Citrus Sinensis ID: 010728

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
MAEKFWTKEEDKAMVESVLGTEACEFLIKSTANNVMAELVTPPGDLGVHQRLCQVVEGSNWNYAIYWHASNLKSGGSALIWGDGHCRDPKDGAVGGGKSSGVNKVDEVERKEEVKKRVLQKLHACFGGLENYASRFDGVSGVEMFYLTSMYFNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAKSGVVELGSVKLIPEEQNVVEMVKTVFEGSSSVQTKVFPKIFGHELSLGGSKSQSISINFSPKVEDELNFASDSYEIQAIGSNQVYGNSSNRCRSEDEAKLFPHLNQMIVGGFDAQARVSSLEQKDDSSPQGDDRKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEKDMSNNKQKQISVPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSGASEQLKEKLLAALSK
ccccccccHHHHHHHHHHHcccccHHHHcccccccccccccccccHHHHHHHHHHHccccccEEEEEEEccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEccEEEcccccccccEEEEccccEEEcccccccccccHHHHHHHHccccEEEEEEccccEEEccccEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEccccEEEEEEEccccccHHHHHHHHHHccccEEEEEEEEEEccEEEEEEEEEEccccHHHHHHHHHHHHcc
cccccEcccccHHHHHHHHcccHHHHcccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEEcccccccEEEEEcccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccEEEHHHHEEEEccccccccccHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEEEccEEEEEEEEEccccHHHHHHHHHHHHHcc
maekfwtkEEDKAMVESVLGTEACEFLIKSTANNVMaelvtppgdlgvhqRLCQVVEGSNWNYAIYWHAsnlksggsaliwgdghcrdpkdgavgggkssgvnkvdevERKEEVKKRVLQKLHACFGGlenyasrfdgvsGVEMFYLTSMYFnfrcdsaygpghayksgrsiwtSGIVSCSDHYESRSFLAMSAGFQTVVFVPAksgvvelgsvklipeeqNVVEMVKTVFEgsssvqtkvfpkifghelslggsksqsisinfspkvedelnfasdsyEIQAIgsnqvygnssnrcrsedeaklfphlnqmiVGGFDAQARVSsleqkddsspqgddrkprkrgrkpangreeplnhVEAERQRREKLNQRFYALRAvvpniskmdkasLLGDAITYITDLQMKIRVLETEKdmsnnkqkqisvpeidfqprhedavvrvscplddhpvssvMKTFSEHQIVaqesnvsttedKVIHTFSIQTQSGASEQLKEKLLAALSK
maekfwtkeedkamvESVLGTEACEFLIKSTANNVMAELVTPPGDLGVHQRLCQVVEGSNWNYAIYWHASNLKSGGSALIWGDGHCRDPKdgavgggkssgvnkvdeverkEEVKKRVLQKLHACFGGLENYASRFDGVSGVEMFYLTSMYFNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAKSGVVELGsvklipeeqnVVEMVKTVFEGSSSVQTKVFPKIFGHElslggsksqSISINFSPKVEDELNFASDSYEIQAIGSNQVYGNSSNRCRSEDEAKLFPHLNQMIVGGFDAQARVSSleqkddsspqgddrkprkrgrkpangreeplnhveaerqRREKLNQRFYALravvpniskmdkaSLLGDAITYITDLQMKIRVLETekdmsnnkqkqisvpeidfqprHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQesnvsttedKVIHTFSiqtqsgaseqLKEKLLAALSK
MAEKFWTKEEDKAMVESVLGTEACEFLIKSTANNVMAELVTPPGDLGVHQRLCQVVEGSNWNYAIYWHASNLKSGGSALIWGDGHCRDPkdgavgggkssgvnkvdeverkeevkkrvLQKLHACFGGLENYASRFDGVSGVEMFYLTSMYFNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAKSGVVELGSVKLIPEEQNVVEMVKTVFEGSSSVQTKVFPKIFGHELSLGGSKSQSISINFSPKVEDELNFASDSYEIQAIGSNQVYGNSSNRCRSEDEAKLFPHLNQMIVGGFDAQARVSSLEQKDDSSPQgddrkprkrgrkpANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEKDMSNNKQKQISVPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSGASEQLKEKLLAALSK
*************MVESVLGTEACEFLIKSTANNVMAELVTPPGDLGVHQRLCQVVEGSNWNYAIYWHASNLKSGGSALIWGDGHC******************************RVLQKLHACFGGLENYASRFDGVSGVEMFYLTSMYFNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAKSGVVELGSVKLIPEEQNVVEMVKTVFEGSSSVQTKVFPKIFGHELSL**************************YEIQAIG*******************LFPHLNQMIVGGF*****************************************************QRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVL****************************VVRVSCPL*********************************************************
***KFWTKEEDKAMVESVLGTEACEFL************************LCQVVEGSNWNYAIYWHASNLKSGGSALIWGDGHCRDP***********************************************DGVSGVEMFYLTSMYFNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAKSGVVELGSVKLIPEEQNVVEMVKTVFEGSSSVQTKVFPKIFGHELSLGGSKSQSISINFSPKVEDELNFASDSYEIQAIG**QVYGNSSNRCRSEDEAKLFPHLNQMIVGGFDAQARVSSLEQKDDSSP**************************************FYALRAVVPNISKMDKASLLGDAITYITDL*****************************PRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSGA*EQLKEKLLAALSK
*************MVESVLGTEACEFLIKSTANNVMAELVTPPGDLGVHQRLCQVVEGSNWNYAIYWHASNLKSGGSALIWGDGHCRDPKDGAVGGGKSSGVNKVDEVERKEEVKKRVLQKLHACFGGLENYASRFDGVSGVEMFYLTSMYFNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAKSGVVELGSVKLIPEEQNVVEMVKTVFEGSSSVQTKVFPKIFGHELSLGGSKSQSISINFSPKVEDELNFASDSYEIQAIGSNQVYGNSSNRCRSEDEAKLFPHLNQMIVGGFDAQAR*********************************LNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEKDMSNNKQKQISVPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSGASEQLKEKLLAALSK
*****W**EEDKAMVESVLGTEACEFLIKST************GDLGVHQRLCQVVEGSNWNYAIYWHASNLKSGGSALIWGDGHCRDPKDGAVGGGKSSGVNKVDEVERKEEVKKRVLQKLHACFGGLENYASRFDGVSGVEMFYLTSMYFNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAKSGVVELGSVKLIPEEQNVVEMVKTVFEGSSS***********************************************************************************************************************LN**E*ERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEKDMS******ISVPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSGASEQLKEKLLAALS*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAEKFWTKEEDKAMVESVLGTEACEFLIKSTANNVMAELVTPPGDLGVHQRLCQVVEGSNWNYAIYWHASNLKSGGSALIWGDGHCRDPKDGAVGGGKSSGVNKVDEVERKEEVKKRVLQKLHACFGGLENYASRFDGVSGVEMFYLTSMYFNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAKSGVVELGSVKLIPEEQNVVEMVKTVFEGSSSVQTKVFPKIFGHELSLGGSKSQSISINFSPKVEDELNFASDSYEIQAIGSNQVYGNSSNRCRSEDEAKLFPHLNQMIVGGFDAQARVSSLEQKDDSSPQGDDRKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYxxxxxxxxxxxxxxxxxxxxxQKQISVPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSGASEQLKEKLLAALSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query502 2.2.26 [Sep-21-2011]
O23487467 Transcription factor bHLH yes no 0.912 0.980 0.534 1e-149
Q9ZPY8566 Transcription factor ABA- no no 0.974 0.863 0.386 3e-91
Q9LNJ5590 Transcription factor bHLH no no 0.320 0.272 0.532 3e-45
O49687589 Transcription factor MYC4 no no 0.310 0.264 0.452 1e-35
Q9FIP9592 Transcription factor ATR2 no no 0.324 0.275 0.440 3e-35
Q9LUK7511 Transcription factor bHLH no no 0.900 0.884 0.271 4e-35
Q39204623 Transcription factor MYC2 no no 0.316 0.255 0.422 5e-34
Q8W2F1526 Transcription factor MYC1 no no 0.768 0.733 0.237 5e-19
O23090423 Transcription factor bHLH no no 0.268 0.319 0.378 2e-18
Q9FT81518 Transcription factor TT8 no no 0.342 0.332 0.290 1e-14
>sp|O23487|BH003_ARATH Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1 Back     alignment and function desciption
 Score =  530 bits (1365), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 273/511 (53%), Positives = 359/511 (70%), Gaps = 53/511 (10%)

Query: 1   MAEKFWTKEEDKAMVESVLGTEACEFLIK--STANNVMAELVTPPGDLGVHQRLCQVVEG 58
           M +KFW  +ED+AMVES +G+EAC+F I   S +N  +++LV+PP D  + Q L  VVEG
Sbjct: 1   MGQKFWENQEDRAMVESTIGSEACDFFISTASASNTALSKLVSPPSDSNLQQGLRHVVEG 60

Query: 59  SNWNYAIYWHASNLKSG-GSALIWGDGHCRDPKDGAVGGGKSSGVNKVDEVERKEEVKKR 117
           S+W+YA++W ASN+ S  G  LIWGDGHCR  K GA G          ++  +++E+K+R
Sbjct: 61  SDWDYALFWLASNVNSSDGCVLIWGDGHCR-VKKGASG----------EDYSQQDEIKRR 109

Query: 118 VLQKLHACFGGLE--NYASRFDGVSGVEMFYLTSMYFNFRCDS-AYGPGHAYKSGRSIWT 174
           VL+KLH  F G +  +   +   ++ ++MFYL S+YF+FRCD+  YGP   Y SG+ +W 
Sbjct: 110 VLRKLHLSFVGSDEDHRLVKSGALTDLDMFYLASLYFSFRCDTNKYGPAGTYVSGKPLWA 169

Query: 175 SGIVSCSDHYESRSFLAMSAGFQTVVFVPAKSGVVELGSVKLIPEEQNVVEMVKTVFEGS 234
           + + SC  +Y  RSFLA SAGFQTV+ VP  SGVVELGS++ IPE+++V+EMVK+VF GS
Sbjct: 170 ADLPSCLSYYRVRSFLARSAGFQTVLSVPVNSGVVELGSLRHIPEDKSVIEMVKSVFGGS 229

Query: 235 SSVQTKVFPKIFGHELSLGGSKSQSISINFSPKVEDELNFASDSYEIQAI-GSNQVYGNS 293
             VQ K  PKIFG +LSLGG+K +S+SINFSPK ED+  F+ +SYE+QAI GSNQVYG  
Sbjct: 230 DFVQAKEAPKIFGRQLSLGGAKPRSMSINFSPKTEDDTGFSLESYEVQAIGGSNQVYGYE 289

Query: 294 SNRCRSEDEAKLFPHLNQMIVGGFDAQARVSSLEQKDDSSPQGDDRKPRKRGRKPANGRE 353
                                            + KD++    D++KPRKRGRKPANGRE
Sbjct: 290 ---------------------------------QGKDETLYLTDEQKPRKRGRKPANGRE 316

Query: 354 EPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEK 413
           E LNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLL DAITYITD+Q KIRV ETEK
Sbjct: 317 EALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITDMQKKIRVYETEK 376

Query: 414 D-MSNNKQKQISVPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTT 472
             M   +  QI+  E+D+Q RH+DAVVR+SCPL+ HPVS V++T  E++++  +SNV+ T
Sbjct: 377 QIMKRRESNQITPAEVDYQQRHDDAVVRLSCPLETHPVSKVIQTLRENEVMPHDSNVAIT 436

Query: 473 EDKVIHTFSIQTQSGAS-EQLKEKLLAALSK 502
           E+ V+HTF+++ Q G + EQLK+KLLA+LS+
Sbjct: 437 EEGVVHTFTLRPQGGCTAEQLKDKLLASLSQ 467

Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2 Back     alignment and function description
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1 Back     alignment and function description
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1 Back     alignment and function description
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LUK7|BH028_ARATH Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1 Back     alignment and function description
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q8W2F1|BH012_ARATH Transcription factor MYC1 OS=Arabidopsis thaliana GN=BHLH12 PE=1 SV=1 Back     alignment and function description
>sp|O23090|BH014_ARATH Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1 Back     alignment and function description
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
255559983503 DNA binding protein, putative [Ricinus c 0.992 0.990 0.684 0.0
302398591502 BHLH domain class transcription factor [ 0.986 0.986 0.669 0.0
224066289473 predicted protein [Populus trichocarpa] 0.938 0.995 0.668 0.0
224082760466 predicted protein [Populus trichocarpa] 0.924 0.995 0.642 0.0
449468542501 PREDICTED: transcription factor bHLH3-li 0.980 0.982 0.624 0.0
356536812504 PREDICTED: transcription factor bHLH3-li 0.980 0.976 0.636 0.0
359479613491 PREDICTED: transcription factor bHLH3-li 0.964 0.985 0.622 1e-171
356548045478 PREDICTED: transcription factor bHLH3-li 0.930 0.976 0.611 1e-170
15234929467 transcription factor bHLH3 [Arabidopsis 0.912 0.980 0.534 1e-148
297735523485 unnamed protein product [Vitis vinifera] 0.884 0.915 0.562 1e-146
>gi|255559983|ref|XP_002521010.1| DNA binding protein, putative [Ricinus communis] gi|223539847|gb|EEF41427.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/507 (68%), Positives = 408/507 (80%), Gaps = 9/507 (1%)

Query: 1   MAEKFWTKEEDKAMVESVLGTEACEFLIKSTANNVMAELVTPPGDLGVHQRLCQVVEGSN 60
           M EKFW KE DKAMVES++G EACEFLI S +NNV+A+LV+PP  LG+ + L Q+V+GSN
Sbjct: 1   MGEKFWAKE-DKAMVESIIGAEACEFLISSASNNVLADLVSPPSSLGLQEGLNQLVDGSN 59

Query: 61  WNYAIYWHASNLKSGGSALIWGDGHCRDPKDGAVGGGKSSGVNKVDEVERKEEVKKRVLQ 120
           WNYAI+W AS+LKSGGS L WG+G CR+ K GA G G ++G  +++ VE   E KKRVLQ
Sbjct: 60  WNYAIFWCASSLKSGGSILTWGEGICRNQKCGA-GEGNATGDRRLEGVENGNESKKRVLQ 118

Query: 121 KLHACFGGLE--NYASRFDGVSGVEMFYLTSMYFNFRCDSAYGPGHAYKSGRSIWTSGIV 178
           KLH+CF   +  NYA+  +GVS VEMFYLTSMYF FRCDSAYGP  +YKSGRSIW S ++
Sbjct: 119 KLHSCFNASDGDNYAANLNGVSDVEMFYLTSMYFTFRCDSAYGPAESYKSGRSIWASDVI 178

Query: 179 SCSDHYESRSFLAMSAGFQTVVFVPAKSGVVELGSVKLIPEEQNVVEMVKTVFEGSSSVQ 238
           +C +HY  RSFLA SAGFQT+ F P KSGVVELGS+K IPEE  + E  KT+F G++++Q
Sbjct: 179 TCLEHYHLRSFLARSAGFQTLAFFPVKSGVVELGSIKSIPEEHIIGERAKTIFGGANALQ 238

Query: 239 TKVFPKIFGHELSLGGSKSQSISINFSPKVEDELNFASDSYEIQAIGSNQVYGNSSNRCR 298
            K  PKIFG ELSLG SKS+SISINFSPKVED+L F S+  E  AIG+N V G++S+ C 
Sbjct: 239 AKTCPKIFGRELSLGSSKSRSISINFSPKVEDDLIFTSEYPE--AIGTNPVNGSTSSGCP 296

Query: 299 SE-DEAKLFPHLNQMIVGGFDAQARVSSLEQ-KDDSSPQGDDRKPRKRGRKPANGREEPL 356
           S+ +EAKLFPHLNQM V GF+ +  V+ LEQ K+D SP  ++RKPRKRGRKPANGREEPL
Sbjct: 297 SDINEAKLFPHLNQMNVPGFNTETMVTGLEQPKEDLSPHQNERKPRKRGRKPANGREEPL 356

Query: 357 NHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEKDMS 416
           NHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQ KIRVLETEK+MS
Sbjct: 357 NHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQTKIRVLETEKEMS 416

Query: 417 NNKQKQISVPEIDFQPRHEDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTE-DK 475
           NN Q Q  V EIDFQ R EDAVVRVSCPLD HPVSS++++F EHQ+ AQE N+S  E DK
Sbjct: 417 NNNQNQFPVTEIDFQARQEDAVVRVSCPLDVHPVSSILESFREHQVTAQECNMSAAENDK 476

Query: 476 VIHTFSIQTQSGASEQLKEKLLAALSK 502
           +IHTFSI+TQ GA+EQLKEKL A  SK
Sbjct: 477 IIHTFSIRTQGGAAEQLKEKLEAVFSK 503

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302398591|gb|ADL36590.1| BHLH domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|224066289|ref|XP_002302066.1| predicted protein [Populus trichocarpa] gi|222843792|gb|EEE81339.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224082760|ref|XP_002306828.1| predicted protein [Populus trichocarpa] gi|222856277|gb|EEE93824.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449468542|ref|XP_004151980.1| PREDICTED: transcription factor bHLH3-like [Cucumis sativus] gi|449505155|ref|XP_004162392.1| PREDICTED: transcription factor bHLH3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356536812|ref|XP_003536928.1| PREDICTED: transcription factor bHLH3-like [Glycine max] Back     alignment and taxonomy information
>gi|359479613|ref|XP_002282584.2| PREDICTED: transcription factor bHLH3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356548045|ref|XP_003542414.1| PREDICTED: transcription factor bHLH3-like [Glycine max] Back     alignment and taxonomy information
>gi|15234929|ref|NP_193376.1| transcription factor bHLH3 [Arabidopsis thaliana] gi|75318117|sp|O23487.1|BH003_ARATH RecName: Full=Transcription factor bHLH3; AltName: Full=Basic helix-loop-helix protein 3; Short=AtbHLH3; Short=bHLH 3; AltName: Full=Transcription factor EN 34; AltName: Full=bHLH transcription factor bHLH003 gi|16226919|gb|AAL16298.1|AF428368_1 AT4g16430/dl4240w [Arabidopsis thaliana] gi|18026954|gb|AAL55710.1|AF251688_1 putative transcription factor BHLH3 [Arabidopsis thaliana] gi|2244999|emb|CAB10419.1| transcription factor like protein [Arabidopsis thaliana] gi|7268393|emb|CAB78685.1| transcription factor like protein [Arabidopsis thaliana] gi|16323045|gb|AAL15257.1| AT4g16430/dl4240w [Arabidopsis thaliana] gi|25141207|gb|AAN73298.1| At4g16430/dl4240w [Arabidopsis thaliana] gi|332658347|gb|AEE83747.1| transcription factor bHLH3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297735523|emb|CBI17963.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
TAIR|locus:2130619467 AT4G16430 "AT4G16430" [Arabido 0.557 0.599 0.503 1.7e-126
TAIR|locus:2039094566 AIB "AT2G46510" [Arabidopsis t 0.300 0.266 0.560 6.6e-79
TAIR|locus:2035237590 AT1G01260 "AT1G01260" [Arabido 0.298 0.254 0.525 3.6e-78
TAIR|locus:2035609623 MYC2 "AT1G32640" [Arabidopsis 0.422 0.340 0.391 1.1e-43
TAIR|locus:2141055589 MYC4 "AT4G17880" [Arabidopsis 0.147 0.125 0.740 5.4e-41
UNIPROTKB|Q336P5699 Os10g0575000 "Os10g0575000 pro 0.165 0.118 0.690 9.6e-40
TAIR|locus:2178555592 MYC3 "AT5G46760" [Arabidopsis 0.141 0.119 0.746 1.5e-38
TAIR|locus:2172932511 NIG1 "AT5G46830" [Arabidopsis 0.695 0.682 0.285 3.2e-32
TAIR|locus:2134583423 AT4G00870 "AT4G00870" [Arabido 0.364 0.432 0.348 4.8e-27
TAIR|locus:2118524518 TT8 "AT4G09820" [Arabidopsis t 0.256 0.249 0.306 7.2e-25
TAIR|locus:2130619 AT4G16430 "AT4G16430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 728 (261.3 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
 Identities = 150/298 (50%), Positives = 198/298 (66%)

Query:     1 MAEKFWTKEEDKAMVESVLGTEACEFLIK--STANNVMAELVTPPGDLGVHQRLCQVVEG 58
             M +KFW  +ED+AMVES +G+EAC+F I   S +N  +++LV+PP D  + Q L  VVEG
Sbjct:     1 MGQKFWENQEDRAMVESTIGSEACDFFISTASASNTALSKLVSPPSDSNLQQGLRHVVEG 60

Query:    59 SNWNYAIYWHASNLKSG-GSALIWGDGHCRDPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 117
             S+W+YA++W ASN+ S  G  LIWGDGHCR                              
Sbjct:    61 SDWDYALFWLASNVNSSDGCVLIWGDGHCR-----------VKKGASGEDYSQQDEIKRR 109

Query:   118 XLQKLHACF-GGLENYASRFDG-VSGVEMFYLTSMYFNFRCDS-AYGPGHAYKSGRSIWT 174
              L+KLH  F G  E++     G ++ ++MFYL S+YF+FRCD+  YGP   Y SG+ +W 
Sbjct:   110 VLRKLHLSFVGSDEDHRLVKSGALTDLDMFYLASLYFSFRCDTNKYGPAGTYVSGKPLWA 169

Query:   175 SGIVSCSDHYESRSFLAMSAGFQTVVFVPAKSGVVELGSVKLIPEEQNVVEMVKTVFEGS 234
             + + SC  +Y  RSFLA SAGFQTV+ VP  SGVVELGS++ IPE+++V+EMVK+VF GS
Sbjct:   170 ADLPSCLSYYRVRSFLARSAGFQTVLSVPVNSGVVELGSLRHIPEDKSVIEMVKSVFGGS 229

Query:   235 SSVQTKVFPKIFGHELSLGGSKSQSISINFSPKVEDELNFASDSYEIQAIG-SNQVYG 291
               VQ K  PKIFG +LSLGG+K +S+SINFSPK ED+  F+ +SYE+QAIG SNQVYG
Sbjct:   230 DFVQAKEAPKIFGRQLSLGGAKPRSMSINFSPKTEDDTGFSLESYEVQAIGGSNQVYG 287
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2039094 AIB "AT2G46510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035237 AT1G01260 "AT1G01260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035609 MYC2 "AT1G32640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141055 MYC4 "AT4G17880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q336P5 Os10g0575000 "Os10g0575000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2178555 MYC3 "AT5G46760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172932 NIG1 "AT5G46830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134583 AT4G00870 "AT4G00870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118524 TT8 "AT4G09820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O23487BH003_ARATHNo assigned EC number0.53420.91230.9807yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.II.1638.1
hypothetical protein (473 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
pfam14215171 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB trans 6e-49
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 1e-13
smart0035353 smart00353, HLH, helix loop helix domain 5e-12
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 5e-11
>gnl|CDD|222598 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
 Score =  165 bits (421), Expect = 6e-49
 Identities = 69/185 (37%), Positives = 97/185 (52%), Gaps = 15/185 (8%)

Query: 48  VHQRLCQVVEGSNWNYAIYWHASNLKSGGSALIWGDGHCRDPKDGAVGGGKSSGVNKVDE 107
           + QRL  +VE   W+YAI+W  S  +SG   L WGDG+            +  G      
Sbjct: 1   LQQRLQALVESEQWSYAIFWQLSPDQSG--VLGWGDGYYNGEIKTRKTVAEELG------ 52

Query: 108 VERKEEVKKRVLQKLHACFGG-LENYASRFDGVSGVEMFYLTSMYFNFRCDSAYGPGHAY 166
                  +K+VL++L++   G  +  A   + ++  E FYL SM F+F       PG A+
Sbjct: 53  -----LQRKKVLRELYSLLSGSRDAAALSPEDLTDTEWFYLVSMTFSFPPGE-GLPGKAF 106

Query: 167 KSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAKSGVVELGSVKLIPEEQNVVEM 226
            SG  IW SG         SRS+LA SAG QT+V +P   GVVELGS + IPE+ N+V+ 
Sbjct: 107 ASGSHIWLSGANELDSSNCSRSWLAQSAGIQTIVCIPVPGGVVELGSTEKIPEDLNLVQH 166

Query: 227 VKTVF 231
           VK++F
Sbjct: 167 VKSLF 171

This is the N-terminal region of a family of MYB and MYC transcription factors. The DNA-binding HLH domain is further downstream, pfam00010. Members of the MYB and MYC family regulate the biosynthesis of phenylpropanoids in several plant species (DOI:10.1007/s11295-009-0232-y). Length = 171
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 502
PF14215163 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa 100.0
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.27
smart0035353 HLH helix loop helix domain. 99.26
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.22
KOG1318411 consensus Helix loop helix transcription factor EB 98.65
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.35
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 98.13
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 98.08
KOG4304250 consensus Transcriptional repressors of the hairy/ 98.02
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 97.95
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 97.94
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 97.75
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 97.7
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.49
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.47
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 97.46
KOG0561 373 consensus bHLH transcription factor [Transcription 97.33
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 97.22
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 97.19
PLN0321793 transcription factor ATBS1; Provisional 97.0
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 96.96
KOG4029228 consensus Transcription factor HAND2/Transcription 96.9
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 96.69
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 96.28
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 96.16
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 96.08
PRK05007884 PII uridylyl-transferase; Provisional 96.04
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 95.94
PRK01759854 glnD PII uridylyl-transferase; Provisional 95.69
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 95.51
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 95.25
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 95.21
PRK00275895 glnD PII uridylyl-transferase; Provisional 95.04
PRK0019490 hypothetical protein; Validated 94.95
PRK04374869 PII uridylyl-transferase; Provisional 94.82
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 94.52
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 94.49
PRK05092931 PII uridylyl-transferase; Provisional 94.23
PRK03059856 PII uridylyl-transferase; Provisional 94.09
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 94.0
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 93.99
PRK03381774 PII uridylyl-transferase; Provisional 93.77
KOG4447173 consensus Transcription factor TWIST [Transcriptio 93.67
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 93.59
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 93.02
PRK03381 774 PII uridylyl-transferase; Provisional 92.96
PRK05007 884 PII uridylyl-transferase; Provisional 92.91
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 92.86
PRK01759 854 glnD PII uridylyl-transferase; Provisional 92.39
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 92.35
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 92.09
PRK03059 856 PII uridylyl-transferase; Provisional 91.66
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 91.56
KOG3910632 consensus Helix loop helix transcription factor [T 91.4
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 91.24
cd0211660 ACT ACT domains are commonly involved in specifica 90.5
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 90.1
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 90.06
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 89.98
PRK00275 895 glnD PII uridylyl-transferase; Provisional 89.6
PRK04435147 hypothetical protein; Provisional 89.48
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 89.29
PRK05092 931 PII uridylyl-transferase; Provisional 89.16
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 88.77
PRK04374 869 PII uridylyl-transferase; Provisional 88.58
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 88.36
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 88.12
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 87.96
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 87.65
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 87.54
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 87.08
PRK08577136 hypothetical protein; Provisional 86.25
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 85.88
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 85.37
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 85.09
TIGR00655 280 PurU formyltetrahydrofolate deformylase. This mode 84.17
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 84.05
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 84.02
PRK07334403 threonine dehydratase; Provisional 83.4
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 83.03
KOG4395285 consensus Transcription factor Atonal, contains HT 82.38
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 80.15
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
Probab=100.00  E-value=4.1e-54  Score=402.24  Aligned_cols=163  Identities=44%  Similarity=0.783  Sum_probs=150.6

Q ss_pred             HHHHHHhhccCCCceEEEeeeecCCCCCCeeEEeCCcccCCCCCCCCCCCccCCcccchhHHHHHHHHHHHHHhHhhhhC
Q 010728           48 VHQRLCQVVEGSNWNYAIYWHASNLKSGGSALIWGDGHCRDPKDGAVGGGKSSGVNKVDEVERKEEVKKRVLQKLHACFG  127 (502)
Q Consensus        48 Lq~~L~~lv~~~~W~YAIFWq~s~~~~g~~vL~WgDGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~l~~L~~l~~  127 (502)
                      |||+||+||++.+|+||||||++++++   +|+||||||+++++++..         .   +..+++|+++|++||++++
T Consensus         1 Lq~~Lr~lv~~~~W~YaVFWk~~~~~~---~L~W~DG~~~g~~~~~~~---------~---~~~~~~~~~~l~~l~~~~~   65 (163)
T PF14215_consen    1 LQQRLRSLVENSQWTYAVFWKLSPDNS---VLVWGDGYCNGPKETRKN---------G---EEEQEQRSKVLRELHSSFS   65 (163)
T ss_pred             ChHHHHHHhCCCCCcEEEEeEEcCCCC---eeeEcceeecCCcccccc---------h---hhccchhhhHHHHHhhhcc
Confidence            799999999999999999999999983   999999999988765322         1   1445569999999999987


Q ss_pred             CCccccccCCCCcceeEEEEEeeeeeeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecCCc
Q 010728          128 GLENYASRFDGVSGVEMFYLTSMYFNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAKSG  207 (502)
Q Consensus       128 ~~~~~al~~~~~td~Ewfyl~sm~~sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~~G  207 (502)
                         ++++.+++++|+||||++||+|+|  | +|+|||||++|+|+||++++.++.+.|+|+++|+++|||||||||+++|
T Consensus        66 ---~~~~~~~~v~~~e~f~~~s~~~sf--g-~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv~~G  139 (163)
T PF14215_consen   66 ---SYALSPEEVTDTEWFYLVSMSYSF--G-EGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPVPNG  139 (163)
T ss_pred             ---ccccccchhHHHHHHhhceeeEEe--c-CCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEecCC
Confidence               456788999999999999999999  9 9999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccccCCHHHHHHHHHHh
Q 010728          208 VVELGSVKLIPEEQNVVEMVKTVF  231 (502)
Q Consensus       208 VvELGSt~~I~Ed~~lv~~vk~~F  231 (502)
                      |||||||++|+||+++|++||++|
T Consensus       140 VvELGSt~~I~Ed~~~v~~vk~~F  163 (163)
T PF14215_consen  140 VVELGSTEKIPEDSNLVQRVKSLF  163 (163)
T ss_pred             EEEeeeeeeeccCHHHHHHHHhhC
Confidence            999999999999999999999998

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription] Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
1nkp_A88 Crystal Structure Of Myc-Max Recognizing Dna Length 6e-04
>pdb|1NKP|A Chain A, Crystal Structure Of Myc-Max Recognizing Dna Length = 88 Back     alignment and structure 
Iteration: 1

 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 358 HVEAERQRREKLNQRFYALRAVVPNISKMDKAS---LLGDAITYITDLQMKIRVLETEKD 414
           H   ERQRR +L + F+ALR  +P +   +KA    +L  A  YI  +Q + + L +E+D
Sbjct: 10  HNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED 69
Query: 415 MSNNKQKQI 423
           +   +++Q+
Sbjct: 70  LLRKRREQL 78

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 3e-17
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 3e-15
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 3e-14
1hlo_A80 Protein (transcription factor MAX); transcriptiona 3e-13
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 1e-09
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 6e-07
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 2e-06
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 2e-06
4f3l_A 361 Mclock, circadian locomoter output cycles protein 3e-06
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 1e-05
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
 Score = 75.8 bits (187), Expect = 3e-17
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 357 NHVEAERQRREKLNQRFYALRAVVPNI---SKMDKASLLGDAITYITDLQMKIRVLETEK 413
            H   ERQRR +L + F+ALR  +P +    K  K  +L  A  YI  +Q + + L +E+
Sbjct: 9   THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68

Query: 414 DMSNNKQKQ 422
           D+   +++Q
Sbjct: 69  DLLRKRREQ 77
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76 Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361 Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.59
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.48
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.48
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.46
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.46
4ati_A118 MITF, microphthalmia-associated transcription fact 99.44
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.43
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.4
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.39
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.36
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.28
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.98
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 98.96
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.81
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.62
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.55
4ath_A83 MITF, microphthalmia-associated transcription fact 98.18
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.73
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 96.23
2nyi_A 195 Unknown protein; protein structure initiative, PSI 95.35
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 95.11
1u8s_A 192 Glycine cleavage system transcriptional repressor, 94.82
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 94.55
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 94.4
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 93.91
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 93.01
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 92.99
1vhm_A195 Protein YEBR; structural genomics, unknown functio 92.92
2nyi_A195 Unknown protein; protein structure initiative, PSI 92.61
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 92.59
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 92.49
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 92.13
2qyb_A181 Membrane protein, putative; GAF domain, domain of 91.9
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 91.73
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 91.16
1u8s_A192 Glycine cleavage system transcriptional repressor, 90.79
3hcy_A151 Putative two-component sensor histidine kinase PR; 90.22
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 89.83
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 89.46
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 89.31
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 87.1
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 84.35
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 82.82
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 82.5
3o1l_A 302 Formyltetrahydrofolate deformylase; structural gen 82.34
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 82.18
3lou_A 292 Formyltetrahydrofolate deformylase; structural gen 82.02
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 81.2
3nrb_A 287 Formyltetrahydrofolate deformylase; N-terminal ACT 80.82
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.59  E-value=1.2e-15  Score=126.37  Aligned_cols=63  Identities=27%  Similarity=0.372  Sum_probs=59.7

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCC-CCCChhcHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010728          355 PLNHVEAERQRREKLNQRFYALRAVVPNI-SKMDKASLLGDAITYITDLQMKIRVLETEKDMSN  417 (502)
Q Consensus       355 ~~~H~~~ER~RR~kln~~f~~LrslvP~~-~K~dKasiL~~aI~YIk~Lq~~v~~Le~~~~~l~  417 (502)
                      +.+|+.+||+||++||+.|..|+++||++ .|+||++||.+||+||++|+.+++.|+.+.+.+.
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~   70 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999987 8999999999999999999999999999988765
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 502
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 1e-15
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 5e-15
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 8e-15
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 9e-15
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 2e-13
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 5e-13
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 2e-12
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 4e-12
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 1e-15
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 357 NHVEAERQRREKLNQRFYALRAVVP--NISKMDKASLLGDAITYITDLQMKIRVLETEKD 414
           +H   ER+RR+ +   F++LR  VP     K  +A +L  A  YI  ++ K    + + D
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64

Query: 415 MSNNKQKQ 422
               +   
Sbjct: 65  DLKRQNAL 72
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.47
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.46
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.42
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.4
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.4
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.34
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.3
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.29
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 96.3
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 96.08
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 93.88
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 93.59
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 93.49
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 90.31
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 89.38
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 88.49
d1sc6a384 Phosphoglycerate dehydrogenase, regulatory (C-term 84.33
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 83.45
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.7e-14  Score=115.70  Aligned_cols=63  Identities=27%  Similarity=0.372  Sum_probs=58.3

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCC-CCCChhcHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010728          355 PLNHVEAERQRREKLNQRFYALRAVVPNI-SKMDKASLLGDAITYITDLQMKIRVLETEKDMSN  417 (502)
Q Consensus       355 ~~~H~~~ER~RR~kln~~f~~LrslvP~~-~K~dKasiL~~aI~YIk~Lq~~v~~Le~~~~~l~  417 (502)
                      +.+|+.+||+||++||+.|..|++|||+. .|++|++||.+||+||+.|+.+++.|+.+...+.
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk   70 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999975 6999999999999999999999999998887654
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure