++A++  E++++  E +            L+ E    Q ++  L  Q+   ++ R
Sbjct: 912  EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971

Query: 105  ---ELQMRNLTEKIAKMEAELKTAEPVKLEFQKSK----TEAQNLVVAREELIAKVHQLT 157
               +L+      KI KME ++   E    +  K +        +L     E   K   LT
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

Query: 158  QDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV----MEKNYI 213
            +   +  + + ++   L + E  RQE    +   E E    ++ +  LQ     ++    
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 214  TMATEVEKLRAEL 226
                E++   A L
Sbjct: 1092 KKEEELQAALARL 1104

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 30/189 (15%), Positives = 71/189 (37%), Gaps = 16/189 (8%)

Query: 51   MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQH----------ELQILHGQIGGM 100
            +E+++  +    QKL  E          +  ++   +            L+     +   
Sbjct: 960  LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 101  KSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160
             +E E + +NLT+   K E+ +   E    + +KS+ E +     + +L  +   L + +
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK---IKRKLEGESSDLHEQI 1076

Query: 161  QRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 220
                  + +   L ++L    +E        E E    N+ L+ ++ +E +   +  ++E
Sbjct: 1077 AELQAQIAE---LKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLE 1133

Query: 221  KLRAELMNA 229
              +A    A
Sbjct: 1134 SEKAARNKA 1142

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 38/215 (17%), Positives = 85/215 (39%), Gaps = 18/215 (8%)

Query: 53   QKIASQHVEMQKLATE-NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSER---ELQM 108
            Q+      E+   A E   RLAA    L + L   +  ++    +   +++E+   + QM
Sbjct: 898  QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 957

Query: 109  RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAK-----------VHQLT 157
             +L E++ + EA  +  +  K+       + ++ ++  E+   K           V  LT
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 158  QDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMAT 217
             +L       + +  L ++ ES+  E        + E+K   +  +  + +E     +  
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISEL---EVRLKKEEKSRQELEKIKRKLEGESSDLHE 1074

Query: 218  EVEKLRAELMNAPNVDRRADGSYGGATGNSENETS 252
            ++ +L+A++        + +     A    E+ETS
Sbjct: 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 49   EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSEREL-- 106
              +   +A +  + + L     +  +    L   L   +   Q L      ++ E     
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLH 1073

Query: 107  --------QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQ 158
                    Q+  L  ++AK E EL+ A       +   ++  N +    EL + +  L +
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEEELQAA---LARLEDETSQKNNALKKIRELESHISDLQE 1130

Query: 159  DL---QRAHTDVQ-QIPALLSELESLRQE 183
            DL   + A    + Q   L  ELE+L+ E
Sbjct: 1131 DLESEKAARNKAEKQKRDLSEELEALKTE 1159

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 33/175 (18%), Positives = 72/175 (41%), Gaps = 27/175 (15%)

Query: 51   MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
            +++KI  Q+ E + L  +   L  T+ T  ++L +    L++   +          ++ +
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE----AKNATNRVLS 988

Query: 111  LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170
            L E+IAK+  EL           +++TE + +    ++   +  QL  +L+  +T ++  
Sbjct: 989  LQEEIAKLRKEL----------HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT- 1037

Query: 171  PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225
                 E E L +           + K   + +E   V E   + +    E+LR +
Sbjct: 1038 -----EKEELNRR-------IHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 30/186 (16%), Positives = 68/186 (36%), Gaps = 14/186 (7%)

Query: 51   MEQKIASQHVEMQKL-ATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMR 109
              + +A + ++  K+ A   +R    H  L  ++   Q ++     +          +M 
Sbjct: 897  YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKID----EQNKEYKSLLEKMN 952

Query: 110  NLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ- 168
            NL    +    +L++        + S+ EA+N       L  ++ +L ++L +  T+ + 
Sbjct: 953  NLEITYSTETEKLRSDV---ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 169  ---QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL--QVMEKNYITMATEVEKLR 223
                      E E L  E        + EK+  N  +     ++ E     +  E ++L 
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE 1069

Query: 224  AELMNA 229
             +L + 
Sbjct: 1070 LDLNDE 1075

>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Length = 326

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 24/206 (11%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE--- 105
              ++ +      +++LA+  Q L +      +++   Q ++   +  +  +  ER+   
Sbjct: 47  LRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKL 106

Query: 106 ---LQMRNLTEKIAKMEAELKTAEP-------------VKLEFQKSKTEAQNLVVAREEL 149
                +  L  +   +E  +   E              V L   K +  A+      +E 
Sbjct: 107 ENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQER 166

Query: 150 IAKVHQLTQDL-QRAHTDVQQIPALLSELESLRQEY--------HHCRGTYEYEKKFYND 200
           +  V+   + L    H++   I      L  +  +              +Y+   +++  
Sbjct: 167 VDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLH-RYFYT 225

Query: 201 HLESLQVMEKNYITMATEVEKLRAEL 226
             E L ++++ +  +  +V    +  
Sbjct: 226 GAEILGLIDEKHRELPEDVGLDASTA 251

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 26/176 (14%), Positives = 65/176 (36%), Gaps = 19/176 (10%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM-------RNLTE 113
           +   L  E           +Q    A+ EL         +++E E Q+       R+L  
Sbjct: 4   DFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA 63

Query: 114 KIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL 173
              +++ E+   E +K + +    ++   V   E+ +++   + + L +   +++Q    
Sbjct: 64  DNQRLKYEV---EALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ---- 116

Query: 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVME---KNYITMATEVEKLRAEL 226
               + L +       + E  ++  N  +E    +E       ++   V++L+ E 
Sbjct: 117 --ANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEA 170

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 3/140 (2%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
              EQ+      + Q+L  E + L         +       L+    Q   +K +    +
Sbjct: 52  VQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV 111

Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168
           R L +    +E   +       +F++   +A       E  + +   L   +QR   + +
Sbjct: 112 RELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEAR 171

Query: 169 QIPALLSELESLRQEYHHCR 188
               L  EL    ++    R
Sbjct: 172 D---LRQELAVRERQQEVTR 188

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
           +E ++       + L  +NQRL      L+++L     +       +    S+       
Sbjct: 47  LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ 106

Query: 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170
           L + + ++E      E  K     S  + +       + I +   L  +L    + +  +
Sbjct: 107 LHKYVRELEQANDDLERAKRATIMSLEDFEQ---RLNQAIERNAFLESELDEKESLLVSV 163

Query: 171 PALLSELESLRQEYHHCRGTYEYEKK 196
             L  E   LRQE        E  +K
Sbjct: 164 QRLKDEARDLRQELAVRERQQEVTRK 189

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 53.0 bits (126), Expect = 2e-07
 Identities = 26/192 (13%), Positives = 64/192 (33%), Gaps = 21/192 (10%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAA----THGTLRQELAAAQHELQILHGQIGGMKSER 104
             +++   S    +  L      L A     +     + +   + L+ L   +  +K ER
Sbjct: 513 GQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKER 572

Query: 105 ELQMRNLTEKIAKMEAELKTAEP----------VKLEFQKSKTEAQNLVVAREELIAKVH 154
           E    +L      M ++  TA               E  +        V   +E + K  
Sbjct: 573 EGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKV---QESLKKQE 629

Query: 155 QLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT 214
            L +++Q +H +  ++    +E     +   +    Y+     + + + +L+   K Y  
Sbjct: 630 GLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDN----FVELVANLKEGTKFYNE 685

Query: 215 MATEVEKLRAEL 226
           +   + + + + 
Sbjct: 686 LTEILVRFQNKC 697

>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B Length = 170

 Score = 48.2 bits (114), Expect = 7e-07
 Identities = 22/144 (15%), Positives = 57/144 (39%), Gaps = 9/144 (6%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQM 108
           E +  ++   H + Q  + E  +L   +    QEL   +  ++  +  I   + + + Q 
Sbjct: 13  EAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQE 72

Query: 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV- 167
           ++  E + +   E    E  ++     + +++       E+     +L Q+L+   +D  
Sbjct: 73  KSSKEYLERFRREGNEKEMQRILLNSERLKSR-----IAEIHESRTKLEQELRAQASDNR 127

Query: 168 ---QQIPALLSELESLRQEYHHCR 188
              +++ +L  +L  LR+      
Sbjct: 128 EIDKRMNSLKPDLMQLRKIRDQYL 151

>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Length = 322

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 21/154 (13%), Positives = 54/154 (35%), Gaps = 19/154 (12%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE--- 105
           +++E  I++    ++ L ++   L  +      ++   +  +     +I  M + R    
Sbjct: 46  QLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKL 105

Query: 106 ---LQMRNLTEKIAKMEAELKTAEPV--KLEFQKSKTEAQNL----------VVAREELI 150
               ++      +   E+ +K  + +    ++ +  T  QNL          + A E  I
Sbjct: 106 NESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAI 165

Query: 151 AKVHQLTQDL-QRAHTDVQQIPALLSELESLRQE 183
             V    + L        ++I   L++     +E
Sbjct: 166 QGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKE 199

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 14/162 (8%)

Query: 49  EVMEQKIAS---QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE 105
           E     + +     V ++K  TE  +          +L +   ELQ  +  +   KS+ +
Sbjct: 16  EEANDLLRTESDTAVRLRKSHTEMSKSI-------SQLESLNRELQERNRILENSKSQTD 68

Query: 106 LQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165
                L   +     +      +  + Q   T  Q  V   +  + KV    ++ Q    
Sbjct: 69  KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128

Query: 166 DVQQIPALLSELE-SLRQEYHHCRGTYEYEKKFYNDHLESLQ 206
             ++     + LE  L  +    +   E E   +      L 
Sbjct: 129 HSEK---EKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKARLT 167

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 18/134 (13%), Positives = 49/134 (36%), Gaps = 5/134 (3%)

Query: 51  MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRN 110
           M + I+      ++L   N+ L  +     ++    Q  L+         +      + +
Sbjct: 39  MSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRD----RGHDSEMIGD 94

Query: 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKV-HQLTQDLQRAHTDVQQ 169
           L  +I  ++ E+K  +    + +  + EAQ+++   E+    +   L   L+     ++Q
Sbjct: 95  LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQ 154

Query: 170 IPALLSELESLRQE 183
                   ++   +
Sbjct: 155 EVNEHKVTKARLTD 168

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 24/147 (16%)

Query: 61  EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSER----------ELQMRN 110
           ++++L ++N  L      L++ L  A+   ++  G+   ++ E           E Q   
Sbjct: 8   KVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEK 67

Query: 111 LTEKIAKMEAE-------LKTAEPVKLEFQKSKTEAQNLVVAREELIA----KVHQLTQD 159
            ++K  K E E       LK AE      ++S T+ +  +   E+ +     K   ++++
Sbjct: 68  YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE 127

Query: 160 LQRAHTDVQQIPALLSELESLRQEYHH 186
           +++    V++   LLS+   L  E   
Sbjct: 128 MKQLEDKVEE---LLSKNYHLENEVAR 151

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 114 KIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL 173
           K A+ E E+ + +    EF + K   +     R+EL  K+  L Q+       VQ     
Sbjct: 7   KSAEREKEMASMK---EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN 63

Query: 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226
           L++ E    +    +   E + K  N  LE     E+    +  +  KL  E 
Sbjct: 64  LADAEERCDQLIKNKIQLEAKVKEMNKRLED---EEEMNAELTAKKRKLEDEC 113

>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Length = 216

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 21/154 (13%), Positives = 54/154 (35%), Gaps = 19/154 (12%)

Query: 49  EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE--- 105
           +++E  I++    ++ L ++   L  +      ++   +  +     +I  M + R    
Sbjct: 46  QLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKL 105

Query: 106 ---LQMRNLTEKIAKMEAELKTAEPV--KLEFQKSKTEAQNL----------VVAREELI 150
               ++      +   E+ +K  + +    ++ +  T  QNL          + A E  I
Sbjct: 106 NESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAI 165

Query: 151 AKVHQLTQDL-QRAHTDVQQIPALLSELESLRQE 183
             V    + L        ++I   L++     +E
Sbjct: 166 QGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKE 199

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 101 KSERELQMRNLTEKIAKMEAELK-TAEPVKLEF------QKSKTEAQNLVVAREELIAKV 153
           + E+  +++ L      ME E +  A+    E+      Q  K +  N  +A +      
Sbjct: 91  REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR-IADKAFYQ-- 147

Query: 154 HQLTQDL 160
            Q   D+
Sbjct: 148 -QPDADI 153

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 21/94 (22%)

Query: 47  PPEVMEQKIASQHVE-MQKLATENQ-RLAATHGTLRQELAAAQHELQILHGQIGGMKSER 104
              + ++       E ++K   E + RL           +    +           K + 
Sbjct: 77  ADRLTQEP------ESIRKWREEQRKRLQE-----LDAASKVMEQEWREKA-----KKDL 120

Query: 105 ELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE 138
           E   +  +E++ K +   + A+  K  F +    
Sbjct: 121 EEWNQRQSEQVEKNKINNRIAD--K-AFYQQPDA 151

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 41/277 (14%), Positives = 69/277 (24%), Gaps = 102/277 (36%)

Query: 90  LQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-------------------TAEPVK- 129
           LQ L  QI    + R     N+  +I  ++AEL+                    A+    
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 130 LEFQKSKTEAQNLVVAR------------------------------EELIAK-VHQLTQ 158
                 K     L+  R                              + L+ K +    Q
Sbjct: 262 FNLS-CKI----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 159 DLQR-AHT----DVQQIPALLSELESLRQEYHHCRGTYEYEK------KFYN-------- 199
           DL R   T     +  I   + +  +    + H       +K         N        
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKH----VNCDKLTTIIESSLNVLEPAEYR 372

Query: 200 DHLESLQVMEKN-YITMAT-----------EVEKLRAELMNAPNVDRRADGS-------Y 240
              + L V   + +I               +V  +  +L     V+++   S       Y
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 241 GGATGNSENETS--GRPVGQNAYEDGYGVPQGHGPPP 275
                  ENE +     V  + Y            PP
Sbjct: 433 LELKVKLENEYALHRSIV--DHYNIPKTFDSDDLIPP 467

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	503
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.89
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.89
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.87
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.75
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	98.64
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.63
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.52
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.42
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.41
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	98.33
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	98.3
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.2
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	98.05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	98.04
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	97.9
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.82
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.79
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	97.78
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	97.76
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	97.75
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	97.73
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	97.69
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	97.61
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	97.56
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	97.53
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	97.53
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	97.52
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	97.47
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	97.4
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	97.38
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	97.38
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	97.37
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	97.36
1cun_A	213	Protein (alpha spectrin); two repeats of spectrin,	97.32
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	97.28
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	97.27
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	97.25
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	97.24
3g67_A	213	Methyl-accepting chemotaxis protein; four-helix bu	97.24
1u5p_A	216	Spectrin alpha chain, brain; alpha spectrin, two r	97.22
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	97.22
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	97.16
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	97.11
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	97.1
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	97.05
1u4q_A	322	Spectrin alpha chain, brain; alpha spectrin, three	97.02
3edv_A	323	Spectrin beta chain, brain 1; spectrin repeat, coi	97.0
3edu_A	218	Beta-I spectrin, spectrin beta chain, erythrocyte;	96.99
1u4q_A	322	Spectrin alpha chain, brain; alpha spectrin, three	96.95
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	96.92
1s35_A	214	Beta-I spectrin, spectrin beta chain, erythrocyte;	96.92
2nrj_A	346	HBL B protein; enterotoxin, hemolysis, transmembra	96.85
3g67_A	213	Methyl-accepting chemotaxis protein; four-helix bu	96.85
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	96.84
3fb2_A	218	Spectrin alpha chain, brain spectrin; non-erythroi	96.84
3pdy_A	210	Plectin; cytoskeleton, plakin, intermediate filame	96.84
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	96.83
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	96.82
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	96.8
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	96.76
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	96.76
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	96.75
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	96.73
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	96.72
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	96.71
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	96.68
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	96.68
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	96.68
2nrj_A	346	HBL B protein; enterotoxin, hemolysis, transmembra	96.67
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	96.67
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	96.66
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	96.62
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	96.59
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	96.58
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	96.55
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	96.51
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	96.51
2b5u_A	551	Colicin E3; high resolution colicin E3, ribosome i	96.5
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	96.5
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	96.48
3kbt_A	326	Beta-I spectrin, spectrin beta chain, erythrocyte;	96.48
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	96.46
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	96.46
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	96.44
3plt_A	234	Sphingolipid long chain base-responsive protein L;	96.42
1quu_A	250	Human skeletal muscle alpha-actinin 2; triple-heli	96.41
3edv_A	323	Spectrin beta chain, brain 1; spectrin repeat, coi	96.4
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	96.4
3kbt_A	326	Beta-I spectrin, spectrin beta chain, erythrocyte;	96.39
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	96.34
2xzr_A	114	Immunoglobulin-binding protein EIBD; cell adhesion	96.31
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	96.28
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	96.26
3plt_A	234	Sphingolipid long chain base-responsive protein L;	96.26
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	96.23
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	96.2
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	96.2
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	96.18
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	96.15
2oto_A	155	M protein; helical coiled coil, fibrinogen-binding	96.12
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	96.11
1m1j_A	491	Fibrinogen alpha subunit; coiled coils, disulfide	96.07
4fla_A	152	Regulation of nuclear PRE-mRNA domain-containing 1	96.07
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	96.06
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	96.03
2iak_A	224	Bullous pemphigoid antigen 1, isoform 5; triple he	96.03
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	95.99
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	95.96
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	95.94
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	95.93
1d7m_A	101	Cortexillin I; coiled-coil, coiled-coil trigger si	95.9
1m1j_A	491	Fibrinogen alpha subunit; coiled coils, disulfide	95.89
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	95.87
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	95.86
2v0o_A	276	FCHO2, FCH domain only protein 2; lipid-binding pr	95.85
1y1u_A	585	Signal transducer and activator of transcription;	95.84
3zx6_A	341	HAMP, methyl-accepting chemotaxis protein I; signa	95.84
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	95.84
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.81
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	95.8
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	95.79
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	95.77
2v0o_A	276	FCHO2, FCH domain only protein 2; lipid-binding pr	95.76
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	95.75
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	95.71
2b5u_A	551	Colicin E3; high resolution colicin E3, ribosome i	95.69
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.6
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	95.59
1cun_A	213	Protein (alpha spectrin); two repeats of spectrin,	95.57
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	95.54
3tul_A	158	Cell invasion protein SIPB; translocator, type thr	95.5
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	95.5
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	95.49
3fb2_A	218	Spectrin alpha chain, brain spectrin; non-erythroi	95.49
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	95.49
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	95.48
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	95.47
1s35_A	214	Beta-I spectrin, spectrin beta chain, erythrocyte;	95.47
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	95.46
2xnx_M	146	M protein, M1-BC1; cell adhesion, virulence factor	95.46
4a3a_A	243	Amphiphysin; structural genomics, invagination, kn	95.46
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	95.38
2l7b_A	307	Apolipoprotein E, APO-E; lipid transport, atherosc	95.33
4avm_A	237	Bridging integrator 2; protein binding, plasma mem	95.3
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	95.29
2d1l_A	253	Metastasis suppressor protein 1; IRSP53, actin bin	95.28
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	95.27
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	95.15
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	95.05
2pms_C	125	Pneumococcal surface protein A (PSPA); lactoferrin	95.05
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	95.02
3l4q_C	170	Phosphatidylinositol 3-kinase regulatory subunit b	95.0
3l4q_C	170	Phosphatidylinositol 3-kinase regulatory subunit b	94.98
1bf5_A	575	Signal transducer and activator of transcription 1	94.91
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	94.89
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	94.88
3ajw_A	150	Flagellar FLIJ protein; flagellum, type III secret	94.88
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	94.87
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	94.87
3cl3_D	130	NF-kappa-B essential modulator; death effector dom	94.85
3bas_A	89	Myosin heavy chain, striated muscle/general contro	94.83
4hpq_C	413	ATG17, KLTH0D15642P; autophagy, protein transport;	94.82
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	94.82
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	94.79
2p22_C	192	Protein SRN2; endosome, trafficking complex, VPS23	94.79
2avr_X	119	Adhesion A; antiparallel helix-loop-helix, leucine	94.75
2odv_A	235	Plectin 1, HD1; plakin domain, spectrin repeat, cy	94.75
1hci_A	476	Alpha-actinin 2; triple-helix coiled coil, contrac	94.73
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	94.73
3ibp_A	302	Chromosome partition protein MUKB; structural main	94.72
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	94.66
2p22_C	192	Protein SRN2; endosome, trafficking complex, VPS23	94.63
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	94.53
1qu7_A	227	Methyl-accepting chemotaxis protein I; serine, fou	94.5
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	94.49
1quu_A	250	Human skeletal muscle alpha-actinin 2; triple-heli	94.42
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	94.39
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	94.39
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	94.32
4hpq_C	413	ATG17, KLTH0D15642P; autophagy, protein transport;	94.31
2a01_A	243	Apolipoprotein A-I; four-helix bundle, lipid trans	94.31
1bf5_A	575	Signal transducer and activator of transcription 1	94.3
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	94.28
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	94.23
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	94.21
2xs1_A	704	Programmed cell death 6-interacting protein; prote	94.17
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	94.15
3bas_A	89	Myosin heavy chain, striated muscle/general contro	94.09
2avr_X	119	Adhesion A; antiparallel helix-loop-helix, leucine	94.04
4abx_A	175	DNA repair protein RECN; DNA binding protein, ATP	94.02
3ajw_A	150	Flagellar FLIJ protein; flagellum, type III secret	94.01
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	93.95
3ghg_B	461	Fibrinogen beta chain; triple-stranded coiled coil	93.94
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	93.92
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	93.92
3lbx_B	185	Beta-I spectrin, spectrin beta chain, erythrocyte;	93.9
3edu_A	218	Beta-I spectrin, spectrin beta chain, erythrocyte;	93.87
3iyk_A	526	VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu	93.78
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	93.75
3ghg_B	461	Fibrinogen beta chain; triple-stranded coiled coil	93.74
2qih_A	157	Protein USPA1; trimeric, parallel alpha-helical co	93.66
2pms_C	125	Pneumococcal surface protein A (PSPA); lactoferrin	93.66
3pdy_A	210	Plectin; cytoskeleton, plakin, intermediate filame	93.64
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	93.56
2lem_A	216	Apolipoprotein A-I; lipid transport; NMR {Mus musc	93.48
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	93.4
2l7b_A	307	Apolipoprotein E, APO-E; lipid transport, atherosc	93.39
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	93.29
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	93.24
1xaw_A	140	Occludin; coiled-coil, cell adhesion; 1.45A {Homo	93.24
3tul_A	158	Cell invasion protein SIPB; translocator, type thr	93.12
1yvl_A	683	Signal transducer and activator of transcription 1	93.04
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	93.02
3qwe_A	279	GMIP, GEM-interacting protein; structural genomics	93.0
3uul_A	118	Utrophin; spectrin repeat, structural protein, cyt	93.0
3dyt_A	366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	92.99
3fx0_A	96	NF-kappa-B essential modulator; coiled-coil, coile	92.97
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	92.96
2xs1_A	704	Programmed cell death 6-interacting protein; prote	92.94
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	92.88
3fhn_A	706	Protein transport protein TIP20; TIP20P, vesicle t	92.75
3uun_A	119	Dystrophin; triple helical, cell structure and sta	92.69
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	92.68
3mov_A	95	Lamin-B1; LMNB1, B-type lamins, intermediate filam	92.63
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	92.6
1u5p_A	216	Spectrin alpha chain, brain; alpha spectrin, two r	92.56
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	92.53
2p22_A	174	Suppressor protein STP22 of temperature- sensitive	92.47
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	92.42
3iyk_A	526	VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongu	92.4
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	92.37
2bsg_A	487	Fibritin; viral protein, attachment protein, bacte	92.29
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	92.27
3uul_A	118	Utrophin; spectrin repeat, structural protein, cyt	92.23
3r2p_A	185	Apolipoprotein A-I; amphipathic alpha-helix, major	92.2
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	92.12
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	91.99
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	91.94
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	91.79
1gqe_A	365	Release factor 2, RF2; protein synthesis, ribosome	91.66
2ke4_A	98	CDC42-interacting protein 4; CIP4, TC10, coiled-co	91.63
1hs7_A	97	Syntaxin VAM3; UP-and-DOWN three-helix bundle inse	91.55
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	91.48
4akv_A	386	Sorting nexin-33; transport protein, organelle bio	91.48
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	91.48
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	91.45
2ap3_A	199	Conserved hypothetical protein; structural genomic	91.44
1y1u_A	585	Signal transducer and activator of transcription;	91.44
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	91.4
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	91.34
3lbx_A	161	Spectrin alpha chain, erythrocyte; tetramer, compl	91.31
3zbh_A	99	ESXA; unknown function, type 7 secretion, ESAT6 fa	91.31
4e61_A	106	Protein BIM1; EB1-like motif, coiled-coil, spindle	91.19
3lay_A	175	Zinc resistance-associated protein; salmonella typ	91.15
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	91.05
4f61_I	240	Stathmin-like domain R4; alpha-tubulin, beta-tubul	91.04
2bsg_A	487	Fibritin; viral protein, attachment protein, bacte	90.94
1gqe_A	365	Release factor 2, RF2; protein synthesis, ribosome	90.89
1hci_A	476	Alpha-actinin 2; triple-helix coiled coil, contrac	90.87
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	90.83
4dvy_P	876	Cytotoxicity-associated immunodominant antigen; on	90.82
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	90.81
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	90.74
3gwk_C	98	SAG1039, putative uncharacterized protein SAG1039;	90.72
3m3w_A	320	Pacsin3, protein kinase C and casein kinase II sub	90.62
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	90.53
4avm_A	237	Bridging integrator 2; protein binding, plasma mem	90.48
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	90.48
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	90.46
3f31_A	149	Spectrin alpha chain, brain; LONE helix followed b	90.42
1lq7_A	67	Alpha3W; three helix bundle, de novo protein; NMR	90.34
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	90.24
3ni0_A	99	Bone marrow stromal antigen 2; coiled-coil, antivi	90.24
2yfa_A	258	MCPS, methyl-accepting chemotaxis transducer; rece	90.14
1ez3_A	127	Syntaxin-1A; three helix bundle, endocytosis/exocy	90.07
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	89.91
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	89.91
3htk_A	60	Structural maintenance of chromosomes protein 5; S	89.79
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	89.78
1t3j_A	96	Mitofusin 1; coiled coil antiparallel, dimer, memb	89.68
2qyw_A	102	Vesicle transport through interaction with T-SNAR	89.62
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	89.56
2js5_A	71	Uncharacterized protein; homodimer, protein struct	89.54
1t3j_A	96	Mitofusin 1; coiled coil antiparallel, dimer, memb	89.53
3csx_A	81	Putative uncharacterized protein; metalloprotein,	89.5
2q6q_A	74	Spindle POLE BODY component SPC42; SPC42P, budding	89.15
2k48_A	107	Nucleoprotein; viral protein; NMR {Andes virus}	89.15
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	89.03
3m3w_A	320	Pacsin3, protein kinase C and casein kinase II sub	88.99
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	88.95
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	88.81
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	88.77
2xv5_A	74	Lamin-A/C; structural protein, intermediate filame	88.76
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	88.75
1d7m_A	101	Cortexillin I; coiled-coil, coiled-coil trigger si	88.69
3he5_B	52	Synzip2; heterodimeric coiled-coil, de novo protei	88.38
3rrk_A	357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	88.35
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	88.35
4g2k_A	125	General control protein GCN4, envelope glycoprote	88.25
3he5_B	52	Synzip2; heterodimeric coiled-coil, de novo protei	88.13
4dvy_P	876	Cytotoxicity-associated immunodominant antigen; on	88.12
3ni0_A	99	Bone marrow stromal antigen 2; coiled-coil, antivi	88.1
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	88.1
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	87.94
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	87.9
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	87.86
2dq3_A	425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	87.41
3rrk_A	357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	87.26
3g9g_A	287	Suppressor of yeast profilin deletion; SYP1, BAR d	87.25
2c5k_T	95	Syntaxin TLG1, T-snare affecting A late golgi comp	87.25
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	87.23
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	87.21
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	87.11
3ilw_A	470	DNA gyrase subunit A; DNA topology, topoisomerase,	86.85
2iub_A	363	CORA, divalent cation transport-related protein; m	86.8
1vcs_A	102	Vesicle transport through interaction with T- snar	86.67
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	86.65
2odv_A	235	Plectin 1, HD1; plakin domain, spectrin repeat, cy	86.57
2pih_A	151	Protein YMCA; regulate community development, stru	86.52
3u06_A	412	Protein claret segregational; motor domain, stalk	86.5
2a3d_A	73	Protein (de novo three-helix bundle); NMR {Synthet	86.48
2d4y_A	463	HAP1, flagellar HOOK-associated protein 1; multi-d	86.47
3zbh_A	99	ESXA; unknown function, type 7 secretion, ESAT6 fa	86.38
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	86.36
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	86.17
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	86.1
2qyw_A	102	Vesicle transport through interaction with T-SNAR	86.06
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	86.03
3opc_A	154	Uncharacterized protein; structural genomics, PSI-	85.96
3rmi_A	114	Chorismate mutase protein; emerald biostructures,	85.87
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	85.58
2etd_A	171	LEMA protein; bromodomain-like fold, structural ge	85.56
4dvz_A	569	Cytotoxicity-associated immunodominant antigen; on	85.53
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	85.42
2xcs_B	692	DNA gyrase subunit B, DNA gyrase subunit A; isomer	85.42
2wps_A	107	Trimeric autotransporter adhesin fragment; membran	85.42
2cly_A	214	ATP synthase B chain, mitochondrial; mitochondrion	85.41
2p01_A	323	Alpha-2-macroglobulin receptor-associated protein;	85.39
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	85.33
4dci_A	150	Uncharacterized protein; PSI-biology, midwest cent	85.24
3thf_A	190	Protein shroom; coiled-coil, anti-parallel, helica	85.22
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	85.21
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	85.09
2ke4_A	98	CDC42-interacting protein 4; CIP4, TC10, coiled-co	85.03
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	85.0
3aon_A	217	V-type sodium ATPase subunit D; V-ATPase, coiled-c	84.53
1xaw_A	140	Occludin; coiled-coil, cell adhesion; 1.45A {Homo	84.33
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	84.31
4fi5_A	113	Nucleoprotein; structural genomics, niaid, nationa	84.21
4ev6_A	339	Magnesium transport protein CORA; membrane protein	84.01
2inr_A	514	DNA topoisomerase 4 subunit A; topoisomerase II fo	83.96
2p01_A	323	Alpha-2-macroglobulin receptor-associated protein;	83.94
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	83.85
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	83.85
4dvz_A	569	Cytotoxicity-associated immunodominant antigen; on	83.73
3vp9_A	92	General transcriptional corepressor TUP1; four hel	83.66
3fav_B	94	ESAT-6, 6 kDa early secretory antigenic target; co	83.59
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	83.58
2dnx_A	130	Syntaxin-12; snare, HABC domain, UP and DOWN three	83.55
2vs0_A	97	Virulence factor ESXA; secreted, four helical bund	83.51
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	83.47
3d5a_X	354	RF1, peptide chain release factor 1; ribosome, rib	83.42
3vem_A	115	Helicase protein MOM1; coiled-coil, hendecad, tran	83.25
3a5c_G	223	V-type ATP synthase subunit D; V-ATPase, asymmetri	83.2
1zvu_A	716	Topoisomerase IV subunit A; beta-pinwheel, ATPase,	83.05
3d5a_X	354	RF1, peptide chain release factor 1; ribosome, rib	83.01
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	82.9
3ra3_B	28	P2F; coiled coil domain, fiber, KIH interactions,	82.85
1yke_B	151	RNA polymerase II holoenzyme component SRB7; gene	82.62
2ykt_A	253	Brain-specific angiogenesis inhibitor 1-associate	82.61
1gs9_A	165	Apolipoprotein E, APOE4; lipid transport, heparin-	82.49
3sjb_C	93	Golgi to ER traffic protein 1; coiled-coil, recept	82.39
2w6b_A	56	RHO guanine nucleotide exchange factor 7; X-RAY cr	82.35
3u0c_A	201	Invasin IPAB, 62 kDa antigen; translocator, type t	82.33
1r8i_A	213	TRAC; VIRB5, helical bundle, structural protein; 3	82.28
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	82.1
3l39_A	227	Putative PHOU-like phosphate regulatory protein; B	81.87
1gk6_A	59	Vimentin; intermediate filament, dimer, parallel c	81.76
4ioe_A	93	Secreted protein ESXB; structural genomics, PSI-bi	81.52
2xkj_E	767	Topoisomerase IV; type IIA topoisomerase; 2.20A {A	81.49
1ykh_B	132	RNA polymerase II holoenzyme component SRB7; gene	81.45
4dci_A	150	Uncharacterized protein; PSI-biology, midwest cent	81.44
3u0c_A	201	Invasin IPAB, 62 kDa antigen; translocator, type t	81.44
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	81.39
4a3a_A	243	Amphiphysin; structural genomics, invagination, kn	81.39
4aj5_1	101	SKA3, spindle and kinetochore-associated protein 3	81.3
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	81.29
3ter_A	136	Mammalian stromal interaction molecule-1; dimer, m	81.27
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	81.0
1kmi_Z	214	CHEZ, chemotaxis protein CHEZ; four-helix bundle,	80.96
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	80.85
1gs9_A	165	Apolipoprotein E, APOE4; lipid transport, heparin-	80.67
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	80.42
1sum_B	235	Phosphate transport system protein PHOU homolog 2;	80.37
3c9i_A	242	Tail needle protein GP26; xenon, coiled-coil, prot	80.3
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	80.29
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	80.26
2lem_A	216	Apolipoprotein A-I; lipid transport; NMR {Mus musc	80.25
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	80.22
2d4y_A	463	HAP1, flagellar HOOK-associated protein 1; multi-d	80.19
4ani_A	213	Protein GRPE; chaperone cycle, complementary assay	80.09
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	80.07

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.07  E-value=9.8e-08  Score=91.05  Aligned_cols=43  Identities=12%  Similarity=0.166  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L   93 (503)
                      |..++..+..++..+..+...|..++..++.++..+..++..+
T Consensus         4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~   46 (284)
T 1c1g_A            4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSL   46 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444433333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.89  E-value=2e-08  Score=117.03  Aligned_cols=154  Identities=10%  Similarity=0.111  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010712           68 ENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVARE  147 (503)
Q Consensus        68 enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erq  147 (503)
                      .+.+|+.++.+|+++|+..+.+...|+..+.+++...+.++.+|++.+++|+....+++.++.++..++.|+.+++.+.+
T Consensus       922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A          922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp             -----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555554444444444444443444444455555544444444433344444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       148 eLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe  227 (503)
                      ++..+...|++++++++.      ++..++..|++|.+.|+++++.++..+.+..+++.  +.....+.++...|+.|++
T Consensus      1002 ~~~ke~~~lee~~~~~~~------~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 1073 (1080)
T 2dfs_A         1002 QTQTEKKTIEEWADKYKH------ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT--ETMEKKLVEETKQLELDLN 1073 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            444444444444433332      33344555555555555555544433333333221  1112223344445555554


Q ss_pred             hc
Q 010712          228 NA  229 (503)
Q Consensus       228 kl  229 (503)
                      +.
T Consensus      1074 ~~ 1075 (1080)
T 2dfs_A         1074 DE 1075 (1080)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.89  E-value=2.7e-09  Score=125.67  Aligned_cols=47  Identities=19%  Similarity=0.290  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      +.++..+..++..+..++.++...+..++.++..++.++..++.++.
T Consensus       856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~  902 (1184)
T 1i84_S          856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ  902 (1184)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555544444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.87  E-value=3e-09  Score=125.21  Aligned_cols=49  Identities=20%  Similarity=0.202  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      ..++++|+.+..++..++.++..+..++..|++++..++.+++.....+
T Consensus       860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l  908 (1184)
T 1i84_S          860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY  908 (1184)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777776666666666666666666665555554444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.75  E-value=2.3e-06  Score=84.49  Aligned_cols=112  Identities=12%  Similarity=0.190  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV  128 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~L  128 (503)
                      +.++.+|..+..++..|-.++..|..++..++.++..++.++..++.++.    ..+.++..+.+++.+.+..+.... -
T Consensus        14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~----~~e~~i~~~~~ri~~~~~~l~~v~-~   88 (256)
T 3na7_A           14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVS----KNEQTLQDTNAKIASIQKKMSEIK-S   88 (256)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCS-S
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHccC-C
Confidence            33444444444444444444444444444444444444444444444332    344455666666666665554211 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (503)
Q Consensus       129 k~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~  165 (503)
                      ..|++.+..|++.+...+..++.++.+++.+++.++.
T Consensus        89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~  125 (256)
T 3na7_A           89 ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE  125 (256)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1334444444444444444444544444444444333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=98.64  E-value=4.1e-06  Score=78.95  Aligned_cols=54  Identities=15%  Similarity=0.118  Sum_probs=17.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccccc
Q 010712          180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI---TMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       180 L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~---sm~rEIekLraELekle~el  233 (503)
                      |......+...++.+..++....++..=|+.+|.   .|..+++.|+.|+..|+.++
T Consensus       121 lEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El  177 (189)
T 2v71_A          121 LERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQEL  177 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444444444443333332   44555556666666655554

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.63  E-value=1.8e-06  Score=85.14  Aligned_cols=127  Identities=15%  Similarity=0.183  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHH-
Q 010712           62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE----PVKLEFQKSK-  136 (503)
Q Consensus        62 Iq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le----~Lk~ELeqLr-  136 (503)
                      +|.+..++.+|...+..|..+|+.++.++..++..+..++    .++.++..++.+++.++..+.    ..+..+..++ 
T Consensus        13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~----~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~   88 (256)
T 3na7_A           13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLE----EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS   88 (256)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            5555555566666666666666666666666655554332    344455555555555444322    2222222221 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010712          137 -TEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEK  195 (503)
Q Consensus       137 -aELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ek  195 (503)
                       .|++.+..++..+..++..|+.+|..+..+   +..+..+++.+..++..++.+++..+
T Consensus        89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~---ie~~~~~l~~~~~~l~~~~~~l~~~~  145 (256)
T 3na7_A           89 ERELRSLNIEEDIAKERSNQANREIENLQNE---IKRKSEKQEDLKKEMLELEKLALELE  145 (256)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             234444444444444444444444433332   22334444444455544444444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.52  E-value=1.3e-06  Score=101.75  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          141 NLVVAREELIAKVHQLTQDLQRAHTD  166 (503)
Q Consensus       141 qL~~erqeLe~qiq~L~~ELqrlk~e  166 (503)
                      ++..++.+|+.++++|+++++++..+
T Consensus       981 ~~~~~v~~L~~e~~~l~~~~~~~~ke 1006 (1080)
T 2dfs_A          981 NATNRVLSLQEEIAKLRKELHQTQTE 1006 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444443333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.42  E-value=2.2e-05  Score=99.37  Aligned_cols=47  Identities=23%  Similarity=0.244  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           51 MEQKIASQHVEMQKLATENQRL---AATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrL---a~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      ++++.+.+...+++|..=+.||   .++++.|+.+|+..+.+|+..+++.
T Consensus      1908 l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea 1957 (3245)
T 3vkg_A         1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQA 1957 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444433333   3344555555555555554444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.41  E-value=1.1e-05  Score=102.09  Aligned_cols=13  Identities=15%  Similarity=0.146  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHHh
Q 010712          216 ATEVEKLRAELMN  228 (503)
Q Consensus       216 ~rEIekLraELek  228 (503)
                      ..|.++....+++
T Consensus      2083 ~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A         2083 NSERGRWEQQSEN 2095 (3245)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhccccHHHHHHH
Confidence            3333333333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=98.33  E-value=8.9e-05  Score=69.86  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=3.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          207 VMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       207 emEk~L~sm~rEIekLraELekle  230 (503)
                      .|...++.+..|+..|+.||.-+.
T Consensus       158 ~l~~~~QRLkdE~rDLk~El~v~~  181 (189)
T 2v71_A          158 SLLVSVQRLKDEARDLRQELAVRE  181 (189)
T ss_dssp             HHHCCC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555667777777777776554

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=98.30  E-value=0.00023  Score=62.64  Aligned_cols=63  Identities=11%  Similarity=0.115  Sum_probs=32.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          167 VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       167 lqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +.++.++.+.+.+.-.-++.|...|--++|.+++.+-..++.-...+++.-|-+.++..|.-.
T Consensus        97 iRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mY  159 (167)
T 4gkw_A           97 MRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHY  159 (167)
T ss_dssp             HHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence            334444444444433444444444444555555544445555555556666666666666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.24  E-value=8.9e-06  Score=88.21  Aligned_cols=42  Identities=10%  Similarity=0.084  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATE  218 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rE  218 (503)
                      ++.+++|+.+++..++..++...++++++..+.+++..+..+
T Consensus       539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~  580 (597)
T 3oja_B          539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK  580 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.20  E-value=1.7e-05  Score=86.08  Aligned_cols=61  Identities=13%  Similarity=0.015  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      ..++..++++++..+++++.++++..+++++++++.+.+..+.+|++++++++.+++.++-
T Consensus       522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~  582 (597)
T 3oja_B          522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN  582 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344455555555556666666667777777777777777888888888888888777664

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=98.05  E-value=0.00054  Score=63.19  Aligned_cols=19  Identities=32%  Similarity=0.281  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010712          102 SERELQMRNLTEKIAKMEA  120 (503)
Q Consensus       102 ae~E~el~eL~eki~kLEa  120 (503)
                      +..+..+++|.+++..|+.
T Consensus        44 ~~~E~~~rELq~~~~~L~~   62 (168)
T 3o0z_A           44 SQLESLNRELQERNRILEN   62 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=98.04  E-value=0.0014  Score=60.46  Aligned_cols=53  Identities=19%  Similarity=0.234  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 010712          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMA----TEVEKLRAELM  227 (503)
Q Consensus       175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~----rEIekLraELe  227 (503)
                      ..|..|+.|+++++..+.........+.+.+..+|++..+++    -+++.|...++
T Consensus        97 ~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e  153 (168)
T 3o0z_A           97 ARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE  153 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444433    33444444433

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=97.90  E-value=0.001  Score=60.73  Aligned_cols=96  Identities=9%  Similarity=0.100  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq  206 (503)
                      .+..|+..|..++..-+..+.+.+.++..+..+|+.|...+         .++...-....|.+....++....+.++++
T Consensus        55 ~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL---------FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~  125 (154)
T 2ocy_A           55 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL---------FDEANNMVADARKEKYAIEILNKRLTEQLR  125 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666677777777777777777777777776655432         111222222334444455566677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          207 VMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       207 emEk~L~sm~rEIekLraELekle~  231 (503)
                      +.+..|..++..+..|+.-+.+++.
T Consensus       126 e~~~~l~~lq~ql~~LK~v~~~m~~  150 (154)
T 2ocy_A          126 EKDTLLDTLTLQLKNLKKVMHSLDN  150 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            7777777777777777776666544

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.82  E-value=0.0089  Score=54.64  Aligned_cols=52  Identities=13%  Similarity=0.162  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      +..|+.+|+++..++...+.++..+...+..+-..|..|....-.|..+|..
T Consensus       100 v~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~  151 (155)
T 2efr_A          100 VTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVAR  151 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            3334444444444444444444444444444444444444444444444433

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.79  E-value=0.0081  Score=54.90  Aligned_cols=51  Identities=14%  Similarity=0.200  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR  223 (503)
Q Consensus       173 l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLr  223 (503)
                      |..+|+.|..+|...+..+..+...++.....+..|...+-.+..||..|+
T Consensus       103 LEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~  153 (155)
T 2efr_A          103 LEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK  153 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            333444444444444444444444444445555555555556666666554

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=97.75  E-value=0.0048  Score=54.40  Aligned_cols=23  Identities=9%  Similarity=-0.060  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHH
Q 010712          179 SLRQEYHHCRGTYEYEKKFYNDH  201 (503)
Q Consensus       179 ~L~qELq~lR~ele~ekk~~~el  201 (503)
                      +|...|.......+.+..++-.+
T Consensus       102 ELEADLKEKDsMVe~LT~TiG~L  124 (167)
T 4gkw_A          102 ELEADLKEKDSMVESLTETIGIL  124 (167)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHhhhhHHHHHHHHHHHHH
Confidence            33333333333333333333333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=97.73  E-value=0.00099  Score=60.76  Aligned_cols=30  Identities=7%  Similarity=0.008  Sum_probs=11.9

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010712          183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNY  212 (503)
Q Consensus       183 ELq~lR~ele~ekk~~~el~eqlqemEk~L  212 (503)
                      ....|+..+......++.+..++.++..-+
T Consensus       116 r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~  145 (154)
T 2ocy_A          116 LNKRLTEQLREKDTLLDTLTLQLKNLKKVM  145 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333444444444444333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=97.61  E-value=0.0058  Score=54.12  Aligned_cols=104  Identities=18%  Similarity=0.166  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE----LESLRQEYHHCRGTYEYEKKFYNDHLE  203 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E----Ie~L~qELq~lR~ele~ekk~~~el~e  203 (503)
                      +..++..++..+.+....+.+|+.+...|..++..+...++.......+    .+.|...-..+...|..+...+.+...
T Consensus        18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee   97 (129)
T 2fxo_A           18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE   97 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444433333322222111    222223333333444444444555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          204 SLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      ...++......|..++..|+.+|+.++.
T Consensus        98 ~~~~L~~~kkkle~e~~~Lk~~led~e~  125 (129)
T 2fxo_A           98 MNAELTAKKRKLEDECSELKRDIDDLEL  125 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555666666666666666666543

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=97.56  E-value=0.0012  Score=58.65  Aligned_cols=114  Identities=14%  Similarity=0.170  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHH
Q 010712          104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ-QIPALLSELESLRQ  182 (503)
Q Consensus       104 ~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq-qi~~l~~EIe~L~q  182 (503)
                      .+.++.+|...+.+...+   +...+.||.+++..++.|..+++.+..+...|+..|..++.... ++..+...|..|..
T Consensus        15 y~~K~eel~~~~~~~~~~---l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~   91 (131)
T 3tnu_A           15 FFTKTEELNREVATNSEL---VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEE   91 (131)
T ss_dssp             -----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555444443332   33355566666666666666666666666666666655444322 23444555666666


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       183 ELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe  227 (503)
                      +|.+++.+++       ....+.+++-+-...|..||..-+.-|+
T Consensus        92 eL~~~r~em~-------~ql~EYq~Ll~vKl~Ld~EIatYRkLLE  129 (131)
T 3tnu_A           92 QLAQLRCEME-------QQNQEYKILLDVKTRLEQEIATYRRLLE  129 (131)
T ss_dssp             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHC
Confidence            6666665544       4444555566666677788877776553

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=97.53  E-value=0.0055  Score=54.26  Aligned_cols=45  Identities=20%  Similarity=0.228  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG   95 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~   95 (503)
                      -+.++.....+|..|...+.+.......|..+...+..++..|..
T Consensus        11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~   55 (129)
T 2fxo_A           11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL   55 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444433333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=97.53  E-value=0.0015  Score=57.92  Aligned_cols=113  Identities=12%  Similarity=0.185  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHH
Q 010712          104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ-QIPALLSELESLRQ  182 (503)
Q Consensus       104 ~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq-qi~~l~~EIe~L~q  182 (503)
                      .+.++.+|...+.+...+   +...+.||.+++..++.|..+++.+..+...|+..|..++.... ++..+...|..|..
T Consensus        13 y~~K~eel~~~~~~~~~~---l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~   89 (129)
T 3tnu_B           13 YQTKYEELQQTAGRHGDD---LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEE   89 (129)
T ss_dssp             ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555444433332   33455666666666777776666666666666666655544322 34445555666666


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       183 ELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL  226 (503)
                      +|.+++.+++       ....+.+++-+-...|..||..-+.-|
T Consensus        90 eL~~~r~e~~-------~ql~EYq~LlnvKl~Ld~EIatYRkLL  126 (129)
T 3tnu_B           90 ALQKAKQDMA-------RLLREYQELMNTKLALDVEIATYRKLL  126 (129)
T ss_dssp             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            6666665544       344445555555667777777766544

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=97.52  E-value=0.00094  Score=70.89  Aligned_cols=17  Identities=24%  Similarity=0.413  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010712          109 RNLTEKIAKMEAELKTA  125 (503)
Q Consensus       109 ~eL~eki~kLEaEL~~l  125 (503)
                      +.|...|.+|++++.++
T Consensus        60 rDltkrINELKnqLEdl   76 (562)
T 3ghg_A           60 QDFTNRINKLKNSLFEY   76 (562)
T ss_dssp             HHHHHHHHHHHHHHTHH
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence            33444444444444443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=97.47  E-value=0.0018  Score=68.85  Aligned_cols=42  Identities=17%  Similarity=0.138  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI  213 (503)
Q Consensus       172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~  213 (503)
                      +|+..|..|+.+|+..-+.|..|+..++++..++|.||..+.
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId  155 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555554445555555555555555555555544

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=97.40  E-value=0.00084  Score=55.59  Aligned_cols=82  Identities=16%  Similarity=0.239  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           77 GTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQL  156 (503)
Q Consensus        77 ~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L  156 (503)
                      ..|+.+|..+..+-.++..++..++.       .+.+-..+++.|+.....++.++..+++++..+...+.+|+.+++.|
T Consensus         3 ~eLr~qi~~l~~e~~~l~~e~dn~~~-------~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL   75 (86)
T 3swk_A            3 RELRRQVDQLTNDKARVEVERDNLAE-------DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESL   75 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            34444454444444444443332221       12223346677888888899999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 010712          157 TQDLQRAHT  165 (503)
Q Consensus       157 ~~ELqrlk~  165 (503)
                      +.+|.-+++
T Consensus        76 ~eEl~fLkk   84 (86)
T 3swk_A           76 QEEIAFLKK   84 (86)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            999987763

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=97.38  E-value=0.0061  Score=51.81  Aligned_cols=40  Identities=5%  Similarity=-0.044  Sum_probs=15.7

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK  221 (503)
Q Consensus       182 qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIek  221 (503)
                      .+++++...+...+..+.+..+...+.|.++.+|.+.|+-
T Consensus        58 ~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql   97 (101)
T 3u1c_A           58 DSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333334444444444444433

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=97.38  E-value=0.0068  Score=51.51  Aligned_cols=57  Identities=16%  Similarity=0.164  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       173 l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +..+|..|+..++.++.+++..+..+.+....+.+.++.....+.++..|.+.|.-+
T Consensus        42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll   98 (101)
T 3u1c_A           42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666666666666666666666666666666666666666666665544

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=97.37  E-value=0.12  Score=49.94  Aligned_cols=15  Identities=20%  Similarity=0.222  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHhc
Q 010712          215 MATEVEKLRAELMNA  229 (503)
Q Consensus       215 m~rEIekLraELekl  229 (503)
                      +.+.+..|...|.+|
T Consensus       235 ~~~~~~~L~~~l~~~  249 (251)
T 2fic_A          235 MSKLNQNLNDVLVGL  249 (251)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            345556666665554

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=97.36  E-value=0.0032  Score=53.98  Aligned_cols=63  Identities=21%  Similarity=0.267  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712          107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ  169 (503)
Q Consensus       107 el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq  169 (503)
                      ++.+|++.+.+++++++.+.-|+++++-.+.+...-+..|..+..++++|..+|..|+.++++
T Consensus        46 ~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~  108 (110)
T 2v4h_A           46 LIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK  108 (110)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            334444445555555666777777777788888888888888888888888888777766554

>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A

Probab=97.32  E-value=0.059  Score=49.87  Aligned_cols=94  Identities=13%  Similarity=0.097  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHH
Q 010712          140 QNLVVAREELIAKVHQLTQDLQR--AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES----LQVMEKNYI  213 (503)
Q Consensus       140 qqL~~erqeLe~qiq~L~~ELqr--lk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq----lqemEk~L~  213 (503)
                      .+......++...+.+.+..+..  .-.++..+..+.++.+.++.++...+..++.+......+...    ...+...+.
T Consensus       109 ~~f~~~~~e~~~Wl~~~e~~l~~~~~g~~~~~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~~~~~~~~I~~~~~  188 (213)
T 1cun_A          109 QQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMK  188 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            44445555555655554433311  001223344455555555555555555555444444333321    223444455


Q ss_pred             HHHHHHHHHHHHHHhccccc
Q 010712          214 TMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       214 sm~rEIekLraELekle~el  233 (503)
                      .+....+.|...+++.+..|
T Consensus       189 ~l~~~w~~l~~~~~~R~~~L  208 (213)
T 1cun_A          189 GLKGKVSDLEKAAAQRKAKL  208 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555444433

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=97.28  E-value=0.058  Score=53.58  Aligned_cols=45  Identities=20%  Similarity=0.307  Sum_probs=19.8

Q ss_pred             CCChHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHH
Q 010712           45 MPPPEVMEQKIASQHVEMQK----LATE-NQRLAATHGTLRQELAAAQHE   89 (503)
Q Consensus        45 ~p~p~~LEqeIe~~~~EIq~----Le~e-nqrLa~e~~~LrqeLa~lq~E   89 (503)
                      .+....|.++|.....+++.    ...+ .++|..+++.++++|.-...+
T Consensus        10 ~~~~e~lr~~l~~~~eel~~~L~P~~~~l~~~l~~~le~lr~~L~Py~~e   59 (273)
T 3s84_A           10 AKDSEKLKEEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQ   59 (273)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555444444433    2222 234455555666555544333

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=97.25  E-value=0.066  Score=53.14  Aligned_cols=12  Identities=17%  Similarity=-0.194  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHH
Q 010712          191 YEYEKKFYNDHL  202 (503)
Q Consensus       191 le~ekk~~~el~  202 (503)
                      ++.+++.+.++.
T Consensus       200 ~e~l~~~l~~~~  211 (273)
T 3s84_A          200 TEGLQKSLAELG  211 (273)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHH
Confidence            344444444443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=97.24  E-value=0.0071  Score=63.74  Aligned_cols=30  Identities=13%  Similarity=0.194  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          201 HLESLQVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       201 l~eqlqemEk~L~sm~rEIekLraELekle  230 (503)
                      ..++++++|.++..+..+|+.++++|+.++
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (471)
T 3mq9_A          441 GQKKVEELEGEITTLNHKLQDASAEVERLR  470 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345677777777788888888888877654

>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C

Probab=97.24  E-value=0.15  Score=48.70  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712          138 EAQNLVVAREELIAKVHQLTQDL  160 (503)
Q Consensus       138 ELqqL~~erqeLe~qiq~L~~EL  160 (503)
                      |+.+|..+-.+...++..+..+|
T Consensus       120 Evr~La~~t~~~~~~I~~~i~~i  142 (213)
T 3g67_A          120 EVQNLSNETNEVTKQIVEKAREI  142 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444333333

>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1

Probab=97.22  E-value=0.057  Score=50.28  Aligned_cols=94  Identities=5%  Similarity=-0.017  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHH
Q 010712          140 QNLVVAREELIAKVHQLTQDLQR--AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES----LQVMEKNYI  213 (503)
Q Consensus       140 qqL~~erqeLe~qiq~L~~ELqr--lk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq----lqemEk~L~  213 (503)
                      .+......++...+.+.+..+..  .-.++..+..+.++.+.++.+|......++.+......+...    ...+...+.
T Consensus       112 ~qf~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~  191 (216)
T 1u5p_A          112 HQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLA  191 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            44455555666666554432210  001233344555555555555555555444444444333321    234555566


Q ss_pred             HHHHHHHHHHHHHHhccccc
Q 010712          214 TMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       214 sm~rEIekLraELekle~el  233 (503)
                      .+....+.|...+......|
T Consensus       192 ~l~~~W~~L~~~~~~R~~~L  211 (216)
T 1u5p_A          192 QFVDHWKELKQLAAARGQRL  211 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666555444

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=97.22  E-value=0.014  Score=49.44  Aligned_cols=23  Identities=26%  Similarity=0.309  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712          205 LQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       205 lqemEk~L~sm~rEIekLraELe  227 (503)
                      +...++.....+.++..|.+.|.
T Consensus        74 Le~~ek~~~~AE~evasLnRriq   96 (101)
T 3u59_A           74 LEQAEKKATDAEAEVASLNRRIQ   96 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444443

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=97.16  E-value=0.014  Score=50.17  Aligned_cols=84  Identities=14%  Similarity=0.254  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL-QRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~EL-qrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq  206 (503)
                      +.++|...+.....+...+.+|..+++.+..+. .+++.+..+|..++.+|..-..|+..++..++........+...+.
T Consensus        13 ~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~   92 (107)
T 2no2_A           13 VTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFA   92 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444444222 2344444555555566666555665555555544444444444443


Q ss_pred             HHHHH
Q 010712          207 VMEKN  211 (503)
Q Consensus       207 emEk~  211 (503)
                      +++.+
T Consensus        93 ~l~~E   97 (107)
T 2no2_A           93 ELEKE   97 (107)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=97.11  E-value=0.015  Score=49.32  Aligned_cols=49  Identities=6%  Similarity=0.079  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL  222 (503)
Q Consensus       174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekL  222 (503)
                      ...|..+..+++.+...+...+..+....+...+.|.++.+|.+.|+-|
T Consensus        50 ~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll   98 (101)
T 3u59_A           50 QKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444445555555555666666666666544

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=97.10  E-value=0.0058  Score=52.37  Aligned_cols=79  Identities=8%  Similarity=0.151  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010712          132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN  211 (503)
Q Consensus       132 LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~  211 (503)
                      |..|+..|..+...+.+...++++|+.+|.+...++++       |.-|+++++--+.+++.++...+.+..+...++.+
T Consensus        26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~-------I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~q   98 (110)
T 2v4h_A           26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET-------VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQ   98 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHH
Confidence            33444444444444444444455555555444444444       44444444444444444444444444433344333


Q ss_pred             HHHHHH
Q 010712          212 YITMAT  217 (503)
Q Consensus       212 L~sm~r  217 (503)
                      +..|.+
T Consensus        99 l~~Lq~  104 (110)
T 2v4h_A           99 LEQLQR  104 (110)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=97.05  E-value=0.29  Score=51.86  Aligned_cols=30  Identities=10%  Similarity=0.232  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          200 DHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       200 el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      .+.+++.++++.|...+..|..|..+..++
T Consensus       239 ~LLkkh~~le~~l~~~~~~I~~L~~qA~~l  268 (450)
T 3r6n_A          239 EQIKELEKEREKILEYKRQVQNLVNKSKKI  268 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344445555555555555555555555443

>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1

Probab=97.02  E-value=0.12  Score=50.85  Aligned_cols=64  Identities=11%  Similarity=0.111  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE----SLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       170 i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e----qlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      +..+..+.+.++.++...+..++.+......+..    ....+...+..+....+.|...++..+..|
T Consensus       250 ~~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~R~~~L  317 (322)
T 1u4q_A          250 IQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKL  317 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555544444433332    123344455555555555555555544444

>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}

Probab=97.00  E-value=0.073  Score=52.62  Aligned_cols=88  Identities=7%  Similarity=0.195  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 010712          141 NLVVAREELIAKVHQLTQDLQRA--HTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES----LQVMEKNYIT  214 (503)
Q Consensus       141 qL~~erqeLe~qiq~L~~ELqrl--k~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq----lqemEk~L~s  214 (503)
                      +......++...+...+..|...  -.++..+..+..+...++.||...+..++.+......+...    ..++.+.+..
T Consensus       223 ~F~~~~~~l~~Wl~~~~~~l~~~~~~~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~~~~~~~~i~~~l~~  302 (323)
T 3edv_A          223 RFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQ  302 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            33444445555555544444321  01222233344444445555554444444444333333221    2345555555


Q ss_pred             HHHHHHHHHHHHHh
Q 010712          215 MATEVEKLRAELMN  228 (503)
Q Consensus       215 m~rEIekLraELek  228 (503)
                      +....+.|....++
T Consensus       303 L~~~w~~l~~~w~~  316 (323)
T 3edv_A          303 LTEKRKEMIDKWED  316 (323)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555555444

>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A

Probab=96.99  E-value=0.079  Score=49.74  Aligned_cols=29  Identities=3%  Similarity=-0.042  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          206 QVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       206 qemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      ..+...+..+....+.|...++..+..|.
T Consensus       183 ~~i~~~~~~l~~~W~~L~~~~~~R~~~L~  211 (218)
T 3edu_A          183 EAIQNKEQEVSAAWQALLDACAGRRTQLV  211 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666666666655555444

>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1

Probab=96.95  E-value=0.1  Score=51.35  Aligned_cols=11  Identities=27%  Similarity=0.193  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHh
Q 010712          218 EVEKLRAELMN  228 (503)
Q Consensus       218 EIekLraELek  228 (503)
                      +++.+..=|.+
T Consensus       223 ~~~~~~~Wl~~  233 (322)
T 1u4q_A          223 NVEEEEAWINE  233 (322)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=96.92  E-value=0.013  Score=52.49  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712          206 QVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       206 qemEk~L~sm~rEIekLraELe  227 (503)
                      .++.+++..+++++.+|+.++.
T Consensus       113 ~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A          113 KELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444443

>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1

Probab=96.92  E-value=0.19  Score=46.64  Aligned_cols=94  Identities=10%  Similarity=0.029  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHH
Q 010712          139 AQNLVVAREELIAKVHQLTQDLQR--AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES----LQVMEKNY  212 (503)
Q Consensus       139 LqqL~~erqeLe~qiq~L~~ELqr--lk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq----lqemEk~L  212 (503)
                      ++.......++...+...+..|..  +-.++..+..+.++.+.++.+|...+..++.+......+.+.    ...+...+
T Consensus       109 l~~F~~~~~~~~~Wl~~~E~~l~~~~~g~~~~~v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~~~  188 (214)
T 1s35_A          109 FQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKV  188 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            444555555555555544433321  001223334444444444444444444444443333333221    12233344


Q ss_pred             HHHHHHHHHHHHHHHhcccc
Q 010712          213 ITMATEVEKLRAELMNAPNV  232 (503)
Q Consensus       213 ~sm~rEIekLraELekle~e  232 (503)
                      ..+....+.|...+++....
T Consensus       189 ~~l~~rw~~l~~~~~~R~~~  208 (214)
T 1s35_A          189 QLIEDRHRKNNEKAQEASVL  208 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444455555544444333

>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2

Probab=96.85  E-value=0.026  Score=57.93  Aligned_cols=68  Identities=15%  Similarity=0.163  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Q 010712           72 LAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK----TAEPVKLEFQKSKTEA  139 (503)
Q Consensus        72 La~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~----~le~Lk~ELeqLraEL  139 (503)
                      |...+..|+.++...+...+.+...|..++.........|......+...+.    .+..|+++|++++.++
T Consensus       121 l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I  192 (346)
T 2nrj_A          121 LKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSV  192 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444333444444444333332    2344555555444443

>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C

Probab=96.85  E-value=0.35  Score=46.19  Aligned_cols=12  Identities=17%  Similarity=0.180  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q 010712           55 IASQHVEMQKLA   66 (503)
Q Consensus        55 Ie~~~~EIq~Le   66 (503)
                      +..+...++.+.
T Consensus         9 ~~em~~~i~~i~   20 (213)
T 3g67_A            9 FVNLNRLFQELV   20 (213)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=96.84  E-value=0.036  Score=46.66  Aligned_cols=33  Identities=6%  Similarity=0.164  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraELekle  230 (503)
                      +..+.-++-++++++.++...+.-....|++|+
T Consensus        62 yn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~   94 (96)
T 3q8t_A           62 YSEFKRQQLELDDELKSVENQMRYAQMQLDKLK   94 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333344444444445555554444445555543

>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}

Probab=96.84  E-value=0.1  Score=48.99  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712           71 RLAATHGTLRQELAAAQHELQI   92 (503)
Q Consensus        71 rLa~e~~~LrqeLa~lq~EL~~   92 (503)
                      .+..++..++.+|......+..
T Consensus        50 ~ll~~H~~l~~ei~~~~~~~~~   71 (218)
T 3fb2_A           50 ALLERHQEHRTEIDARAGTFQA   71 (218)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHH
Confidence            3444455555555543333333

>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}

Probab=96.84  E-value=0.32  Score=45.62  Aligned_cols=162  Identities=7%  Similarity=0.024  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHH
Q 010712           68 ENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE-FQKSKTEAQNLVVAR  146 (503)
Q Consensus        68 enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~E-LeqLraELqqL~~er  146 (503)
                      ..+.+...|..|..+|+.....|..|......+..+...   .+.+++..++.....+..+..+ ...|. .|.+...+.
T Consensus        39 ~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~~~~---~i~~rl~~l~~~~~~L~~~a~~R~~~L~-~L~~f~~~~  114 (210)
T 3pdy_A           39 SVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATRG---AYRDCLGRLDLQYAKLLNSSKARLRSLE-SLHSFVAAA  114 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            355666777788888888888888877766554432111   2444444444433333222211 11222 455555666


Q ss_pred             HHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 010712          147 EELIAKVHQLTQDLQRA--HTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES----LQVMEKNYITMATEVE  220 (503)
Q Consensus       147 qeLe~qiq~L~~ELqrl--k~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq----lqemEk~L~sm~rEIe  220 (503)
                      .++...|.+.+..+...  -.++..+..+....+.++.||...+..+..+......+...    ...++..+..+....+
T Consensus       115 ~~~~~Wl~eke~~~~s~d~g~~~~~v~~l~~k~~~f~~el~~~~~~v~~l~~~~~~Ll~~~h~~~~~I~~~~~~l~~~W~  194 (210)
T 3pdy_A          115 TKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWS  194 (210)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccccCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence            66666666665555321  12234456666667777777766666666666555555442    3345555555555555


Q ss_pred             HHHHHHHhccccc
Q 010712          221 KLRAELMNAPNVD  233 (503)
Q Consensus       221 kLraELekle~el  233 (503)
                      .|..-+.-.+..|
T Consensus       195 ~L~~L~~~~e~hL  207 (210)
T 3pdy_A          195 WMLQLCCCIEAHL  207 (210)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            5555544444433

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=96.83  E-value=0.01  Score=49.60  Aligned_cols=67  Identities=19%  Similarity=0.273  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010712          104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI  170 (503)
Q Consensus       104 ~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi  170 (503)
                      ++..|.+|++.+..++..+..+.-|+.+++-.+.+...-++.|..+..+++.|..+|..++.++.++
T Consensus        21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L   87 (94)
T 3jsv_C           21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL   87 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4556777788888888888888889999999999999999999999888888888888877766554

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.82  E-value=0.0055  Score=54.59  Aligned_cols=89  Identities=9%  Similarity=0.082  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq  206 (503)
                      .+..++..+..++..-+..+.+.+.++..+..+|+.|...+         .++...-....|.+....++.+..+..++.
T Consensus        43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL---------FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~  113 (135)
T 2e7s_A           43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL---------FDEANNLVADARMEKYAIEILNKRLTEQLR  113 (135)
T ss_dssp             THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH---------HHHHHHHHHHTTHHHHHHHHHHHHHHHTTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555444321         111111122223333334444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010712          207 VMEKNYITMATEVEKLRA  224 (503)
Q Consensus       207 emEk~L~sm~rEIekLra  224 (503)
                      +.+.-|.+++..+..|+.
T Consensus       114 e~e~ll~~lq~QL~~LK~  131 (135)
T 2e7s_A          114 EKDMLLDTLTLQLKNLKK  131 (135)
T ss_dssp             HHHHCC------------
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555454444444443

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=96.80  E-value=0.0035  Score=68.55  Aligned_cols=64  Identities=17%  Similarity=0.326  Sum_probs=18.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          101 KSERELQMRNLTEKIAKMEAELKTAEP----VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (503)
Q Consensus       101 kae~E~el~eL~eki~kLEaEL~~le~----Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk  164 (503)
                      +.+.+.+..+|..++..++++.+....    ....+..|..+++.++.+...|+.+..+++.++++|.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~  397 (575)
T 2i1j_A          330 RERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLE  397 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346666777777777777776654221    1122333444444444444455554444444444443

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=96.76  E-value=0.0076  Score=50.33  Aligned_cols=84  Identities=11%  Similarity=0.179  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI  213 (503)
Q Consensus       134 qLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~  213 (503)
                      .|+..|..+...+......|++|..++.+.+.++       ..|+-|+++++--+.++..++...+.+..+...+...+.
T Consensus         6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~-------E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~   78 (94)
T 3jsv_C            6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM-------ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE   78 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3344444444444444444444444444444433       344445555555555555555555555444444444444


Q ss_pred             HHHHHHHHHHH
Q 010712          214 TMATEVEKLRA  224 (503)
Q Consensus       214 sm~rEIekLra  224 (503)
                      .+.+++.+|..
T Consensus        79 ~lq~q~~~L~~   89 (94)
T 3jsv_C           79 QLQREFNKLKV   89 (94)
T ss_dssp             HHHHTTC----
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=96.76  E-value=0.02  Score=47.96  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=29.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLR   80 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lr   80 (503)
                      +...|.+++....++|+.|+.+|+.|+.++..++
T Consensus        10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~   43 (93)
T 3s4r_A           10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLK   43 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678999999999999999999999988877664

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=96.75  E-value=0.42  Score=50.65  Aligned_cols=30  Identities=13%  Similarity=0.102  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          205 LQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       205 lqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      ..+|-+++..++++|...+..|..|..+..
T Consensus       237 ~e~LLkkh~~le~~l~~~~~~I~~L~~qA~  266 (450)
T 3r6n_A          237 LLEQIKELEKEREKILEYKRQVQNLVNKSK  266 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666677778888888888888877654

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=96.73  E-value=0.5  Score=46.25  Aligned_cols=14  Identities=7%  Similarity=0.067  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHhcc
Q 010712          217 TEVEKLRAELMNAP  230 (503)
Q Consensus       217 rEIekLraELekle  230 (503)
                      .-++.|+..|+.+.
T Consensus       245 ~~~~~l~~~~~~id  258 (301)
T 2efk_A          245 KCLEGMKVAANAVD  258 (301)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcC
Confidence            33445555555444

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.72  E-value=0.073  Score=44.76  Aligned_cols=32  Identities=9%  Similarity=0.208  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      ++..|+.+|..-+..+.+++.++..+..+|..
T Consensus        27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe   58 (97)
T 2eqb_B           27 EVKRLREDIAKENELRTKAEEEADKLNKEVED   58 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444333

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=96.71  E-value=0.029  Score=59.86  Aligned_cols=25  Identities=16%  Similarity=0.169  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           60 VEMQKLATENQRLAATHGTLRQELA   84 (503)
Q Consensus        60 ~EIq~Le~enqrLa~e~~~LrqeLa   84 (503)
                      ++|..+..++..++.+...--..|.
T Consensus        39 ~el~~f~keRa~iE~eYAk~L~kLa   63 (486)
T 3haj_A           39 SDLMNCLHERARIEKAYAQQLTEWA   63 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555544333443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=96.68  E-value=0.016  Score=61.05  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccc
Q 010712          210 KNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       210 k~L~sm~rEIekLraELekle~el  233 (503)
                      ++++.++.||.+|..+|++++.++
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~  466 (471)
T 3mq9_A          443 KKVEELEGEITTLNHKLQDASAEV  466 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.68  E-value=0.036  Score=46.64  Aligned_cols=32  Identities=16%  Similarity=0.291  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      +++.++.+|.++..++..++.++..|..+|.+
T Consensus         6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~e   37 (97)
T 2eqb_B            6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAK   37 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            34444555555555555555555555544443

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=96.68  E-value=0.072  Score=45.71  Aligned_cols=93  Identities=15%  Similarity=0.146  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV-QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ  206 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~el-qqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq  206 (503)
                      |..+...+.++|...+....+++..+.+|..+|.+++.+. .+..+-...|+.+++||.....++..++..++.....-.
T Consensus         6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~   85 (107)
T 2no2_A            6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEA   85 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556667777888888888888888888888876432 234455566777888887777777776665555544444


Q ss_pred             HHHHHHHHHHHHHH
Q 010712          207 VMEKNYITMATEVE  220 (503)
Q Consensus       207 emEk~L~sm~rEIe  220 (503)
                      .+...+..+..|.+
T Consensus        86 ~l~~~~~~l~~Ek~   99 (107)
T 2no2_A           86 NWAAEFAELEKERD   99 (107)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444433333333

>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2

Probab=96.67  E-value=0.023  Score=58.24  Aligned_cols=38  Identities=13%  Similarity=0.059  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          193 YEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       193 ~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle  230 (503)
                      .++..+..+...+......++.|......|..+++.+.
T Consensus       254 ~~~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~l~  291 (346)
T 2nrj_A          254 VAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVL  291 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555556666666666666655543

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.67  E-value=0.0021  Score=57.32  Aligned_cols=15  Identities=7%  Similarity=0.213  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKL   65 (503)
Q Consensus        51 LEqeIe~~~~EIq~L   65 (503)
                      ||++|.....+|...
T Consensus         6 LEd~L~~~r~~l~~~   20 (135)
T 2e7s_A            6 LEEQLNKSLKTIASQ   20 (135)
T ss_dssp             CCSTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444433

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=96.66  E-value=0.009  Score=51.24  Aligned_cols=32  Identities=16%  Similarity=0.253  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      ++.+...++.+++++..+..++++++..|..+
T Consensus        79 ~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~  110 (117)
T 2zqm_A           79 IETLEVRLNALERQEKKLNEKLKELTAQIQSA  110 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444555555555555555555555443

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=96.62  E-value=0.0094  Score=52.25  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010712          102 SERELQMRNLTEKIAKMEAEL  122 (503)
Q Consensus       102 ae~E~el~eL~eki~kLEaEL  122 (503)
                      .+.+..+..|..+|..|++|+
T Consensus        36 ~E~q~~v~ql~~~i~~Le~eL   56 (120)
T 3i00_A           36 TESQRVVLQLKGHVSELEADL   56 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444433

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=96.59  E-value=0.023  Score=49.13  Aligned_cols=53  Identities=15%  Similarity=0.106  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHH
Q 010712           69 NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAE  121 (503)
Q Consensus        69 nqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaE  121 (503)
                      -.+|..+...|+++|..+..+...|...+.....+...+|..|.+++..-+..
T Consensus         8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~   60 (112)
T 1x79_B            8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEIL   60 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555555555554444444444555555555555554443

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=96.58  E-value=0.27  Score=52.29  Aligned_cols=12  Identities=17%  Similarity=0.188  Sum_probs=5.2

Q ss_pred             HHHHHHHHHhcc
Q 010712          219 VEKLRAELMNAP  230 (503)
Q Consensus       219 IekLraELekle  230 (503)
                      .+.|+..|+.+.
T Consensus       267 ~e~l~~~i~~id  278 (486)
T 3haj_A          267 YHDLEQSIRAAD  278 (486)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCC
Confidence            344444444433

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=96.55  E-value=0.034  Score=47.97  Aligned_cols=32  Identities=16%  Similarity=0.154  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (503)
Q Consensus       130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELq  161 (503)
                      .+|.+.+.-|.+...+.......+..|+..|.
T Consensus        32 ~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~   63 (121)
T 3mq7_A           32 QELTEAQKGFQDVEAQAATANHTVMALMASLD   63 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444443344433333333334444444443

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=96.51  E-value=0.049  Score=47.06  Aligned_cols=92  Identities=15%  Similarity=0.208  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV  207 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqe  207 (503)
                      |..++.+++.+|.++...+.+|+...+....+      -..+|..|...+...++.|..++..+..++...   ..++..
T Consensus        11 lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~------~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~v---q~qL~~   81 (112)
T 1x79_B           11 LQLMLRQANDQLEKTMKDKQELEDFIKQSSED------SSHQISALVLRAQASEILLEELQQGLSQAKRDV---QEQMAV   81 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            33444444445555554444444442221111      112333344444444444444444443333222   233344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 010712          208 MEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       208 mEk~L~sm~rEIekLraELek  228 (503)
                      +....+.+..+|.+|..+=+.
T Consensus        82 Lt~~Re~V~~eL~rLQ~eNd~  102 (112)
T 1x79_B           82 LMQSREQVSEELVRLQKDNDS  102 (112)
T ss_dssp             HHHHHHHHHTC----------
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            444444445555555544333

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=96.51  E-value=0.048  Score=47.07  Aligned_cols=30  Identities=20%  Similarity=0.219  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (503)
Q Consensus       132 LeqLraELqqL~~erqeLe~qiq~L~~ELq  161 (503)
                      +++|+.||+.|..++++...+++.|..+.+
T Consensus        73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~  102 (121)
T 3mq7_A           73 VEELEGEITTLNHKLQDASAEVERLRRENQ  102 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            333334444444444444444444433333

>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*

Probab=96.50  E-value=0.12  Score=54.58  Aligned_cols=11  Identities=18%  Similarity=0.392  Sum_probs=4.6

Q ss_pred             CChHHHHHHHH
Q 010712           46 PPPEVMEQKIA   56 (503)
Q Consensus        46 p~p~~LEqeIe   56 (503)
                      ..+..|.++++
T Consensus       291 lt~~elkqrqe  301 (551)
T 2b5u_A          291 LSPDQVKQRQD  301 (551)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            34444444433

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=96.50  E-value=0.56  Score=45.79  Aligned_cols=15  Identities=0%  Similarity=-0.051  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHhcc
Q 010712          216 ATEVEKLRAELMNAP  230 (503)
Q Consensus       216 ~rEIekLraELekle  230 (503)
                      ..-++.|...++.+.
T Consensus       251 ~~~~~~l~~~~~~id  265 (305)
T 2efl_A          251 GKCLDGIVKAAESID  265 (305)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            334445555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.48  E-value=0.17  Score=53.29  Aligned_cols=24  Identities=13%  Similarity=-0.058  Sum_probs=8.5

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHH
Q 010712          184 YHHCRGTYEYEKKFYNDHLESLQV  207 (503)
Q Consensus       184 Lq~lR~ele~ekk~~~el~eqlqe  207 (503)
                      +++++++.+.+++.+.++.+++.+
T Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~  467 (487)
T 3oja_A          444 ETQLAEENARLKKLNGEADLALAS  467 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhhhhhHh
Confidence            333333333333333333333333

>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A

Probab=96.48  E-value=0.55  Score=46.16  Aligned_cols=21  Identities=0%  Similarity=-0.268  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHhccccc
Q 010712          213 ITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       213 ~sm~rEIekLraELekle~el  233 (503)
                      .....+++.+..=|.+.+..+
T Consensus       220 ~~f~~~~~e~~~Wl~ek~~~L  240 (326)
T 3kbt_A          220 HRYFYTGAEILGLIDEKHREL  240 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            344455555555555544333

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=96.46  E-value=0.015  Score=49.12  Aligned_cols=25  Identities=4%  Similarity=0.183  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          203 ESLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       203 eqlqemEk~L~sm~rEIekLraELe  227 (503)
                      ..++.+++++..+..++++++..|.
T Consensus        79 ~~i~~le~~~~~~~~~l~~lk~~l~  103 (107)
T 1fxk_A           79 LREKTIERQEERVMKKLQEMQVNIQ  103 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444443

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=96.46  E-value=0.11  Score=52.06  Aligned_cols=25  Identities=8%  Similarity=0.126  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           60 VEMQKLATENQRLAATHGTLRQELA   84 (503)
Q Consensus        60 ~EIq~Le~enqrLa~e~~~LrqeLa   84 (503)
                      ++|..+..++..++.+...--..|.
T Consensus        37 ~el~~f~keRa~iE~eYak~L~kLa   61 (337)
T 2x3v_A           37 NDLMSCVQERAKIEKAYAQQLTDWA   61 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566666665554434444

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A

Probab=96.44  E-value=0.73  Score=44.69  Aligned_cols=45  Identities=16%  Similarity=0.133  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI   92 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~   92 (503)
                      +..+|++|+.+...|.+|....+++......+..........|..
T Consensus        23 l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~   67 (265)
T 2q12_A           23 LGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKE   67 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677777777777777666666655444444333333333443

>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.74  Score=44.54  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=10.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHH
Q 010712          169 QIPALLSELESLRQEYHHCRGTYE  192 (503)
Q Consensus       169 qi~~l~~EIe~L~qELq~lR~ele  192 (503)
                      +|..+++||..++.+....+..|.
T Consensus       132 kl~~LeqELvraEae~lvaEAqL~  155 (234)
T 3plt_A          132 KIPVLEQELVRAEAESLVAEAQLS  155 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHH
Confidence            344444444444444444433333

>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1

Probab=96.41  E-value=0.17  Score=48.54  Aligned_cols=16  Identities=19%  Similarity=0.385  Sum_probs=6.7

Q ss_pred             hHHHHHHHHHHHHHHH
Q 010712          170 IPALLSELESLRQEYH  185 (503)
Q Consensus       170 i~~l~~EIe~L~qELq  185 (503)
                      +..+.++++.+..++.
T Consensus       164 v~~ll~~h~~~~~~l~  179 (250)
T 1quu_A          164 IQSLITAHEQFKATLP  179 (250)
T ss_dssp             HHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444443333

>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}

Probab=96.40  E-value=0.35  Score=47.63  Aligned_cols=20  Identities=10%  Similarity=-0.077  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHhccccc
Q 010712          214 TMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       214 sm~rEIekLraELekle~el  233 (503)
                      .....++.+..=|.+.+..+
T Consensus       223 ~F~~~~~~l~~Wl~~~~~~l  242 (323)
T 3edv_A          223 RFFSMVRDLMLWMEDVIRQI  242 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444433

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=96.40  E-value=0.014  Score=51.10  Aligned_cols=13  Identities=38%  Similarity=0.516  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHH
Q 010712          149 LIAKVHQLTQDLQ  161 (503)
Q Consensus       149 Le~qiq~L~~ELq  161 (503)
                      |..+|..|+.+|.
T Consensus        45 l~~~i~~Le~eL~   57 (120)
T 3i00_A           45 LKGHVSELEADLA   57 (120)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444444443

>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A

Probab=96.39  E-value=0.34  Score=47.75  Aligned_cols=27  Identities=4%  Similarity=-0.042  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          207 VMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       207 emEk~L~sm~rEIekLraELekle~el  233 (503)
                      .+...+..+....+.|...+++-+..|
T Consensus       293 ~i~~~~~~l~~~W~~L~~~~~~R~~~L  319 (326)
T 3kbt_A          293 AIQNKEQEVSAAWQALLDACAGRRTQL  319 (326)
T ss_dssp             HHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455555555555554444333

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=96.34  E-value=0.079  Score=52.66  Aligned_cols=37  Identities=14%  Similarity=0.107  Sum_probs=18.0

Q ss_pred             hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIAS---QHVEMQKLATENQRLAATHGTLRQELA   84 (503)
Q Consensus        48 p~~LEqeIe~---~~~EIq~Le~enqrLa~e~~~LrqeLa   84 (503)
                      ...|.+++..   ..++|..+..++..++.+...--..|.
T Consensus        31 ~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLa   70 (312)
T 3abh_A           31 YKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWA   70 (312)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444432   234455555566666665554434443

>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}

Probab=96.31  E-value=0.24  Score=41.41  Aligned_cols=42  Identities=14%  Similarity=0.274  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQ   91 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~   91 (503)
                      ++|++|+...+.|-.|..+..++..-+..+-..+..-.+.|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~   44 (114)
T 2xzr_A            3 QIEDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIE   44 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHH
Confidence            455666666665555555555555555555444444333333

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=96.28  E-value=0.068  Score=45.51  Aligned_cols=40  Identities=15%  Similarity=0.197  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (503)
Q Consensus       126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~  165 (503)
                      ..++.++++++.++.+|...+.++..++..+...+..+..
T Consensus         6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~   45 (112)
T 1l8d_A            6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK   45 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3445556666666777777777777777777777766654

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B

Probab=96.26  E-value=0.97  Score=44.23  Aligned_cols=11  Identities=27%  Similarity=0.425  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 010712          215 MATEVEKLRAE  225 (503)
Q Consensus       215 m~rEIekLraE  225 (503)
                      +...++.+...
T Consensus       238 i~~~~~~~~~~  248 (309)
T 2ch7_A          238 IAAAIEEQTAA  248 (309)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.62  Score=45.08  Aligned_cols=50  Identities=8%  Similarity=0.056  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010712          149 LIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHL  202 (503)
Q Consensus       149 Le~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~  202 (503)
                      +...++.|..+|.+++...-    ....|..|++||.+++.+....++.+..++
T Consensus       109 ~R~~R~~l~~~I~kLk~k~P----~s~kl~~LeqELvraEae~lvaEAqL~n~k  158 (234)
T 3plt_A          109 SRDRKEKITDEIAHLKYKDP----QSTKIPVLEQELVRAEAESLVAEAQLSNIT  158 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHCT----TCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCC----CCchHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence            33344444445544443211    234577888888888777666665555544

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=96.23  E-value=0.13  Score=43.24  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHE   89 (503)
Q Consensus        56 e~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~E   89 (503)
                      ..+..+++.|..+..+|..++..|..+-+.+..+
T Consensus         7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~e   40 (96)
T 3q8t_A            7 EQLQRELKELALEEERLIQELEDVEKNRKVVAEN   40 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4444444444444444444444443333333333

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=96.20  E-value=0.0016  Score=71.26  Aligned_cols=39  Identities=13%  Similarity=0.058  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712          197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR  235 (503)
Q Consensus       197 ~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~  235 (503)
                      .+..+.++.+.-+++-..++.++...+..+++.+.+|..
T Consensus       420 ~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~  458 (575)
T 2i1j_A          420 EVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLA  458 (575)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444445555555555555555555543

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1

Probab=96.20  E-value=1.6  Score=45.97  Aligned_cols=37  Identities=5%  Similarity=0.109  Sum_probs=16.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      +.|++.|...+.|+.++...++.+.+++..+..+++.
T Consensus       352 ~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~  388 (602)
T 1cii_A          352 DKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKH  388 (602)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444433

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=96.18  E-value=0.17  Score=43.66  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712           63 QKLATENQRLAATHGTLRQELA   84 (503)
Q Consensus        63 q~Le~enqrLa~e~~~LrqeLa   84 (503)
                      +.|...+.+|..+++.++.++.
T Consensus         6 rdL~~~~~~L~~E~e~~k~K~~   27 (111)
T 2v66_B            6 RDLQADNQRLKYEVEALKEKLE   27 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444333

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=96.15  E-value=0.52  Score=53.10  Aligned_cols=13  Identities=8%  Similarity=0.278  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHhc
Q 010712          217 TEVEKLRAELMNA  229 (503)
Q Consensus       217 rEIekLraELekl  229 (503)
                      ++++.+..+|+..
T Consensus       645 ~~~~~~~~el~~~  657 (863)
T 1sjj_A          645 NHLRQYEKSIVNY  657 (863)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            3344444444443

>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M

Probab=96.12  E-value=0.42  Score=43.23  Aligned_cols=9  Identities=11%  Similarity=0.065  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 010712           65 LATENQRLA   73 (503)
Q Consensus        65 Le~enqrLa   73 (503)
                      |..++..+.
T Consensus        34 Lk~e~e~l~   42 (155)
T 2oto_A           34 LKARLENAM   42 (155)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=96.11  E-value=0.98  Score=42.81  Aligned_cols=30  Identities=7%  Similarity=0.155  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTLRQ   81 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~Lrq   81 (503)
                      +.+++.+...+..++....+|..++..+.+
T Consensus        36 D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~   65 (244)
T 1uru_A           36 DEIFDDHLNNFNRQQASANRLQKEFNNYIR   65 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555554444433

>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A

Probab=96.07  E-value=0.14  Score=53.74  Aligned_cols=23  Identities=17%  Similarity=0.146  Sum_probs=11.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhH
Q 010712          169 QIPALLSELESLRQEYHHCRGTY  191 (503)
Q Consensus       169 qi~~l~~EIe~L~qELq~lR~el  191 (503)
                      +|..|+.-|+.++.+|++|+..|
T Consensus       133 ~IrvLq~~l~~q~skIQRLE~dI  155 (491)
T 1m1j_A          133 RIKALQNSIQEQVVEMKRLEVDI  155 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555555443

>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}

Probab=96.07  E-value=0.087  Score=47.94  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712           71 RLAATHGTLRQELAAAQHELQI   92 (503)
Q Consensus        71 rLa~e~~~LrqeLa~lq~EL~~   92 (503)
                      .-+..-..++++|+.+=-++..
T Consensus        36 ~sassDa~vrq~Ia~LP~eVsd   57 (152)
T 4fla_A           36 NAASGDATVRQKIASLPQEVQD   57 (152)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGTC
T ss_pred             ccccchHHHHHHHHcCCccccC
Confidence            3344445556666655444443

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C

Probab=96.06  E-value=0.037  Score=57.98  Aligned_cols=49  Identities=12%  Similarity=0.202  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      .+.++..|+.+++..+.       ....+++.|+..+.++...|+.|+..|.+++.
T Consensus        85 ~skkml~~~~~~e~~~~-------~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~  133 (409)
T 1m1j_C           85 KSKKIIEEIIRYENTIL-------AHENTIQQLTDMHIMNSNKITQLKQKIAQLES  133 (409)
T ss_dssp             HHHHHHHHHHHTHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            34444445544444333       33344444444455555555555555555544

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=96.03  E-value=1.2  Score=43.35  Aligned_cols=18  Identities=11%  Similarity=0.113  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010712           60 VEMQKLATENQRLAATHG   77 (503)
Q Consensus        60 ~EIq~Le~enqrLa~e~~   77 (503)
                      ++|..+..++..|+.+..
T Consensus        24 ~el~~f~keRa~iE~eYa   41 (301)
T 2efk_A           24 DRYVKFVKERTEVEQAYA   41 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444555554443

>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}

Probab=96.03  E-value=0.31  Score=46.02  Aligned_cols=162  Identities=9%  Similarity=0.007  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHH
Q 010712           68 ENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVK-LEFQKSKTEAQNLVVAR  146 (503)
Q Consensus        68 enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk-~ELeqLraELqqL~~er  146 (503)
                      ..+.+...|..++.+|......+..+...-..+...   ....+.+++..+......+..+. .....|. ++.+.....
T Consensus        54 ~v~~ll~kh~~~e~ei~~~~~~v~~~~~~~~~~~~~---~~~~i~~~~~~l~~~~~~L~~~~~~R~~~Le-~l~~F~~~~  129 (224)
T 2iak_A           54 SVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAP---LKLSYTDKLHRLESQYAKLLNTSRNQERHLD-TLHNFVTRA  129 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGCCTT---HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            344555566666666666555555544332222211   11223333344433333322111 1112222 455555555


Q ss_pred             HHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 010712          147 EELIAKVHQLTQDLQ--RAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE----SLQVMEKNYITMATEVE  220 (503)
Q Consensus       147 qeLe~qiq~L~~ELq--rlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e----qlqemEk~L~sm~rEIe  220 (503)
                      .++...+.+.+..+.  ..-.++..+..+.+.-+.++.+|...+..++.+......+.+    ....++..+..|....+
T Consensus       130 ~~~~~Wi~eke~~~~s~d~g~~l~~v~~L~~kh~~l~~el~~~~~~v~~v~~~g~~L~~~~h~~~~~I~~~~~~l~~~W~  209 (224)
T 2iak_A          130 TNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWS  209 (224)
T ss_dssp             HHHHHHHHHHHHHHCCC---------------CSSHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            555566555544431  111122233333333344444444444444444333333332    12344555666666666


Q ss_pred             HHHHHHHhccccc
Q 010712          221 KLRAELMNAPNVD  233 (503)
Q Consensus       221 kLraELekle~el  233 (503)
                      .|...++..+..|
T Consensus       210 ~L~~l~~~R~~~L  222 (224)
T 2iak_A          210 WILQLCQCVEQHI  222 (224)
T ss_dssp             HHHHHHC------
T ss_pred             HHHHHHHHHHHHh
Confidence            6666665544443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=95.99  E-value=0.14  Score=46.31  Aligned_cols=57  Identities=12%  Similarity=0.146  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccccc
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM-------ATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm-------~rEIekLraELekle~el  233 (503)
                      |..+..+|.++....+.....+.++..++..+..+|.+|       ...-++...+|..|...|
T Consensus        82 l~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kL  145 (147)
T 2b9c_A           82 LVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLV  145 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444555555555555555555554       333444555555554443

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=95.96  E-value=0.06  Score=43.64  Aligned_cols=56  Identities=20%  Similarity=0.278  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712          113 EKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ  168 (503)
Q Consensus       113 eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq  168 (503)
                      +....|++||+..+.+..||..++..+..+..++++.+.+.++|..+|.+++.++.
T Consensus        14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e   69 (81)
T 1wt6_A           14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME   69 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556778888888888888888888888887777777777777666665554433

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=95.94  E-value=0.5  Score=40.69  Aligned_cols=14  Identities=14%  Similarity=0.292  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHH
Q 010712          107 QMRNLTEKIAKMEA  120 (503)
Q Consensus       107 el~eL~eki~kLEa  120 (503)
                      ..++|..+...|..
T Consensus         4 ~~rdL~~~~~~L~~   17 (111)
T 2v66_B            4 RNRDLQADNQRLKY   17 (111)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            44455554444444

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=95.93  E-value=1.4  Score=43.00  Aligned_cols=18  Identities=22%  Similarity=0.292  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010712           57 SQHVEMQKLATENQRLAA   74 (503)
Q Consensus        57 ~~~~EIq~Le~enqrLa~   74 (503)
                      .+..++..+......+..
T Consensus        80 ~~~~~~e~~a~~h~~~a~   97 (305)
T 2efl_A           80 SNLNEMNDYAGQHEVISE   97 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1

Probab=95.90  E-value=0.58  Score=38.51  Aligned_cols=50  Identities=18%  Similarity=0.121  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL  226 (503)
                      |.+++..|+..-.-|+.++-...++..++..+|+...-++-.+.....+-
T Consensus        48 i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLaE~~Dek   97 (101)
T 1d7m_A           48 LRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAEAIDEK   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Confidence            33344444444444445555555666666666665555555454444443

>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A

Probab=95.89  E-value=0.18  Score=52.91  Aligned_cols=58  Identities=9%  Similarity=0.104  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010712          141 NLVVAREELIAKVHQLTQDLQRAHTDVQQ-IPALLSELESLRQEYHHCRGTYEYEKKFY  198 (503)
Q Consensus       141 qL~~erqeLe~qiq~L~~ELqrlk~elqq-i~~l~~EIe~L~qELq~lR~ele~ekk~~  198 (503)
                      +-.+++.+.++.+.++..+|++....|++ |......|..|+.-|++++.+|+.++..+
T Consensus        97 ~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI  155 (491)
T 1m1j_A           97 PGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI  155 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444445555555555443333321 22222444445555544444444444333

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=95.87  E-value=0.42  Score=43.13  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk  164 (503)
                      .|..+|..++.-.+.......++..++..+..+|.+..
T Consensus        56 ~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLerae   93 (147)
T 2b9c_A           56 IQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE   93 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444555555555555554433

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=95.86  E-value=0.1  Score=43.85  Aligned_cols=15  Identities=0%  Similarity=-0.208  Sum_probs=5.3

Q ss_pred             hhHHHHHHHHHHHHH
Q 010712          189 GTYEYEKKFYNDHLE  203 (503)
Q Consensus       189 ~ele~ekk~~~el~e  203 (503)
                      .+++.+.+.+..+.+
T Consensus        79 ~~i~~le~~~~~~~~   93 (107)
T 1fxk_A           79 LREKTIERQEERVMK   93 (107)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}

Probab=95.85  E-value=1.4  Score=42.43  Aligned_cols=13  Identities=15%  Similarity=0.199  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHhcc
Q 010712          218 EVEKLRAELMNAP  230 (503)
Q Consensus       218 EIekLraELekle  230 (503)
                      -++.++..|+.+.
T Consensus       236 ~~~~~~~~~~~id  248 (276)
T 2v0o_A          236 VHEEFINNMANTT  248 (276)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCC
Confidence            3444444444443

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}

Probab=95.84  E-value=0.59  Score=51.02  Aligned_cols=49  Identities=14%  Similarity=0.131  Sum_probs=31.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        46 p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      ..-..++++++.+...++.++.+++.|+...+.    ..-.-+++..++.++.
T Consensus        12 ~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~----F~~~y~~~~~~~~~~~   60 (585)
T 1y1u_A           12 QKHLQINQRFEELRLITQDTENELKKLQQTQEY----FIIQYQESLRIQAQFA   60 (585)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTTTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhHHHHhhHhHHh
Confidence            344678888998888888888888777654433    3333344444444443

>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}

Probab=95.84  E-value=1.8  Score=43.69  Aligned_cols=16  Identities=19%  Similarity=0.297  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010712          138 EAQNLVVAREELIAKV  153 (503)
Q Consensus       138 ELqqL~~erqeLe~qi  153 (503)
                      |+.+|..+-.+...+|
T Consensus       189 EVRkLAe~t~~at~~I  204 (341)
T 3zx6_A          189 EVRNLAQRSAQAAREI  204 (341)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444443333333333

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=95.84  E-value=1.1  Score=44.24  Aligned_cols=7  Identities=29%  Similarity=0.302  Sum_probs=2.9

Q ss_pred             HHHHHHH
Q 010712          204 SLQVMEK  210 (503)
Q Consensus       204 qlqemEk  210 (503)
                      .+++++.
T Consensus       239 ~~Q~lee  245 (312)
T 3abh_A          239 QCQQFEE  245 (312)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3444443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.81  E-value=0.066  Score=43.63  Aligned_cols=40  Identities=30%  Similarity=0.375  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQH   88 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~   88 (503)
                      ..||.+|....+.|.-|..++..|+.+...|.++.+.++.
T Consensus         9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~   48 (81)
T 2jee_A            9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH   48 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455555555555555444444444444444444444333

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C

Probab=95.80  E-value=0.069  Score=55.96  Aligned_cols=29  Identities=17%  Similarity=0.115  Sum_probs=11.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010712          120 AELKTAEPVKLEFQKSKTEAQNLVVAREE  148 (503)
Q Consensus       120 aEL~~le~Lk~ELeqLraELqqL~~erqe  148 (503)
                      .++..|+.+..||+.+..+++.+...+++
T Consensus        38 ~~l~~LE~~l~elsn~ts~v~~Lvk~iq~   66 (409)
T 1m1j_C           38 GELLEIEGLLQQATNSTGSIEYLIQHIKT   66 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444433333

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=95.79  E-value=0.26  Score=49.82  Aligned_cols=37  Identities=14%  Similarity=0.107  Sum_probs=18.2

Q ss_pred             hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIAS---QHVEMQKLATENQRLAATHGTLRQELA   84 (503)
Q Consensus        48 p~~LEqeIe~---~~~EIq~Le~enqrLa~e~~~LrqeLa   84 (503)
                      ...|.+++..   ..++|..+..++..++.+...--..|.
T Consensus        31 ~~~L~~r~~~g~~~~~el~~f~keRa~IE~eYak~L~kLa   70 (350)
T 3aco_A           31 YKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWA   70 (350)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444432   234455555566666665554434444

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=95.77  E-value=0.38  Score=51.31  Aligned_cols=8  Identities=25%  Similarity=0.372  Sum_probs=3.0

Q ss_pred             HHHHHhhh
Q 010712           89 ELQILHGQ   96 (503)
Q Consensus        89 EL~~L~~q   96 (503)
                      +++.++.+
T Consensus       208 ~l~~l~~q  215 (517)
T 4ad8_A          208 QIDLLAFQ  215 (517)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}

Probab=95.76  E-value=1.5  Score=42.18  Aligned_cols=19  Identities=11%  Similarity=0.209  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010712           60 VEMQKLATENQRLAATHGT   78 (503)
Q Consensus        60 ~EIq~Le~enqrLa~e~~~   78 (503)
                      ++|..+..++..++.+...
T Consensus        35 ~el~~f~~eRa~iE~eYak   53 (276)
T 2v0o_A           35 KELADFVRERATIEEAYSR   53 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.15  Score=46.08  Aligned_cols=22  Identities=18%  Similarity=-0.097  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHH
Q 010712          174 LSELESLRQEYHHCRGTYEYEK  195 (503)
Q Consensus       174 ~~EIe~L~qELq~lR~ele~ek  195 (503)
                      +.|+..|+-++..++..+..++
T Consensus       102 ~DEl~aLqlq~n~lE~kl~kLq  123 (152)
T 3a7p_A          102 NAALISGTIENNVLQQKLSDLK  123 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444333333

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=95.71  E-value=2.3  Score=43.80  Aligned_cols=34  Identities=15%  Similarity=0.132  Sum_probs=19.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQ   81 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrq   81 (503)
                      +..+|++|+.++..|.+|.....++......+..
T Consensus        46 l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~   79 (407)
T 4h8s_A           46 LSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCL   79 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666655555554444433

>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*

Probab=95.69  E-value=2.1  Score=45.45  Aligned_cols=15  Identities=20%  Similarity=0.273  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHH
Q 010712           77 GTLRQELAAAQHELQ   91 (503)
Q Consensus        77 ~~LrqeLa~lq~EL~   91 (503)
                      +.++.+++.++.||.
T Consensus       317 ~~Aer~~e~a~ael~  331 (551)
T 2b5u_A          317 EAAERNYERARAELN  331 (551)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444444444433

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.60  E-value=0.28  Score=43.83  Aligned_cols=37  Identities=19%  Similarity=0.178  Sum_probs=14.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEV  219 (503)
Q Consensus       183 ELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEI  219 (503)
                      ++..++.+++.+++.+.++++++.++++++..++.++
T Consensus        97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~  133 (138)
T 3hnw_A           97 ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL  133 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333344444444444433

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=95.59  E-value=0.067  Score=47.02  Aligned_cols=15  Identities=20%  Similarity=0.361  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHhhHH
Q 010712          178 ESLRQEYHHCRGTYE  192 (503)
Q Consensus       178 e~L~qELq~lR~ele  192 (503)
                      +-+...++.++..++
T Consensus        91 ~~l~~r~~~l~~~~~  105 (133)
T 1fxk_C           91 ESIKSQKNELESTLQ  105 (133)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A

Probab=95.57  E-value=1.4  Score=40.41  Aligned_cols=23  Identities=9%  Similarity=0.212  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712          204 SLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraEL  226 (503)
                      .+..+...-..+...+.+-+..|
T Consensus       186 ~~~~l~~~w~~l~~~~~~R~~~L  208 (213)
T 1cun_A          186 KMKGLKGKVSDLEKAAAQRKAKL  208 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1

Probab=95.54  E-value=2.9  Score=43.94  Aligned_cols=24  Identities=8%  Similarity=-0.025  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          139 AQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       139 LqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      +...+++...++..|+.+...+..
T Consensus       358 lddArNEItsaeSaInslqaqvSa  381 (602)
T 1cii_A          358 LLDARNKITSAESAVNSARNNLSA  381 (602)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444433

>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}

Probab=95.50  E-value=0.37  Score=43.19  Aligned_cols=37  Identities=14%  Similarity=0.003  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 010712           76 HGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLT  112 (503)
Q Consensus        76 ~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~  112 (503)
                      +..|+..|+..+..+..-+..-+++..+...-+.+-+
T Consensus        22 l~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq   58 (158)
T 3tul_A           22 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQ   58 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445445554444444433333334444443333333

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=95.50  E-value=1.7  Score=41.57  Aligned_cols=28  Identities=21%  Similarity=0.228  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTL   79 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~L   79 (503)
                      +.+++.+...+..++....+|..+...+
T Consensus        51 D~~Fe~~~~~f~~~e~~~~~l~k~~k~y   78 (251)
T 2fic_A           51 DEQFEQCVQNFNKQLTEGTRLQKDLRTY   78 (251)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444333

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=95.49  E-value=0.053  Score=44.04  Aligned_cols=61  Identities=18%  Similarity=0.258  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL  111 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL  111 (503)
                      |+.+-+.+..+++.++.+|+.|+.++..|+++|+..+.+-.+++.++..+...++.+|-+|
T Consensus         4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL   64 (79)
T 3cvf_A            4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFEL   64 (79)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4555666777888888899999998888888888888777777666655444444444333

>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}

Probab=95.49  E-value=0.95  Score=42.21  Aligned_cols=16  Identities=13%  Similarity=0.210  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010712          173 LLSELESLRQEYHHCR  188 (503)
Q Consensus       173 l~~EIe~L~qELq~lR  188 (503)
                      +..+.+.++.++....
T Consensus       157 ll~~h~~f~~~l~~~~  172 (218)
T 3fb2_A          157 LIKKHEDFDKAINVQE  172 (218)
T ss_dssp             -----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhH
Confidence            3333333444443333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.082  Score=47.85  Aligned_cols=28  Identities=11%  Similarity=-0.053  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLES  204 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eq  204 (503)
                      ++.++.|+..++.++..++.++..++++
T Consensus        98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~E  125 (152)
T 3a7p_A           98 TERLNAALISGTIENNVLQQKLSDLKKE  125 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455544444444444444443333

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=95.48  E-value=0.81  Score=50.11  Aligned_cols=17  Identities=12%  Similarity=0.218  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHhcccc
Q 010712          216 ATEVEKLRAELMNAPNV  232 (503)
Q Consensus       216 ~rEIekLraELekle~e  232 (503)
                      +.+.+.|+.|+..|+++
T Consensus       566 ~~~~~~~~~ei~~l~~~  582 (592)
T 1f5n_A          566 QKESRIMKNEIQDLQTK  582 (592)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            44455555555555443

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=95.47  E-value=0.041  Score=54.41  Aligned_cols=29  Identities=7%  Similarity=0.104  Sum_probs=12.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           45 MPPPEVMEQKIASQHVEMQKLATENQRLA   73 (503)
Q Consensus        45 ~p~p~~LEqeIe~~~~EIq~Le~enqrLa   73 (503)
                      -+.+..+-+.+......|..+...+.+|.
T Consensus        40 ~~~~~~F~~~~~~I~~~I~~i~~~l~~L~   68 (279)
T 2xhe_B           40 EPFMADFFNRVKRIRDNIEDIEQAIEQVA   68 (279)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444443

>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1

Probab=95.47  E-value=0.75  Score=42.43  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712           71 RLAATHGTLRQELAAAQHELQIL   93 (503)
Q Consensus        71 rLa~e~~~LrqeLa~lq~EL~~L   93 (503)
                      .+...|..++.+|...+..+..+
T Consensus        37 ~ll~~h~~~~~ei~~~~~~~~~~   59 (214)
T 1s35_A           37 QLLQQHAGIKDEIDGHQDSYQRV   59 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHH
Confidence            33344444444444444333333

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=95.46  E-value=1.5  Score=47.93  Aligned_cols=20  Identities=20%  Similarity=0.405  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010712          208 MEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       208 mEk~L~sm~rEIekLraELe  227 (503)
                      .+++...|.+||+.|+.+..
T Consensus       565 ~~~~~~~~~~ei~~l~~~~~  584 (592)
T 1f5n_A          565 FQKESRIMKNEIQDLQTKMR  584 (592)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            44566678888888888743

>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}

Probab=95.46  E-value=0.055  Score=48.51  Aligned_cols=41  Identities=17%  Similarity=0.181  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ  168 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq  168 (503)
                      ++.+|+..+..+..+...+..+..++..|+.+++++..+.+
T Consensus        71 l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQ  111 (146)
T 2xnx_M           71 ITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQ  111 (146)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            44444444444444455555555555555555555544433

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=95.38  E-value=2.2  Score=43.01  Aligned_cols=10  Identities=20%  Similarity=0.222  Sum_probs=4.8

Q ss_pred             HHHHHHhccc
Q 010712          222 LRAELMNAPN  231 (503)
Q Consensus       222 LraELekle~  231 (503)
                      |+..|+.+..
T Consensus       277 l~~~i~~id~  286 (350)
T 3aco_A          277 LEQSIRAADA  286 (350)
T ss_dssp             HHHHHHTCCH
T ss_pred             HHHHHHhCCH
Confidence            5555555443

>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}

Probab=95.33  E-value=0.27  Score=49.52  Aligned_cols=29  Identities=14%  Similarity=0.077  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHhhhhc
Q 010712           70 QRLAATHGTLRQELA-AAQHELQILHGQIG   98 (503)
Q Consensus        70 qrLa~e~~~LrqeLa-~lq~EL~~L~~qL~   98 (503)
                      .+|..++..|..++. .+..-+..++.+|.
T Consensus        62 s~l~kel~~l~~~~~~el~~y~~~l~~qL~   91 (307)
T 2l7b_A           62 SQVTQELRALMDETMKELKAYKSELEEQLT   91 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            455554444433322 23333344555543

>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}

Probab=95.30  E-value=2.2  Score=41.03  Aligned_cols=30  Identities=17%  Similarity=0.135  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGT   78 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~   78 (503)
                      ..+++++..++..+.+|..+.......+..
T Consensus        36 e~~e~rF~~le~~~~kL~k~~k~y~~ai~~   65 (237)
T 4avm_A           36 EQSASNFYQQQAEGHKLYKDLKNFLSAVKV   65 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555554444444433

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=95.29  E-value=0.11  Score=43.94  Aligned_cols=33  Identities=21%  Similarity=0.226  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      .++..++.+|+.|..++..|..+++.|+.+|.+
T Consensus        12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~   44 (100)
T 1go4_E           12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER   44 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666666666666666666666655544

>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}

Probab=95.28  E-value=2.4  Score=41.54  Aligned_cols=46  Identities=15%  Similarity=0.162  Sum_probs=33.1

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       186 ~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      .+|..+-++++.+--+...+...-+.-.+|..|+..|+..|..+..
T Consensus       190 ~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~~~l~~~l~~~~~  235 (253)
T 2d1l_A          190 AVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISEDLKS  235 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4555666677777777777776666666777788888888877655

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=95.27  E-value=0.2  Score=40.93  Aligned_cols=14  Identities=14%  Similarity=0.439  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHH
Q 010712          107 QMRNLTEKIAKMEA  120 (503)
Q Consensus       107 el~eL~eki~kLEa  120 (503)
                      +++.++.+|..+++
T Consensus        27 ~~~~~q~~i~~lE~   40 (84)
T 1gk4_A           27 EAANYQDTIGRLQD   40 (84)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444444444

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=95.15  E-value=2.9  Score=41.65  Aligned_cols=15  Identities=0%  Similarity=0.062  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 010712           68 ENQRLAATHGTLRQE   82 (503)
Q Consensus        68 enqrLa~e~~~Lrqe   82 (503)
                      ++..+..+...++.+
T Consensus        38 el~~f~keRa~iE~e   52 (337)
T 2x3v_A           38 DLMSCVQERAKIEKA   52 (337)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444443

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=95.05  E-value=0.14  Score=40.90  Aligned_cols=55  Identities=16%  Similarity=0.280  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 010712           57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL  111 (503)
Q Consensus        57 ~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL  111 (503)
                      .+..+++.++.+|+.|+.++..|+++|+..+.+-..++.++..+...++.+|-+|
T Consensus         4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL   58 (72)
T 3cve_A            4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL   58 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4566788888889999988888888888888777777666655544444444333

>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1

Probab=95.05  E-value=0.068  Score=46.90  Aligned_cols=58  Identities=19%  Similarity=0.156  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       171 ~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      ..+...|++|..++..+..++..++........-...+++.+.....|+++.+++|++
T Consensus        64 eeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa~Ld~  121 (125)
T 2pms_C           64 EELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKK  121 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445444444444444332211000011233344444444455555555544

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=95.02  E-value=0.056  Score=51.93  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712          103 ERELQMRNLTEKIAKMEAELKT  124 (503)
Q Consensus       103 e~E~el~eL~eki~kLEaEL~~  124 (503)
                      ++-.+++++...|..+...+.+
T Consensus        44 ef~~~ve~i~~~i~~i~~~v~e   65 (279)
T 3c98_B           44 EFFEQVEEIRGFIDKIAENVEE   65 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444443333

>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B

Probab=95.00  E-value=0.51  Score=43.62  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      .|+..-..++.+..+......+.+.|-++...+.++|+..+..|
T Consensus        11 ~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~Ai   54 (170)
T 3l4q_C           11 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAI   54 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444333

>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B

Probab=94.98  E-value=1.7  Score=40.07  Aligned_cols=109  Identities=11%  Similarity=0.079  Sum_probs=52.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hh--hhhHHHHHHHHHHHHHHHHHHhhH
Q 010712          125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT-----------DV--QQIPALLSELESLRQEYHHCRGTY  191 (503)
Q Consensus       125 le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~-----------el--qqi~~l~~EIe~L~qELq~lR~el  191 (503)
                      .+.+-.+......|++-.+..+......+...+.++.-...           +-  .++..+..-.+.|+.-|..++...
T Consensus        33 yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk  112 (170)
T 3l4q_C           33 YDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESR  112 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555532111           00  012223333344444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       192 e~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      +.+...+........+++.++.++.-+|..|+..-+..-..|
T Consensus       113 ~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL  154 (170)
T 3l4q_C          113 TKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWL  154 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            444444444455555666677777777766666655544333

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1

Probab=94.91  E-value=0.49  Score=51.43  Aligned_cols=25  Identities=12%  Similarity=0.187  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAA   74 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~   74 (503)
                      .++++++.+...++.++.+++.|+.
T Consensus         6 ~i~~~~~~l~~~~q~~e~~~k~Le~   30 (575)
T 1bf5_A            6 ELDSKVRNVKDKVMCIEHEIKSLED   30 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666666655554

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=94.89  E-value=1.2  Score=44.07  Aligned_cols=32  Identities=13%  Similarity=0.056  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          199 NDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       199 ~el~eqlqemEk~L~sm~rEIekLraELekle  230 (503)
                      ..+.++.+.+++.|......|+.|......+-
T Consensus       153 ~~LLkkh~~le~~l~~~~~~i~~L~~~a~~l~  184 (283)
T 3pe0_A          153 EDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVV  184 (283)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34445556666777777777777777766653

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=94.88  E-value=0.7  Score=47.75  Aligned_cols=44  Identities=16%  Similarity=0.238  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG   95 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~   95 (503)
                      -.++...+.+.+....+..+|.++...+.++|+..++-++...+
T Consensus       125 ~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~  168 (373)
T 3hhm_B          125 GKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNE  168 (373)
T ss_dssp             GC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            33444445555555555555666555555555554444444333

>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}

Probab=94.88  E-value=1.4  Score=38.73  Aligned_cols=43  Identities=14%  Similarity=0.127  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI  213 (503)
Q Consensus       171 ~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~  213 (503)
                      ..|...|...+.++..++..++..+....+...+++.+++-++
T Consensus        77 ~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~e  119 (150)
T 3ajw_A           77 QTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQD  119 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555556666666666655555555555555554443

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C

Probab=94.87  E-value=0.27  Score=51.37  Aligned_cols=36  Identities=11%  Similarity=0.159  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      +.....++.+|+..+.+....|.+|+..|..++...
T Consensus       100 ~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~  135 (411)
T 3ghg_C          100 ILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC  135 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333344444455555555566666666666555443

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=94.87  E-value=0.31  Score=48.00  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010712           53 QKIASQHVEMQKLATENQRL   72 (503)
Q Consensus        53 qeIe~~~~EIq~Le~enqrL   72 (503)
                      ++++.....|..+.....+|
T Consensus        35 ~~v~~I~~~I~~I~~~v~~l   54 (267)
T 1dn1_B           35 EQVEEIRGFIDKIAENVEEV   54 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444333333

>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}

Probab=94.85  E-value=0.068  Score=46.86  Aligned_cols=90  Identities=11%  Similarity=0.191  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010712          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI-PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM  208 (503)
Q Consensus       130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi-~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqem  208 (503)
                      .||++.+..|......++.|+.+...+..++..+..++..+ ..+..+++.|+-+.+.++.+|+-++....+.+..+..+
T Consensus         9 ~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqL   88 (130)
T 3cl3_D            9 GELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQL   88 (130)
T ss_dssp             ------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444443333333221 11233344444444444444444444444434333333


Q ss_pred             HHHHHHHHHHH
Q 010712          209 EKNYITMATEV  219 (503)
Q Consensus       209 Ek~L~sm~rEI  219 (503)
                      ......+..|.
T Consensus        89 Q~AY~~LfqeY   99 (130)
T 3cl3_D           89 QVAYHQLFQEY   99 (130)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=94.83  E-value=0.48  Score=39.08  Aligned_cols=37  Identities=14%  Similarity=0.074  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk  164 (503)
                      +..++..++..+.+....+.+|+.+...|..+...|.
T Consensus        19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~   55 (89)
T 3bas_A           19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLF   55 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555555555555555544444433

>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}

Probab=94.82  E-value=2.7  Score=44.03  Aligned_cols=58  Identities=7%  Similarity=0.041  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010712           65 LATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK  123 (503)
Q Consensus        65 Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~  123 (503)
                      +..++..|+.+++.+-+.|..-=.....+.... ....+.+.-++.|+....+|..-+.
T Consensus       195 ll~el~~le~elA~~L~SLT~HyDqC~~l~~~~-~s~~e~~elleVv~~Da~EL~~V~~  252 (413)
T 4hpq_C          195 FTNEADQLEQELADFLKSFTDHFDKCSALSSRS-VSPEDAQNLFEIVERDDKDLAAINS  252 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-CCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CChHhHHHHHHHHHcchhhHHHHHH
Confidence            344444455444444333333322333332211 1222344444444444444444333

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A

Probab=94.82  E-value=0.16  Score=55.44  Aligned_cols=26  Identities=15%  Similarity=0.293  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAA   74 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~   74 (503)
                      ..+|++++.+..+++.++.+++.|+.
T Consensus        16 ~ei~~~v~~lr~~~q~~e~~ik~Le~   41 (596)
T 1bg1_A           16 QMLEQHLQDVRKRVQDLEQKMKVVEN   41 (596)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666655555543

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}

Probab=94.79  E-value=4.4  Score=41.89  Aligned_cols=63  Identities=11%  Similarity=-0.021  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHL---------------ESLQVMEKNYITMATEVEKLRAELMNAPNVDRR  235 (503)
Q Consensus       173 l~~EIe~L~qELq~lR~ele~ekk~~~el~---------------eqlqemEk~L~sm~rEIekLraELekle~el~~  235 (503)
                      ++.+|.++++++...+.+++.+++.+....               ..++++...++.+.-.-.+|.++.+.++..+..
T Consensus       314 ~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~  391 (406)
T 4dyl_A          314 VTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEH  391 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            344455555555555555555555443321               123344444445555556666666666665643

>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C

Probab=94.79  E-value=0.43  Score=44.98  Aligned_cols=6  Identities=17%  Similarity=0.241  Sum_probs=2.3

Q ss_pred             HHHHHH
Q 010712           62 MQKLAT   67 (503)
Q Consensus        62 Iq~Le~   67 (503)
                      ++.|..
T Consensus        43 L~~LL~   48 (192)
T 2p22_C           43 IIDLIQ   48 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            333333

>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A

Probab=94.75  E-value=3.2  Score=40.06  Aligned_cols=57  Identities=9%  Similarity=-0.026  Sum_probs=26.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       169 qi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      +..++...|..+...++.+....+.++...   --+..++.+....+......|+.++..
T Consensus       166 ~~e~ie~dL~~~e~~i~~l~~~a~~L~~~~---y~~a~~i~~r~~~l~~~w~~L~~~~~~  222 (235)
T 2odv_A          166 RAGEVERDLDKADSMIRLLFNDVQTLKDGR---HPQGEQMYRRVYRLHKRLVAIRTEYNL  222 (235)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555444444444333332111   112344444555556666666665544

>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1

Probab=94.73  E-value=4.6  Score=41.79  Aligned_cols=19  Identities=26%  Similarity=0.476  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010712           75 THGTLRQELAAAQHELQIL   93 (503)
Q Consensus        75 e~~~LrqeLa~lq~EL~~L   93 (503)
                      .|..++.+|......+..+
T Consensus       173 kh~~~~~~l~~~~~~v~~l  191 (476)
T 1hci_A          173 KHEAFESDLAAHQDRVEQI  191 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHH
Confidence            3344444444444433333

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=94.73  E-value=0.22  Score=41.62  Aligned_cols=34  Identities=15%  Similarity=0.289  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA  163 (503)
Q Consensus       130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrl  163 (503)
                      .+|..++.+|..+..++..|+.+++.|..++.++
T Consensus        56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~   89 (93)
T 3s4r_A           56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL   89 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444433

>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}

Probab=94.72  E-value=3.2  Score=41.40  Aligned_cols=15  Identities=33%  Similarity=0.297  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHh
Q 010712          175 SELESLRQEYHHCRG  189 (503)
Q Consensus       175 ~EIe~L~qELq~lR~  189 (503)
                      +.|+.|+.|++.+..
T Consensus       224 ~rle~L~~ere~~~e  238 (302)
T 3ibp_A          224 SRIESLHAEREVLSE  238 (302)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            346666666555543

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=94.66  E-value=0.68  Score=37.73  Aligned_cols=50  Identities=16%  Similarity=0.235  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      .+...|..+..++.++|.+++       ....+.+++-+-...+..||..-+.-|+-
T Consensus        30 ~~q~~i~~lE~eL~~~r~e~~-------~q~~EYq~LlnvK~~Ld~EIatYRkLLEG   79 (84)
T 1gk4_A           30 NYQDTIGRLQDEIQNMKEEMA-------RHLREYQDLLNVKMALDIEIATYRKLLEG   79 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence            344445555555555555543       33444455555666777888887777764

>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C

Probab=94.63  E-value=1.6  Score=40.98  Aligned_cols=8  Identities=25%  Similarity=0.276  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010712          180 LRQEYHHC  187 (503)
Q Consensus       180 L~qELq~l  187 (503)
                      ...|.+.+
T Consensus       140 ~eeeS~~l  147 (192)
T 2p22_C          140 LDEESSQL  147 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C

Probab=94.53  E-value=0.5  Score=49.42  Aligned_cols=50  Identities=10%  Similarity=0.088  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       178 e~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe  227 (503)
                      .++..|+.+++..+......+..|+..+......|..|+..|..|.....
T Consensus        87 kkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~  136 (411)
T 3ghg_C           87 RKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ  136 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33445555555555555555555555555566666666666666665543

>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1

Probab=94.50  E-value=3.5  Score=39.40  Aligned_cols=7  Identities=29%  Similarity=0.354  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 010712          139 AQNLVVA  145 (503)
Q Consensus       139 LqqL~~e  145 (503)
                      +.+|-.+
T Consensus       110 VRkLA~~  116 (227)
T 1qu7_A          110 VRNLAQR  116 (227)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=94.49  E-value=0.23  Score=40.25  Aligned_cols=10  Identities=10%  Similarity=0.136  Sum_probs=3.7

Q ss_pred             HHHHHHHHHh
Q 010712          219 VEKLRAELMN  228 (503)
Q Consensus       219 IekLraELek  228 (503)
                      +......|+.
T Consensus        64 l~~a~~kLee   73 (81)
T 1ic2_A           64 LKDAQEKLEL   73 (81)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1

Probab=94.42  E-value=3.5  Score=39.13  Aligned_cols=15  Identities=0%  Similarity=0.193  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHH
Q 010712          106 LQMRNLTEKIAKMEA  120 (503)
Q Consensus       106 ~el~eL~eki~kLEa  120 (503)
                      .++.+|..+...|..
T Consensus        94 ~r~~~l~~~W~~L~~  108 (250)
T 1quu_A           94 DRCQKICDQWDRLGT  108 (250)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444433

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=94.39  E-value=3.5  Score=38.92  Aligned_cols=33  Identities=9%  Similarity=0.025  Sum_probs=24.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLR   80 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lr   80 (503)
                      -..+++++..+...+.+|..+...+...+..+.
T Consensus        39 fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~   71 (244)
T 1uru_A           39 FDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQ   71 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366788888888888888888877776665553

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=94.39  E-value=0.57  Score=49.76  Aligned_cols=21  Identities=19%  Similarity=0.349  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 010712           54 KIASQHVEMQKLATENQRLAA   74 (503)
Q Consensus        54 eIe~~~~EIq~Le~enqrLa~   74 (503)
                      +|...+.|+.++...|+.+.+
T Consensus        10 ~la~yq~elarvqkana~aka   30 (497)
T 3iox_A           10 KLTAYQTELARVQKANADAKA   30 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444433333

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=94.32  E-value=0.85  Score=47.12  Aligned_cols=32  Identities=9%  Similarity=0.161  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +....+...+++++|.++.-++..|+..-++.
T Consensus       228 ~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~  259 (373)
T 3hhm_B          228 LKKQAAEYREIDKRMNSIKPDLIQLRKTRDQY  259 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence            33334444556666666666666666554443

>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}

Probab=94.31  E-value=6  Score=41.35  Aligned_cols=10  Identities=30%  Similarity=0.421  Sum_probs=4.9

Q ss_pred             HHHHHHHHHH
Q 010712           74 ATHGTLRQEL   83 (503)
Q Consensus        74 ~e~~~LrqeL   83 (503)
                      .++..|+..+
T Consensus       168 ~~L~~L~~~~  177 (413)
T 4hpq_C          168 SRMKGLRDEF  177 (413)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            3445555544

>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*

Probab=94.31  E-value=0.38  Score=46.68  Aligned_cols=6  Identities=0%  Similarity=-0.385  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 010712           54 KIASQH   59 (503)
Q Consensus        54 eIe~~~   59 (503)
                      .+....
T Consensus        14 ~~~~Y~   19 (243)
T 2a01_A           14 LATVYV   19 (243)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1

Probab=94.30  E-value=2.7  Score=45.72  Aligned_cols=23  Identities=9%  Similarity=0.097  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHH
Q 010712          171 PALLSELESLRQEYHHCRGTYEY  193 (503)
Q Consensus       171 ~~l~~EIe~L~qELq~lR~ele~  193 (503)
                      +.++.-.+.|-.-+-++|+.|+.
T Consensus       122 d~lQ~w~e~lae~l~q~rqql~~  144 (575)
T 1bf5_A          122 DQLQNWFTIVAESLQQVRQQLKK  144 (575)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444445555544443

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=94.28  E-value=0.3  Score=39.09  Aligned_cols=14  Identities=14%  Similarity=-0.009  Sum_probs=3.1

Q ss_pred             HHHHHHHHHHHHHH
Q 010712          198 YNDHLESLQVMEKN  211 (503)
Q Consensus       198 ~~el~eqlqemEk~  211 (503)
                      ...+..+++++|++
T Consensus        60 ~~r~~~ri~elEeE   73 (77)
T 2w83_C           60 KLKLEEKNRELEEE   73 (77)
T ss_dssp             HHHHHHHC------
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333444444443

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=94.23  E-value=0.32  Score=39.32  Aligned_cols=59  Identities=15%  Similarity=0.116  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      ..+...+.||+.+++.-+.+++-...+..-+..|+.+...+.++|+.|+...+.|...+
T Consensus        18 E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l   76 (78)
T 3iv1_A           18 EEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555556666666655556655666666666666677777777777777766665543

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=94.21  E-value=1.2  Score=38.89  Aligned_cols=39  Identities=23%  Similarity=0.157  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       191 le~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      ++.++++++.+.+.+..+++.+..+...+..+..+|.++
T Consensus        90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~  128 (133)
T 1fxk_C           90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL  128 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444445555555555555555555544443

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A

Probab=94.17  E-value=8.1  Score=42.92  Aligned_cols=15  Identities=13%  Similarity=0.408  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHH
Q 010712          107 QMRNLTEKIAKMEAE  121 (503)
Q Consensus       107 el~eL~eki~kLEaE  121 (503)
                      +|+.+.+++..|+.+
T Consensus       557 ~L~~~l~~l~~l~~~  571 (704)
T 2xs1_A          557 VLKSLLSNLDEVKKE  571 (704)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444444433

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=94.15  E-value=0.2  Score=42.43  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Q 010712          208 MEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       208 mEk~L~sm~rEIekLraELekle  230 (503)
                      .++.+..|..|+++|+..|.+++
T Consensus        73 ~~~~~e~Lq~E~erLr~~v~~lE   95 (100)
T 1go4_E           73 LREDHSQLQAECERLRGLLRAME   95 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455556666666666666554

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=94.09  E-value=0.79  Score=37.77  Aligned_cols=45  Identities=13%  Similarity=0.150  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL   93 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L   93 (503)
                      ...+.++.....++..|...+.+.......|......+.++...|
T Consensus        10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L   54 (89)
T 3bas_A           10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL   54 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555665555555555555555544444444444444444443

>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}

Probab=94.02  E-value=1.4  Score=40.43  Aligned_cols=22  Identities=14%  Similarity=0.238  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712          141 NLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       141 qL~~erqeLe~qiq~L~~ELqr  162 (503)
                      .+...+.++..+++.+..+|..
T Consensus        91 ~~~e~l~~a~~~l~d~~~~L~~  112 (175)
T 4abx_A           91 QLQNELRAALESVQAIAGELRD  112 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444433

>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}

Probab=94.01  E-value=2.9  Score=36.59  Aligned_cols=49  Identities=8%  Similarity=-0.003  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      .|+.-|+....+......++.+....+.....+|..+..........+.
T Consensus         9 ~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~   57 (150)
T 3ajw_A            9 ALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLN   57 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666666666666666666666666666655555443

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=93.95  E-value=0.17  Score=37.77  Aligned_cols=43  Identities=28%  Similarity=0.353  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILH   94 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~   94 (503)
                      ++++..+..++..|..+|.+|.+.+...+++|..++.+|+.|.
T Consensus         8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La   50 (51)
T 3m91_A            8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG   50 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7888888999999999999999999999999999999888763

>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*

Probab=93.94  E-value=0.43  Score=50.41  Aligned_cols=29  Identities=14%  Similarity=0.281  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          202 LESLQVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       202 ~eqlqemEk~L~sm~rEIekLraELekle  230 (503)
                      ...|+.|...++.+.++|++|+..|..++
T Consensus       162 ~~~i~~l~~~~~~~~~~i~~l~~~~~~~~  190 (461)
T 3ghg_B          162 PTNLRVLRSILENLRSKIQKLESDVSAQM  190 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34455555555555666666666655443

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=93.92  E-value=0.21  Score=39.69  Aligned_cols=34  Identities=15%  Similarity=0.055  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          200 DHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       200 el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      ...+.++++++.|.....+|.+|+.+|+|++..+
T Consensus        37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl   70 (72)
T 3nmd_A           37 QRDALIDELELELDQKDELIQMLQNELDKYRSVI   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            3344566777777778888888888888887644

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=93.92  E-value=0.38  Score=39.45  Aligned_cols=49  Identities=16%  Similarity=0.176  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       173 l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      +...|..+..++.++|.++       .....+.+++-+-...+..||..-+.-|+-
T Consensus        33 ~q~~i~~lE~el~~~r~e~-------~~ql~EYq~LlnvK~~Le~EIatYRkLLEG   81 (86)
T 1x8y_A           33 SRRLLAEKEREMAEMRARM-------QQQLDEYQELLDIKLALDMEIHAYRKLLEG   81 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence            3334444445555544443       333444455555666777777777777664

>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}

Probab=93.90  E-value=1.4  Score=40.22  Aligned_cols=20  Identities=10%  Similarity=0.210  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010712           74 ATHGTLRQELAAAQHELQIL   93 (503)
Q Consensus        74 ~e~~~LrqeLa~lq~EL~~L   93 (503)
                      ..|..++.+|...+..+..+
T Consensus        44 ~~H~~~~~ei~~~~~~~~~l   63 (185)
T 3lbx_B           44 KYHQGINAEIETRSKNFSAC   63 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHH
Confidence            34444444444444333333

>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A

Probab=93.87  E-value=2.5  Score=39.22  Aligned_cols=20  Identities=20%  Similarity=0.177  Sum_probs=9.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHh
Q 010712          170 IPALLSELESLRQEYHHCRG  189 (503)
Q Consensus       170 i~~l~~EIe~L~qELq~lR~  189 (503)
                      ...+..+|..++..++.+..
T Consensus       149 h~~~e~dL~~~~~~v~~l~~  168 (218)
T 3edu_A          149 HTAFERELHLLGVQVQQFQD  168 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444443

>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}

Probab=93.78  E-value=3.5  Score=43.73  Aligned_cols=13  Identities=15%  Similarity=0.166  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVE   61 (503)
Q Consensus        49 ~~LEqeIe~~~~E   61 (503)
                      ..+..+|..+++|
T Consensus        93 ~~~~~Kl~eLE~e  105 (526)
T 3iyk_A           93 RGIQAKLKELEDE  105 (526)
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444443

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=93.75  E-value=0.63  Score=49.97  Aligned_cols=7  Identities=14%  Similarity=0.458  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 010712          220 EKLRAEL  226 (503)
Q Consensus       220 ekLraEL  226 (503)
                      .+++++|
T Consensus       140 ~~~~~~l  146 (501)
T 1wle_A          140 AQLEEQF  146 (501)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*

Probab=93.74  E-value=1  Score=47.62  Aligned_cols=18  Identities=6%  Similarity=0.119  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010712          207 VMEKNYITMATEVEKLRA  224 (503)
Q Consensus       207 emEk~L~sm~rEIekLra  224 (503)
                      .+..+++.|+..|..++.
T Consensus       174 ~~~~~i~~l~~~~~~~~~  191 (461)
T 3ghg_B          174 NLRSKIQKLESDVSAQME  191 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            333334444444444433

>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}

Probab=93.66  E-value=3.6  Score=36.48  Aligned_cols=32  Identities=19%  Similarity=0.141  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          133 QKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (503)
Q Consensus       133 eqLraELqqL~~erqeLe~qiq~L~~ELqrlk  164 (503)
                      +.++.++..|..+...+...|..|..++...+
T Consensus        57 ~~L~~dI~dLd~~v~l~~RdIgsL~ddVa~Nq   88 (157)
T 2qih_A           57 QLHDKKITNLGILHSMVARAVGNNTQGVATNK   88 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhhcchhhHHHhhH
Confidence            33334444444433344444444444443333

>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1

Probab=93.66  E-value=0.6  Score=40.93  Aligned_cols=13  Identities=23%  Similarity=0.337  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHH
Q 010712          174 LSELESLRQEYHH  186 (503)
Q Consensus       174 ~~EIe~L~qELq~  186 (503)
                      +.|++..+.+++.
T Consensus       109 kAEleKtqa~Ld~  121 (125)
T 2pms_C          109 KAELEKTEADLKK  121 (125)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444443

>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}

Probab=93.64  E-value=4.3  Score=37.78  Aligned_cols=22  Identities=9%  Similarity=0.196  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712           62 MQKLATENQRLAATHGTLRQEL   83 (503)
Q Consensus        62 Iq~Le~enqrLa~e~~~LrqeL   83 (503)
                      ++.|..+.+.|..++......+
T Consensus        40 ve~llkkH~~le~ei~~~~~~v   61 (210)
T 3pdy_A           40 VEAQLGSHRGLHQSIEEFRAKI   61 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444433333

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=93.56  E-value=1.3  Score=43.16  Aligned_cols=10  Identities=30%  Similarity=0.418  Sum_probs=4.1

Q ss_pred             HHHHHHHHhc
Q 010712          220 EKLRAELMNA  229 (503)
Q Consensus       220 ekLraELekl  229 (503)
                      +.++..|+++
T Consensus       253 ~~~~~~i~~i  262 (290)
T 3i2w_A          253 EEFSHTINNA  262 (290)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhc
Confidence            3344444443

>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}

Probab=93.48  E-value=4  Score=38.70  Aligned_cols=13  Identities=8%  Similarity=0.281  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHH
Q 010712          127 PVKLEFQKSKTEA  139 (503)
Q Consensus       127 ~Lk~ELeqLraEL  139 (503)
                      .|.+++++++..|
T Consensus        84 ~l~kd~ee~r~~l   96 (216)
T 2lem_A           84 EMNKDLEEVKQKV   96 (216)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHhccHHHHHHhh
Confidence            3444555555543

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=93.40  E-value=7.6  Score=39.46  Aligned_cols=45  Identities=16%  Similarity=0.133  Sum_probs=24.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI   92 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~   92 (503)
                      +..+|++++.++..|.+|....+++.....++..-.....+.|..
T Consensus        23 l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~   67 (385)
T 2q13_A           23 LGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKE   67 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355677777777777766666655555444443333333333333

>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}

Probab=93.39  E-value=4  Score=40.97  Aligned_cols=17  Identities=6%  Similarity=0.124  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHhcccc
Q 010712          216 ATEVEKLRAELMNAPNV  232 (503)
Q Consensus       216 ~rEIekLraELekle~e  232 (503)
                      ...++.|+..|+-+-..
T Consensus       263 ~~~~eeLr~~l~P~~e~  279 (307)
T 2l7b_A          263 EAAQARLKSRFEPLAED  279 (307)
T ss_dssp             HHHHHHHHHHHTTCSCH
T ss_pred             HhHHHHHHHHhhhHHHH
Confidence            34445555555444333

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=93.29  E-value=1.3  Score=46.99  Aligned_cols=44  Identities=23%  Similarity=0.154  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           81 QELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT  124 (503)
Q Consensus        81 qeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~  124 (503)
                      .+|+..+.||.++++.=+.++++.|..+.+++++-..+++|.+.
T Consensus         9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNea   52 (497)
T 3iox_A            9 AKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTA   52 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            34555555555555554445555555555555555555554443

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=93.24  E-value=0.47  Score=50.74  Aligned_cols=7  Identities=14%  Similarity=0.202  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 010712          220 EKLRAEL  226 (503)
Q Consensus       220 ekLraEL  226 (503)
                      .+++.+|
T Consensus        95 ~~~~~~~  101 (485)
T 3qne_A           95 AEADKNL  101 (485)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A

Probab=93.24  E-value=1.6  Score=39.05  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA  163 (503)
Q Consensus       130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrl  163 (503)
                      .+...-=.|...|.+++..+..++.+|..+|.++
T Consensus        52 ~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l   85 (140)
T 1xaw_A           52 RNFDTGLQEYKSLQSVLDEINKELSRLDKELDDY   85 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3333333444444444455555555555555443

>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}

Probab=93.12  E-value=3.2  Score=37.22  Aligned_cols=52  Identities=12%  Similarity=0.123  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHHHHHHHh
Q 010712          138 EAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIP-------ALLSELESLRQEYHHCRG  189 (503)
Q Consensus       138 ELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~-------~l~~EIe~L~qELq~lR~  189 (503)
                      .+++...........++.|+.+|++++.++.++.       .++.+++.++.|+..+++
T Consensus        63 ~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~  121 (158)
T 3tul_A           63 LYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKE  121 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444455555555555555555542       334444444444444333

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}

Probab=93.04  E-value=2.3  Score=47.23  Aligned_cols=23  Identities=9%  Similarity=0.097  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHH
Q 010712          171 PALLSELESLRQEYHHCRGTYEY  193 (503)
Q Consensus       171 ~~l~~EIe~L~qELq~lR~ele~  193 (503)
                      +.+..-.+.|-.-+-++|+.|+.
T Consensus       257 d~lQ~w~e~lae~l~q~rqql~~  279 (683)
T 1yvl_A          257 DQLQNWFTIVAESLQQVRQQLKK  279 (683)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444445555544443

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=93.02  E-value=0.26  Score=46.10  Aligned_cols=49  Identities=24%  Similarity=0.327  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      ..++++++..+..|+.|..+|..|..+++...+++..++.+|+.++.++
T Consensus         9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~   57 (190)
T 4emc_A            9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV   57 (190)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5678888888888888888888888777777777777776666665555

>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}

Probab=93.00  E-value=7.8  Score=38.41  Aligned_cols=17  Identities=29%  Similarity=0.380  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHhhhh
Q 010712           81 QELAAAQHELQILHGQI   97 (503)
Q Consensus        81 qeLa~lq~EL~~L~~qL   97 (503)
                      +.|..+..++++.++++
T Consensus       101 ~~L~~~~~e~ek~RK~~  117 (279)
T 3qwe_A          101 QPLAAKRTEIEKWRKEF  117 (279)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44455555555554444

>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A

Probab=93.00  E-value=1  Score=37.49  Aligned_cols=8  Identities=0%  Similarity=-0.005  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010712          109 RNLTEKIA  116 (503)
Q Consensus       109 ~eL~eki~  116 (503)
                      .+|..=|.
T Consensus        12 ~el~~WL~   19 (118)
T 3uul_A           12 EEVLTWLL   19 (118)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*

Probab=92.99  E-value=7.7  Score=39.50  Aligned_cols=27  Identities=15%  Similarity=0.036  Sum_probs=15.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAA   74 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~   74 (503)
                      +..++++++....-|..|.....+|..
T Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~l~~  189 (366)
T 3dyt_A          163 LVEIEQKCEAVGKFTKAMDDGVKELLT  189 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677777666555555555544443

>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}

Probab=92.97  E-value=0.041  Score=45.92  Aligned_cols=61  Identities=21%  Similarity=0.236  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          102 SERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       102 ae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      +.++..+.+|++.+..++.++..+.-|+++++-.+.+...-++.|..+..+++.|..+|..
T Consensus        34 ~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~L~~ql~~   94 (96)
T 3fx0_A           34 VAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQ   94 (96)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSCC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            3456678888888999998888888899999888888888888887777777666666544

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=92.96  E-value=7.1  Score=37.89  Aligned_cols=25  Identities=12%  Similarity=0.153  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           60 VEMQKLATENQRLAATHGTLRQELA   84 (503)
Q Consensus        60 ~EIq~Le~enqrLa~e~~~LrqeLa   84 (503)
                      ++|..+..++..++.+...--..|.
T Consensus        25 ~el~~f~keRa~iE~~Yak~L~kL~   49 (290)
T 3i2w_A           25 NDLQQLIQERADIEKGYAKSLRTWS   49 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566666665544333443

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A

Probab=92.94  E-value=14  Score=41.08  Aligned_cols=23  Identities=17%  Similarity=0.275  Sum_probs=12.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC
Q 010712            6 RIPPPHLRRPPPGPGMMHPDPFV   28 (503)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~   28 (503)
                      +||+...=-++++-.|+-+.||-
T Consensus       328 ~VP~~~~L~~i~~~~lvk~~~~~  350 (704)
T 2xs1_A          328 RVPDLKDLDPIGKATLVKSTPVN  350 (704)
T ss_dssp             CCCCGGGSCCCCCCCCCCCCCCC
T ss_pred             CCCCccccCCccCccccccCCCC
Confidence            45654222334455577776653

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A

Probab=92.88  E-value=3.1  Score=45.39  Aligned_cols=32  Identities=13%  Similarity=0.107  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQE   82 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrqe   82 (503)
                      ++++...+...++.|....+.++.++..|++.
T Consensus        11 ~~~k~~ei~~~v~~lr~~~q~~e~~ik~Le~~   42 (596)
T 1bg1_A           11 VTEKQQMLEQHLQDVRKRVQDLEQKMKVVENL   42 (596)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555666667776667777666666433

>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}

Probab=92.75  E-value=2.6  Score=46.91  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712           58 QHVEMQKLATENQRLAATHGTLR   80 (503)
Q Consensus        58 ~~~EIq~Le~enqrLa~e~~~Lr   80 (503)
                      ....|+.++.++..|+.+++.++
T Consensus        15 i~~~i~~~~~~r~~l~~~~~~~~   37 (706)
T 3fhn_A           15 INDRIKQVQNERNELASKLQNLK   37 (706)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555555555555554

>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}

Probab=92.69  E-value=1.8  Score=35.79  Aligned_cols=16  Identities=6%  Similarity=0.266  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLV  143 (503)
Q Consensus       128 Lk~ELeqLraELqqL~  143 (503)
                      +..+|...+..+..+.
T Consensus        48 l~~ei~~~~~~v~~~~   63 (119)
T 3uun_A           48 YMMDLTAHQGRVGNIL   63 (119)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHH
Confidence            3334433333333333

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=92.68  E-value=0.27  Score=49.54  Aligned_cols=21  Identities=19%  Similarity=0.192  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 010712          208 MEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       208 mEk~L~sm~rEIekLraELek  228 (503)
                      ++.++..++.+++.++..|+.
T Consensus       134 ~~~~l~~~~~~l~~a~~~l~~  154 (369)
T 4dk0_A          134 VQENIKQAEIEVNTAETNLGY  154 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            333344444444444444443

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=92.60  E-value=6.1  Score=36.20  Aligned_cols=9  Identities=0%  Similarity=0.283  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 010712          212 YITMATEVE  220 (503)
Q Consensus       212 L~sm~rEIe  220 (503)
                      +..+++-|.
T Consensus       171 I~~IE~sI~  179 (196)
T 1fio_A          171 LLKLEKSMA  179 (196)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1

Probab=92.56  E-value=6.2  Score=36.16  Aligned_cols=6  Identities=17%  Similarity=0.601  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 010712           79 LRQELA   84 (503)
Q Consensus        79 LrqeLa   84 (503)
                      ++.+|.
T Consensus        48 le~~i~   53 (216)
T 1u5p_A           48 LEADIS   53 (216)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=92.53  E-value=0.41  Score=43.00  Aligned_cols=29  Identities=17%  Similarity=0.044  Sum_probs=13.9

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           44 MMPPPEVMEQKIASQHVEMQKLATENQRL   72 (503)
Q Consensus        44 ~~p~p~~LEqeIe~~~~EIq~Le~enqrL   72 (503)
                      |.+.+..|.+.+..+..+++.|....+.|
T Consensus         7 ~~~~l~ql~~~~qql~~~~~~l~~~~~~L   35 (151)
T 2zdi_C            7 NNKELEKLAYEYQVLQAQAQILAQNLELL   35 (151)
T ss_dssp             STTHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555444444444444

>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A

Probab=92.47  E-value=6.6  Score=36.29  Aligned_cols=56  Identities=14%  Similarity=0.057  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle  230 (503)
                      .++=++..|-..++-.|-.+.+.+..-.-.+...-++...+.+|-=-+++.+.|+.
T Consensus       115 ~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQF~~ral~~Ki~  170 (174)
T 2p22_A          115 NQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRIT  170 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444433333222333444444455555544555555543

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=92.42  E-value=1.3  Score=35.84  Aligned_cols=37  Identities=16%  Similarity=0.248  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk  164 (503)
                      ++.....+..+|+......++|..+++.|+.++..++
T Consensus        36 vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq   72 (81)
T 1wt6_A           36 IRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444443

>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}

Probab=92.40  E-value=8  Score=41.06  Aligned_cols=13  Identities=23%  Similarity=0.294  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQ   63 (503)
Q Consensus        51 LEqeIe~~~~EIq   63 (503)
                      -|+.+.....||.
T Consensus        91 gE~~~~~Kl~eLE  103 (526)
T 3iyk_A           91 GERGIQAKLKELE  103 (526)
T ss_pred             hHHHHHHHHHHHH
Confidence            5555544444443

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=92.37  E-value=0.67  Score=37.10  Aligned_cols=34  Identities=18%  Similarity=0.100  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010712          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL  205 (503)
Q Consensus       172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eql  205 (503)
                      ++..|.+.|+.|+..+++....++..+.++.+++
T Consensus        41 ELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl   74 (77)
T 2w83_C           41 ELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL   74 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444433

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=92.27  E-value=0.69  Score=40.88  Aligned_cols=13  Identities=31%  Similarity=0.493  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHH
Q 010712          105 ELQMRNLTEKIAK  117 (503)
Q Consensus       105 E~el~eL~eki~k  117 (503)
                      +..|.+|.+-|..
T Consensus        80 e~dLeDLe~sI~i   92 (130)
T 4dnd_A           80 EWDLEDLEETIGI   92 (130)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444444333

>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A

Probab=92.23  E-value=2.1  Score=35.46  Aligned_cols=15  Identities=7%  Similarity=0.262  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNL  142 (503)
Q Consensus       128 Lk~ELeqLraELqqL  142 (503)
                      +..+|...+..+..+
T Consensus        48 l~~ei~~~~~~v~~v   62 (118)
T 3uul_A           48 FMMELSAHQSSVGSV   62 (118)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333443333333333

>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A

Probab=92.20  E-value=0.79  Score=42.50  Aligned_cols=17  Identities=6%  Similarity=-0.007  Sum_probs=7.0

Q ss_pred             ChHHHHHHHHHHHHHHH
Q 010712           47 PPEVMEQKIASQHVEMQ   63 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq   63 (503)
                      +.+.+-..+-.....+.
T Consensus         8 ~~e~v~~~~w~Y~~~l~   24 (185)
T 3r2p_A            8 PWDRVKDLATVYVDVLK   24 (185)
T ss_dssp             TTHHHHHHHHHHTHHHH
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            33444444444444333

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=92.12  E-value=1.2  Score=36.12  Aligned_cols=24  Identities=17%  Similarity=0.374  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          203 ESLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       203 eqlqemEk~L~sm~rEIekLraEL  226 (503)
                      +++..+...|..-..||+.|..+|
T Consensus        54 ~El~~Lq~qLe~kd~ei~rL~~~l   77 (81)
T 3qh9_A           54 AEVAQLQEQVALKDAEIERLHSQL   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHH
Confidence            344444444444444444444443

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=91.99  E-value=2.2  Score=34.44  Aligned_cols=29  Identities=24%  Similarity=0.340  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQL  156 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L  156 (503)
                      ++.++.+.++||+.|+...++|..=.+.|
T Consensus        16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL   44 (78)
T 3iv1_A           16 MKEEMDRAQAELNALKRTEEDLKKGHQKL   44 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhhHHH
Confidence            44444455555555554444444433333

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=91.94  E-value=1.5  Score=34.70  Aligned_cols=19  Identities=11%  Similarity=0.069  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHhhHH
Q 010712          174 LSELESLRQEYHHCRGTYE  192 (503)
Q Consensus       174 ~~EIe~L~qELq~lR~ele  192 (503)
                      +.||.+|+..++.|+.+|+
T Consensus        55 k~Ei~elrr~iq~L~~el~   73 (77)
T 3trt_A           55 KQESTEYRRQVQSLTMEVD   73 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444433

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=91.79  E-value=0.41  Score=51.20  Aligned_cols=24  Identities=0%  Similarity=-0.132  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          201 HLESLQVMEKNYITMATEVEKLRA  224 (503)
Q Consensus       201 l~eqlqemEk~L~sm~rEIekLra  224 (503)
                      +.++++++++++..++.++..+-.
T Consensus        83 l~~~i~~le~~~~~~~~~~~~~l~  106 (485)
T 3qne_A           83 LSNEKKEIIEKEAEADKNLRSKIN  106 (485)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555554433

>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*

Probab=91.66  E-value=3.4  Score=42.47  Aligned_cols=13  Identities=23%  Similarity=0.480  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHH
Q 010712          175 SELESLRQEYHHC  187 (503)
Q Consensus       175 ~EIe~L~qELq~l  187 (503)
                      .||..++.+++.+
T Consensus       101 ~e~~~l~~~l~~l  113 (365)
T 1gqe_A          101 AELDALEEKLAQL  113 (365)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444444433

>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}

Probab=91.63  E-value=1.5  Score=36.95  Aligned_cols=76  Identities=17%  Similarity=0.193  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010712           52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE  131 (503)
Q Consensus        52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~E  131 (503)
                      |++...+..+|..|..++++...+.+.|..-+....+     .-++... ...+.+|.++..+|+.|+.++.+++.+..|
T Consensus        14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~-----nP~~GD~-~s~~~~L~e~~~kid~L~~el~K~q~~L~e   87 (98)
T 2ke4_A           14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEK-----TPQMGDP-ASLEPQIAETLSNIERLKLEVQKYEAWLAE   87 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----CGGGCCG-GGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777777777777776666666655332222221     1112111 122556667777777777766666666555


Q ss_pred             HH
Q 010712          132 FQ  133 (503)
Q Consensus       132 Le  133 (503)
                      ++
T Consensus        88 ~e   89 (98)
T 2ke4_A           88 AE   89 (98)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=91.55  E-value=2  Score=36.12  Aligned_cols=26  Identities=4%  Similarity=0.184  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLR  223 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLr  223 (503)
                      .+.+..+..++..+++.+.+...+.+
T Consensus        66 keRL~~dF~~l~~~fQ~~qr~y~ek~   91 (97)
T 1hs7_A           66 NGKLSADFKNLKTKYQSLQQSYNQRK   91 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555554444433

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=91.48  E-value=20  Score=39.68  Aligned_cols=6  Identities=0%  Similarity=-0.086  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 010712           49 EVMEQK   54 (503)
Q Consensus        49 ~~LEqe   54 (503)
                      ..|++.
T Consensus       313 ~~L~~~  318 (695)
T 2j69_A          313 PKFMDS  318 (695)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}

Probab=91.48  E-value=14  Score=37.96  Aligned_cols=28  Identities=11%  Similarity=0.151  Sum_probs=17.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           47 PPEVMEQKIASQHVEMQKLATENQRLAA   74 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~   74 (503)
                      .+..++++++....-|..|.....+|..
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~  209 (386)
T 4akv_A          182 DLQDVEDRVDTFKAFSKKMDDSVLQLST  209 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777666666666655555544

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=91.48  E-value=1.2  Score=36.04  Aligned_cols=58  Identities=19%  Similarity=0.064  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      .+.|-+|+..||-.++.+......-+..++....++..+.+.++.-.++|+.+..++.
T Consensus        21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~   78 (81)
T 3qh9_A           21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            3445555555555554444444555556677777777777777777777777766653

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=91.45  E-value=1.1  Score=47.99  Aligned_cols=22  Identities=5%  Similarity=-0.041  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 010712          201 HLESLQVMEKNYITMATEVEKL  222 (503)
Q Consensus       201 l~eqlqemEk~L~sm~rEIekL  222 (503)
                      ++++++++++++..++.++..+
T Consensus       128 l~~~i~~l~~~~~~~~~~l~~~  149 (501)
T 1wle_A          128 IRKQLTLLYPKEAQLEEQFYLR  149 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444443

>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1

Probab=91.44  E-value=8.5  Score=36.28  Aligned_cols=64  Identities=14%  Similarity=0.250  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010712           76 HGTLRQELAAAQHELQILHGQIGG-----MKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEA  139 (503)
Q Consensus        76 ~~~LrqeLa~lq~EL~~L~~qL~~-----lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraEL  139 (503)
                      +......|..+..+-+.|=.+|..     +....+.-+..+.++...|+.|...++..+.++..++.-+
T Consensus        35 ~~~~qkkL~~LEkk~q~LY~qI~~~~~~~v~~~adqa~~nv~eRek~l~kEk~si~~s~kef~~~k~~i  103 (199)
T 2ap3_A           35 IKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHV  103 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444431     1112233333344444445555555555555544444433

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}

Probab=91.44  E-value=6.8  Score=42.71  Aligned_cols=49  Identities=6%  Similarity=-0.010  Sum_probs=23.4

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhccccc
Q 010712          185 HHCRGTYEYEKKFYNDHLESLQVMEKNYIT------MATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       185 q~lR~ele~ekk~~~el~eqlqemEk~L~s------m~rEIekLraELekle~el  233 (503)
                      +.+..-++.+-+.+-.+.++++.+++-...      +...+..|.+.+.++-+.|
T Consensus       146 D~lQ~w~e~lae~l~q~rqql~~l~~l~~~~~~~~~~~~~l~~l~~~~~~ll~~L  200 (585)
T 1y1u_A          146 DVLQSWCEKLAEIIWQNRQQIRRAEHLCQQLPIPGPVEEMLAEVNATITDIISAL  200 (585)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHHHHHHHHHHHH
Confidence            444444555555555555555555442222      2344455555555544443

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=91.40  E-value=0.49  Score=37.63  Aligned_cols=25  Identities=12%  Similarity=0.149  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKL  222 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekL  222 (503)
                      +.++.+++++.+..+..+..++.|+
T Consensus        42 I~eLEk~L~ekd~eI~~LqseLDKf   66 (72)
T 3nmd_A           42 IDELELELDQKDELIQMLQNELDKY   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333334444444444444443

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=91.34  E-value=0.37  Score=48.09  Aligned_cols=20  Identities=20%  Similarity=0.213  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHhccccc
Q 010712          214 TMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       214 sm~rEIekLraELekle~el  233 (503)
                      .++.+++.++++|+.++..+
T Consensus       132 ~~~a~l~~a~a~l~~a~~~l  151 (341)
T 3fpp_A          132 TIDAQIKRNQASLDTAKTNL  151 (341)
T ss_dssp             HHHHHHHHTHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            33444455555555555444

>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A

Probab=91.31  E-value=1.6  Score=39.30  Aligned_cols=15  Identities=7%  Similarity=-0.004  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHH
Q 010712          141 NLVVAREELIAKVHQ  155 (503)
Q Consensus       141 qL~~erqeLe~qiq~  155 (503)
                      +......++...|.+
T Consensus        60 ~F~~d~~el~~Wi~e   74 (161)
T 3lbx_A           60 VFKRDADDLGKWIME   74 (161)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333344444444443

>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}

Probab=91.31  E-value=3.4  Score=33.14  Aligned_cols=30  Identities=13%  Similarity=0.111  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          135 SKTEAQNLVVAREELIAKVHQLTQDLQRAH  164 (503)
Q Consensus       135 LraELqqL~~erqeLe~qiq~L~~ELqrlk  164 (503)
                      |+.-..++.....+|+..++.|...|..|.
T Consensus        14 l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~   43 (99)
T 3zbh_A           14 LRGVARQYNVESSNVTELIARLDQMSHTLQ   43 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444443

>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}

Probab=91.19  E-value=2.6  Score=35.90  Aligned_cols=53  Identities=17%  Similarity=0.191  Sum_probs=29.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 010712          124 TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE  176 (503)
Q Consensus       124 ~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E  176 (503)
                      .+..+.+||.+.+.++.+|..++.+|...++.|+.+-+..-..+..|+.+-++
T Consensus         5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe   57 (106)
T 4e61_A            5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT   57 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666666666666666666666666666655554444444444433333

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=91.15  E-value=1.1  Score=41.67  Aligned_cols=6  Identities=17%  Similarity=0.030  Sum_probs=2.3

Q ss_pred             cccccC
Q 010712          232 VDRRAD  237 (503)
Q Consensus       232 el~~~~  237 (503)
                      +++..|
T Consensus       139 em~KeG  144 (175)
T 3lay_A          139 AMAQAG  144 (175)
T ss_dssp             HHHHTT
T ss_pred             HHHHhC
Confidence            343333

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=91.05  E-value=0.92  Score=48.04  Aligned_cols=27  Identities=4%  Similarity=0.122  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          199 NDHLESLQVMEKNYITMATEVEKLRAE  225 (503)
Q Consensus       199 ~el~eqlqemEk~L~sm~rEIekLraE  225 (503)
                      .++.++++++++++..++.++..+-..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (455)
T 2dq0_A           79 REIVKRIGELENEVEELKKKIDYYLWR  105 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444455555555555555444333

>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}

Probab=91.04  E-value=12  Score=36.23  Aligned_cols=195  Identities=11%  Similarity=0.084  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 010712           33 PPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLT  112 (503)
Q Consensus        33 p~~~~~~~p~~~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~  112 (503)
                      ||-... .|..++++|..-+-.++.++..|...+.....+.+      +-|..+.......+..+.....+....++...
T Consensus        23 pps~~~-~~~~~~s~P~kk~~SleEIqkKLeAAEERRks~Ea------~~lk~laekrEhe~evlqKa~Een~~F~k~ae   95 (240)
T 4f61_I           23 PPSFDG-VPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEA------ELLKHLAEKREHEREVIQRAIEENNNWIKMAK   95 (240)
T ss_dssp             CCSSCS-SCCCC------CCCCHHHHHHHHHHHHHHHHHHHH------HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHH-HHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHH--HHHHHHHHHHH
Q 010712          113 EKI-AKMEAELKTAEPVKLE-FQKSKTEAQNLVVAREELIAKVHQLTQDL-QRAHTDVQQIPALLSE--LESLRQEYHHC  187 (503)
Q Consensus       113 eki-~kLEaEL~~le~Lk~E-LeqLraELqqL~~erqeLe~qiq~L~~EL-qrlk~elqqi~~l~~E--Ie~L~qELq~l  187 (503)
                      +++ .+|+......+..... ++.|+.....+...+..+...-.....++ ..++..+....+-+..  .+-|+.-.+..
T Consensus        96 EkL~~KME~~kEnReA~laal~erLkek~~~aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeErRk~qea~~Lk~Laekr  175 (240)
T 4f61_I           96 EKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKR  175 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccccc
Q 010712          188 RGTYEYEKKFYNDHLESLQVMEKNYI-TMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       188 R~ele~ekk~~~el~eqlqemEk~L~-sm~rEIekLraELekle~el~  234 (503)
                      ..+.+-+++.+.+...-.+.+++.+. .|+...+.-.+-+..+..+|.
T Consensus       176 EHe~eVlqka~e~n~~f~k~~eekl~~KmE~~kEnRea~~~a~~ErL~  223 (240)
T 4f61_I          176 EHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQ  223 (240)
T ss_dssp             HHHHHHTTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH

>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*

Probab=90.89  E-value=4.2  Score=41.79  Aligned_cols=12  Identities=8%  Similarity=0.360  Sum_probs=4.7

Q ss_pred             HHHHHHHHhhhh
Q 010712           86 AQHELQILHGQI   97 (503)
Q Consensus        86 lq~EL~~L~~qL   97 (503)
                      +..++..|...+
T Consensus        30 ~~~r~~el~~~~   41 (365)
T 1gqe_A           30 KKERLEEVNAEL   41 (365)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            333344443333

>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1

Probab=90.87  E-value=16  Score=37.58  Aligned_cols=11  Identities=9%  Similarity=-0.094  Sum_probs=4.1

Q ss_pred             ChHHHHHHHHH
Q 010712           47 PPEVMEQKIAS   57 (503)
Q Consensus        47 ~p~~LEqeIe~   57 (503)
                      .+...=+.|..
T Consensus       100 ~i~~~w~~L~~  110 (476)
T 1hci_A          100 DIAGAWQRLEQ  110 (476)
T ss_dssp             SHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=90.83  E-value=1.5  Score=39.27  Aligned_cols=12  Identities=42%  Similarity=0.249  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q 010712          138 EAQNLVVAREEL  149 (503)
Q Consensus       138 ELqqL~~erqeL  149 (503)
                      +++.+...++.|
T Consensus        24 ~~~~l~~~~~~L   35 (151)
T 2zdi_C           24 QAQILAQNLELL   35 (151)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A

Probab=90.82  E-value=20  Score=38.54  Aligned_cols=38  Identities=18%  Similarity=0.308  Sum_probs=20.3

Q ss_pred             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIAS-------QHVEMQKLATENQRLAATHGTLRQELAAA   86 (503)
Q Consensus        49 ~~LEqeIe~-------~~~EIq~Le~enqrLa~e~~~LrqeLa~l   86 (503)
                      ..||.++-.       ...-|..++..+..|......+..-.+.+
T Consensus       559 ~~ledk~~akgls~qe~nklikdfl~snkelvgk~~nfnkavaea  603 (876)
T 4dvy_P          559 RNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEA  603 (876)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHhcCCCHHHHHHHHHHHHhccHHHHHHHhhHHHHHHHh
Confidence            777777543       23334445555566655555555444443

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=90.81  E-value=0.31  Score=49.12  Aligned_cols=32  Identities=9%  Similarity=0.068  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          203 ESLQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       203 eqlqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      .++...+.++..++.+++.++.+|+.++..+.
T Consensus       122 ~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~  153 (369)
T 4dk0_A          122 ATLNNAKAEMDVVQENIKQAEIEVNTAETNLG  153 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34445556777888888888888888777664

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=90.74  E-value=2.1  Score=33.98  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          137 TEAQNLVVAREELIAKVHQLTQDLQ  161 (503)
Q Consensus       137 aELqqL~~erqeLe~qiq~L~~ELq  161 (503)
                      ..|+.+...-++|+.+|+.|+.+|+
T Consensus         7 ~kLq~~E~~N~~Le~~v~~le~~Le   31 (72)
T 3cve_A            7 MKLQEVEIRNKDLEGQLSEMEQRLE   31 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3344444444444444444444443

>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A

Probab=90.72  E-value=5.7  Score=32.06  Aligned_cols=30  Identities=17%  Similarity=0.253  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          136 KTEAQNLVVAREELIAKVHQLTQDLQRAHT  165 (503)
Q Consensus       136 raELqqL~~erqeLe~qiq~L~~ELqrlk~  165 (503)
                      +.-..++.....+|+..+..|...|..|..
T Consensus        14 ~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~   43 (98)
T 3gwk_C           14 RSSAQKYTAGSQQVTEVLNLLTQEQAVIDE   43 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            333333444444444444444444444443

>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A

Probab=90.62  E-value=3  Score=41.71  Aligned_cols=25  Identities=12%  Similarity=0.097  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           60 VEMQKLATENQRLAATHGTLRQELA   84 (503)
Q Consensus        60 ~EIq~Le~enqrLa~e~~~LrqeLa   84 (503)
                      ++|..+..++..++.+...--..|.
T Consensus        37 ~el~~f~keRa~iE~~Yak~L~kLa   61 (320)
T 3m3w_A           37 GDLVSCFQERARIEKAYAQQLADWA   61 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555566555544333333

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=90.53  E-value=0.25  Score=49.31  Aligned_cols=25  Identities=4%  Similarity=0.093  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          206 QVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       206 qemEk~L~sm~rEIekLraELekle  230 (503)
                      +.++.++..++.+++.++..|+.+.
T Consensus       131 ~~~~a~l~~a~a~l~~a~~~l~~~~  155 (341)
T 3fpp_A          131 GTIDAQIKRNQASLDTAKTNLDYTR  155 (341)
T ss_dssp             HHHHHHHHHTHHHHTTTTTTTTSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCE
Confidence            3344444555555666666666543

>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}

Probab=90.48  E-value=13  Score=35.64  Aligned_cols=35  Identities=6%  Similarity=0.142  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAA   85 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~   85 (503)
                      .+.+++.+....+.++....+|..++....+-+..
T Consensus        31 ~D~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~   65 (237)
T 4avm_A           31 KDERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKV   65 (237)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666677777777776666665554443

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=90.48  E-value=1.4  Score=36.14  Aligned_cols=15  Identities=27%  Similarity=0.390  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHH
Q 010712          108 MRNLTEKIAKMEAEL  122 (503)
Q Consensus       108 l~eL~eki~kLEaEL  122 (503)
                      +..|..++..++.+|
T Consensus        58 ~~~l~~~l~~~e~eL   72 (89)
T 2lw1_A           58 TQKVLADMAAAEQEL   72 (89)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444444433

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=90.46  E-value=0.96  Score=36.47  Aligned_cols=54  Identities=11%  Similarity=0.124  Sum_probs=39.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 010712           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM  100 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~l  100 (503)
                      ....||++|+.++.+|..++..+..|...+....++|+.++.++..|..++..+
T Consensus         8 ~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~   61 (78)
T 3efg_A            8 RDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV   61 (78)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            446788888888888888887777777777777777777777777777666543

>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0

Probab=90.42  E-value=3.2  Score=36.63  Aligned_cols=17  Identities=24%  Similarity=0.110  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010712          139 AQNLVVAREELIAKVHQ  155 (503)
Q Consensus       139 LqqL~~erqeLe~qiq~  155 (503)
                      +++......++...|.+
T Consensus        48 l~~F~~d~~el~~Wi~e   64 (149)
T 3f31_A           48 FQFFQRDAEELEKWIQE   64 (149)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333444444444444

>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1

Probab=90.34  E-value=0.86  Score=34.07  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHH
Q 010712          108 MRNLTEKIAKMEAELKT------AEPVKLEFQKSKTEAQNL  142 (503)
Q Consensus       108 l~eL~eki~kLEaEL~~------le~Lk~ELeqLraELqqL  142 (503)
                      ++.|.++++.|++.+..      ++.|+...++++..++.|
T Consensus         4 vkaleekvkaleekvkalggggrieelkkkweelkkkieel   44 (67)
T 1lq7_A            4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEEL   44 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHh
Confidence            34455566666655543      456666666666555443

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=90.24  E-value=4.4  Score=47.04  Aligned_cols=14  Identities=7%  Similarity=-0.069  Sum_probs=7.2

Q ss_pred             ChHHHHHHHHHHHH
Q 010712           47 PPEVMEQKIASQHV   60 (503)
Q Consensus        47 ~p~~LEqeIe~~~~   60 (503)
                      ....||+.......
T Consensus       750 ~l~~LE~~R~~~l~  763 (1010)
T 1g8x_A          750 QLARIEEAREQRLG  763 (1010)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHH
Confidence            34566665554443

>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}

Probab=90.24  E-value=3.1  Score=34.64  Aligned_cols=17  Identities=35%  Similarity=0.454  Sum_probs=7.0

Q ss_pred             hHHHHHHHHHHHHHHHH
Q 010712          170 IPALLSELESLRQEYHH  186 (503)
Q Consensus       170 i~~l~~EIe~L~qELq~  186 (503)
                      +.++..||..|.++|++
T Consensus        69 v~elqgEI~~Lnq~Lqd   85 (99)
T 3ni0_A           69 IKELENEVTKLNQELEN   85 (99)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444444433

>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A

Probab=90.14  E-value=12  Score=35.03  Aligned_cols=19  Identities=16%  Similarity=0.071  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 010712           78 TLRQELAAAQHELQILHGQ   96 (503)
Q Consensus        78 ~LrqeLa~lq~EL~~L~~q   96 (503)
                      .+.+.|..+...|..+...
T Consensus        53 ~~~~~l~~~~~~l~~~~~~   71 (258)
T 2yfa_A           53 NTLAKLDAFSKQQAYLATT   71 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444443

>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*

Probab=90.07  E-value=6.3  Score=33.54  Aligned_cols=17  Identities=18%  Similarity=0.343  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010712          107 QMRNLTEKIAKMEAELK  123 (503)
Q Consensus       107 el~eL~eki~kLEaEL~  123 (503)
                      +++++...|..++..+.
T Consensus        13 ~v~~I~~~i~~i~~~v~   29 (127)
T 1ez3_A           13 QVEEIRGFIDKIAENVE   29 (127)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33334444444433333

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=89.91  E-value=0.59  Score=48.76  Aligned_cols=55  Identities=15%  Similarity=0.083  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          179 SLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       179 ~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      .++.|+..++++++.++..+.+++.+++++.+.+...+.+..+|..+|.+++..+
T Consensus         7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI   61 (403)
T 4etp_A            7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI   61 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence            3333333333333334444444444444445555555555555555555554433

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A

Probab=89.91  E-value=1.2  Score=46.63  Aligned_cols=18  Identities=11%  Similarity=0.100  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 010712          211 NYITMATEVEKLRAELMN  228 (503)
Q Consensus       211 ~L~sm~rEIekLraELek  228 (503)
                      ++..++.++.+++.+|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~   96 (421)
T 1ses_A           79 EAKRLEEALREKEARLEA   96 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333334444444444443

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=89.79  E-value=2.4  Score=31.87  Aligned_cols=18  Identities=22%  Similarity=0.218  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010712          208 MEKNYITMATEVEKLRAE  225 (503)
Q Consensus       208 mEk~L~sm~rEIekLraE  225 (503)
                      +.+.+..+..+|.+++.+
T Consensus        38 ~~~~l~~~~~~I~~~k~q   55 (60)
T 3htk_A           38 IFEKLNTIRDEVIKKKNQ   55 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333334444444333

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A

Probab=89.78  E-value=1.3  Score=46.47  Aligned_cols=24  Identities=17%  Similarity=0.083  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          201 HLESLQVMEKNYITMATEVEKLRA  224 (503)
Q Consensus       201 l~eqlqemEk~L~sm~rEIekLra  224 (503)
                      +.++++++++++..++.++..+-.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~   99 (421)
T 1ses_A           76 LGEEAKRLEEALREKEARLEALLL   99 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555544444333

>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1

Probab=89.68  E-value=1.3  Score=37.09  Aligned_cols=25  Identities=24%  Similarity=0.329  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHH
Q 010712          111 LTEKIAKMEAELKTAEPVKLEFQKS  135 (503)
Q Consensus       111 L~eki~kLEaEL~~le~Lk~ELeqL  135 (503)
                      |+++|+.|+.++..++.+..+...|
T Consensus        52 L~~EI~~L~~eI~~LE~iqs~aK~L   76 (96)
T 1t3j_A           52 LEEEIARLSKEIDQLEKMQNNSKLL   76 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3333334444433333333333333

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=89.62  E-value=2.3  Score=35.83  Aligned_cols=15  Identities=20%  Similarity=0.534  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 010712          149 LIAKVHQLTQDLQRA  163 (503)
Q Consensus       149 Le~qiq~L~~ELqrl  163 (503)
                      +..++..-+.+|+++
T Consensus        83 ~~~klr~Yk~dL~~l   97 (102)
T 2qyw_A           83 MMSKLRNYRKDLAKL   97 (102)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*

Probab=89.56  E-value=1.5  Score=46.94  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 010712          206 QVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       206 qemEk~L~sm~rEIekLraELek  228 (503)
                      +++.+++..++.++.+++++|..
T Consensus       114 ~~l~~~i~~le~~~~~~~~~~~~  136 (484)
T 3lss_A          114 KDLSDQVAGLAKEAQQLEEERDK  136 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444443

>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}

Probab=89.54  E-value=1.3  Score=35.16  Aligned_cols=59  Identities=15%  Similarity=0.168  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHH
Q 010712          131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYE  192 (503)
Q Consensus       131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele  192 (503)
                      ++++++++|++|+....++...+-.|.++   |=.+.++|.++-++.=+.-+++..++++++
T Consensus         4 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~L~   62 (71)
T 2js5_A            4 GAEELKAKLKKLNAQATALKMDLHDLAED---LPTGWNRIMEVAEKTYEAYRQLDEFRKSTA   62 (71)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTSGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777777766666655   333445555555554444455555444443

>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1

Probab=89.53  E-value=1.3  Score=37.19  Aligned_cols=41  Identities=15%  Similarity=0.247  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010712          101 KSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQN  141 (503)
Q Consensus       101 kae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqq  141 (503)
                      ..+++.+|++|..+|..||.-......|+.+..-|..||..
T Consensus        49 ~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~   89 (96)
T 1t3j_A           49 QKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELEN   89 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            33444455555555555555544455555555444444443

>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}

Probab=89.50  E-value=0.92  Score=36.83  Aligned_cols=62  Identities=13%  Similarity=0.156  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 010712          130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE  194 (503)
Q Consensus       130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~e  194 (503)
                      .++++|+++|++|+....++...+..|.++|   =.+.++|.++-++.=+.-+++..++++++.+
T Consensus        15 ~di~eLkkevkKL~~~A~q~kmdLHDLaEdL---P~~w~~i~~vA~~tyda~~~l~~ak~~L~~~   76 (81)
T 3csx_A           15 EAVADLKKKVRKLNSKAGQMKMDLHDLAEGL---PTDYENLVETAEKTYEIFRELDQLKKKLNIW   76 (81)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566677777777777777777777776663   3344555555555555555555555554433

>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}

Probab=89.15  E-value=2.7  Score=32.90  Aligned_cols=56  Identities=13%  Similarity=0.167  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe  227 (503)
                      +|...+.+.+.||++|..-+..++.++..-.+--+.|+.+....+..+..|..++.
T Consensus         7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~   62 (74)
T 2q6q_A            7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLS   62 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence            34444445555555555555555555555555555666666666666655555443

>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}

Probab=89.15  E-value=2.1  Score=36.25  Aligned_cols=26  Identities=27%  Similarity=0.203  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           63 QKLATENQRLAATHGTLRQELAAAQH   88 (503)
Q Consensus        63 q~Le~enqrLa~e~~~LrqeLa~lq~   88 (503)
                      ++|+.+....+.++...+++|..++.
T Consensus        38 eeLQ~Ei~~~E~QL~iArQKLkdAe~   63 (107)
T 2k48_A           38 QELQENITAHEQQLVTARQKLKDAEK   63 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444443

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=89.03  E-value=1.6  Score=35.59  Aligned_cols=19  Identities=42%  Similarity=0.692  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 010712           79 LRQELAAAQHELQILHGQI   97 (503)
Q Consensus        79 LrqeLa~lq~EL~~L~~qL   97 (503)
                      |..+|+.++.||..|+-.+
T Consensus        25 Lq~Ql~~Lq~Ev~~LRGqi   43 (83)
T 2xdj_A           25 LQQQLSDNQSDIDSLRGQI   43 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHH
Confidence            3344444444444444433

>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A

Probab=88.99  E-value=19  Score=35.69  Aligned_cols=17  Identities=6%  Similarity=0.040  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010712           68 ENQRLAATHGTLRQELA   84 (503)
Q Consensus        68 enqrLa~e~~~LrqeLa   84 (503)
                      ++..+..+...++.+.+
T Consensus        38 el~~f~keRa~iE~~Ya   54 (320)
T 3m3w_A           38 DLVSCFQERARIEKAYA   54 (320)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444445544433

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=88.95  E-value=6.5  Score=37.43  Aligned_cols=35  Identities=17%  Similarity=0.175  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQ   87 (503)
Q Consensus        53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq   87 (503)
                      +-+.-+...+..+..++..|..+.+.|.++...+.
T Consensus       125 elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~  159 (213)
T 1ik9_A          125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQ  159 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555444444444333

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=88.81  E-value=1.1  Score=46.63  Aligned_cols=56  Identities=20%  Similarity=0.195  Sum_probs=35.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE  225 (503)
Q Consensus       170 i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraE  225 (503)
                      |.+++.+|..|++++..++.+++.++..+.++.+++.+.+.....|..+|++|+-.
T Consensus         5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn   60 (403)
T 4etp_A            5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN   60 (403)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            44455556666666666666666666666666666666666666666667666643

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=88.77  E-value=0.35  Score=47.22  Aligned_cols=38  Identities=8%  Similarity=-0.018  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          194 EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       194 ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      +++.+..+.++...+.+.+..+.+||.+|++||++|..
T Consensus        59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s   96 (251)
T 3m9b_A           59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ   96 (251)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33344444444455555666667777777777777643

>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}

Probab=88.76  E-value=2.1  Score=34.11  Aligned_cols=53  Identities=11%  Similarity=0.077  Sum_probs=27.5

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712          180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV  232 (503)
Q Consensus       180 L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~e  232 (503)
                      ++..|..++.++...+........+.+++-+-...++.||...+.-|+--+.+
T Consensus        10 ~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGEe~R   62 (74)
T 2xv5_A           10 SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEER   62 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            33333333333333333344444555566666667788888888777654443

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=88.75  E-value=1.5  Score=32.64  Aligned_cols=45  Identities=11%  Similarity=0.136  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      .+|+.+..+|+.|-.+...|..++..|+.++..++.|..+...+|
T Consensus         4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl   48 (52)
T 1jcd_A            4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA   48 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345556666666666666666666666666666666655555554

>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1

Probab=88.69  E-value=9.1  Score=31.51  Aligned_cols=15  Identities=40%  Similarity=0.676  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHH
Q 010712          102 SERELQMRNLTEKIA  116 (503)
Q Consensus       102 ae~E~el~eL~eki~  116 (503)
                      ++.++.+++|+.+|+
T Consensus        42 ~~R~~~i~el~akid   56 (101)
T 1d7m_A           42 AEREKRLRELEAKLD   56 (101)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444555554443

>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=88.38  E-value=1  Score=32.10  Aligned_cols=39  Identities=15%  Similarity=0.138  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       195 kk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      ++++..+++..-.+|..-+.+++-|..|+.|++.+++++
T Consensus         9 rkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev   47 (52)
T 3he5_B            9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV   47 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333344444445555555555555544

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}

Probab=88.35  E-value=2.9  Score=42.16  Aligned_cols=36  Identities=17%  Similarity=0.080  Sum_probs=24.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQE   82 (503)
Q Consensus        47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrqe   82 (503)
                      ....+++.+..+..++..|..+..+|..++..|++.
T Consensus        93 ~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~  128 (357)
T 3rrk_A           93 SLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELF  128 (357)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            356667677777777777776666666666666555

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1

Probab=88.35  E-value=5  Score=36.65  Aligned_cols=18  Identities=17%  Similarity=0.370  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010712          107 QMRNLTEKIAKMEAELKT  124 (503)
Q Consensus       107 el~eL~eki~kLEaEL~~  124 (503)
                      ++.++...|..++..+..
T Consensus        44 ~v~~I~~~i~~i~~~v~~   61 (180)
T 1s94_A           44 QVEEIRAMIDKISDNVDA   61 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444443333

>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}

Probab=88.25  E-value=6.2  Score=34.22  Aligned_cols=13  Identities=23%  Similarity=0.434  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHHH
Q 010712          108 MRNLTEKIAKMEA  120 (503)
Q Consensus       108 l~eL~eki~kLEa  120 (503)
                      ++++..++-.++.
T Consensus        23 ~~~~~~~~~~~~~   35 (125)
T 4g2k_A           23 IEEILSKIYHIEN   35 (125)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhH
Confidence            3333333333333

>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=88.13  E-value=1.7  Score=31.04  Aligned_cols=40  Identities=18%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           58 QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        58 ~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      +..+|.+|..++-+|+.+-+.|+.-|+.++.+|.+|+.++
T Consensus         8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev   47 (52)
T 3he5_B            8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV   47 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555566665555544

>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A

Probab=88.12  E-value=23  Score=38.08  Aligned_cols=15  Identities=13%  Similarity=0.127  Sum_probs=9.0

Q ss_pred             HHHHHHHHhcccccc
Q 010712          220 EKLRAELMNAPNVDR  234 (503)
Q Consensus       220 ekLraELekle~el~  234 (503)
                      ++|...|++|...+.
T Consensus       783 QELtqKVdNLNQAVs  797 (876)
T 4dvy_P          783 QKVTDKVDNLNQAVS  797 (876)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            355566677766653

>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}

Probab=88.10  E-value=8.4  Score=32.04  Aligned_cols=6  Identities=33%  Similarity=0.528  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 010712          151 AKVHQL  156 (503)
Q Consensus       151 ~qiq~L  156 (503)
                      .+|..|
T Consensus        74 gEI~~L   79 (99)
T 3ni0_A           74 NEVTKL   79 (99)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=88.10  E-value=3.6  Score=34.27  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHH-HHHhhh
Q 010712          147 EELIAKVHQLTQDLQR-AHTDVQ  168 (503)
Q Consensus       147 qeLe~qiq~L~~ELqr-lk~elq  168 (503)
                      ..+..++..-+.+|.+ ++.+++
T Consensus        68 ~~~~~klr~Yk~dl~~~lk~~lk   90 (97)
T 3onj_A           68 ATYKAKLREWKKTIQSDIKRPLQ   90 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444 443333

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*

Probab=87.94  E-value=2.9  Score=44.66  Aligned_cols=29  Identities=17%  Similarity=0.204  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraEL  226 (503)
                      ...++++++++++++..++.++..+-..|
T Consensus       113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~i  141 (484)
T 3lss_A          113 SKDLSDQVAGLAKEAQQLEEERDKLMLNV  141 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34455555666666666666555444433

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=87.90  E-value=0.98  Score=35.73  Aligned_cols=11  Identities=36%  Similarity=0.688  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHH
Q 010712          111 LTEKIAKMEAE  121 (503)
Q Consensus       111 L~eki~kLEaE  121 (503)
                      |...+..|..|
T Consensus        55 Lr~~i~~L~~E   65 (70)
T 1gd2_E           55 LRQKVRQLEEE   65 (70)
T ss_dssp             HTTHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33334444443

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=87.86  E-value=0.5  Score=46.13  Aligned_cols=18  Identities=6%  Similarity=0.340  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010712          107 QMRNLTEKIAKMEAELKT  124 (503)
Q Consensus       107 el~eL~eki~kLEaEL~~  124 (503)
                      .++++..++.+|++|+++
T Consensus        76 ~Lk~ar~El~~LkeEler   93 (251)
T 3m9b_A           76 TLKEARQQLLALREEVDR   93 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444443

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}

Probab=87.41  E-value=0.52  Score=49.46  Aligned_cols=12  Identities=33%  Similarity=0.598  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q 010712          215 MATEVEKLRAEL  226 (503)
Q Consensus       215 m~rEIekLraEL  226 (503)
                      ++.++.+++++|
T Consensus        87 ~~~~~~~~~~~~   98 (425)
T 2dq3_A           87 LEEELRKVEEEL   98 (425)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}

Probab=87.26  E-value=26  Score=35.06  Aligned_cols=28  Identities=0%  Similarity=-0.143  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLES  204 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eq  204 (503)
                      |..++.+++.++.+++..++.+..+.+.
T Consensus       228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~  255 (357)
T 3rrk_A          228 AARMKERARLAPEELVGIREEVARLSRE  255 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555554444444433

>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}

Probab=87.25  E-value=25  Score=34.89  Aligned_cols=13  Identities=8%  Similarity=0.391  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHh
Q 010712          216 ATEVEKLRAELMN  228 (503)
Q Consensus       216 ~rEIekLraELek  228 (503)
                      ++||+....++..
T Consensus       257 e~eI~~Fa~~~~~  269 (287)
T 3g9g_A          257 QSEIDRFAKDASQ  269 (287)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            5566665555543

>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T

Probab=87.25  E-value=6.9  Score=32.53  Aligned_cols=15  Identities=7%  Similarity=0.089  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKL   65 (503)
Q Consensus        51 LEqeIe~~~~EIq~L   65 (503)
                      +.+++......++.|
T Consensus        11 V~~D~~~ql~~l~~~   25 (95)
T 2c5k_T           11 VVKDTKEQLNRINNY   25 (95)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444443

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=87.23  E-value=4.5  Score=31.83  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Q 010712          208 MEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       208 mEk~L~sm~rEIekLraELekle  230 (503)
                      +-.++.++.-|-.-|+..|.+++
T Consensus        51 LNDEiislNIENNlL~~rl~~l~   73 (75)
T 3a7o_A           51 LNDELISGTIENNVLQQKLSDLK   73 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC---
T ss_pred             hhHHHHHhHHHHHHHHHHHHHHh
Confidence            33444444444444444444443

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=87.21  E-value=44  Score=37.77  Aligned_cols=12  Identities=17%  Similarity=0.169  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHhc
Q 010712          218 EVEKLRAELMNA  229 (503)
Q Consensus       218 EIekLraELekl  229 (503)
                      |.+|.++-++.+
T Consensus       791 e~~kf~~~v~ai  802 (861)
T 2zuo_A          791 EAKKFKEMTEAL  802 (861)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhh
Confidence            344444444433

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=87.11  E-value=3.1  Score=32.75  Aligned_cols=31  Identities=16%  Similarity=0.261  Sum_probs=13.8

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           44 MMPPPEVMEQKIASQHVEMQKLATENQRLAA   74 (503)
Q Consensus        44 ~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~   74 (503)
                      +..+-..+++.|..+..++...+.+..+|.+
T Consensus         9 ~~~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e   39 (75)
T 3a7o_A            9 IVSHDDALLNTLAILQKELKSKEQEIRRLKE   39 (75)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555444444444443

>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*

Probab=86.85  E-value=5.9  Score=42.04  Aligned_cols=23  Identities=4%  Similarity=0.043  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHH
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFY  198 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~  198 (503)
                      |+++++.|+++|+.+++++++.+
T Consensus       417 e~~kl~~E~~~l~~~i~~l~~iL  439 (470)
T 3ilw_A          417 ERQRIIDDLAKIEAEIADLEDIL  439 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            45555555555555544444433

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A

Probab=86.80  E-value=11  Score=38.27  Aligned_cols=146  Identities=15%  Similarity=0.117  Sum_probs=0.0

Q ss_pred             HhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--
Q 010712           93 LHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI--  170 (503)
Q Consensus        93 L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi--  170 (503)
                      +..-+..+-...-..++.+.++++.+|.++-.-..     .....++..++.++..+...+..+..-|.++.......  
T Consensus       182 l~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~-----~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~  256 (363)
T 2iub_A          182 LYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPE-----KETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIE  256 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCC
Q 010712          171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRADGSYGGATGN  246 (503)
Q Consensus       171 ~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~~~~~y~~~~~~  246 (503)
                      ++.+..+.++..++.++...++..+..+..+.+....+..+.   ..++.|.=.-+.-+=--+.=-.|-||||+.+
T Consensus       257 ~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~---~N~imk~LTiit~IflP~T~IaGiyGMNf~~  329 (363)
T 2iub_A          257 KETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNK---TNEVMKVLTIIATIFMPLTFIAGIYGMNFEY  329 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhcccCCC

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=86.67  E-value=4  Score=34.26  Aligned_cols=41  Identities=20%  Similarity=0.222  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHH
Q 010712          103 ERELQMRNLTEKIAKMEAELKTA-----EPVKLEFQKSKTEAQNLV  143 (503)
Q Consensus       103 e~E~el~eL~eki~kLEaEL~~l-----e~Lk~ELeqLraELqqL~  143 (503)
                      +.+..+.+..+-|..|+-|++.+     ..+...|...+.+|.+++
T Consensus        42 ~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk   87 (102)
T 1vcs_A           42 NVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLE   87 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555432     233344444444444433

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=86.65  E-value=2.6  Score=48.98  Aligned_cols=50  Identities=18%  Similarity=0.160  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 010712          140 QNLVVAREELIAKVHQLTQDLQR--AHTDVQQIPALLSELESLRQEYHHCRG  189 (503)
Q Consensus       140 qqL~~erqeLe~qiq~L~~ELqr--lk~elqqi~~l~~EIe~L~qELq~lR~  189 (503)
                      ++...+..+++.++++.+..|..  ...++..++.+.++.++++.+|...+.
T Consensus       889 qkF~rka~~~e~Wl~ek~~~l~s~d~g~dL~~Vqal~KKhea~e~dl~a~e~  940 (1010)
T 1g8x_A          889 QKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEG  940 (1010)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHSSCCSCCSTTTTGGGTTSHHHHTTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555554444421  111233344444444444444444333

>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A

Probab=86.57  E-value=23  Score=33.93  Aligned_cols=20  Identities=20%  Similarity=0.164  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHhccccc
Q 010712          214 TMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       214 sm~rEIekLraELekle~el  233 (503)
                      .+.+.+.+|..+...|....
T Consensus       201 ~i~~r~~~l~~~w~~L~~~~  220 (235)
T 2odv_A          201 QMYRRVYRLHKRLVAIRTEY  220 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45555666666665555443

>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1

Probab=86.52  E-value=9.8  Score=34.05  Aligned_cols=14  Identities=7%  Similarity=0.349  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHHH
Q 010712          149 LIAKVHQLTQDLQR  162 (503)
Q Consensus       149 Le~qiq~L~~ELqr  162 (503)
                      |..+++.++.+++.
T Consensus        45 li~eF~~~Q~~~~~   58 (151)
T 2pih_A           45 IVNQIKALQKQAVN   58 (151)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333444444433

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=86.50  E-value=1.5  Score=45.92  Aligned_cols=55  Identities=16%  Similarity=0.167  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          179 SLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       179 ~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el  233 (503)
                      .|+.|+.++++.++.+++.+.++..+++++++++...+.+..+|..+|..++..+
T Consensus         7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI   61 (412)
T 3u06_A            7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI   61 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence            3444444444444444444444444445555555555555556666665555444

>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1

Probab=86.48  E-value=3.2  Score=31.50  Aligned_cols=58  Identities=29%  Similarity=0.420  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHH
Q 010712           76 HGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT--------AEPVKLEFQKSKTEAQN  141 (503)
Q Consensus        76 ~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~--------le~Lk~ELeqLraELqq  141 (503)
                      +.++++.|+.++.+|+.|--.-.        ++...+..|...+.|+..        ++.|++|...++.||+.
T Consensus         4 waefkqrlaaiktrlqalggsea--------elaafekeiaafeselqaykgkgnpevealrkeaaairdelqa   69 (73)
T 2a3d_A            4 WAEFKQRLAAIKTRLQALGGSEA--------ELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQA   69 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSGGG--------THHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Confidence            45677888888888777644321        344455566677777763        45676666666666653

>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}

Probab=86.47  E-value=20  Score=37.51  Aligned_cols=134  Identities=9%  Similarity=0.076  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           70 QRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREEL  149 (503)
Q Consensus        70 qrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeL  149 (503)
                      .++..+...+ ...+.....|.+++.-+.....-+...|..+...+..|-.    .=.-...-+.+..+.+.|......+
T Consensus         9 ~q~r~~~s~~-~~~~~~~~~l~~le~~~~~~~~gl~~~l~~ff~alq~la~----~P~~~~~R~~vl~~a~~La~~~n~~   83 (463)
T 2d4y_A            9 NQLRGAQNQS-SGLTTRYEQMSKIDNLLADKSSSLSGSLQSFFTSLQTLVS----NAEDPAARQALIGKAEGLVNQFKTT   83 (463)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-HHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHH
Q 010712          150 IAKVHQLTQDL-QRAHTDVQQIPALLSELESLRQEYHHCR-----GTYEYEKKFYNDHLESLQVM  208 (503)
Q Consensus       150 e~qiq~L~~EL-qrlk~elqqi~~l~~EIe~L~qELq~lR-----~ele~ekk~~~el~eqlqem  208 (503)
                      ..+++.++.++ .+++..+.+|..+.++|.+|.++|.+.+     ..-..+..+.+.+..+|.++
T Consensus        84 ~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS~~  148 (463)
T 2d4y_A           84 DQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKI  148 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHHhh

>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}

Probab=86.38  E-value=11  Score=30.02  Aligned_cols=20  Identities=10%  Similarity=0.076  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 010712          144 VAREELIAKVHQLTQDLQRA  163 (503)
Q Consensus       144 ~erqeLe~qiq~L~~ELqrl  163 (503)
                      .....+....++|+..|.+|
T Consensus        16 ~~A~~~~~~~~~i~~~l~~L   35 (99)
T 3zbh_A           16 GVARQYNVESSNVTELIARL   35 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=86.36  E-value=7.9  Score=36.82  Aligned_cols=23  Identities=13%  Similarity=0.079  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712           71 RLAATHGTLRQELAAAQHELQIL   93 (503)
Q Consensus        71 rLa~e~~~LrqeLa~lq~EL~~L   93 (503)
                      .+..+...|..+...++.++..+
T Consensus       136 ~~~~~~~~L~~e~~~l~~~~~~l  158 (213)
T 1ik9_A          136 ENQAKNEHLQKENERLLRDWNDV  158 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334433333333333333

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=86.17  E-value=2.2  Score=34.79  Aligned_cols=28  Identities=11%  Similarity=0.146  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           71 RLAATHGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        71 rLa~e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      .|..+++.|+.+++.++-.++.+..+|.
T Consensus        24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~   51 (83)
T 2xdj_A           24 QLQQQLSDNQSDIDSLRGQIQENQYQLN   51 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3444444555555555555555544443

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=86.10  E-value=3.3  Score=29.17  Aligned_cols=42  Identities=24%  Similarity=0.261  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        56 e~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      .+++.|+..|+.++..|....--.+.-|+-++.+|..|++.|
T Consensus         6 aqlenevaslenenetlkkknlhkkdliaylekeianlrkki   47 (49)
T 3he5_A            6 AQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI   47 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence            344445555555555554433333333444445554444433

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=86.06  E-value=14  Score=30.89  Aligned_cols=18  Identities=22%  Similarity=0.296  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010712          208 MEKNYITMATEVEKLRAE  225 (503)
Q Consensus       208 mEk~L~sm~rEIekLraE  225 (503)
                      +..++.....+|++|+.+
T Consensus        83 ~~~klr~Yk~dL~~lk~e  100 (102)
T 2qyw_A           83 MMSKLRNYRKDLAKLHRE  100 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            333444444444444444

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=86.03  E-value=27  Score=34.17  Aligned_cols=31  Identities=6%  Similarity=0.133  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712          204 SLQVMEKNYITMATEVEKLRAELMNAPNVDR  234 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraELekle~el~  234 (503)
                      ..+.|-++.+.++++|......|..|..+..
T Consensus       151 s~~~LLkkh~~le~~l~~~~~~i~~L~~~a~  181 (283)
T 3pe0_A          151 RLEDLLQDAQDEKEQLNEYKGHLSGLAKRAK  181 (283)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666777777777777777766544

>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}

Probab=85.96  E-value=18  Score=31.95  Aligned_cols=14  Identities=7%  Similarity=0.067  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHhcc
Q 010712          217 TEVEKLRAELMNAP  230 (503)
Q Consensus       217 rEIekLraELekle  230 (503)
                      .-+...+.-|.-+.
T Consensus       117 ~~l~~~~~~L~~L~  130 (154)
T 3opc_A          117 VNLRHTQESLDALR  130 (154)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444555554

>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}

Probab=85.87  E-value=16  Score=31.24  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD  166 (503)
Q Consensus       131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e  166 (503)
                      +|..+|.+|..+..++.+|-.++-.+..++.+++.+
T Consensus        13 ~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~   48 (114)
T 3rmi_A           13 ELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR   48 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555555543

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=85.58  E-value=2.6  Score=31.31  Aligned_cols=32  Identities=9%  Similarity=0.041  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +..+.++...|.+.|.....+|++|+++|+++
T Consensus        18 l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L   49 (51)
T 3m91_A           18 IDSLAARNSKLMETLKEARQQLLALREEVDRL   49 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444445555555555666666666654

>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1

Probab=85.56  E-value=22  Score=32.58  Aligned_cols=22  Identities=14%  Similarity=0.217  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHH
Q 010712          177 LESLRQEYHHCRGTYEYEKKFY  198 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~  198 (503)
                      +..|+.||..++..|...+..+
T Consensus       105 f~~Lq~eL~~~EnrIa~ARr~Y  126 (171)
T 2etd_A          105 FRQLMDELAGTENRIAVARRDY  126 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444443333

>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}

Probab=85.53  E-value=37  Score=35.20  Aligned_cols=13  Identities=46%  Similarity=0.608  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHH
Q 010712          148 ELIAKVHQLTQDL  160 (503)
Q Consensus       148 eLe~qiq~L~~EL  160 (503)
                      ++..+|+.|.+-+
T Consensus       479 kV~aKIDNLNQaa  491 (569)
T 4dvz_A          479 EWISKVENLNAAL  491 (569)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHH
Confidence            3444444444433

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=85.42  E-value=2  Score=34.64  Aligned_cols=43  Identities=9%  Similarity=0.039  Sum_probs=18.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA  224 (503)
Q Consensus       182 qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLra  224 (503)
                      ..|.+|+..+.+....++++.+.+....+.+..|.+.+..|..
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~   56 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE   56 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444443344334433333333

>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*

Probab=85.42  E-value=3.9  Score=45.38  Aligned_cols=23  Identities=13%  Similarity=0.166  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHH
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFY  198 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~  198 (503)
                      |++++++|+++++.+++++++.+
T Consensus       638 e~~kl~~E~~~l~~~i~~l~~iL  660 (692)
T 2xcs_B          638 ERDKIEAEYNELLNYISELETIL  660 (692)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555555444444333

>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A

Probab=85.42  E-value=9.7  Score=32.02  Aligned_cols=80  Identities=18%  Similarity=0.269  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQ-----------------ELAAAQHELQILHGQIGGMKSERELQMRNL  111 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrq-----------------eLa~lq~EL~~L~~qL~~lkae~E~el~eL  111 (503)
                      .++|.+|+....+|-.++.+..+|.+.-...-.                 .++.....+..|...+..+..+.|.++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~sQLktTnDdvA~NTTdIaTnT~NIa~nT~NIATNTTNItNLtdsV~~L~dDAed~~~~~   81 (107)
T 2wps_A            2 KQIEDKIEEILSKIYHIENEIARIKKLIEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTLMKQIEDKIEEI   81 (107)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccchhhccchhhhccccchhhHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHhHH
Q 010712          112 TEKIAKMEAELKTAEPV  128 (503)
Q Consensus       112 ~eki~kLEaEL~~le~L  128 (503)
                      ..++-.++.|+.++.+|
T Consensus        82 ~~~~~~~~~~~~~~~~~   98 (107)
T 2wps_A           82 LSKIYHIENEIARIKKL   98 (107)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH

>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*

Probab=85.41  E-value=9.1  Score=36.50  Aligned_cols=10  Identities=30%  Similarity=0.839  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCC
Q 010712           19 PGMMHPDPFVS   29 (503)
Q Consensus        19 ~~~~~~~~~~~   29 (503)
                      .||| ||.|-.
T Consensus        14 ~~~i-pe~wf~   23 (214)
T 2cly_A           14 FGLI-PEEFFQ   23 (214)
T ss_dssp             -----------
T ss_pred             cccC-hHHHHH
Confidence            3444 555544

>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A

Probab=85.39  E-value=11  Score=37.96  Aligned_cols=26  Identities=15%  Similarity=0.146  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          204 SLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       204 qlqemEk~L~sm~rEIekLraELekl  229 (503)
                      ..+.|++.+..+.+.|++|...|+..
T Consensus       289 k~~~leek~Kk~~rKV~Kl~~~Le~r  314 (323)
T 2p01_A          289 KHALLEGRTKELGYTVKKHLQDLSGR  314 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888888888888888877764

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=85.33  E-value=15  Score=30.45  Aligned_cols=24  Identities=4%  Similarity=0.131  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHhc
Q 010712          206 QVMEKNYITMATEVEK-LRAELMNA  229 (503)
Q Consensus       206 qemEk~L~sm~rEIek-LraELekl  229 (503)
                      ..+..++....++|.+ |+.+|.++
T Consensus        68 ~~~~~klr~Yk~dl~~~lk~~lk~l   92 (97)
T 3onj_A           68 ATYKAKLREWKKTIQSDIKRPLQSL   92 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444445555555555 55555554

>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}

Probab=85.24  E-value=6.2  Score=35.61  Aligned_cols=11  Identities=9%  Similarity=0.299  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHH
Q 010712          176 ELESLRQEYHH  186 (503)
Q Consensus       176 EIe~L~qELq~  186 (503)
                      +|+.++..++.
T Consensus        74 qi~~iq~q~~~   84 (150)
T 4dci_A           74 QVANIQQQVAG   84 (150)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            34444444333

>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}

Probab=85.22  E-value=24  Score=32.87  Aligned_cols=35  Identities=11%  Similarity=0.182  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ  161 (503)
Q Consensus       127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELq  161 (503)
                      .|...|..++.-|.....++..|..++..|..+++
T Consensus        84 sLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~E  118 (190)
T 3thf_A           84 SLSERLAQTESSLETRQQERGALESKRDLLYEQME  118 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHH
Confidence            34444444444444445555555555555554443

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A

Probab=85.21  E-value=16  Score=38.60  Aligned_cols=15  Identities=20%  Similarity=0.419  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 010712          107 QMRNLTEKIAKMEAE  121 (503)
Q Consensus       107 el~eL~eki~kLEaE  121 (503)
                      .+.+|...+..++.+
T Consensus       300 ~~~~L~~~l~~v~~~  314 (483)
T 2j1d_G          300 EISTLRSGLKAVETE  314 (483)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=85.09  E-value=34  Score=34.52  Aligned_cols=37  Identities=3%  Similarity=-0.033  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAA   86 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~l   86 (503)
                      .+-..|...+.++..|+..+.+|......+..-+..+
T Consensus        18 ~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~   54 (385)
T 2q13_A           18 QTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNEL   54 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777888888888888877777766665544443

>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}

Probab=85.03  E-value=11  Score=31.47  Aligned_cols=18  Identities=0%  Similarity=0.008  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHhhHH
Q 010712          175 SELESLRQEYHHCRGTYE  192 (503)
Q Consensus       175 ~EIe~L~qELq~lR~ele  192 (503)
                      .+|.++..+|+.|+.++.
T Consensus        62 ~~L~e~~~kid~L~~el~   79 (98)
T 2ke4_A           62 PQIAETLSNIERLKLEVQ   79 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444433

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A

Probab=85.00  E-value=28  Score=33.39  Aligned_cols=27  Identities=15%  Similarity=0.124  Sum_probs=16.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           45 MPPPEVMEQKIASQHVEMQKLATENQR   71 (503)
Q Consensus        45 ~p~p~~LEqeIe~~~~EIq~Le~enqr   71 (503)
                      .+.-..||++++..+..+.+|......
T Consensus        30 ~~d~~~lE~r~d~~k~~~~kl~k~~~~   56 (256)
T 1zww_A           30 DDDFKEMERKVDVTSRAVMEIMTKTIE   56 (256)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334566677776666666666655543

>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}

Probab=84.53  E-value=28  Score=32.95  Aligned_cols=28  Identities=4%  Similarity=0.156  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          139 AQNLVVAREELIAKVHQLTQDLQRAHTD  166 (503)
Q Consensus       139 LqqL~~erqeLe~qiq~L~~ELqrlk~e  166 (503)
                      +..+..++.+++..+..|..+|.+.+..
T Consensus       146 ~l~~lvelA~le~~~~~L~~eIkkT~RR  173 (217)
T 3aon_A          146 LLPKLLKLAEVEKTCQLMAEEIEKTRRR  173 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3344445556666666666666554443

>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A

Probab=84.33  E-value=17  Score=32.35  Aligned_cols=25  Identities=12%  Similarity=0.119  Sum_probs=10.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHH
Q 010712          121 ELKTAEPVKLEFQKSKTEAQNLVVA  145 (503)
Q Consensus       121 EL~~le~Lk~ELeqLraELqqL~~e  145 (503)
                      +..+...|.++|+.+...+.+|..+
T Consensus        57 dy~EYk~Lhaev~~v~~~F~~Ld~~   81 (140)
T 1xaw_A           57 GLQEYKSLQSVLDEINKELSRLDKE   81 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444333

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=84.31  E-value=4.1  Score=40.85  Aligned_cols=57  Identities=9%  Similarity=0.141  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      .||..+....+.++..+..+......+.++|.-....+-.+++++..++-++-++++
T Consensus        90 ~e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~ln~~~pdw~~l~k  146 (302)
T 2y3a_B           90 KEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRK  146 (302)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhHHhhhccCChHHHHHhh
Confidence            345545444444444444444333444444444444444556666666666655544

>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}

Probab=84.21  E-value=4.8  Score=34.46  Aligned_cols=13  Identities=15%  Similarity=0.335  Sum_probs=6.0

Q ss_pred             ChHHHHHHHHHHH
Q 010712           47 PPEVMEQKIASQH   59 (503)
Q Consensus        47 ~p~~LEqeIe~~~   59 (503)
                      .++.|+.+|...+
T Consensus        23 ~ieeLq~Ei~~~E   35 (113)
T 4fi5_A           23 TMEELQREINAHE   35 (113)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            4444444444444

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}

Probab=84.01  E-value=19  Score=36.00  Aligned_cols=10  Identities=30%  Similarity=0.408  Sum_probs=8.1

Q ss_pred             CCCCCCCCCC
Q 010712          237 DGSYGGATGN  246 (503)
Q Consensus       237 ~~~y~~~~~~  246 (503)
                      .|-||||+.+
T Consensus       296 aGiyGMNf~~  305 (339)
T 4ev6_A          296 TGIYGMNFSY  305 (339)
T ss_dssp             HHHTTCCCSC
T ss_pred             HhhccCcCCC
Confidence            5899999864

>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}

Probab=83.96  E-value=3.2  Score=44.50  Aligned_cols=45  Identities=9%  Similarity=0.174  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe  227 (503)
                      ++++|.+|+++++.+++.+++.       +.+-+....-+..|++.++.+..
T Consensus       455 e~~kl~~E~~~l~~ei~~l~~i-------L~~~~~~~~~i~~el~~i~~~yg  499 (514)
T 2inr_A          455 DIVALEGEHKELEALIKQLRHI-------LDNHDALLNVIKEELNEIKKKFK  499 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHHHHcC
Confidence            3444444444444444433333       33333333344555555555543

>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A

Probab=83.94  E-value=38  Score=34.03  Aligned_cols=60  Identities=17%  Similarity=0.175  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHH------------HHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712          174 LSELESLRQEYHHCRGTYEYEKKFYNDHL---ESLQ------------VMEKNYITMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       174 ~~EIe~L~qELq~lR~ele~ekk~~~el~---eqlq------------emEk~L~sm~rEIekLraELekle~el  233 (503)
                      ..|++.++.||.+.+..|+.++=.-+++.   +.++            ........|+..++++...|+++...|
T Consensus       237 ~~ELeSlK~EL~HfE~rL~KlrH~~~El~l~~~k~k~~e~~g~~~~~~~~~~k~~~leek~Kk~~rKV~Kl~~~L  311 (323)
T 2p01_A          237 DKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDL  311 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788888777776665543333333   1111            113346789999999999999987765

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=83.85  E-value=3.8  Score=30.18  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHH
Q 010712          173 LLSELESLRQEYHHCRGTYEY  193 (503)
Q Consensus       173 l~~EIe~L~qELq~lR~ele~  193 (503)
                      +..+++.|+.|-.+||+|++.
T Consensus         8 L~~QVe~Lk~ENshLrrEL~d   28 (54)
T 1deb_A            8 LLKQVEALKMENSNLRQELED   28 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHh
Confidence            444555555555555555443

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=83.85  E-value=5.4  Score=38.25  Aligned_cols=15  Identities=27%  Similarity=0.284  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHhc
Q 010712          215 MATEVEKLRAELMNA  229 (503)
Q Consensus       215 m~rEIekLraELekl  229 (503)
                      .+.+++.++..|+++
T Consensus       117 a~a~l~~a~~~l~~~  131 (277)
T 2f1m_A          117 AKAAVETARINLAYT  131 (277)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhcC
Confidence            334445555555554

>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}

Probab=83.73  E-value=44  Score=34.63  Aligned_cols=38  Identities=18%  Similarity=0.308  Sum_probs=19.4

Q ss_pred             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIAS-------QHVEMQKLATENQRLAATHGTLRQELAAA   86 (503)
Q Consensus        49 ~~LEqeIe~-------~~~EIq~Le~enqrLa~e~~~LrqeLa~l   86 (503)
                      ..||.++-.       ...-|..++..+..|......+..-.+.+
T Consensus       299 ~~l~dk~~akgls~~e~nklikdfl~snkelv~k~~nfnkavaea  343 (569)
T 4dvz_A          299 RNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEA  343 (569)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHhcCCCHHHHHHHHHHHHhccHHHHHHHhhHHHHHHHh
Confidence            777776543       23334444555555555555554444433

>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A

Probab=83.66  E-value=1.4  Score=36.57  Aligned_cols=13  Identities=23%  Similarity=0.406  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHh
Q 010712          216 ATEVEKLRAELMN  228 (503)
Q Consensus       216 ~rEIekLraELek  228 (503)
                      +.||..|+.+|+.
T Consensus        74 EeEI~rLr~eLe~   86 (92)
T 3vp9_A           74 EEEIKHLKLGLEQ   86 (92)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHH
Confidence            4455555555554

>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B

Probab=83.59  E-value=5.3  Score=31.98  Aligned_cols=24  Identities=8%  Similarity=0.052  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          140 QNLVVAREELIAKVHQLTQDLQRA  163 (503)
Q Consensus       140 qqL~~erqeLe~qiq~L~~ELqrl  163 (503)
                      ..+.....+|+..++.|...+..|
T Consensus        15 ~~~~~~~~~i~~~l~~l~~~v~~l   38 (94)
T 3fav_B           15 SAIQGNVTSIHSLLDEGKQSLTKL   38 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444433

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=83.58  E-value=5.3  Score=32.18  Aligned_cols=58  Identities=16%  Similarity=0.106  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      ..+|..+.+.+..|..-+..+-..+.+.-+.+..++.++......+++-..+|.++.+
T Consensus        20 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~   77 (83)
T 1sfc_B           20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK   77 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444455555555666667777777777777777777766544

>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.55  E-value=12  Score=32.51  Aligned_cols=27  Identities=7%  Similarity=0.065  Sum_probs=12.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAA   74 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~   74 (503)
                      ...|-+.|....-.|......++++..
T Consensus        12 f~~l~~~is~~I~~In~~vs~l~r~v~   38 (130)
T 2dnx_A           12 FSSIIQTCSGNIQRISQATAQIKNLMS   38 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555544444444444433

>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A

Probab=83.51  E-value=13  Score=29.47  Aligned_cols=24  Identities=0%  Similarity=0.014  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          207 VMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       207 emEk~L~sm~rEIekLraELekle  230 (503)
                      .+.+.|..+...|.+.....+..+
T Consensus        64 ~~~~~L~~i~~~L~~~a~~y~~~d   87 (97)
T 2vs0_A           64 KFAQLLEEIKQQLNSTADAVQEQD   87 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444433

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A

Probab=83.47  E-value=32  Score=32.87  Aligned_cols=50  Identities=2%  Similarity=-0.032  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~   99 (503)
                      ..-..|...+.+|..++..+.+|......+-..+.........+...|..
T Consensus        18 ~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~   67 (265)
T 2q12_A           18 QTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKE   67 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566777777777777777777776666655555544444444444443

>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V

Probab=83.42  E-value=3.8  Score=41.98  Aligned_cols=10  Identities=40%  Similarity=0.581  Sum_probs=3.9

Q ss_pred             HHHHHHHHHH
Q 010712          111 LTEKIAKMEA  120 (503)
Q Consensus       111 L~eki~kLEa  120 (503)
                      |.+++..|+.
T Consensus         8 ~~~r~~el~~   17 (354)
T 3d5a_X            8 LEEEYRELEA   17 (354)
T ss_dssp             HTHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}

Probab=83.25  E-value=11  Score=32.35  Aligned_cols=65  Identities=14%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          156 LTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       156 L~~ELqrlk~elqqi~~l~~E-Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL  226 (503)
                      |..||++++.+..++...-.+ +..|+.|   ++++++.++++++.   .+++++.+.....++++.+...|
T Consensus        37 L~~ELeRLr~~~d~~~K~HE~kklqLkse---~e~E~ae~k~KYD~---~lqe~ese~~~kkK~le~~~~kV  102 (115)
T 3vem_A           37 FLHELEKLRRESENSKKTFEEKKSILKAE---LERKMAEVQAEFRR---KFHEVEAEHNTRTTKIEKDKNLV  102 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH

>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*

Probab=83.20  E-value=8.8  Score=36.64  Aligned_cols=17  Identities=12%  Similarity=0.253  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHhhHHH
Q 010712          177 LESLRQEYHHCRGTYEY  193 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~  193 (503)
                      |..++..+.-++..|++
T Consensus       169 IP~le~tikyI~~~LdE  185 (223)
T 3a5c_G          169 IPGIRAQIRFIQQVLEQ  185 (223)
T ss_dssp             HHHHTHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHhH
Confidence            44444444444444443

>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}

Probab=83.05  E-value=4  Score=45.48  Aligned_cols=45  Identities=11%  Similarity=-0.012  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe  227 (503)
                      |++++++|+++|+.+++++++.+..       -++.+.-+.+|+.+++.+..
T Consensus       403 e~~kl~~E~~eL~~~i~~l~~iL~~-------~~~l~~~i~~EL~~i~~kyg  447 (716)
T 1zvu_A          403 EEMKIRGEQSELEKERDQLQGILAS-------ERKMNNLLKKELQADAQAYG  447 (716)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHhC
Confidence            4555555555555555544444433       33334444555555555543

>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V

Probab=83.01  E-value=4.9  Score=41.18  Aligned_cols=17  Identities=18%  Similarity=0.278  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHhhhhc
Q 010712           82 ELAAAQHELQILHGQIG   98 (503)
Q Consensus        82 eLa~lq~EL~~L~~qL~   98 (503)
                      .|+.+..++..|...+.
T Consensus         4 ~l~~~~~r~~el~~~~~   20 (354)
T 3d5a_X            4 KLDRLEEEYRELEALLS   20 (354)
T ss_dssp             HHHHHTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            33444444444444443

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=82.90  E-value=5.6  Score=30.28  Aligned_cols=39  Identities=13%  Similarity=0.181  Sum_probs=18.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          190 TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       190 ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      .+...+.++..+.+-...+.++|..|.++|.+|..|-..
T Consensus        21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~   59 (63)
T 2w6a_A           21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQ   59 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhh
Confidence            333333334444444444444555555555555555433

>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=82.85  E-value=1  Score=28.39  Aligned_cols=24  Identities=33%  Similarity=0.499  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           62 MQKLATENQRLAATHGTLRQELAA   85 (503)
Q Consensus        62 Iq~Le~enqrLa~e~~~LrqeLa~   85 (503)
                      |++|..+|.+|..++..|+-++++
T Consensus         2 irrlkqknarlkqeiaaleyeiaa   25 (28)
T 3ra3_B            2 IRRLKQKNARLKQEIAALEYEIAA   25 (28)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHH
Confidence            445555565555555555444443

>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1

Probab=82.62  E-value=4.6  Score=36.43  Aligned_cols=29  Identities=17%  Similarity=0.330  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQL  156 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L  156 (503)
                      |..|+..+..++++...+...+..+++.+
T Consensus        97 Le~E~~~~~~el~~~v~eae~ll~~v~~~  125 (151)
T 1yke_B           97 LQKKLVEVEDEKIEAIKKKEKLLRHVDSL  125 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444433

>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A

Probab=82.61  E-value=37  Score=32.94  Aligned_cols=168  Identities=12%  Similarity=0.122  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010712           63 QKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNL  142 (503)
Q Consensus        63 q~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL  142 (503)
                      ..|-.-+.++...+..++.+|...-+.+.  ..-|..++...+...+.+....+..+.|.+.   ...+|+....++.++
T Consensus        73 ~elG~~L~~i~~~~r~ie~~l~~~~~~~~--~~li~pL~~kie~d~K~v~~~~K~~~~e~k~---~~~~l~K~~~e~~kl  147 (253)
T 2ykt_A           73 KELGDVLFQMAEVHRQIQNQLEEMLKSFH--NELLTQLEQKVELDSRYLSAALKKYQTEQRS---KGDALDKCQAELKKL  147 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---hHhHHHHHHHHHHHH


Q ss_pred             HHHH----------HHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010712          143 VVAR----------EELIAKVHQLTQDLQRAHTDVQQI--PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK  210 (503)
Q Consensus       143 ~~er----------qeLe~qiq~L~~ELqrlk~elqqi--~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk  210 (503)
                      +.+.          ..+...++.+......++.-+.+.  ..+..|-...--=++.+..-++.+-.........+++...
T Consensus       148 ~KK~k~gk~~~~~~~~~~~~~e~v~~~~~~le~~~~~~lr~aL~EERrRycflv~~~~~v~~~~~~~h~~~~~~L~~~l~  227 (253)
T 2ykt_A          148 RKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLP  227 (253)
T ss_dssp             HHC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccc
Q 010712          211 NYITMATEVEKLRAELMNAPNVDRR  235 (503)
Q Consensus       211 ~L~sm~rEIekLraELekle~el~~  235 (503)
                      .+..+..+-.+|=..++.+...+++
T Consensus       228 ~w~~l~~~~~~lP~~se~lI~~~~~  252 (253)
T 2ykt_A          228 LWQQACADPSKIPERAVQLMQQVAS  252 (253)
T ss_dssp             HHHHTTCCCC---------------
T ss_pred             HHHHHhcChhcCChHHHHHHHHhhc

>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A

Probab=82.49  E-value=3.7  Score=37.53  Aligned_cols=24  Identities=8%  Similarity=0.093  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchH
Q 010712           79 LRQELAAAQHELQILHGQIGGMKS  102 (503)
Q Consensus        79 LrqeLa~lq~EL~~L~~qL~~lka  102 (503)
                      |.+.++.+...+..++..|.=+..
T Consensus        64 l~~~ld~l~~~~~~l~~~L~P~t~   87 (165)
T 1gs9_A           64 MDETMKELKAYKSELEEQLTPVAE   87 (165)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHhccchHH
Confidence            555666667777777777655443

>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}

Probab=82.39  E-value=3.3  Score=34.41  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010712          172 ALLSELESLRQEYHHCRGTYEYEKKFY  198 (503)
Q Consensus       172 ~l~~EIe~L~qELq~lR~ele~ekk~~  198 (503)
                      .++.+++.|..||+.+..+|...+..+
T Consensus        53 KL~Rk~DKl~~ele~l~~~l~~~k~~F   79 (93)
T 3sjb_C           53 KNNRKLDSLDKEINNLKDEIQSENKAF   79 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444443333

>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}

Probab=82.35  E-value=4.9  Score=30.09  Aligned_cols=31  Identities=19%  Similarity=0.134  Sum_probs=11.9

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010712          182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNY  212 (503)
Q Consensus       182 qELq~lR~ele~ekk~~~el~eqlqemEk~L  212 (503)
                      .|++.|+++.+.+++.+++.....++||+.+
T Consensus        17 DqV~eL~qe~k~m~k~lEeEqkARk~LE~~v   47 (56)
T 2w6b_A           17 DEVQELRQDNKKMKKSLEEEQRARKDLEKLV   47 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333433333334444433

>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P

Probab=82.33  E-value=30  Score=31.69  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          139 AQNLVVAREELIAKVHQLTQDLQR  162 (503)
Q Consensus       139 LqqL~~erqeLe~qiq~L~~ELqr  162 (503)
                      +.......+.++.++..++.+|..
T Consensus       119 y~~Ads~~~~lekKvn~aq~kLs~  142 (201)
T 3u0c_A          119 LKNADSKIKDLENKINQIQTRLSE  142 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhc
Confidence            333334444444444444444443

>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1

Probab=82.28  E-value=1.5  Score=41.61  Aligned_cols=25  Identities=12%  Similarity=0.246  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712           71 RLAATHGTLRQELAAAQHELQILHG   95 (503)
Q Consensus        71 rLa~e~~~LrqeLa~lq~EL~~L~~   95 (503)
                      ++..+++.++++|+.+++.+..+..
T Consensus        19 q~~~Ql~~~k~Ql~q~k~qy~sltG   43 (213)
T 1r8i_A           19 QMAQQLEQLKSQLETQKNMYESMAK   43 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            4444444455555555555444443

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=82.10  E-value=13  Score=28.57  Aligned_cols=50  Identities=14%  Similarity=0.102  Sum_probs=25.5

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       180 L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +.+.+..|..-+..+-....+.-+.+..++.++......+++-..+|.++
T Consensus        17 Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA   66 (68)
T 1n7s_B           17 LENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333334444445555566666666666666666666554

>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}

Probab=81.87  E-value=35  Score=32.15  Aligned_cols=24  Identities=13%  Similarity=0.048  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhc
Q 010712           75 THGTLRQELAAAQHELQILHGQIG   98 (503)
Q Consensus        75 e~~~LrqeLa~lq~EL~~L~~qL~   98 (503)
                      +...+.+++..++++-..+..+|.
T Consensus        57 ~~~~~~~~I~~lE~~aD~i~~~i~   80 (227)
T 3l39_A           57 ERADYYKQIKDMEREGDRLTHLIF   80 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555543

>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1

Probab=81.76  E-value=5.2  Score=30.31  Aligned_cols=51  Identities=14%  Similarity=0.111  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       173 l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle  230 (503)
                      +...|..+..++.+++.+++       ....+.+++-+-...+..||..-+.-|+--+
T Consensus         5 ~q~~i~~le~el~~~r~e~~-------~q~~eYq~LlniK~~Le~EIatYRkLLEgEe   55 (59)
T 1gk6_A            5 LEDKVEELLSKNYHLENEVA-------RLKKLVGDLLNVKMALDIEIATYRKLLEGEE   55 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHccCc
Confidence            34445555555555555543       3334445555566677888888887776543

>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*

Probab=81.49  E-value=9  Score=43.03  Aligned_cols=39  Identities=10%  Similarity=-0.096  Sum_probs=17.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          190 TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       190 ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      |++.+++++.+++.-+...+....-+..|+.+++.+..+
T Consensus       704 E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~~yg~  742 (767)
T 2xkj_E          704 EQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGD  742 (767)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Confidence            333333334444443343333444455555655555543

>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1

Probab=81.45  E-value=10  Score=33.39  Aligned_cols=7  Identities=14%  Similarity=0.368  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 010712           87 QHELQIL   93 (503)
Q Consensus        87 q~EL~~L   93 (503)
                      .++|+.|
T Consensus        70 ~kqIe~L   76 (132)
T 1ykh_B           70 TRQINKL   76 (132)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}

Probab=81.44  E-value=12  Score=33.71  Aligned_cols=14  Identities=29%  Similarity=0.582  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHH
Q 010712          109 RNLTEKIAKMEAEL  122 (503)
Q Consensus       109 ~eL~eki~kLEaEL  122 (503)
                      ++|.+++..++.|+
T Consensus        32 ~~l~~~i~q~d~el   45 (150)
T 4dci_A           32 REISNGIANADQQL   45 (150)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444433

>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P

Probab=81.44  E-value=32  Score=31.47  Aligned_cols=43  Identities=9%  Similarity=0.175  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI  170 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi  170 (503)
                      +..|.+.+-..+++...........++.++.++..++.++.++
T Consensus       101 aL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L  143 (201)
T 3u0c_A          101 LLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSEL  143 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3334444444555555555666666666666666666666554

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=81.39  E-value=12  Score=28.83  Aligned_cols=39  Identities=18%  Similarity=0.219  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       191 le~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +..+-....+.-+.+..++.++......+++-..+|.++
T Consensus        26 F~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA   64 (69)
T 3b5n_B           26 FNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKA   64 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444455555556666666666655555554

>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}

Probab=81.30  E-value=23  Score=29.73  Aligned_cols=23  Identities=9%  Similarity=0.127  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712          205 LQVMEKNYITMATEVEKLRAELM  227 (503)
Q Consensus       205 lqemEk~L~sm~rEIekLraELe  227 (503)
                      +++.+.-++.....|.+++.-.+
T Consensus        76 IKa~kvL~~rns~DI~~ire~fq   98 (101)
T 4aj5_1           76 IKATKVLMEKNSMDIMKIREYFQ   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHH
Confidence            33333334444555555555443

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=81.29  E-value=18  Score=40.84  Aligned_cols=12  Identities=0%  Similarity=0.149  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHh
Q 010712          217 TEVEKLRAELMN  228 (503)
Q Consensus       217 rEIekLraELek  228 (503)
                      ..++.+...|..
T Consensus       565 ~a~~~l~~~i~~  576 (854)
T 1qvr_A          565 EAIRAVADAIRR  576 (854)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            334444444443

>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}

Probab=81.27  E-value=23  Score=31.39  Aligned_cols=100  Identities=17%  Similarity=0.151  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH------Hhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------
Q 010712           74 ATHGTLRQELAAAQHELQI------LHGQIGG-MKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE--------  138 (503)
Q Consensus        74 ~e~~~LrqeLa~lq~EL~~------L~~qL~~-lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraE--------  138 (503)
                      ++++.|+..|..+..+|+.      --..|.. ++--.+.+++-+..+....+.++......-..|...+.-        
T Consensus         6 ~Ele~lr~aL~~AE~eLe~~~~~w~~p~~Lq~wLq~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~a   85 (136)
T 3ter_A            6 TEMENLRVQLEEAERRLEANSNGSQAPLALQPLLRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLA   85 (136)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeee


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 010712          139 ------AQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL  173 (503)
Q Consensus       139 ------LqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l  173 (503)
                            ++++...+.++...+.+++.++..-....++|+.+
T Consensus        86 Hs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~L  126 (136)
T 3ter_A           86 TGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESL  126 (136)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=81.00  E-value=6.6  Score=34.11  Aligned_cols=10  Identities=20%  Similarity=-0.050  Sum_probs=4.2

Q ss_pred             HHhccccccc
Q 010712          226 LMNAPNVDRR  235 (503)
Q Consensus       226 Lekle~el~~  235 (503)
                      +.+.....|.
T Consensus        55 ~~~~~~~~W~   64 (125)
T 1joc_A           55 HTQALNRKWA   64 (125)
T ss_dssp             HHHHHHCCCC
T ss_pred             ccccCCCccc
Confidence            3333334564

>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1

Probab=80.96  E-value=26  Score=33.22  Aligned_cols=11  Identities=0%  Similarity=-0.028  Sum_probs=4.5

Q ss_pred             HHHHHHhhhhc
Q 010712           88 HELQILHGQIG   98 (503)
Q Consensus        88 ~EL~~L~~qL~   98 (503)
                      .+|-..+.+|.
T Consensus        46 ~~ipdA~~rL~   56 (214)
T 1kmi_Z           46 EAIPDARDRLY   56 (214)
T ss_dssp             TTHHHHHHHTT
T ss_pred             HHhhHHHHHHH
Confidence            33444444443

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=80.85  E-value=1.4  Score=28.69  Aligned_cols=28  Identities=32%  Similarity=0.453  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccchH
Q 010712           75 THGTLRQELAAAQHELQILHGQIGGMKS  102 (503)
Q Consensus        75 e~~~LrqeLa~lq~EL~~L~~qL~~lka  102 (503)
                      ++..|++++++++.||..|+-+|..++.
T Consensus         3 eiaalkqeiaalkkeiaalkfeiaalkq   30 (33)
T 4dzn_A            3 EIAALKQEIAALKKEIAALKFEIAALKQ   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHc

>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A

Probab=80.67  E-value=28  Score=31.66  Aligned_cols=13  Identities=23%  Similarity=0.143  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHH
Q 010712          171 PALLSELESLRQE  183 (503)
Q Consensus       171 ~~l~~EIe~L~qE  183 (503)
                      ++++..+.-.-.+
T Consensus       131 EelR~kl~P~~ee  143 (165)
T 1gs9_A          131 EELRVRLASHLRK  143 (165)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444333333

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=80.42  E-value=3.7  Score=28.06  Aligned_cols=31  Identities=16%  Similarity=0.245  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           54 KIASQHVEMQKLATENQRLAATHGTLRQELA   84 (503)
Q Consensus        54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa   84 (503)
                      ++.++++++..|..++..|+.++..|+.-|.
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~   32 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA   32 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            3455566666666666666666666654443

>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1

Probab=80.37  E-value=17  Score=34.02  Aligned_cols=150  Identities=11%  Similarity=0.007  Sum_probs=0.0

Q ss_pred             HHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 010712           86 AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-TAEPVKLEFQKSKTEAQNLVVAR---EELIAKVHQLTQDLQ  161 (503)
Q Consensus        86 lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~-~le~Lk~ELeqLraELqqL~~er---qeLe~qiq~L~~ELq  161 (503)
                      ...+|..++.++..+....+..+....+-+...+.++. ++.....+++.++.++...-..+   ++....--.....+-
T Consensus         5 ~~~~L~~l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l   84 (235)
T 1sum_B            5 LNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGI   84 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712          162 RAHTDVQQIPALLSELESLRQEYHH-----CRGTYEYEKKFYNDHLES-LQVMEKNYITMATEVEKLRAELMNAPNVDRR  235 (503)
Q Consensus       162 rlk~elqqi~~l~~EIe~L~qELq~-----lR~ele~ekk~~~el~eq-lqemEk~L~sm~rEIekLraELekle~el~~  235 (503)
                      ++..++++|.+.-..|.++-..+..     ...++...-+...+..+. +..+.+.-..+..++.++..+++++..++++
T Consensus        85 ~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~l~~  164 (235)
T 1sum_B           85 RVAELIENIADKCHDIAKNVLELMEEPPLKPLEDIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVRE  164 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCCCSCCSHHHHHHHHHHHHHHHHHHHHHSCCHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH

>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A

Probab=80.30  E-value=17  Score=34.33  Aligned_cols=70  Identities=13%  Similarity=0.195  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAE  121 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaE  121 (503)
                      ...-|.+|++++.+|..-+....+-...+..++-.|...+.+|..|+.++    ..++.++...+.+|..|+.+
T Consensus        79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v----~~ld~~vt~~et~Isal~~D  148 (242)
T 3c9i_A           79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNV----SALDGRVTTAENNISALQAD  148 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             eecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhh----hhhcccccccccchhhhhhh

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=80.29  E-value=13  Score=29.24  Aligned_cols=46  Identities=13%  Similarity=0.065  Sum_probs=24.4

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712          186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN  231 (503)
Q Consensus       186 ~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~  231 (503)
                      .|..-+..+-....+.-+.+..++.++......+++-..+|.++.+
T Consensus        21 eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~   66 (77)
T 1jth_B           21 ELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK   66 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333344444555556666666666666666666665543

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=80.26  E-value=14  Score=28.31  Aligned_cols=54  Identities=11%  Similarity=0.190  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle  230 (503)
                      |..+.+.+..|..-+..+-....+.-+.+..++.++......+++-..+|.++.
T Consensus        11 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~   64 (65)
T 1gl2_B           11 IRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA   64 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344444444444444444444555556666667777777777777777766653

>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}

Probab=80.25  E-value=13  Score=34.98  Aligned_cols=155  Identities=10%  Similarity=0.091  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-HHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAAT--------HGTLRQELAAAQHELQ-ILHGQIGGMKSERELQMRNLTEKIAKME  119 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e--------~~~LrqeLa~lq~EL~-~L~~qL~~lkae~E~el~eL~eki~kLE  119 (503)
                      ...++-++.+..  ..|..++..+..+        +..|+++|.-...++. .+....+.++..+...+.++..++.-+-
T Consensus        23 ~~a~~~v~~l~~--sel~qqL~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~~~lr~~l~kd~ee~r~~l~py~  100 (216)
T 2lem_A           23 DSGRDYVSQFES--SSLGQQLNLNLLENWDTLGSTVSQLQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPYL  100 (216)
T ss_dssp             HHHHHHHHHHHH--HHHHHHHHHHHHHTTTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHhh--hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhccHHHHHHhhhHHH


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHH
Q 010712          120 AELKTAEPVKLEFQKSKTEAQNLVVAREELIA------------KVHQLTQDLQRAHTDVQQ-----IPALLSELESLRQ  182 (503)
Q Consensus       120 aEL~~le~Lk~ELeqLraELqqL~~erqeLe~------------qiq~L~~ELqrlk~elqq-----i~~l~~EIe~L~q  182 (503)
                      .++..  .+...++.++..|.-...++.+-..            -.++|...|.....+++.     +.+++.+|+.--.
T Consensus       101 ~el~~--~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~kl~~~~e~lk~~l~P~~ee~~~kl~~~le  178 (216)
T 2lem_A          101 DEFQK--KWKEDVELYRQKASPQGAELQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMRESLAQRLA  178 (216)
T ss_dssp             CHHHH--HHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSCCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH


Q ss_pred             HHH----------HHHhhHHHHHHHHHHHHHHHHH
Q 010712          183 EYH----------HCRGTYEYEKKFYNDHLESLQV  207 (503)
Q Consensus       183 ELq----------~lR~ele~ekk~~~el~eqlqe  207 (503)
                      +|.          ++...++.++..+.-..+.+++
T Consensus       179 eL~~~p~~~e~~~ki~~~~e~Lr~~l~P~~edlk~  213 (216)
T 2lem_A          179 ELKSNPTLNEYHSSAKSHLKSLGEKARPALEDLRH  213 (216)
T ss_dssp             HHHHCCCCCCCCCCSSSHHHHHHHTSCTTTHHHHH
T ss_pred             HHhCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHh

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=80.22  E-value=2.9  Score=48.52  Aligned_cols=148  Identities=10%  Similarity=0.036  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010712           54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQ  133 (503)
Q Consensus        54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELe  133 (503)
                      .+..+...-..|+...++....+...-..++.+++..++...........++.....|..  ...-..+..++.+.++.+
T Consensus       844 ~~~~L~~~W~~L~~ae~er~~~L~~el~RlerL~~la~kf~~ka~~~e~Wl~eke~~l~s--~d~g~dl~~vqallkKhe  921 (995)
T 2ycu_A          844 TPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGS--NETGDSITAVQAKLKNLE  921 (995)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGGCCCCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccCHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhh-hHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712          134 KSKTEAQNLVVARE-ELIAKVHQLTQDLQRAHTDVQQ-IPAL-LSELESLRQEYHHCRGTYEYEKKFYNDHLE  203 (503)
Q Consensus       134 qLraELqqL~~erq-eLe~qiq~L~~ELqrlk~elqq-i~~l-~~EIe~L~qELq~lR~ele~ekk~~~el~e  203 (503)
                      .+.++|........ +|....++|.++-.....++.+ ...+ ..+++.|+.-+++-++.|+...+..+.+.+
T Consensus       922 a~e~dl~a~e~ri~~~l~~~a~~L~~~~y~~~~~I~~R~~~l~~~~W~~L~~~a~~Rr~~L~~~~~~~q~~~~  994 (995)
T 2ycu_A          922 AFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED  994 (995)
T ss_dssp             HHHHHHHHTTTCSCSSHHHHHHHHTTTHHHHHHHHHHHHTHHHHHHHHHHHSSSCCCC---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc

>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}

Probab=80.19  E-value=52  Score=34.31  Aligned_cols=113  Identities=9%  Similarity=0.079  Sum_probs=0.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHH
Q 010712          118 MEAELKTAEPVKLEFQKSKTEAQNLVVAREE----LIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEY  193 (503)
Q Consensus       118 LEaEL~~le~Lk~ELeqLraELqqL~~erqe----Le~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~  193 (503)
                      |..+++.-.......+.....|.++.....+    |...++.+-.-++.+...=.....-..-|+..+.=.+++....+.
T Consensus         7 l~~q~r~~~s~~~~~~~~~~~l~~le~~~~~~~~gl~~~l~~ff~alq~la~~P~~~~~R~~vl~~a~~La~~~n~~~~~   86 (463)
T 2d4y_A            7 ITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQY   86 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712          194 EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP  230 (503)
Q Consensus       194 ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle  230 (503)
                      ++.....+..+++..-+++..+.++|.+|..+|.+.+
T Consensus        87 L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~  123 (463)
T 2d4y_A           87 LRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMT  123 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh

>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}

Probab=80.09  E-value=31  Score=32.78  Aligned_cols=89  Identities=13%  Similarity=0.152  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH----
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK----  123 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~----  123 (503)
                      +..|+.+|+.+..++..|..+..|+.++++.+++....-..++...-.+-         -+++|..-++.|+.-+.    
T Consensus        61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~---------~~~~LLpVlDnlerAl~~~~~  131 (213)
T 4ani_A           61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQS---------LASDLLPVLDNFERALKIETD  131 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH---------HHHHHHHHHHHHHHHHSCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhHHHHHHHHHHHhccc


Q ss_pred             --HHhHHHHHHHHHHHHHHHHHHH
Q 010712          124 --TAEPVKLEFQKSKTEAQNLVVA  145 (503)
Q Consensus       124 --~le~Lk~ELeqLraELqqL~~e  145 (503)
                        .+..|..=++.+..+|.++...
T Consensus       132 ~~~~~~l~eGvemi~k~l~~~L~k  155 (213)
T 4ani_A          132 NEQAKSILQGMEMVYRSLVDALKK  155 (213)
T ss_dssp             CSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHH

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=80.07  E-value=18  Score=40.78  Aligned_cols=171  Identities=12%  Similarity=0.084  Sum_probs=0.0

Q ss_pred             CCChHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 010712           45 MPPPEVMEQKIASQHVEM---------QKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKI  115 (503)
Q Consensus        45 ~p~p~~LEqeIe~~~~EI---------q~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki  115 (503)
                      +|....+.+-|..+....         ........++......-+.-...+..-+......+.-.....-.++.+|..++
T Consensus       331 ~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~  410 (854)
T 1qvr_A          331 EPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKK  410 (854)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHH


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010712          116 AKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEK  195 (503)
Q Consensus       116 ~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ek  195 (503)
                      ..++.++..+..-+..  .-...+.++..+...+..+++.+...-+..+..++++..++.+++.++.+++..... ....
T Consensus       411 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  487 (854)
T 1qvr_A          411 LQLEIEREALKKEKDP--DSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQ-YDLN  487 (854)
T ss_dssp             HHHHHHHHHHSSCSSH--HHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TCHH
T ss_pred             HHHHHHHHHHHhcccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc-ccHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 010712          196 KFYNDHLESLQVMEKNYITMATE  218 (503)
Q Consensus       196 k~~~el~eqlqemEk~L~sm~rE  218 (503)
                      +..+-....+.++++++..++..
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~  510 (854)
T 1qvr_A          488 RAAELRYGELPKLEAEVEALSEK  510 (854)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHHHHHhh

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	503
d1u2ma_	143	f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Esc	7e-04

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	503
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	97.72
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	97.32
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	97.23
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	97.05
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	97.04
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	97.03
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	96.72
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	96.69
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	96.64
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	96.57
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	96.45
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	96.43
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	96.32
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	96.29
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	96.27
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	96.19
d1gqea_	362	Polypeptide chain release factor 2 (RF2) {Escheric	95.23
d1gqea_	362	Polypeptide chain release factor 2 (RF2) {Escheric	94.93
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.57
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.54
d1owaa_	156	Spectrin alpha chain {Human (Homo sapiens) [TaxId:	92.97
d2spca_	107	Spectrin alpha chain {Drosophila sp. [TaxId: 7242]	92.55
d1bg1a1	186	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	92.45
d2etda1	149	Hypothetical protein TM0961 {Thermotoga maritima [	91.64
d1wp1a_	456	Outer membrane protein OprM {Pseudomonas aeruginos	91.53
d1bf5a1	181	STAT-1, coiled coil domain {Human (Homo sapiens) [	91.48
d1bjta_	760	DNA topoisomerase II, C-terminal fragment (residue	90.42
d1y2oa1	248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	89.74
d1ez3a_	124	Syntaxin 1A N-terminal domain {Rat (Rattus norvegi	89.46
d1bg1a1	186	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	88.01
d1bf5a1	181	STAT-1, coiled coil domain {Human (Homo sapiens) [	87.74
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	86.96
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	86.48
d1hs7a_	97	Vam3p N-terminal domain {Baker's yeast (Saccharomy	85.8
d1ykhb1	129	RNA polymerase II holoenzyme component SRB7 (MED21	84.74
d1t72a_	215	Phosphate transport system protein PhoU {Aquifex a	82.33
d1bjta_	760	DNA topoisomerase II, C-terminal fragment (residue	81.92
d1cuna2	104	Spectrin alpha chain {Chicken (Gallus gallus) [Tax	81.13
d1k4ta1	72	Eukaryotic DNA topoisomerase I, dispensable insert	81.03
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	80.78

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.72  E-value=0.0022  Score=54.05  Aligned_cols=53  Identities=8%  Similarity=-0.002  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      ++..+...+..+...++.++..+..+...+..+...+..+...+.++..+...
T Consensus       131 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ek~~  183 (185)
T d2ap3a1         131 SEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQD  183 (185)
T ss_dssp             HHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34444444444444455555455555555555555555555555555444433

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.32  E-value=0.0056  Score=51.41  Aligned_cols=26  Identities=12%  Similarity=0.185  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712           74 ATHGTLRQELAAAQHELQILHGQIGG   99 (503)
Q Consensus        74 ~e~~~LrqeLa~lq~EL~~L~~qL~~   99 (503)
                      ..+..+...|..+..++..+...+..
T Consensus        22 ~~~~~~~~k~~~~e~~~~~~~~~~~~   47 (185)
T d2ap3a1          22 EPIKTVGKKIAELDEKKKKLTEDVNS   47 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555666666666555544

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.038  Score=50.85  Aligned_cols=17  Identities=0%  Similarity=0.018  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHhccc
Q 010712          215 MATEVEKLRAELMNAPN  231 (503)
Q Consensus       215 m~rEIekLraELekle~  231 (503)
                      +...++.|...|+.+..
T Consensus       245 ~~~~~~~l~~~~~~id~  261 (288)
T d2efla1         245 IGKCLDGIVKAAESIDQ  261 (288)
T ss_dssp             HHHHHHHHHHHHHTCCH
T ss_pred             HHHHHHHHHHHHHHCCH
Confidence            34445555555555443

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.05  E-value=0.089  Score=46.35  Aligned_cols=34  Identities=6%  Similarity=0.113  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELA   84 (503)
Q Consensus        51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa   84 (503)
                      .+++++....+++.++....+|......+...+.
T Consensus        10 ~D~~fe~~~~~~~~~e~~l~~l~k~~~~~~~~~~   43 (217)
T d1urua_          10 ADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVR   43 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555555555555555554444333

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.055  Score=49.69  Aligned_cols=11  Identities=9%  Similarity=0.136  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHH
Q 010712          212 YITMATEVEKL  222 (503)
Q Consensus       212 L~sm~rEIekL  222 (503)
                      +..+...++.+
T Consensus       249 ~~~l~~~~~~i  259 (288)
T d2efla1         249 LDGIVKAAESI  259 (288)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHC
Confidence            33444444433

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.054  Score=50.28  Aligned_cols=15  Identities=13%  Similarity=0.273  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHhcc
Q 010712          216 ATEVEKLRAELMNAP  230 (503)
Q Consensus       216 ~rEIekLraELekle  230 (503)
                      ..+...|+.++++|+
T Consensus       283 ~~~~~~l~~ei~~Lk  297 (300)
T d1f5na1         283 QKESRIMKNEIQDLQ  297 (300)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444443

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.19  Score=45.80  Aligned_cols=17  Identities=12%  Similarity=0.176  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010712           61 EMQKLATENQRLAATHG   77 (503)
Q Consensus        61 EIq~Le~enqrLa~e~~   77 (503)
                      +|..+..++..++.++.
T Consensus        18 ~~~~~~~eRa~iE~~Ya   34 (279)
T d2efka1          18 RYVKFVKERTEVEQAYA   34 (279)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444443

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.22  Score=45.33  Aligned_cols=11  Identities=9%  Similarity=0.193  Sum_probs=4.6

Q ss_pred             HHHHHHHHHhc
Q 010712          219 VEKLRAELMNA  229 (503)
Q Consensus       219 IekLraELekl  229 (503)
                      ++.|...++.+
T Consensus       240 ~~~l~~~~~~i  250 (279)
T d2efka1         240 LEGMKVAANAV  250 (279)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHC
Confidence            34444444443

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.092  Score=45.63  Aligned_cols=19  Identities=32%  Similarity=0.494  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHhhHHHHH
Q 010712          177 LESLRQEYHHCRGTYEYEK  195 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ek  195 (503)
                      |..++.+++.++..++.+.
T Consensus       140 l~~ae~~~~~a~~~fe~~~  158 (200)
T d1i4da_         140 LESAQATFQAHRDKYEKLR  158 (200)
T ss_dssp             -CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4445555555555554443

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.2  Score=43.35  Aligned_cols=21  Identities=19%  Similarity=0.476  Sum_probs=10.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhh
Q 010712          170 IPALLSELESLRQEYHHCRGT  190 (503)
Q Consensus       170 i~~l~~EIe~L~qELq~lR~e  190 (503)
                      +.....+++..+.+.+.++.+
T Consensus       140 l~~ae~~~~~a~~~fe~~~~~  160 (200)
T d1i4da_         140 LESAQATFQAHRDKYEKLRGD  160 (200)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555554444

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.45  E-value=0.0079  Score=49.32  Aligned_cols=36  Identities=17%  Similarity=0.316  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA  163 (503)
Q Consensus       128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrl  163 (503)
                      +..++..++.+++.+...++.|+.++++...-|..+
T Consensus         6 ~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL   41 (107)
T d1fxka_           6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKALEEL   41 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555544444433

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.11  Score=47.96  Aligned_cols=19  Identities=21%  Similarity=0.455  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 010712          208 MEKNYITMATEVEKLRAEL  226 (503)
Q Consensus       208 mEk~L~sm~rEIekLraEL  226 (503)
                      ++.....|.++|++|+.+|
T Consensus       282 ~~~~~~~l~~ei~~Lk~~l  300 (300)
T d1f5na1         282 FQKESRIMKNEIQDLQTKM  300 (300)
T ss_dssp             CHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            4555667777777777653

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.32  E-value=0.02  Score=46.78  Aligned_cols=27  Identities=4%  Similarity=0.161  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712          202 LESLQVMEKNYITMATEVEKLRAELMN  228 (503)
Q Consensus       202 ~eqlqemEk~L~sm~rEIekLraELek  228 (503)
                      ..+++.+++++..+..++++++.+|.+
T Consensus        78 ~~~i~~l~~q~~~l~~~l~~~~~~l~~  104 (107)
T d1fxka_          78 QLREKTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444443

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.29  E-value=0.026  Score=47.43  Aligned_cols=25  Identities=16%  Similarity=0.304  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          198 YNDHLESLQVMEKNYITMATEVEKL  222 (503)
Q Consensus       198 ~~el~eqlqemEk~L~sm~rEIekL  222 (503)
                      ++.+.++++.++.++..+..+++++
T Consensus       104 ~~~l~~~~~~~~~~i~~l~~~~~~l  128 (133)
T d1fxkc_         104 LQKMGENLRAITDIMMKLSPQAEEL  128 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444333

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.27  E-value=0.028  Score=47.25  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712          192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA  229 (503)
Q Consensus       192 e~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl  229 (503)
                      +.+++.+..+++.++.+.+++..+...+..+..+++++
T Consensus        91 ~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l  128 (133)
T d1fxkc_          91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL  128 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555555555555555544

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.19  E-value=0.13  Score=45.30  Aligned_cols=51  Identities=6%  Similarity=-0.042  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712           49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG   99 (503)
Q Consensus        49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~   99 (503)
                      ..+++++..++..+.+|......+...+..+-.-...+-..+..+-.....
T Consensus        15 e~~~~~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~   65 (217)
T d1urua_          15 DDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWS   65 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            567888888888888888888888877777655555555556555444433

>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.097  Score=51.54  Aligned_cols=16  Identities=13%  Similarity=0.297  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHhhhhc
Q 010712           83 LAAAQHELQILHGQIG   98 (503)
Q Consensus        83 La~lq~EL~~L~~qL~   98 (503)
                      ++.++.++..|+.++.
T Consensus        24 ld~kk~Rl~ELE~~ls   39 (362)
T d1gqea_          24 YDAKKERLEEVNAELE   39 (362)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            3444444455544443

>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.12  Score=50.75  Aligned_cols=20  Identities=15%  Similarity=0.170  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHhccccc
Q 010712          214 TMATEVEKLRAELMNAPNVD  233 (503)
Q Consensus       214 sm~rEIekLraELekle~el  233 (503)
                      .+..++++|..++++++..+
T Consensus        95 e~~~~l~~l~~~l~~le~~l  114 (362)
T d1gqea_          95 EAVAELDALEEKLAQLEFRR  114 (362)
T ss_dssp             HHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHhhhhhHHHHhh
Confidence            34455566666666665544

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.57  E-value=0.12  Score=51.24  Aligned_cols=18  Identities=17%  Similarity=0.318  Sum_probs=7.5

Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 010712          169 QIPALLSELESLRQEYHH  186 (503)
Q Consensus       169 qi~~l~~EIe~L~qELq~  186 (503)
                      ++..++.+|+.++.+++.
T Consensus       314 ~i~~Lk~~Le~lr~~le~  331 (387)
T d1qvra2         314 KLREAQHRLDEVRREIEL  331 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333344444444444433

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.54  E-value=0.23  Score=49.12  Aligned_cols=18  Identities=17%  Similarity=0.126  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 010712           76 HGTLRQELAAAQHELQIL   93 (503)
Q Consensus        76 ~~~LrqeLa~lq~EL~~L   93 (503)
                      ++.++++|..++.++..|
T Consensus       255 l~~ler~I~qLe~E~~aL  272 (387)
T d1qvra2         255 IDALERKKLQLEIEREAL  272 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333334444444444443

>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.4  Score=39.96  Aligned_cols=17  Identities=6%  Similarity=-0.089  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010712          211 NYITMATEVEKLRAELM  227 (503)
Q Consensus       211 ~L~sm~rEIekLraELe  227 (503)
                      .+..+....+.|...++
T Consensus       132 ~l~~l~~~W~~L~~~~~  148 (156)
T d1owaa_         132 HIEELRHLWDLLLELTL  148 (156)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444444333

>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Drosophila sp. [TaxId: 7242]

Probab=92.55  E-value=1.3  Score=34.08  Aligned_cols=17  Identities=12%  Similarity=0.169  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHh
Q 010712          212 YITMATEVEKLRAELMN  228 (503)
Q Consensus       212 L~sm~rEIekLraELek  228 (503)
                      +..+....+.|...+.+
T Consensus        84 ~~~l~~~w~~L~~~~~~  100 (107)
T d2spca_          84 RKQVLERWRHLKEGLIE  100 (107)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33334444444443333

>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: STAT
family: STAT
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.45  E-value=0.97  Score=40.09  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLAA   74 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa~   74 (503)
                      .|+++|+.+...++.++.+.+.|+.
T Consensus         8 ei~~~v~~l~~~~q~~e~~ik~Le~   32 (186)
T d1bg1a1           8 MLEQHLQDVRKRVQDLEQKMKVVEN   32 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666655555553

>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: LemA-like
family: LemA-like
domain: Hypothetical protein TM0961
species: Thermotoga maritima [TaxId: 2336]

Probab=91.64  E-value=2.2  Score=35.90  Aligned_cols=23  Identities=17%  Similarity=0.262  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHH
Q 010712          177 LESLRQEYHHCRGTYEYEKKFYN  199 (503)
Q Consensus       177 Ie~L~qELq~lR~ele~ekk~~~  199 (503)
                      +..|+.++..++..|...+..+.
T Consensus        93 ~~~l~~~l~~~E~~Ia~aR~~YN  115 (149)
T d2etda1          93 FRQLMDELAGTENRIAVARRDYN  115 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444433333

>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: Outer membrane efflux proteins (OEP)
superfamily: Outer membrane efflux proteins (OEP)
family: Outer membrane efflux proteins (OEP)
domain: Outer membrane protein OprM
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.53  E-value=6.2  Score=37.77  Aligned_cols=18  Identities=11%  Similarity=0.126  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 010712           79 LRQELAAAQHELQILHGQ   96 (503)
Q Consensus        79 LrqeLa~lq~EL~~L~~q   96 (503)
                      .++.+..+++.++.++..
T Consensus       171 a~~~~~~~~~~~~~~~~~  188 (456)
T d1wp1a_         171 DQAQLQLTKDTLGTYQKS  188 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333444444444444333

>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: STAT-like
superfamily: STAT
family: STAT
domain: STAT-1, coiled coil domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=4.1  Score=35.63  Aligned_cols=24  Identities=13%  Similarity=0.199  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           50 VMEQKIASQHVEMQKLATENQRLA   73 (503)
Q Consensus        50 ~LEqeIe~~~~EIq~Le~enqrLa   73 (503)
                      .|+.+|..+...++.++.+.+.|+
T Consensus         6 ei~~~v~~l~~~vq~~e~~ik~Le   29 (181)
T d1bf5a1           6 ELDSKVRNVKDKVMCIEHEIKSLE   29 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555555555555555544444

>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.42  E-value=0.19  Score=53.99  Aligned_cols=27  Identities=15%  Similarity=0.167  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712           71 RLAATHGTLRQELAAAQHELQILHGQI   97 (503)
Q Consensus        71 rLa~e~~~LrqeLa~lq~EL~~L~~qL   97 (503)
                      |.+..+..|+.+|..++..++-++.-|
T Consensus       590 Rk~~~l~~l~~el~~l~~k~rFI~~vi  616 (760)
T d1bjta_         590 RKDHMSERLQWEVEKYSFQVKFIKMII  616 (760)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence            344445556666666666655554443

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.74  E-value=4.9  Score=35.83  Aligned_cols=13  Identities=8%  Similarity=0.020  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHH
Q 010712          195 KKFYNDHLESLQV  207 (503)
Q Consensus       195 kk~~~el~eqlqe  207 (503)
                      ++.+..+.+.+..
T Consensus       191 rkr~~~lv~~l~~  203 (248)
T d1y2oa1         191 RRRFCFLVEKQCA  203 (248)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3334433333333

>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 1A N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.46  E-value=4.3  Score=32.63  Aligned_cols=8  Identities=13%  Similarity=0.194  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010712           78 TLRQELAA   85 (503)
Q Consensus        78 ~LrqeLa~   85 (503)
                      .++.+|..
T Consensus        14 ~Ir~~I~~   21 (124)
T d1ez3a_          14 EIRGFIDK   21 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: STAT
family: STAT
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.01  E-value=8  Score=33.84  Aligned_cols=24  Identities=17%  Similarity=0.046  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHH
Q 010712          171 PALLSELESLRQEYHHCRGTYEYE  194 (503)
Q Consensus       171 ~~l~~EIe~L~qELq~lR~ele~e  194 (503)
                      ..+..-.+.+-.-+-.+|..++.+
T Consensus       126 DqLQ~W~e~lAe~i~q~Rqqlk~l  149 (186)
T d1bg1a1         126 DRLENWITSLAESQLQTRQQIKKL  149 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444433

>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: STAT-like
superfamily: STAT
family: STAT
domain: STAT-1, coiled coil domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.74  E-value=8.1  Score=33.63  Aligned_cols=26  Identities=8%  Similarity=0.081  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010712          171 PALLSELESLRQEYHHCRGTYEYEKK  196 (503)
Q Consensus       171 ~~l~~EIe~L~qELq~lR~ele~ekk  196 (503)
                      ..+..-.+.+-.-+-.+|..++.+..
T Consensus       122 dqLQ~W~e~lae~l~q~rqqlkkl~e  147 (181)
T d1bf5a1         122 DQLQNWFTIVAESLQQVRQQLKKLEE  147 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445454455555555544433

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.96  E-value=1.1  Score=34.87  Aligned_cols=17  Identities=24%  Similarity=0.399  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 010712          106 LQMRNLTEKIAKMEAEL  122 (503)
Q Consensus       106 ~el~eL~eki~kLEaEL  122 (503)
                      ..+.+..+-|..|+-|+
T Consensus        38 ~~leEA~ell~qMelEv   54 (89)
T d1vcsa1          38 KQLEEARELLEQMDLEV   54 (89)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHH
Confidence            33333333333433333

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.48  E-value=11  Score=33.70  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=19.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712           48 PEVMEQKIASQHVEMQKLATENQRLAATHGTL   79 (503)
Q Consensus        48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~L   79 (503)
                      +..+|+++..++..|++|......+......+
T Consensus        18 l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~   49 (268)
T d2elba1          18 LGVFEEDATAISNYMNQLYQAMHRIYDAQNEL   49 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777777777766666555555444443

>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vam3p N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.80  E-value=4.7  Score=31.54  Aligned_cols=69  Identities=10%  Similarity=0.164  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhh------HHHHHHHH-HHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712          151 AKVHQLTQDLQRAHTDVQQI------PALLSELE-SLRQEYHHCRGTYEYEK--KFYNDHLESLQVMEKNYITMATEV  219 (503)
Q Consensus       151 ~qiq~L~~ELqrlk~elqqi------~~l~~EIe-~L~qELq~lR~ele~ek--k~~~el~eqlqemEk~L~sm~rEI  219 (503)
                      ..+..|.+.++-|+.+++.|      ..++..|+ ++--++..++..++..-  ..........+.+++++..+....
T Consensus        10 ~ll~tL~~~i~lLkk~~~kiGT~rD~~~LR~kIetelIP~~~~~~~~i~~~~~l~~~dK~~~DF~~L~~~l~~l~~~Y   87 (97)
T d1hs7a_          10 NLIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSY   87 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHhhhhhHHHHHHHHHhccCcccCchHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444443      23444444 44445555554444311  122233334444444444444433

>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Mediator hinge subcomplex-like
superfamily: Mediator hinge subcomplex-like
family: CSE2-like
domain: RNA polymerase II holoenzyme component SRB7 (MED21)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.74  E-value=3  Score=34.61  Aligned_cols=6  Identities=17%  Similarity=0.086  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 010712          135 SKTEAQ  140 (503)
Q Consensus       135 LraELq  140 (503)
                      +..+++
T Consensus       103 ~~~el~  108 (129)
T d1ykhb1         103 VEDEKI  108 (129)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: PhoU-like
family: PhoU-like
domain: Phosphate transport system protein PhoU
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.33  E-value=13  Score=32.06  Aligned_cols=12  Identities=0%  Similarity=0.055  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHH
Q 010712           52 EQKIASQHVEMQ   63 (503)
Q Consensus        52 EqeIe~~~~EIq   63 (503)
                      .++|+.+..++.
T Consensus        10 ~~~L~~l~~~l~   21 (215)
T d1t72a_          10 FKELEETKEQVI   21 (215)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            334444444333

>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.92  E-value=6.7  Score=41.46  Aligned_cols=21  Identities=14%  Similarity=0.060  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHH
Q 010712          176 ELESLRQEYHHCRGTYEYEKK  196 (503)
Q Consensus       176 EIe~L~qELq~lR~ele~ekk  196 (503)
                      ++++|.+|+++++.+++.+++
T Consensus       710 ei~kL~~E~~~l~~Ei~~L~~  730 (760)
T d1bjta_         710 RYQKLLKQKQEKETELENLLK  730 (760)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
Confidence            355555555555555555543

>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=81.13  E-value=9.3  Score=28.86  Aligned_cols=8  Identities=13%  Similarity=-0.055  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010712          109 RNLTEKIA  116 (503)
Q Consensus       109 ~eL~eki~  116 (503)
                      ++|..=|.
T Consensus         7 ~e~~~Wl~   14 (104)
T d1cuna2           7 EEEEAWIN   14 (104)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Eukaryotic DNA topoisomerase I, dispensable insert domain
family: Eukaryotic DNA topoisomerase I, dispensable insert domain
domain: Eukaryotic DNA topoisomerase I, dispensable insert domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.03  E-value=4.9  Score=29.97  Aligned_cols=6  Identities=50%  Similarity=0.601  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 010712          111 LTEKIA  116 (503)
Q Consensus       111 L~eki~  116 (503)
                      |+++|.
T Consensus         7 Lq~KI~   12 (72)
T d1k4ta1           7 LQTKID   12 (72)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.78  E-value=6.7  Score=30.19  Aligned_cols=18  Identities=17%  Similarity=0.307  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 010712           80 RQELAAAQHELQILHGQI   97 (503)
Q Consensus        80 rqeLa~lq~EL~~L~~qL   97 (503)
                      ...|+.+..-|+.+..++
T Consensus        37 e~~leEA~ell~qMelEv   54 (89)
T d1vcsa1          37 EKQLEEARELLEQMDLEV   54 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHH
Confidence            333333333333333333