Citrus Sinensis ID: 010734

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--

MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS

cccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccHHHHHcccccccccccEEEEEccccccccccccEEccccccccccccccccEEHHHHHHHHHHHcccHHHHHHHHccEEEEEccccccEEEcccccHHHHHHHHHHccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccEEEEEEEHHHHHHccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccEEcHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccEEEccEEEEcccccEEEEcccccccccccccccccccccccccccEEEccc

HHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccEcccHHHHHHHHHHccccccHHHccHHHHHHHHHccEcHHHccccEEEccccHHHccEEEccccccccccEEEcEEEHHHcHHHHHHcccccHHHHHHHHHHcEEEEEccccEEEHHHHccHHHHHHHHccccccEEEEcccccEEEEcccccccccccEccHHHHHHHHHccccccEEEEEEccccccHHHHHHHcHHHHHcccccEEEEEEcHHHHHHHccccHccccccccHHHHHccHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHccccEEEEEcccccHHHccHHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHcccccEEEcHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccEEEcccEEcccccEEEEcccccccccccccccHHHcccEcccccEEEccc

mdefnlhltgDIHAITAANNLLAAAIDTRIFHEASQSDKAlfnrlcppnkegersFSNIMFRRLKklgisktkpedltpeEINRFarldidpasitWRRVMDVNDRFLRKItigqgpeekgmvretgFDISVASEIMAVLALTTSLADMRERLGKMvignskagdpitaddlgvgGALTVLMKDainptlmqtlegtpvlvhagpfaniahgnssIVADKIALklvgpggfvvteagfgadigaEKFMNIkcrysgltpqCAVIVATIRALKmhgggpqvvagkpldhaylNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCshhahggkgaVDLGIAVQRACEnvtqplkflypldVSIKEKIDTIARSYgasgveysEEAEKQIEMYtgqgfsglpicmaktqysfshnaaekgaptgfilpirdvrasigagfiyplvgtmstmpglptrpcfyeidvdtatgkvvgls

MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKalfnrlcppnkegersfsnIMFRRLKklgisktkpedltpeeinrfarldidpasitwrrvmdvnDRFLRKitigqgpeekgmvRETGFDISVASEIMAVLALTTSLADMRERLGKMvignskagdpitaDDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS

MDEFNLHLTGDIHaitaannllaaaidtRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKaelnavrnaamaagafdaVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS

****NLHLTGDIHAITAANNLLAAAIDTRIFHEAS***KALFNRLC***********NIMFRRLKKLG************EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKV****

*DEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKV****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		502	2.2.26 [Sep-21-2011]
P28723		637	Formate--tetrahydrofolate	N/A	no	1.0	0.788	0.882	0.0
Q9SPK5		634	Formate--tetrahydrofolate	yes	no	1.0	0.791	0.884	0.0
P27653		935	C-1-tetrahydrofolate synt	yes	no	0.994	0.533	0.675	0.0
P11586		935	C-1-tetrahydrofolate synt	yes	no	0.994	0.533	0.689	0.0
Q922D8		935	C-1-tetrahydrofolate synt	yes	no	0.994	0.533	0.685	0.0
Q5R8P0		935	C-1-tetrahydrofolate synt	yes	no	0.994	0.533	0.683	0.0
Q6UB35		978	Monofunctional C1-tetrahy	no	no	0.994	0.510	0.679	0.0
Q0VCR7		975	Monofunctional C1-tetrahy	no	no	0.994	0.511	0.673	0.0
Q3V3R1		977	Monofunctional C1-tetrahy	no	no	0.994	0.510	0.673	0.0
Q27772		933	C-1-tetrahydrofolate synt	N/A	no	0.994	0.534	0.597	1e-173

>sp\|P28723\|FTHS_SPIOL Formate--tetrahydrofolate ligase OS=Spinacia oleracea PE=1 SV=3	Back alignment and function desciption

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/502 (88%), Positives = 484/502 (96%)

Query: 1   MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIM 60
           MDEFNLHLTGDIHAITA+NNLLAAAIDTR+FHE++QSDKALFNRLCPPNKEG+R+F NIM
Sbjct: 136 MDEFNLHLTGDIHAITASNNLLAAAIDTRMFHESTQSDKALFNRLCPPNKEGKRTFCNIM 195

Query: 61  FRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK 120
            RRLKKLGI KT P+DLTPEE+ +FARLDIDP SITWRRVMDVNDRFLRKI++GQGP+EK
Sbjct: 196 HRRLKKLGIDKTNPDDLTPEEVTKFARLDIDPDSITWRRVMDVNDRFLRKISVGQGPDEK 255

Query: 121 GMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTV 180
           GMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAG+PITADDLG+GGALTV
Sbjct: 256 GMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEPITADDLGLGGALTV 315

Query: 181 LMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240
           LMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFG+
Sbjct: 316 LMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGS 375

Query: 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEA 300
           DIG EKFMNIKCRYSGLTPQCA++VAT+RALKMHGGGPQVVAGKPLD AYL ENV LVEA
Sbjct: 376 DIGTEKFMNIKCRYSGLTPQCAIVVATVRALKMHGGGPQVVAGKPLDRAYLTENVGLVEA 435

Query: 301 GCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 360
           GCVNLARHI NTKAYG+NVVVA+NMF++D++AELNAV+ AAM AGAFDAV+C+HHAHGGK
Sbjct: 436 GCVNLARHIINTKAYGSNVVVAINMFSSDTEAELNAVKKAAMDAGAFDAVICTHHAHGGK 495

Query: 361 GAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEMYT 420
           GAVDLGIAVQ+ACENVTQPL+FLYPLD+SIKEKI+ IA+SYGA+GVEYSE+AEK+IEMY+
Sbjct: 496 GAVDLGIAVQKACENVTQPLRFLYPLDISIKEKIEAIAKSYGAAGVEYSEQAEKKIEMYS 555

Query: 421 GQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGL 480
            QGFS LPICMAKTQYSFSHNAAEKGAP+GFILPIRDVR SIGAGFIYPLVGTMSTMPGL
Sbjct: 556 KQGFSNLPICMAKTQYSFSHNAAEKGAPSGFILPIRDVRGSIGAGFIYPLVGTMSTMPGL 615

Query: 481 PTRPCFYEIDVDTATGKVVGLS 502
           PTRPCF++ID+DT TGKV+GLS
Sbjct: 616 PTRPCFFDIDLDTTTGKVIGLS 637

Spinacia oleracea (taxid: 3562)
EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 3

>sp\|Q9SPK5\|FTHS_ARATH Formate--tetrahydrofolate ligase OS=Arabidopsis thaliana GN=THFS PE=1 SV=1	Back alignment and function description

>sp\|P27653\|C1TC_RAT C-1-tetrahydrofolate synthase, cytoplasmic OS=Rattus norvegicus GN=Mthfd1 PE=1 SV=3	Back alignment and function description

>sp\|P11586\|C1TC_HUMAN C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3	Back alignment and function description

>sp\|Q922D8\|C1TC_MOUSE C-1-tetrahydrofolate synthase, cytoplasmic OS=Mus musculus GN=Mthfd1 PE=1 SV=4	Back alignment and function description

>sp\|Q5R8P0\|C1TC_PONAB C-1-tetrahydrofolate synthase, cytoplasmic OS=Pongo abelii GN=MTHFD1 PE=2 SV=3	Back alignment and function description

>sp\|Q6UB35\|C1TM_HUMAN Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Homo sapiens GN=MTHFD1L PE=1 SV=1	Back alignment and function description

>sp\|Q0VCR7\|C1TM_BOVIN Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Bos taurus GN=MTHFD1L PE=2 SV=2	Back alignment and function description

>sp\|Q3V3R1\|C1TM_MOUSE Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Mus musculus GN=Mthfd1l PE=1 SV=2	Back alignment and function description

>sp\|Q27772\|C1TC_SPOFR C-1-tetrahydrofolate synthase, cytoplasmic OS=Spodoptera frugiperda PE=2 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		502
297847394		634	10-formyltetrahydrofolate synthetase [Ar	1.0	0.791	0.890	0.0
224052994		636	10-formyltetrahydrofolate synthetase [Po	1.0	0.789	0.914	0.0
2507455		637	RecName: Full=Formate--tetrahydrofolate	1.0	0.788	0.882	0.0
225435632		637	PREDICTED: formate--tetrahydrofolate lig	1.0	0.788	0.916	0.0
18403095		634	Formate--tetrahydrofolate ligase [Arabid	1.0	0.791	0.884	0.0
224073194		636	10-formyltetrahydrofolate synthetase [Po	1.0	0.789	0.918	0.0
357445035		743	Formate-tetrahydrofolate ligase [Medicag	1.0	0.675	0.884	0.0
449462581		636	PREDICTED: formate--tetrahydrofolate lig	1.0	0.789	0.916	0.0
356576871		636	PREDICTED: formate--tetrahydrofolate lig	1.0	0.789	0.894	0.0
356536528		636	PREDICTED: formate--tetrahydrofolate lig	1.0	0.789	0.884	0.0

>gi\|297847394\|ref\|XP_002891578.1\| 10-formyltetrahydrofolate synthetase [Arabidopsis lyrata subsp. lyrata] gi\|297337420\|gb\|EFH67837.1\| 10-formyltetrahydrofolate synthetase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/502 (89%), Positives = 483/502 (96%)

Query: 1   MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIM 60
           MDEFNLHLTGDIHAITA+NNLLAAAIDTRIFHE SQSDKALFNRLCPPNKEG+RSFS+IM
Sbjct: 133 MDEFNLHLTGDIHAITASNNLLAAAIDTRIFHETSQSDKALFNRLCPPNKEGKRSFSDIM 192

Query: 61  FRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK 120
           FRRL KLGISKT PE+LTPEEI +FARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK
Sbjct: 193 FRRLTKLGISKTSPEELTPEEIKKFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK 252

Query: 121 GMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTV 180
           GM RETGFDISVASEIMAVLALTTSL DMRERLGKMVIGNSKAGDPITADDLGVGGALTV
Sbjct: 253 GMTRETGFDISVASEIMAVLALTTSLGDMRERLGKMVIGNSKAGDPITADDLGVGGALTV 312

Query: 181 LMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240
           LMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFG+
Sbjct: 313 LMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGS 372

Query: 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEA 300
           DIG EKFMNIKCRYSGLTPQCA++VAT+RALKMHGGGP VVAG+PLD AY+NENV+LVEA
Sbjct: 373 DIGTEKFMNIKCRYSGLTPQCAIVVATVRALKMHGGGPDVVAGRPLDRAYVNENVSLVEA 432

Query: 301 GCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 360
           GCVNLA+HI+NTKAYG NVVVAVNMF+TD++AELNAVR  +M AGAFDAVVCSHHAHGGK
Sbjct: 433 GCVNLAKHISNTKAYGVNVVVAVNMFSTDTEAELNAVRKFSMDAGAFDAVVCSHHAHGGK 492

Query: 361 GAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEMYT 420
           GAVDLGIAV++AC+N+TQPL+FLYPLD+SIK+KI+ IA+SYGASGVEYS++AEKQIEMYT
Sbjct: 493 GAVDLGIAVEKACQNITQPLRFLYPLDISIKDKIEAIAKSYGASGVEYSDQAEKQIEMYT 552

Query: 421 GQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGL 480
            QGFS LPICM+KTQYSFSH+A++KGAP+GF+LPIRDVR SIGAGFIYPLVGTMSTMPGL
Sbjct: 553 QQGFSNLPICMSKTQYSFSHDASKKGAPSGFVLPIRDVRGSIGAGFIYPLVGTMSTMPGL 612

Query: 481 PTRPCFYEIDVDTATGKVVGLS 502
           PTRPCFYEID+DT TGKV GLS
Sbjct: 613 PTRPCFYEIDIDTETGKVRGLS 634

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224052994\|ref\|XP_002297654.1\| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] gi\|222844912\|gb\|EEE82459.1\| 10-formyltetrahydrofolate synthetase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|2507455\|sp\|P28723.3\|FTHS_SPIOL RecName: Full=Formate--tetrahydrofolate ligase; AltName: Full=10-formyletrahydrofolate synthetase; Short=FHS; Short=FTHFS; AltName: Full=Formyltetrahydrofolate synthetase gi\|170145\|gb\|AAA34046.1\| 10-formyltetrahydrofolate synthetase [Spinacia oleracea]	Back alignment and taxonomy information

>gi\|225435632\|ref\|XP_002285654.1\| PREDICTED: formate--tetrahydrofolate ligase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi|18403095|ref|NP_564571.1| Formate--tetrahydrofolate ligase [Arabidopsis thaliana] gi|68052257|sp|Q9SPK5.1|FTHS_ARATH RecName: Full=Formate--tetrahydrofolate ligase; AltName: Full=10-formyletrahydrofolate synthetase; Short=FHS; Short=FTHFS; AltName: Full=Formyltetrahydrofolate synthetase gi|5921663|gb|AAD56290.1|AF162279_1 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|9454559|gb|AAF87882.1|AC012561_15 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|12322329|gb|AAG51185.1|AC079279_6 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|15451114|gb|AAK96828.1| 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|20148441|gb|AAM10111.1| 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|332194434|gb|AEE32555.1| Formate--tetrahydrofolate ligase [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|224073194\|ref\|XP_002304017.1\| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] gi\|222841449\|gb\|EEE78996.1\| 10-formyltetrahydrofolate synthetase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357445035\|ref\|XP_003592795.1\| Formate-tetrahydrofolate ligase [Medicago truncatula] gi\|355481843\|gb\|AES63046.1\| Formate-tetrahydrofolate ligase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449462581\|ref\|XP_004149019.1\| PREDICTED: formate--tetrahydrofolate ligase-like [Cucumis sativus] gi\|449502199\|ref\|XP_004161571.1\| PREDICTED: formate--tetrahydrofolate ligase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356576871\|ref\|XP_003556553.1\| PREDICTED: formate--tetrahydrofolate ligase-like [Glycine max]	Back alignment and taxonomy information

>gi\|356536528\|ref\|XP_003536789.1\| PREDICTED: formate--tetrahydrofolate ligase-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		502
TAIR\|locus:2008101		634	THFS "10-formyltetrahydrofolat	1.0	0.791	0.828	5.5e-228
DICTYBASE\|DDB_G0290397		638	fthS "formyltetrahydrofolate s	1.0	0.786	0.667	9.3e-178
UNIPROTKB\|G3V2B8		935	MTHFD1 "C-1-tetrahydrofolate s	0.994	0.533	0.649	1.5e-168
UNIPROTKB\|P11586		935	MTHFD1 "C-1-tetrahydrofolate s	0.994	0.533	0.649	1.5e-168
UNIPROTKB\|F1SA74		930	MTHFD1 "Uncharacterized protei	0.994	0.536	0.645	4.7e-167
ZFIN\|ZDB-GENE-020905-4		934	mthfd1b "methylenetetrahydrofo	0.994	0.534	0.627	4.7e-167
MGI\|MGI:1342005		935	Mthfd1 "methylenetetrahydrofol	0.994	0.533	0.641	2.6e-166
UNIPROTKB\|E2R2W7		935	MTHFD1 "Uncharacterized protei	0.994	0.533	0.635	1.8e-165
UNIPROTKB\|A4FUD0		935	MTHFD1 "MTHFD1 protein" [Bos t	0.994	0.533	0.637	4.8e-165
RGD\|708531		935	Mthfd1 "methylenetetrahydrofol	0.994	0.533	0.635	4.8e-165

TAIR\|locus:2008101 THFS "10-formyltetrahydrofolate synthetase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2200 (779.5 bits), Expect = 5.5e-228, P = 5.5e-228
 Identities = 416/502 (82%), Positives = 451/502 (89%)

Query:     1 MDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIM 60
             MDEFNLHLTGDIH               RIFHE SQSDKALFNRLCPPNKEG+RSFS+IM
Sbjct:   133 MDEFNLHLTGDIHAITASNNLLAAAIDTRIFHETSQSDKALFNRLCPPNKEGKRSFSDIM 192

Query:    61 FRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK 120
             FRRL KLGISKT PE+LTPEEI +FARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK
Sbjct:   193 FRRLTKLGISKTSPEELTPEEIKKFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK 252

Query:   121 GMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTV 180
             GM RETGFDISVASEIMAVLALTTSL DMRERLGKMVIGNSKAGDPITADDLGVGGALTV
Sbjct:   253 GMTRETGFDISVASEIMAVLALTTSLGDMRERLGKMVIGNSKAGDPITADDLGVGGALTV 312

Query:   181 LMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240
             LMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFG+
Sbjct:   313 LMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGS 372

Query:   241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEA 300
             DIG EKFMNIKCRYSGLTPQCA++VAT+RALKMHGGGP VVAG+PLD AY++ENV+LVEA
Sbjct:   373 DIGTEKFMNIKCRYSGLTPQCAIVVATVRALKMHGGGPDVVAGRPLDRAYVSENVSLVEA 432

Query:   301 GCVNLARHIANTKAYGANVVVAVNMFATDSKXXXXXXXXXXXXXXXXXXVVCSHHAHGGK 360
             GCVNLA+HI+NTKAYG NV+VAVNMFATD++                  VVCSHHAH GK
Sbjct:   433 GCVNLAKHISNTKAYGVNVIVAVNMFATDTEAELNAVRKFSMDAGAFDAVVCSHHAHSGK 492

Query:   361 GAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEMYT 420
             GAVDLGIAV++AC+N+TQPL+FLYPLD+ IK+KI+ IA+SYGASGVEYS++AEKQIEMYT
Sbjct:   493 GAVDLGIAVEKACQNITQPLRFLYPLDIGIKDKIEAIAKSYGASGVEYSDQAEKQIEMYT 552

Query:   421 GQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGL 480
              QGFS LPICM+KTQYSFSH+A++KGAP+GF+LPIRDVR SIGAGFIYPLVGTMSTMPGL
Sbjct:   553 QQGFSNLPICMSKTQYSFSHDASKKGAPSGFVLPIRDVRGSIGAGFIYPLVGTMSTMPGL 612

Query:   481 PTRPCFYEIDVDTATGKVVGLS 502
             PTRPCFYEID+DT TGKV GLS
Sbjct:   613 PTRPCFYEIDIDTETGKVRGLS 634

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005507 "copper ion binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

DICTYBASE\|DDB_G0290397 fthS "formyltetrahydrofolate synthetase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V2B8 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|P11586 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SA74 MTHFD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-020905-4 mthfd1b "methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1342005 Mthfd1 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R2W7 MTHFD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|A4FUD0 MTHFD1 "MTHFD1 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|708531 Mthfd1 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P28723	FTHS_SPIOL	6, ., 3, ., 4, ., 3	0.8824	1.0	0.7880	N/A	no
Q9SPK5	FTHS_ARATH	6, ., 3, ., 4, ., 3	0.8844	1.0	0.7917	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.4	0.983
3rd Layer	3.5.4.9	0.824
3rd Layer	3.5.4	0.766
3rd Layer	1.5.1	0.766
3rd Layer	6.3.4.3	0.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.1__4130__AT1G50480.1	annotation not avaliable (634 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.3__1292__AT3G12290.1	annotation not avaliable (299 aa)	•	•	•		•	•	0.959
	fgenesh2_kg.4__1530__AT2G35040.1	annotation not avaliable (598 aa)	•		•		•	•	0.946
	fgenesh2_kg.1__1041__AT1G09830.1	annotation not avaliable (530 aa)	•		•		•	•	0.939
	fgenesh2_kg.1__1285__AT1G11860.2	annotation not avaliable (408 aa)	•		•		•	•	0.932
	fgenesh2_kg.6__3640__AT4G00620.1	annotation not avaliable (361 aa)	•	•			•	•	0.924
	fgenesh2_kg.4__1936__AT2G38660.3	annotation not avaliable (350 aa)	•	•			•	•	0.902
	fgenesh2_kg.6__3641__AT4G00600.1	annotation not avaliable (310 aa)	•	•			•	•	0.899
	scaffold_200152.1	annotation not avaliable (534 aa)			•			•	0.804
	fgenesh2_kg.6__1057__AT5G10920.1	annotation not avaliable (518 aa)			•			•	0.800
	scaffold_703259.1	annotation not avaliable (471 aa)			•	•	•	•	0.773

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		502
PLN02759		637	PLN02759, PLN02759, Formate--tetrahydrofolate liga	0.0
PTZ00386		625	PTZ00386, PTZ00386, formyl tetrahydrofolate synthe	0.0
pfam01268		557	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	0.0
cd00477		524	cd00477, FTHFS, Formyltetrahydrofolate synthetase	0.0
COG2759		554	COG2759, MIS1, Formyltetrahydrofolate synthetase [	0.0
PRK13505		557	PRK13505, PRK13505, formate--tetrahydrofolate liga	0.0
PRK13506		578	PRK13506, PRK13506, formate--tetrahydrofolate liga	0.0
PRK13507		587	PRK13507, PRK13507, formate--tetrahydrofolate liga	0.0

>gnl\|CDD\|178359 PLN02759, PLN02759, Formate--tetrahydrofolate ligase	Back alignment and domain information

 Score = 1020 bits (2639), Expect = 0.0
 Identities = 438/503 (87%), Positives = 474/503 (94%), Gaps = 1/503 (0%)

Query: 1   MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIM 60
           M+EFNLHLTGDIHAITAANNLLAAAIDTR+FHEA+QSDKALFNRLCP NKEG+RSF+ +M
Sbjct: 135 MEEFNLHLTGDIHAITAANNLLAAAIDTRVFHEATQSDKALFNRLCPANKEGKRSFAAVM 194

Query: 61  FRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK 120
           FRRLKKLGISKT P++LTPEE  +FARLDIDPASITWRRVMDVNDRFLRKIT+GQGPEEK
Sbjct: 195 FRRLKKLGISKTDPDELTPEERKKFARLDIDPASITWRRVMDVNDRFLRKITVGQGPEEK 254

Query: 121 GMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTV 180
           GM RETGFDI+VASEIMAVLALTTSLADMRERLGKMVIGNSKAG+P+TADDLGVGGALTV
Sbjct: 255 GMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEPVTADDLGVGGALTV 314

Query: 181 LMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240
           LMKDAI+PTLMQTLEGTPVLVHAGPFANIAHGNSSIVAD+IALKLVGPGGFVVTEAGFGA
Sbjct: 315 LMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADQIALKLVGPGGFVVTEAGFGA 374

Query: 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEA 300
           DIG EKFMNIKCRYSGL PQCAVIVAT+RALKMHGGGP VVAGKPLDHAY  ENV LVEA
Sbjct: 375 DIGTEKFMNIKCRYSGLKPQCAVIVATVRALKMHGGGPAVVAGKPLDHAYTTENVELVEA 434

Query: 301 GCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 360
           GCVNLARHI NTK+YG NVVVA+NMFATD++AEL AVR AA+AAGAFDAV+C+HHAHGGK
Sbjct: 435 GCVNLARHIENTKSYGVNVVVAINMFATDTEAELEAVRQAALAAGAFDAVLCTHHAHGGK 494

Query: 361 GAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMY 419
           GAVDLG AVQ+ACE  +QP KFLYPLD+SIKEKI+ IA+ SYGA GVEYSE+AE QIEMY
Sbjct: 495 GAVDLGEAVQKACEGNSQPFKFLYPLDISIKEKIEAIAKESYGADGVEYSEQAEAQIEMY 554

Query: 420 TGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPG 479
           T QGFS LPICMAKTQYSFSH+A+ KGAP+GF LPIRDVRAS+GAGFIYPLVGTMSTMPG
Sbjct: 555 TRQGFSNLPICMAKTQYSFSHDASLKGAPSGFTLPIRDVRASVGAGFIYPLVGTMSTMPG 614

Query: 480 LPTRPCFYEIDVDTATGKVVGLS 502
           LPTRPCFY+ID+DT TGKV+GLS
Sbjct: 615 LPTRPCFYDIDIDTETGKVLGLS 637

Length = 637

>gnl\|CDD\|240394 PTZ00386, PTZ00386, formyl tetrahydrofolate synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|216402 pfam01268, FTHFS, Formate--tetrahydrofolate ligase	Back alignment and domain information

>gnl\|CDD\|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate	Back alignment and domain information

>gnl\|CDD\|225354 COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|237403 PRK13505, PRK13505, formate--tetrahydrofolate ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|237404 PRK13506, PRK13506, formate--tetrahydrofolate ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|184098 PRK13507, PRK13507, formate--tetrahydrofolate ligase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		502
PLN02759		637	Formate--tetrahydrofolate ligase	100.0
PTZ00386		625	formyl tetrahydrofolate synthetase; Provisional	100.0
PRK13507		587	formate--tetrahydrofolate ligase; Provisional	100.0
PRK13506		578	formate--tetrahydrofolate ligase; Provisional	100.0
PF01268		557	FTHFS: Formate--tetrahydrofolate ligase; InterPro:	100.0
COG2759		554	MIS1 Formyltetrahydrofolate synthetase [Nucleotide	100.0
PRK13505		557	formate--tetrahydrofolate ligase; Provisional	100.0
cd00477		524	FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca	100.0
KOG4230		935	consensus C1-tetrahydrofolate synthase [Coenzyme t	100.0
PRK15452		443	putative protease; Provisional	90.27
PLN02591		250	tryptophan synthase	90.07
CHL00200		263	trpA tryptophan synthase alpha subunit; Provisiona	87.67
COG1149		284	MinD superfamily P-loop ATPase containing an inser	87.66
TIGR00262		256	trpA tryptophan synthase, alpha subunit. Tryptopha	86.88
PRK13111		258	trpA tryptophan synthase subunit alpha; Provisiona	86.48
PF02421		156	FeoB_N: Ferrous iron transport protein B; InterPro	85.78
TIGR00436		270	era GTP-binding protein Era. Era is an essential G	83.76
TIGR00475		581	selB selenocysteine-specific elongation factor Sel	82.85
cd04165		224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	82.67
COG0532		509	InfB Translation initiation factor 2 (IF-2; GTPase	82.24
PRK00089		292	era GTPase Era; Reviewed	82.0
COG0370		653	FeoB Fe2+ transport system protein B [Inorganic io	81.29

>PLN02759 Formate--tetrahydrofolate ligase	Back alignment and domain information

Probab=100.00  E-value=8.8e-235  Score=1841.66  Aligned_cols=502  Identities=87%  Similarity=1.345  Sum_probs=496.8

Q ss_pred             CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734            1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE   80 (502)
Q Consensus         1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~   80 (502)
                      ||||||||||||||||||||||+|+|||||||+|+|+|+.||+||||..++|+|+|++.||||||||||+|+||++||+|
T Consensus       135 me~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~l~~~l~p~~~~~~r~~~~~~~~rl~~l~i~~~~p~~lt~~  214 (637)
T PLN02759        135 MEEFNLHLTGDIHAITAANNLLAAAIDTRVFHEATQSDKALFNRLCPANKEGKRSFAAVMFRRLKKLGISKTDPDELTPE  214 (637)
T ss_pred             HhhhcccccchHHHHHHHHHHHHHHHHHHHhhccccchhhhhhccccccccccccccHHHHHHHHhhccCcCCccccCHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734           81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN  160 (502)
Q Consensus        81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~  160 (502)
                      |+++|++|+|||++|+||||||||||+||+|+||+|++.||+|||+|||||||||||||||||+|++|||+|||||||||
T Consensus       215 e~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~vGlgg~~~G~~Re~gFdITvASEiMAILcLa~dl~Dlk~Rlg~ivvg~  294 (637)
T PLN02759        215 ERKKFARLDIDPASITWRRVMDVNDRFLRKITVGQGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGN  294 (637)
T ss_pred             HhhhhhccCcCcceeEEEeeccccchhhhceeeCcCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccc
Q 010734          161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA  240 (502)
Q Consensus       161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFga  240 (502)
                      |+||+||||+||+++||||+|||||||||||||+||||||||||||||||||||||||||+||||+|++|||||||||||
T Consensus       295 ~~~g~pVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~ALkla~~~dyvVTEAGFGa  374 (637)
T PLN02759        295 SKAGEPVTADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADQIALKLVGPGGFVVTEAGFGA  374 (637)
T ss_pred             cCCCCceeHHHcCchHhHHHHHHhhhCccceeecCCCceEEecCCcccccccchHHHHHHHHHhhcCCCCeEEEecccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEE
Q 010734          241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV  320 (502)
Q Consensus       241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvV  320 (502)
                      |||||||||||||.+|++|||+||||||||||||||+++..+|+|||++|.+||+++|++||+||.|||||+++||+|||
T Consensus       375 DlGaEKF~dIkcR~~gl~P~a~VlVaTvRALK~hGG~~~~~pg~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvV  454 (637)
T PLN02759        375 DIGTEKFMNIKCRYSGLKPQCAVIVATVRALKMHGGGPAVVAGKPLDHAYTTENVELVEAGCVNLARHIENTKSYGVNVV  454 (637)
T ss_pred             CCchhheecccccccCCCCCEEEEEeehHHHHhcCCCCcccCCccchhhhcccCHHHHHhhhhhHHHHHHHHHHcCCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-
Q 010734          321 VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-  399 (502)
Q Consensus       321 VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-  399 (502)
                      ||||+|++||++||++|+++|+++|+.++++|+||++||+|++|||++|+++|++++++|+|||++++||+|||++||+ 
T Consensus       455 VaiN~F~~Dt~~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e~~~s~fk~LYd~~~sI~eKIetIAke  534 (637)
T PLN02759        455 VAINMFATDTEAELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACEGNSQPFKFLYPLDISIKEKIEAIAKE  534 (637)
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHhcCCCCccccCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999545999999999999999999999999986467899999999999999999999 


Q ss_pred             HhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCC
Q 010734          400 SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPG  479 (502)
Q Consensus       400 IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~I~tMPG  479 (502)
                      ||||++|+||++|++||++||++||++||||||||||||||||+++|+|+||+||||||++|+||||||++||+||||||
T Consensus       535 IYGAd~VefS~~AkkqLk~ie~lGfg~LPVCmAKTqyS~S~dp~l~G~P~gf~~~ir~~~~~~GAGFiv~l~G~i~tMPG  614 (637)
T PLN02759        535 SYGADGVEYSEQAEAQIEMYTRQGFSNLPICMAKTQYSFSHDASLKGAPSGFTLPIRDVRASVGAGFIYPLVGTMSTMPG  614 (637)
T ss_pred             ccCCCceEECHHHHHHHHHHHHcCCCCCCeeEecCCCCcCCChhhhCCCCCcEEEeeEEEEcCCCCEEEEecCccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeeeeeCCCCeEeecC
Q 010734          480 LPTRPCFYEIDVDTATGKVVGLS  502 (502)
Q Consensus       480 Lpk~Paa~~Idid~~~G~I~GL~  502 (502)
                      |||+|+|++||||+++|+|+|||
T Consensus       615 Lp~~Paa~~idid~~~G~i~GL~  637 (637)
T PLN02759        615 LPTRPCFYDIDIDTETGKVLGLS  637 (637)
T ss_pred             CCCCCcccccccccCCCEEecCC
Confidence            99999999999998999999998

>PTZ00386 formyl tetrahydrofolate synthetase; Provisional	Back alignment and domain information

>PRK13507 formate--tetrahydrofolate ligase; Provisional	Back alignment and domain information

>PRK13506 formate--tetrahydrofolate ligase; Provisional	Back alignment and domain information

>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6	Back alignment and domain information

>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK13505 formate--tetrahydrofolate ligase; Provisional	Back alignment and domain information

>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate	Back alignment and domain information

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]	Back alignment and domain information

>PRK15452 putative protease; Provisional	Back alignment and domain information

>PLN02591 tryptophan synthase	Back alignment and domain information

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional	Back alignment and domain information

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]	Back alignment and domain information

>TIGR00262 trpA tryptophan synthase, alpha subunit	Back alignment and domain information

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional	Back alignment and domain information

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions	Back alignment and domain information

>TIGR00436 era GTP-binding protein Era	Back alignment and domain information

>TIGR00475 selB selenocysteine-specific elongation factor SelB	Back alignment and domain information

>cd04165 GTPBP1_like GTPBP1-like	Back alignment and domain information

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00089 era GTPase Era; Reviewed	Back alignment and domain information

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		502
1fpm_A		557	Monovalent Cation Binding Sites In N10-formyltetrah		1e-105
1eg7_A		557	The Crystal Structure Of Formyltetrahydrofolate Syn		1e-104
3do6_A		543	Crystal Structure Of Putative Formyltetrahydrofolat		6e-81
2eo2_A		71	Solution Structure Of The Insertion Region (510-573		5e-16

>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In N10-formyltetrahydrofolate Synthetase From Moorella Thermoacetica Length = 557

Back alignment and structure

Iteration: 1

Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/415 (48%), Positives = 258/415 (62%), Gaps = 16/415 (3%) Query: 88 LDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLA 147 L+IDP +ITWRRV+D+NDR LR I IG G + G+ RETGFDISVASE+MA L L + L Sbjct: 157 LNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLM 216 Query: 148 DMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFA 207 D++ER ++V+G + G P+TA DL G++ +LMKDAI P L+QTLE TP +H GPFA Sbjct: 217 DLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFA 276 Query: 208 NIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVAT 267 NIAHG +SI+A K ALKL +VVTEAGFGAD+GAEKF ++KCRY+G P VIVAT Sbjct: 277 NIAHGCNSIIATKTALKL---ADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVAT 333 Query: 268 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA 327 +RALKMHGG P+ EN+ + G NL +HI N +G VVA+N F Sbjct: 334 VRALKMHGGVPK--------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFP 385 Query: 328 TDSKXXXXXXXXXXXXXXXXXXVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 387 TD++ V A GG+G ++L V + E+ LY LD Sbjct: 386 TDTEAELNLLYELCAKAGAE---VALSWAKGGEGGLELARKVLQTLESRPSNFHVLYNLD 442 Query: 388 VSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKG 446 +SIK+KI IA YGA GV Y+ EA+K I+ Y G+ LP+ MAKTQYSFS + + G Sbjct: 443 LSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLG 502 Query: 447 APTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGL 501 P F + +R+VR S G I P+ G + TMPGLP RP ID+D A G + GL Sbjct: 503 RPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDID-ADGVITGL 556

PyMOL of 1fpm

>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase From Moorella Thermoacetica Length = 557

Back alignment and structure

>pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A Resolution Length = 543

Back alignment and structure

>pdb|2EO2|A Chain A, Solution Structure Of The Insertion Region (510-573) Of Fthfs Domain From Mouse Methylenetetrahydrofolate Dehydrogenase (Nadp+ Dependent) 1-Like Protein Length = 71

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		502
3do6_A		543	Formate--tetrahydrofolate ligase; TM1766, putative	0.0
3pzx_A		557	Formate--tetrahydrofolate ligase; HET: TOE; 2.20A	0.0
2eo2_A		71	Adult MALE hypothalamus cDNA, riken FULL-length en	3e-37

>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} Length = 543	Back alignment and structure

 Score =  678 bits (1751), Expect = 0.0
 Identities = 194/503 (38%), Positives = 275/503 (54%), Gaps = 68/503 (13%)

Query: 1   MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIM 60
            DE NLH TGD+HA+ +A+NLLAA +D+ I H          N L               
Sbjct: 108 SDEINLHFTGDMHAVASAHNLLAAVLDSHIKHG---------NEL--------------- 143

Query: 61  FRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK 120
                                        ID   + W+R MD+NDR LR I IG G    
Sbjct: 144 ----------------------------KIDITRVFWKRTMDMNDRALRSIVIGLGGSAN 175

Query: 121 GMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTV 180
           G  RE  F I+ ASE+MA+LAL+ ++ D++ERLGK+++        +   DLG+ GA+ V
Sbjct: 176 GFPREDSFIITAASEVMAILALSENMKDLKERLGKIIVALDADRKIVRISDLGIQGAMAV 235

Query: 181 LMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240
           L+KDAINP L+QT EGTP L+H GPFANIAHG +SI+A K+A+KL     + VTEAGFGA
Sbjct: 236 LLKDAINPNLVQTTEGTPALIHCGPFANIAHGTNSIIATKMAMKL---SEYTVTEAGFGA 292

Query: 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEA 300
           D+GAEKF++   R  G  P  AV+VAT+RALK HGG                EN+  ++ 
Sbjct: 293 DLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANL--------KNIHEENLEALKE 344

Query: 301 GCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 360
           G  NL  H+ N + +   VVVA+N F+TD++ E+  V       G     V      G +
Sbjct: 345 GFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGV-RVAVSEVFKKGSE 403

Query: 361 GAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMY 419
           G V+L  AV  A ++      +LY ++  +++KI+ +A+  Y A  VE+S+ A+  ++  
Sbjct: 404 GGVELAKAVAEAAKD--VEPAYLYEMNDPVEKKIEILAKEIYRAGRVEFSDTAKNALKFI 461

Query: 420 TGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPG 479
              GF  LP+ +AKT  S SH+ + +GAP G+   + D+  S GAGF+  L G ++ MPG
Sbjct: 462 KKHGFDELPVIVAKTPKSISHDPSLRGAPEGYTFVVSDLFVSAGAGFVVALSGDINLMPG 521

Query: 480 LPTRPCFYEIDVDTATGKVVGLS 502
           LP +P    +DVD  +G +VG+S
Sbjct: 522 LPKKPNALNMDVD-DSGNIVGVS 543

PyMOL of 3do6

>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 71	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		502
3do6_A		543	Formate--tetrahydrofolate ligase; TM1766, putative	100.0
3pzx_A		557	Formate--tetrahydrofolate ligase; HET: TOE; 2.20A	100.0
2eo2_A		71	Adult MALE hypothalamus cDNA, riken FULL-length en	99.95
3nav_A		271	Tryptophan synthase alpha chain; alpha subunit, st	86.64
2efe_B		181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	85.53
3vni_A		294	Xylose isomerase domain protein TIM barrel; D-psic	85.21
3a1s_A		258	Iron(II) transport protein B; FEOB, iron transport	82.87
3iev_A		308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	82.27
3qxb_A		316	Putative xylose isomerase; structural genomics, jo	82.13
2gf9_A		189	RAS-related protein RAB-3D; G-protein, structural	80.37
2ekc_A		262	AQ_1548, tryptophan synthase alpha chain; structur	80.24
2ce2_X		166	GTPase HRAS; signaling protein, guanine nucleotide	80.16
2yc2_C		208	IFT27, small RAB-related GTPase; transport protein	80.14
2wjg_A		188	FEOB, ferrous iron transport protein B homolog; me	80.06

>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0	Back alignment and structure

Probab=100.00  E-value=1.7e-219  Score=1698.44  Aligned_cols=435  Identities=44%  Similarity=0.755  Sum_probs=430.7

Q ss_pred             CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734            1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE   80 (502)
Q Consensus         1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~   80 (502)
                      ||||||||||||||||||||||||+|||||||||                                              
T Consensus       108 MediNLHfTGD~HAItaAnNLLaA~iDn~i~~gn----------------------------------------------  141 (543)
T 3do6_A          108 SDEINLHFTGDMHAVASAHNLLAAVLDSHIKHGN----------------------------------------------  141 (543)
T ss_dssp             HHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC----------------------------------------------
T ss_pred             hhhccccccchHHHHHHHHHHHHHHHHHHHhccC----------------------------------------------
Confidence            8999999999999999999999999999999999                                              


Q ss_pred             HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734           81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN  160 (502)
Q Consensus        81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~  160 (502)
                            +|+|||++|+||||||||||+||+|++|||++.||+|||+|||||||||||||||||+|++|||+|||||||||
T Consensus       142 ------~L~IDp~~I~WkRv~D~NDR~LR~IvvGlGg~~~G~~re~gFdITvASEiMAILcLa~dl~DLk~Rlg~ivvay  215 (543)
T 3do6_A          142 ------ELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFPREDSFIITAASEVMAILALSENMKDLKERLGKIIVAL  215 (543)
T ss_dssp             ------TTCEEEEEECCCEEESSCCGGGSSEEESCSSGGGCCCEEECEEEGGGSHHHHHHHHCSSHHHHHHHHHTCEEEE
T ss_pred             ------ccCCCCCeEEEEecccccCceeeeeEECCCCCCCCCccccceeEEehhhhhhHHHhcCCHHHHHHHhcCEEEEE
Confidence                  79999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccc
Q 010734          161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA  240 (502)
Q Consensus       161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFga  240 (502)
                      |+||+||||+||+++||||+||||||||||||||||||||||||||||||||||||||||+||||+   |||||||||||
T Consensus       216 ~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHgGPFANIAHGcnSviAtk~ALkla---DyvVTEAGFGA  292 (543)
T 3do6_A          216 DADRKIVRISDLGIQGAMAVLLKDAINPNLVQTTEGTPALIHCGPFANIAHGTNSIIATKMAMKLS---EYTVTEAGFGA  292 (543)
T ss_dssp             ETTSCEEEHHHHTCHHHHHHHTTTTTSCEEEEETTSCEEEECCCCCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSST
T ss_pred             cCCCCeEehHhcccchhHHHHHHhhcCccceeeccCCeeEEecCccccccccchHHHHHHHHHhcc---CeEEEeccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999   99999999999


Q ss_pred             cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEE
Q 010734          241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV  320 (502)
Q Consensus       241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvV  320 (502)
                      |||||||||||||.+||+||||||||||||||||||+++        ++|.+||+++|++||+||+|||||+++||+|||
T Consensus       293 DlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~~--------~~l~~enl~al~~G~~NL~kHIen~~~fGvpvV  364 (543)
T 3do6_A          293 DLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANL--------KNIHEENLEALKEGFKNLRVHVENLRKFNLPVV  364 (543)
T ss_dssp             TTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCG--------GGTTSCCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             ccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCCh--------hhcCccCHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence            999999999999999999999999999999999999986        678899999999999999999999999999999


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-
Q 010734          321 VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-  399 (502)
Q Consensus       321 VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-  399 (502)
                      ||||+|++||++|+++|+++|+++|+ ++++|+||++||+|++|||++|+++|+  +++|+|||++++||+|||++||+ 
T Consensus       365 VaiN~F~tDT~aEi~~v~~~~~~~G~-~~~~s~~wa~GG~G~~~LA~~Vv~~~e--~~~f~~lY~~~~~i~eKI~~Ia~~  441 (543)
T 3do6_A          365 VALNRFSTDTEKEIAYVVKECEKLGV-RVAVSEVFKKGSEGGVELAKAVAEAAK--DVEPAYLYEMNDPVEKKIEILAKE  441 (543)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHTTTC-EEEEECHHHHGGGGSHHHHHHHHHHCC--CCCCCCSSCTTSCHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHcCC-CEEEechhhccchhHHHHHHHHHHHhc--CCCcccccCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999 599999999999999999999999998  57899999999999999999999 


Q ss_pred             HhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCC
Q 010734          400 SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPG  479 (502)
Q Consensus       400 IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~I~tMPG  479 (502)
                      ||||++|+||++|++||++||++||++||||||||||||||||+++|+|+||+||||||++|+|||||||+||+||||||
T Consensus       442 iYGA~~V~~s~~A~~~l~~~~~~G~~~lPvCmAKTqySlS~dp~~~G~P~gf~~~irdv~~saGAGFiv~l~G~i~tMPG  521 (543)
T 3do6_A          442 IYRAGRVEFSDTAKNALKFIKKHGFDELPVIVAKTPKSISHDPSLRGAPEGYTFVVSDLFVSAGAGFVVALSGDINLMPG  521 (543)
T ss_dssp             TSCCSEEEECHHHHHHHHHHHHTTCTTSCEEEECCSSSSSSCTTCCSCCCSCEEEECEEEEETTTTEEEEECSCCCSSCC
T ss_pred             HcCCCeEEECHHHHHHHHHHHhcCCCCCCEEEEccCcCcccCccccCCCCCceEEeeEEEEcCCCcEEEEEeCcceeCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeeeeeCCCCeEeecC
Q 010734          480 LPTRPCFYEIDVDTATGKVVGLS  502 (502)
Q Consensus       480 Lpk~Paa~~Idid~~~G~I~GL~  502 (502)
                      |||+|+|++|||| ++|+|+|||
T Consensus       522 Lp~~Paa~~idvd-~~G~i~GLf  543 (543)
T 3do6_A          522 LPKKPNALNMDVD-DSGNIVGVS  543 (543)
T ss_dssp             CCSSCGGGGCEEC-TTSCEESCC
T ss_pred             CCCCccceeCcCC-CCCCEeeCC
Confidence            9999999999999 999999998

PyMOL of 3do6

>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4	Back alignment and structure

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*	Back alignment and structure

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*	Back alignment and structure

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A	Back alignment and structure

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*	Back alignment and structure

>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}	Back alignment and structure

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*	Back alignment and structure

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}	Back alignment and structure

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...	Back alignment and structure

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C	Back alignment and structure

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		502
d1eg7a_		549	c.37.1.10 (A:) Formyltetrahydrofolate synthetase {	0.0

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} Length = 549	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

 Score =  522 bits (1346), Expect = 0.0
 Identities = 223/501 (44%), Positives = 286/501 (57%), Gaps = 68/501 (13%)

Query: 1   MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIM 60
           M++ NLH TGDIHA+T A+NLLAA +D  +                              
Sbjct: 116 MEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGN-------------------------- 149

Query: 61  FRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK 120
                                      L+IDP +ITWRRV+D+N+R LR I IG G +  
Sbjct: 150 --------------------------VLNIDPRTITWRRVIDLNERALRNIVIGLGGKAN 183

Query: 121 GMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTV 180
           G+ RETGFDISVASE+MA L L + L D++ER  + V+G +  G P+TA DL   G++ +
Sbjct: 184 GVPRETGFDISVASEVMACLCLASDLMDLKERFSRKVVGYTYDGKPVTAGDLEAQGSMAL 243

Query: 181 LMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240
           LMKDAI P L+QTLE TP  +H GPFANIAHG +SI+A K ALKL     +VVTEAGFGA
Sbjct: 244 LMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKL---ADYVVTEAGFGA 300

Query: 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEA 300
           D+GAEKF ++KCRY+G  P   VIVAT+RALKMHGG P              EN+  +  
Sbjct: 301 DLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP--------KSDLATENLEALRE 352

Query: 301 GCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 360
           G  NL +HI N   +G   VVA+N F TD++AELN +      A    A V    A GG+
Sbjct: 353 GFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKA---GAEVALSWAKGGE 409

Query: 361 GAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMY 419
           G ++L   V +  E+       LY LD+SIK+KI  IA   YGA GV Y+ EA+K I+ Y
Sbjct: 410 GGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRY 469

Query: 420 TGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPG 479
              G+  LP+ MAKTQYSFS +  + G P  F + +R+VR S G   I P+ G + TMPG
Sbjct: 470 ESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPG 529

Query: 480 LPTRPCFYEIDVDTATGKVVG 500
           LP RP    ID+D A G + G
Sbjct: 530 LPKRPAACNIDID-ADGVITG 549

PyMOL of d1eg7a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		502
d1eg7a_		549	Formyltetrahydrofolate synthetase {Moorella thermo	100.0
d1b5ta_		275	Methylenetetrahydrofolate reductase {Escherichia c	92.21
d1mkya1		171	Probable GTPase Der, N-terminal and middle domains	90.09
d1wb1a4		179	Elongation factor SelB, N-terminal domain {Methano	88.86
d1v93a_		292	Methylenetetrahydrofolate reductase {Thermus therm	86.9
d1lnza2		185	Obg GTP-binding protein middle domain {Bacillus su	85.12
d1udxa2		180	Obg GTP-binding protein middle domain {Thermus the	83.15
d1svia_		195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	82.3

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=100.00  E-value=8e-214  Score=1669.44  Aligned_cols=433  Identities=52%  Similarity=0.868  Sum_probs=426.8

Q ss_pred             CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734            1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE   80 (502)
Q Consensus         1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~   80 (502)
                      ||||||||||||||||||||||+|+|||||||+|                                              
T Consensus       116 me~inLhftGD~hAitaA~NLl~A~idn~i~~gn----------------------------------------------  149 (549)
T d1eg7a_         116 MEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGN----------------------------------------------  149 (549)
T ss_dssp             HHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC----------------------------------------------
T ss_pred             chhhhcccCCcHHHHHHHHHHHHHHHHhhhcccc----------------------------------------------
Confidence            8999999999999999999999999999999999                                              


Q ss_pred             HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734           81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN  160 (502)
Q Consensus        81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~  160 (502)
                            +|+|||++|+||||||||||+||+|+||+|++.+|+|||+|||||||||||||||||+|++|||+|||||||||
T Consensus       150 ------~L~iDp~~I~w~Rv~D~NDR~LR~i~vglgg~~~G~~r~~gFdIT~ASEvMAIl~La~~l~DLr~Rlg~ivv~~  223 (549)
T d1eg7a_         150 ------VLNIDPRTITWRRVIDLNERALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRKVVGY  223 (549)
T ss_dssp             ------TTCBCGGGCCCCEEESSCCGGGSSEEESCSSTTSCCCEEECEEEGGGSHHHHHHHHCSSHHHHHHHHHTCEEEE
T ss_pred             ------cCCCCCceeeeceeecchhhhhhheEEeccccCCCcceecccccchhhhheeeeeecCCHHHHHHhhcCEEeee
Confidence                  79999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccc
Q 010734          161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA  240 (502)
Q Consensus       161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFga  240 (502)
                      |++|+||||+||+++||||+|||||||||||||+||||+|||||||||||||||||||||+||+|+   |||||||||||
T Consensus       224 ~~~g~pv~a~DL~~~GAm~~LLkdAi~PNLvQT~EgtPa~vHgGPFANIAhG~nSviAt~~al~la---dyvVTEAGFGa  300 (549)
T d1eg7a_         224 TYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLA---DYVVTEAGFGA  300 (549)
T ss_dssp             BTTSCEEETGGGTCHHHHHHHTTTTTSCEEEEETTCCEEEECCCCCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSCT
T ss_pred             cCCCCCcchhhcccchhHHHHHHHHHHhhhheeccCCceeeecCCccccccccchHHHHHHHhhcC---CeEEEeccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999   99999999999


Q ss_pred             cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEE
Q 010734          241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV  320 (502)
Q Consensus       241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvV  320 (502)
                      |||||||||||||++|++|||+|||||+||||||||+++        ++|.+||++||++||+||+|||||+++||+|||
T Consensus       301 DlGaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~~--------~~l~~eNl~Al~~G~~NL~rHIeNi~~fGlpvV  372 (549)
T d1eg7a_         301 DLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPK--------SDLATENLEALREGFANLEKHIENIGKFGVPAV  372 (549)
T ss_dssp             TTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHTTTCCG--------GGTTSCCHHHHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred             CccchhhhccccccCCCCCceEEEEeehhhhhhcCCCCh--------HHcCcccHHHHHHHHHHHHHHHHhhhhcCCCeE
Confidence            999999999999999999999999999999999999985        778899999999999999999999999999999


Q ss_pred             EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-
Q 010734          321 VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-  399 (502)
Q Consensus       321 VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-  399 (502)
                      ||||+|++||++||++|+++|++.|++   +|.+|++||+|++|||++|++++++++++|+|||++++||+|||++||+ 
T Consensus       373 VAIN~F~tDTd~Ei~~i~~~~~~~g~~---~a~~wa~GG~Ga~dLA~~Vv~a~e~~~~~f~~LY~~~~~l~eKIe~IA~~  449 (549)
T d1eg7a_         373 VAINAFPTDTEAELNLLYELCAKAGAE---VALSWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATE  449 (549)
T ss_dssp             EEEECCTTCCHHHHHHHHHHTTTSEEE---EECCTTTGGGGGHHHHHHHHHHHHHSCCCCCCSSCTTSCHHHHHHHHHHH
T ss_pred             EEeccCCccchhHHHHHHHHHhhcCcc---eeeecccCccchHHHHHHHHHHHhcccccccccCCccchHHHHHHHHHHH
Confidence            999999999999999999999999984   4678999999999999999999988788999999999999999999999 


Q ss_pred             HhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCC
Q 010734          400 SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPG  479 (502)
Q Consensus       400 IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~I~tMPG  479 (502)
                      ||||++|+||++|++||++||++||++||||||||||||||||+++|+|+||+|||||||+|+||||||++||+||||||
T Consensus       450 IYGA~~V~~S~~A~kqL~~~e~~G~~~LPVCmAKTqySfS~Dp~l~GaP~gf~l~VrevrlsaGAGFiV~i~G~ImTMPG  529 (549)
T d1eg7a_         450 IYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPG  529 (549)
T ss_dssp             TTCCSEEEECHHHHHHHHHHHHTTCTTSCEEEECCTTSSSSCTTCCSCCCSCEEEECCCEEETTTEEEEECSSTTCCSCC
T ss_pred             hcCCCceeeCHHHHHHHHHHHHCCCCCCCEEEEeCCCCcCCCcccCCCCCCCeEEeeEEEEcCCceEEEEEecccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeeeeeCCCCeEee
Q 010734          480 LPTRPCFYEIDVDTATGKVVG  500 (502)
Q Consensus       480 Lpk~Paa~~Idid~~~G~I~G  500 (502)
                      |||+|||++|||| ++|+|+|
T Consensus       530 LPk~PaA~~Idid-~~G~I~G  549 (549)
T d1eg7a_         530 LPKRPAACNIDID-ADGVITG  549 (549)
T ss_dssp             CCSSCGGGTCEEC-SSSEECC
T ss_pred             CCCCccccccccC-CCCCeeC
Confidence            9999999999999 8999998

PyMOL of d1eg7a_

>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}	Back information, alignment and structure

>d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure