Citrus Sinensis ID: 010738

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
Protein Sequence
MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRILGPLSNRYGISTTMYGAINHWHLKAWKTGRTEYQAVRNTSSPASCVLTFIKKENQVAIQNVPGFCFCAQTCPIHAIPMEALCRTGVERGSTTCSWPARTNEQRGKCLELACRLRQTRGEV
Secondary Structure (PSIPRED)
cHHHHHHHHccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccEEcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccHHHHcccccccccccccccccccccccccEEEEEEcccccccccccEEEccccEEEEEcccccEEEEEcccccccccccccEEEccEEEcccccEEEcccccEEEccccccccccccEEEEEEEccEEEEEccccccccccccccccccccEEEEEEEEEEccccHHEcccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccEEEEEcccccEEEEEEEEcccEEEEccccEEEEEEEEEEcccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccHEEEccccccccccccccEEEEEEEccccccHHHHcHHHHHccccccccccccccccEEEHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccccccccccccccEEEEEcHHHccccccccEEEccccEEEEEcccccEEEEccccccccccccccEEEccEEEEccccEEEcccccEEEccccccccccEEEccEEEEccEEEEEccccccccccccccccccccccccHEEEccccHHHHHHHccccccccEEccccccccccccccccccccccEEEEEcccccccHHHHHccccccccccEEEccccccEEEEEEEcccccccccccEEEEccccccccccccEEEEEEccccccccccccccccHHccHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MTAIATAAALSlpislyrpakintkksvrgGFRVFALFgeegglvdkksawstlfdvedprskvpqckgkfldVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDrllqdrhtsgtdqtcaspstskqsldivkgklprkslnvsgpvqpyntrlknfwfpvafstdlkddtmvpfdcfeepwvifrgkdgipgcvqntcahracplhlgsvnegriqcpyhgweystdgkcekmpstqlrnvkikslpcfeqegmiwiwpgdepptatipcllppsgfeIHAEIVMELPIEHGLLLDNLLdlahapfthtstfakgwsvprilgplsnrygisttmYGAINHWHLKAWKTGRTEYQavrntsspasCVLTFIKKENQVAIQNvpgfcfcaqtcpihaipmealcrtgvergsttcswpartneqrGKCLELACRLRQTRGEV
Flexible Loop (DISEMBL)
MTAIATaaalslpislyrpakintkksvrGGFRVFALFgeegglvdkKSAWSTLFDvedprskvpqckgkfldvnQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTsgtdqtcaspstskqsldivkgklprkslnvsgpvqpyntrlknFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHtstfakgwsvpriLGPLSNRYGISTTMYGAINHWHLKAWKTGRTEYQAVRNTSSPASCVLTFIKKENQVAIQNVPGFCFCAQTCPIHAIPMEALCRTGVERGSTTcswpartneqrgkcLELAcrlrqtrgev
Low Complexity Region (SEG)
MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGllldnlldlAHAPFTHTSTFAKGWSVPRILGPLSNRYGISTTMYGAINHWHLKAWKTGRTEYQAVRNTSSPASCVLTFIKKENQVAIQNVPGFCFCAQTCPIHAIPMEALCRTGVERGSTTCSWPARTNEQRGKCLELACRLRQTRGEV
Disordered region (IsUnstruct)
*****TAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLL**************************************PVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRILGPLSNRYGISTTMYGAINHWHLKAWKTGRTEYQAVRNTSSPASCVLTFIKKENQVAIQNVPGFCFCAQTCPIHAIPMEALCRTGVERGSTTCSWPARTNEQRGKCLELACR********
Disordered Region (DISOPRED)
*****TA*ALSLPISLYRPAKI***KSVRGGFRVFA*******************DVED********KGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQ*HRQVHISEARVATALDKLAYMEA*************************************************YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRILGPLSNRYGISTTMYGAINHWHLKAWKTGRTEYQAVRNTSSPASCVLTFIKKENQVAIQNVPGFCFCAQTCPIHAIPMEALCRTGVERGSTTCSWPARTNEQRGKCLELACRLR*T****
Disordered Region (DISEMBL)
MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDR******************LDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRILGPLSNRYGISTTMYGAINHWHLKAWKTGRTEYQAVRNTSSPASCVLTFIKKENQVAIQNVPGFCFCAQTCPIHAIPMEALCRTGVERGSTTCSWPARTNEQRGKCLELACRLRQTRGEV
Disordered Region (DISPRO)
*TAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ*****************************************YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRILGPLSNRYGISTTMYGAINHWHLKAWKTGRTEYQAVRNTSSPASCVLTFIKKENQVAIQNVPGFCFCAQTCPIHAIPMEALCRTGVERGSTTCSWPARTNEQRGKCLELACRLRQT****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxVATALDKLAYMEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRILGPLSNRYGISTTMYGAINHWHLKAWKTGRTEYQAVRNTSSPASCVLTFIKKENQVAIQNVPGFCFCAQTCPIHAIPMEALCRTGVERGSTTCSWPARTNEQRGKCLELACRLRQTRGEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	502	2.2.26 [Sep-21-2011]
Q9MBA1	536	Chlorophyllide a oxygenas	no	no	0.776	0.727	0.716	1e-161
Q8S7E1	541	Chlorophyllide a oxygenas	yes	no	0.772	0.717	0.718	1e-160
Q9ZWM5	645	Chlorophyllide a oxygenas	N/A	no	0.350	0.272	0.584	2e-63
Q9XJ38	463	Chlorophyllide a oxygenas	N/A	no	0.511	0.555	0.394	2e-55
Q9SK50	539	Protein TIC 55, chloropla	no	no	0.300	0.280	0.293	6e-19
O49931	553	Protein TIC 55, chloropla	N/A	no	0.318	0.289	0.289	7e-19
O05616	354	Vanillate O-demethylase o	N/A	no	0.314	0.446	0.323	5e-17
P12609	329	Vanillate O-demethylase o	N/A	no	0.266	0.407	0.309	9e-17
P94679	347	Toluene-4-sulfonate monoo	no	no	0.316	0.458	0.285	8e-15
Q44256	432	3-chlorobenzoate-3,4-diox	no	no	0.247	0.287	0.323	4e-14

>sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1

 Score =  567 bits (1461), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 281/392 (71%), Positives = 328/392 (83%), Gaps = 2/392 (0%)

Query: 3   AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           A+ + +ALSLPIS    R + ++ KK V+G FRVFA+FG+E GLV+KKS W  LFDVEDP
Sbjct: 4   AVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDP 63

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK P  KGKFLDVNQA+EVAR+DIQY DWRARQD+LTIM+LH+KVV+VLNPLAR+YKSI
Sbjct: 64  RSKAPPYKGKFLDVNQAIEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSI 123

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KKELA LQE+L++AH+QVHISEARV+TALDKLA+ME LVNDRLL  R  +  D+  +
Sbjct: 124 GTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPSS 183

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           S + S   LD  K     KSLNVSGPV PY+  LKNFW+PVAF+ DLK DTMVP +CFE+
Sbjct: 184 STTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQ 243

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQCPYHGWEYSTDG+C+KMPST+L 
Sbjct: 244 PWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLL 303

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
            VKIKSLPC EQEGMIWIWPGDEPP   +P L PPSGF IHAE+VM+LP+EHGLLLDNLL
Sbjct: 304 KVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLL 363

Query: 361 DLAHAPFTHTSTFAKGWSVPRILGPLSNRYGI 392
           DLAHAPFTHTSTFAKGWSVP ++  L+   G+
Sbjct: 364 DLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGL 395

Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 2EC: 2

>sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica GN=CAO PE=2 SV=1

 Score =  566 bits (1459), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 284/395 (71%), Positives = 330/395 (83%), Gaps = 7/395 (1%)

Query: 4   IATAAALSL-PISLYRPA-KINTKKSV--RGGFRVFALFGEEGGLVDKKSAWSTLFDVED 59
           + T A+LSL P  L +P+ +  ++K V   GG +V+A+ G++G    K +AW  LF V+D
Sbjct: 1   MTTVASLSLLPHLLIKPSFRCCSRKGVGRYGGIKVYAVLGDDGADYAKNNAWEALFHVDD 60

Query: 60  PRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKS 119
           P  +VP  KGKFLDVNQALEV R+DIQYCDWRARQD+LTIM+LH KVVEVLNPLAR++KS
Sbjct: 61  PGPRVPIAKGKFLDVNQALEVVRFDIQYCDWRARQDLLTIMVLHNKVVEVLNPLAREFKS 120

Query: 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTC 179
           IGT++KELAELQE+LA+AH QVH+SE RV++ALDKLA ME LVNDRLLQD  +S +   C
Sbjct: 121 IGTLRKELAELQEELAKAHNQVHLSETRVSSALDKLAQMETLVNDRLLQDGGSSASTAEC 180

Query: 180 AS--PSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDC 237
            S  PSTS  S  +V  K PR+SLNVSGPVQPYN  LKNFW+PVAFS+DLKDDTMVP DC
Sbjct: 181 TSLAPSTSSAS-RVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDC 239

Query: 238 FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 297
           FEE WVIFRGKDG PGCV NTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST
Sbjct: 240 FEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 299

Query: 298 QLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLD 357
           ++ NV+I+SLPCFEQEGM+WIWPG++PP +TIP LLPPSGF IHAEIVMELP+EHGLLLD
Sbjct: 300 KMLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGLLLD 359

Query: 358 NLLDLAHAPFTHTSTFAKGWSVPRILGPLSNRYGI 392
           NLLDLAHAPFTHTSTFAKGWSVP ++  L+   G+
Sbjct: 360 NLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPSSGL 394

Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2

 Score =  243 bits (621), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 104/178 (58%), Positives = 134/178 (75%), Gaps = 2/178 (1%)

Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
           L+NFW+P  FS  L  DT+VPF+ F EPWV+FR + G P C+++ CAHR CPL LG V E
Sbjct: 301 LRNFWYPAEFSARLPKDTLVPFELFGEPWVMFRDEKGQPSCIRDECAHRGCPLSLGKVVE 360

Query: 274 GRIQCPYHGWEYSTDGKCEKMPSTQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 332
           G++ CPYHGWE++ DG C KMPST   RNV + +LPC E++G IW+WPGD  P  T+P  
Sbjct: 361 GQVMCPYHGWEFNGDGACTKMPSTPFCRNVGVAALPCAEKDGFIWVWPGDGLPAETLPDF 420

Query: 333 L-PPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRILGPLSNR 389
             PP GF IHAEI++++P+EHGLL++NLLDLAHAPFTHTSTFA+GW VP  +   +N+
Sbjct: 421 AQPPEGFLIHAEIMVDVPVEHGLLIENLLDLAHAPFTHTSTFARGWPVPDFVKFHANK 478

Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a.

Chlamydomonas reinhardtii (taxid: 3055)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1

 Score =  217 bits (552), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/299 (39%), Positives = 173/299 (57%), Gaps = 42/299 (14%)

Query: 123 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA----LVNDRL------------ 166
           M+ +L  LQ+++++A  ++  SEARVA  L ++  ++A    L   RL            
Sbjct: 1   MQSKLLGLQDEISEARDKLRTSEARVAQNLKRVDELKAEAASLERMRLASSSSTDSTVSI 60

Query: 167 ----------------------LQDR-HTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNV 203
                                 +Q R   SG   T       + S  + +G  P+ S  +
Sbjct: 61  ASRGGAAVAATTSVPDHVEREGIQSRVRGSGMASTSYPSHVPQPSQAVRRGPKPKDSRRL 120

Query: 204 SGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA 263
              ++     L+NFW+P  F+  L+   MVPFD F  PWV+FR +   P C++++CAHRA
Sbjct: 121 RSSLE-LEDGLRNFWYPTEFAKKLEPGMMVPFDLFGVPWVLFRDEHSAPTCIKDSCAHRA 179

Query: 264 CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL-RNVKIKSLPCFEQEGMIWIWPGD 322
           CPL LG V  G +QCPYHGWE+   G C KMPST++   V + +LPC E++G +W+WPGD
Sbjct: 180 CPLSLGKVINGHVQCPYHGWEFDGSGACTKMPSTRMCHGVGVAALPCVEKDGFVWVWPGD 239

Query: 323 EPPTATIPCLL-PPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVP 380
            PP    P    PP+G+++HAEI++++P+EHGLL++NLLDLAHAPFTHT+TFA+GW +P
Sbjct: 240 GPPPDLPPDFTAPPAGYDVHAEIMVDVPVEHGLLMENLLDLAHAPFTHTTTFARGWPIP 298

Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a.

Dunaliella salina (taxid: 3046)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 89/167 (53%), Gaps = 16/167 (9%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W+P+  + ++ +D  +    ++   V+++  +G   C ++ C HR   L  G + +GR++
Sbjct: 88  WYPLYLTKNVPEDAPLGLTVYDRQIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGRLE 147

Query: 278 CPYHGWEYSTDGKCEKMP----STQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 332
           C YHGW++  +GKC K+P    S ++ +   +K+    + +G++W+W   + P    P  
Sbjct: 148 CLYHGWQFEGEGKCVKIPQLPASAKIPKAACVKTYEVKDSQGVVWVWMSTKTPPN--PEK 205

Query: 333 LP-------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST 372
           LP       P  F+I      ELP +H +LL+NL+D AH P +H  T
Sbjct: 206 LPWFENFARPGFFDI--STTHELPYDHSILLENLMDPAHVPISHDRT 250

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62.

Arabidopsis thaliana (taxid: 3702)

>sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 13/173 (7%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W+P+  + ++  D  +    +++  V+FR  +    C ++ C HR   L  G + +GR++
Sbjct: 103 WYPLYLTKNVPHDAPLGLKVYDKNIVLFRDGNDQFQCYEDRCPHRLAKLSEGQLIDGRLE 162

Query: 278 CPYHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP--TATIP 330
           C YHGW++  +GKC K+P         ++  +K+    + +G++W+W   + P   + IP
Sbjct: 163 CLYHGWQFEGEGKCVKIPQLPADAKIPKSACVKTYEVRDSQGVLWVWMSRKTPPNVSKIP 222

Query: 331 CL--LPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPR 381
                   GF+       ELP +H +LL+NL+D AH P +H  T    WS  R
Sbjct: 223 WFENFARPGFQ-DISTTHELPYDHSILLENLMDPAHVPISHDRT---DWSAKR 271

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62.

Pisum sativum (taxid: 3888)

>sp|O05616|VANA_PSEUH Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain HR199 / DSM 7063) GN=vanA PE=3 SV=1

 Score = 89.7 bits (221), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG 274
           KN W+ VA + D   D  +      E  V +RG +G    V++ C HR  PL LG V +G
Sbjct: 4   KNAWY-VACTPDEIADKPLGRQICNEKIVFYRGPEGRVAAVEDFCPHRGAPLSLGFVRDG 62

Query: 275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVK-IKSLPCFEQEGMIWIWPGDEPPTATIPCLL 333
           ++ C YHG E   +GK   MP  +++    IKS    E+ G IW+WPGD       P L+
Sbjct: 63  KLICGYHGLEMGCEGKTLAMPGQRVQGFPCIKSYAVEERYGFIWVWPGDR--ELADPALI 120

Query: 334 PPSGFEIHAEI-----VMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375
               +  + E      +  +  ++ L++DNL+DL H  + H S+  +
Sbjct: 121 HHLEWADNPEWAYGGGLYHIACDYRLMIDNLMDLTHETYVHASSIGQ 167

Pseudomonas sp. (strain HR199 / DSM 7063) (taxid: 86003)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

EC: 2

>sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain ATCC 19151) GN=vanA PE=3 SV=1

 Score = 88.6 bits (218), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 8/142 (5%)

Query: 240 EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL 299
           E  VI+RG       +++ C HR  PL LGS+ +G++ C YHG     DG+   MP+ ++
Sbjct: 5   ERMVIYRGAGQRVAALEDFCPHRGAPLSLGSIQDGKLVCGYHGLVMDCDGRTASMPAQRV 64

Query: 300 RNVK-IKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFE-----IHAEIVMELPIEHG 353
           +    I++ P  E+ G IW+WPGD       P L+P   +       +   +  +  ++ 
Sbjct: 65  QAFPCIRAFPAQERHGFIWVWPGDA--ALADPALIPHLEWAENPAWAYGGGLYHIACDYR 122

Query: 354 LLLDNLLDLAHAPFTHTSTFAK 375
           L++DNL+DL H  + H S+  +
Sbjct: 123 LMIDNLMDLTHETYVHASSIGQ 144

Pseudomonas sp. (strain ATCC 19151) (taxid: 315)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

EC: 2

>sp|P94679|TSAM1_COMTE Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1 OS=Comamonas testosteroni GN=tsaM1 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
           ++N W+  A+ T++  + +       EP +++R   G    ++N C HR+ PLH+G    
Sbjct: 3   IRNCWYVAAWDTEIPAEGLFHRTLLNEPVLLYRDTQGRVVALENRCCHRSAPLHIGRQEG 62

Query: 274 GRIQCPYHGWEYSTDGKCEKMPSTQLRNVK--IKSLPCFEQEGMIWIWPGDEPPTATIPC 331
             ++C YHG +++  G C ++P  +    K  IKS P  E+  ++WIW GD  P    P 
Sbjct: 63  DCVRCLYHGLKFNPSGACVEIPGQEQIPPKTCIKSYPVVERNRLVWIWMGD--PARANPD 120

Query: 332 LLPPSGFEIHAEIVMELPIEH-----GLLLDNLLDLAHAPFTHTSTFA 374
            +    +    E  M+    H      L++DNLLD  H  + H +T  
Sbjct: 121 DIVDYFWHDSPEWRMKPGYIHYQANYKLIVDNLLDFTHLAWVHPTTLG 168

Involved in the toluene-4-sulfonate degradation pathway. Does not discriminate between the sulfonate and the carboxyl substituents and can also be involved in the p-toluenecarboxylate degradation pathway. Can use toluene-4-sulfonate, p-toluate, m-toluate and 4-ethylbenzoate as substrates, but not p-xylene, toluene and p-cresol. Catalyzes also the demethylation of 4-methoxybenzoate to 4-hydroxybenzoate.

Comamonas testosteroni (taxid: 285)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 4

EC: .

EC: -

>sp|Q44256|CBAA_COMTE 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas testosteroni GN=cbaA PE=3 SV=1

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 6/130 (4%)

Query: 209 PYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH 267
           P    ++ +W P   ST+L+   + V      E  V FR   G  G + + C HR   L 
Sbjct: 18  PMGGLMREYWIPALKSTELEAGGSPVRLLLLGEKLVAFREPSGAVGVMDSRCPHRGVSLF 77

Query: 268 LGSVNEGRIQCPYHGWEYSTDGKCEKMPST----QLRN-VKIKSLPCFEQEGMIWIWPGD 322
           +G V EG ++C YHGW++S +GKC  MPS     + +N V++   P  E  G++W++ G 
Sbjct: 78  MGRVEEGGLRCVYHGWKFSAEGKCVDMPSVRPEDEFKNSVRVARYPVKEMAGVVWVYMGT 137

Query: 323 EPPTATIPCL 332
                 +P L
Sbjct: 138 RKVLPELPRL 147

Comamonas testosteroni (taxid: 285)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
255545394	535	chlorophyll synthase, putative [Ricinus	0.780	0.732	0.816	0.0
449465447	534	PREDICTED: chlorophyllide a oxygenase, c	0.778	0.732	0.778	1e-180
359492578	537	PREDICTED: chlorophyllide a oxygenase, c	0.780	0.729	0.804	1e-180
338173749	536	chlorophyllide a oxygenase [Camellia sin	0.776	0.727	0.808	1e-179
224082298	531	predicted protein [Populus trichocarpa]	0.780	0.738	0.806	1e-179
356509409	530	PREDICTED: chlorophyllide a oxygenase, c	0.774	0.733	0.801	1e-177
356515896	530	PREDICTED: chlorophyllide a oxygenase, c	0.774	0.733	0.790	1e-174
356552681	534	PREDICTED: chlorophyllide a oxygenase, c	0.770	0.724	0.793	1e-172
356549331	532	PREDICTED: chlorophyllide a oxygenase, c	0.770	0.727	0.785	1e-170
312282087	534	unnamed protein product [Thellungiella h	0.772	0.726	0.744	1e-165

>gi|255545394|ref|XP_002513757.1| chlorophyll synthase, putative [Ricinus communis] gi|223546843|gb|EEF48340.1| chlorophyll synthase, putative [Ricinus communis]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/392 (81%), Positives = 354/392 (90%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           M  +ATAAALSLPISL R +K N+KK VRGGF VFA+FGEEGG++DKKS WSTLFDVEDP
Sbjct: 1   MNTVATAAALSLPISLCRSSKHNSKKGVRGGFGVFAVFGEEGGVLDKKSVWSTLFDVEDP 60

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK+PQ KGKFLDVNQALEVAR+DIQYCDWRARQDVLTIMLLHEKVV+VLNPLARDYKSI
Sbjct: 61  RSKMPQLKGKFLDVNQALEVARFDIQYCDWRARQDVLTIMLLHEKVVDVLNPLARDYKSI 120

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KKELA LQE LAQAH+QVH+SEARV+TALDKLAYMEALVNDRLL DR T+ T  T  
Sbjct: 121 GTVKKELAGLQEALAQAHQQVHLSEARVSTALDKLAYMEALVNDRLLPDRSTTETSHTSP 180

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           S ST+ QSLD V+ + PRKSLNVSGPVQPY++ LKNFW+PVAFSTDLKDDTM+P DCFEE
Sbjct: 181 STSTAPQSLDTVQRRSPRKSLNVSGPVQPYHSHLKNFWYPVAFSTDLKDDTMIPIDCFEE 240

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRGKDG PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY+TDGKCEKMPST+L 
Sbjct: 241 PWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTRLL 300

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKSLPCFEQEGMIW+WPG +PP AT+P L PP+GF +HAEIVMELP+EHGLLLDNLL
Sbjct: 301 NVKIKSLPCFEQEGMIWVWPGSDPPAATLPSLQPPAGFHVHAEIVMELPVEHGLLLDNLL 360

Query: 361 DLAHAPFTHTSTFAKGWSVPRILGPLSNRYGI 392
           DLAHAPFTHTSTFAKGW+VP ++  L+   G+
Sbjct: 361 DLAHAPFTHTSTFAKGWTVPSLVTFLTPASGL 392

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465447|ref|XP_004150439.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Cucumis sativus] gi|449513335|ref|XP_004164299.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Cucumis sativus]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 305/392 (77%), Positives = 349/392 (89%), Gaps = 1/392 (0%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           MT +ATAAALSLPIS  +  ++N KKSV+GGFRVFA+FGEEG  +++KS W TLFDVEDP
Sbjct: 1   MTVVATAAALSLPISFSKSPRLNFKKSVKGGFRVFAVFGEEGA-IERKSGWETLFDVEDP 59

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           R+KVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVL IMLLHEKVVEVLNPLARDYKSI
Sbjct: 60  RTKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLAIMLLHEKVVEVLNPLARDYKSI 119

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GTMKKELA LQ++LA+AHRQVHISEARVATALDKLAYME LV+DRLLQDR+T+  D    
Sbjct: 120 GTMKKELAGLQDELAEAHRQVHISEARVATALDKLAYMEELVHDRLLQDRNTAELDSPST 179

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
            P TS Q LD +    P+KSLNVSGPV+PY+ RLKNFW+PVAFS+DLK+D M+PFDCFEE
Sbjct: 180 LPGTSTQPLDSINRSSPKKSLNVSGPVEPYHPRLKNFWYPVAFSSDLKNDIMIPFDCFEE 239

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWV+FRGKDG PGC++NTCAHRACPLHLGSVN+GR+QCPYHGWEYSTDGKCEKMPST+L 
Sbjct: 240 PWVLFRGKDGNPGCIRNTCAHRACPLHLGSVNDGRVQCPYHGWEYSTDGKCEKMPSTRLL 299

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKSLPCFE+EGMIW+WPG++PP A +P L PP GF+IHAE+V+E+P+EHGLLLDNLL
Sbjct: 300 NVKIKSLPCFEKEGMIWVWPGNDPPAANLPSLKPPPGFQIHAELVIEIPVEHGLLLDNLL 359

Query: 361 DLAHAPFTHTSTFAKGWSVPRILGPLSNRYGI 392
           DLAHAPFTHTSTFAKGWSVP ++  L+   G+
Sbjct: 360 DLAHAPFTHTSTFAKGWSVPSLVKFLTPASGL 391

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492578|ref|XP_002284499.2| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Vitis vinifera] gi|302141810|emb|CBI19013.3| unnamed protein product [Vitis vinifera]

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 317/394 (80%), Positives = 352/394 (89%), Gaps = 2/394 (0%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           MT +ATAAALSLP+SL   +KINTKK  R G RVFA+FG+E G V++KS W T+FDVEDP
Sbjct: 1   MTIVATAAALSLPLSLCPTSKINTKKGERRGLRVFAVFGDESGSVERKSTWGTIFDVEDP 60

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK PQ KGKFLDVNQALEVAR+DIQYCDWRARQD+LTIMLLHEKVVEVLNPLAR+YKSI
Sbjct: 61  RSKFPQSKGKFLDVNQALEVARFDIQYCDWRARQDLLTIMLLHEKVVEVLNPLAREYKSI 120

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KK+LA LQE+LAQAHRQVHISEARV TALDKLAYME LVNDRLLQDR+T+ ++QT  
Sbjct: 121 GTLKKDLAGLQEELAQAHRQVHISEARVGTALDKLAYMEELVNDRLLQDRNTADSNQTST 180

Query: 181 SPSTSKQ--SLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCF 238
           S S S    SLD+VK KLP+KSLNVSGPVQPY+ RLKNFW+PVAFSTDLKDDTM+P DCF
Sbjct: 181 STSPSTSTASLDMVKRKLPQKSLNVSGPVQPYHPRLKNFWYPVAFSTDLKDDTMIPIDCF 240

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298
           EEPWV+FRG+DG PGCV+NTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST+
Sbjct: 241 EEPWVVFRGQDGKPGCVRNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTR 300

Query: 299 LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDN 358
           L NVKIKSLPC EQEGMIWIWPG +PPTAT+P L PP GF+IHAEIVMELP+EHGLLLDN
Sbjct: 301 LLNVKIKSLPCLEQEGMIWIWPGSDPPTATLPSLQPPPGFKIHAEIVMELPVEHGLLLDN 360

Query: 359 LLDLAHAPFTHTSTFAKGWSVPRILGPLSNRYGI 392
           LLDLAHAPFTHTSTFAKGWSVP ++  L+   G+
Sbjct: 361 LLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGL 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338173749|gb|AEI83421.1| chlorophyllide a oxygenase [Camellia sinensis]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 320/396 (80%), Positives = 352/396 (88%), Gaps = 6/396 (1%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           M+AIAT A +SLPISL R +K + K+ VR GF VFA+FGEEGGL DKKSAWSTLFDVEDP
Sbjct: 1   MSAIATVATISLPISLSRSSKFSNKRGVRAGFGVFAVFGEEGGLEDKKSAWSTLFDVEDP 60

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSKVPQCKGKFLDVNQALE+ R+DIQYCDWRARQD+LTIMLLHEKVVEVLNPLARDYKSI
Sbjct: 61  RSKVPQCKGKFLDVNQALELVRFDIQYCDWRARQDLLTIMLLHEKVVEVLNPLARDYKSI 120

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTC- 179
           GT+KK+LAELQ++LAQAH+QVHISEARV+TALDKLAYME LV+DRLLQD+ T+ T+  C 
Sbjct: 121 GTLKKDLAELQDELAQAHKQVHISEARVSTALDKLAYMEELVHDRLLQDKPTT-TESECM 179

Query: 180 -ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCF 238
             S STS +SLD V+ KL RK LNVSGPVQPY+ RLKNFW+PVAFSTDLKDDTMVP DCF
Sbjct: 180 SPSSSTSTESLDTVRNKLSRKILNVSGPVQPYHPRLKNFWYPVAFSTDLKDDTMVPIDCF 239

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298
           EEPWVIFRGKDG PGCVQNTCAHRACPLHLG +NEGRIQCPYHGWEYSTDGKC+KMPST+
Sbjct: 240 EEPWVIFRGKDGKPGCVQNTCAHRACPLHLGPINEGRIQCPYHGWEYSTDGKCKKMPSTR 299

Query: 299 LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDN 358
           L N KIK+LPCFEQEGMIWIWPG++ PTATIP L PP GF+IHAEIVMELP+EHGLLLDN
Sbjct: 300 LVNAKIKALPCFEQEGMIWIWPGNDAPTATIPSLQPPPGFKIHAEIVMELPVEHGLLLDN 359

Query: 359 LLDLAHAPFTHTSTFAKGWSVP---RILGPLSNRYG 391
           LLDLAHAPFTHTSTFAKGWSVP   + L P S   G
Sbjct: 360 LLDLAHAPFTHTSTFAKGWSVPSLAKFLTPASGLQG 395

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082298|ref|XP_002306638.1| predicted protein [Populus trichocarpa] gi|222856087|gb|EEE93634.1| predicted protein [Populus trichocarpa]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 316/392 (80%), Positives = 350/392 (89%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           MTA ATAAALS+PISL R +K+N KK VRGGFRVFA+ GEEGGL+DKKS W  LFDVEDP
Sbjct: 1   MTAFATAAALSVPISLCRSSKLNCKKGVRGGFRVFAVLGEEGGLLDKKSTWGPLFDVEDP 60

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK+PQ KGKFLD  QALEVARYDIQYCDWRARQD+LTIM+LHEKVVEVLNPLARDYKSI
Sbjct: 61  RSKMPQFKGKFLDAYQALEVARYDIQYCDWRARQDLLTIMILHEKVVEVLNPLARDYKSI 120

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GTMKKELAELQ++L+QAHRQVHISEARV+TALDKLAYME LVNDRLLQDR+ + +DQ   
Sbjct: 121 GTMKKELAELQDELSQAHRQVHISEARVSTALDKLAYMEELVNDRLLQDRNPAESDQASP 180

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           SPSTS QSLD VK K PRK+L VSGPVQPY+  LKNFW+PVAFSTDLKD TM+P DCFEE
Sbjct: 181 SPSTSTQSLDTVKNKSPRKNLKVSGPVQPYHPHLKNFWYPVAFSTDLKDGTMIPIDCFEE 240

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWV+FRG DG PGCV+NTCAHRACPLHLGSVNEGR++CPYHGWEYSTDGKCEKMPST+L 
Sbjct: 241 PWVLFRGMDGKPGCVRNTCAHRACPLHLGSVNEGRVRCPYHGWEYSTDGKCEKMPSTRLL 300

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKSLPCFEQEGMI +WPG +PP AT+P L PP GF++HAEIVMELP+EHGLLLDNLL
Sbjct: 301 NVKIKSLPCFEQEGMILVWPGSDPPAATLPSLQPPPGFQVHAEIVMELPVEHGLLLDNLL 360

Query: 361 DLAHAPFTHTSTFAKGWSVPRILGPLSNRYGI 392
           DLAHAPFTHTSTFAKGWSVP ++  L+   G+
Sbjct: 361 DLAHAPFTHTSTFAKGWSVPSLVKFLTPASGL 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509409|ref|XP_003523442.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max]

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 314/392 (80%), Positives = 353/392 (90%), Gaps = 3/392 (0%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           M AIATAA LSLP S  + +K++TKK ++G FRVFA++GEE   +DKK+AWS LFDVEDP
Sbjct: 1   MNAIATAAVLSLPFSFSKSSKLDTKKGLKGRFRVFAVYGEE---IDKKNAWSALFDVEDP 57

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSKVPQ KGKFLDV QALEVARYDIQYCDWRARQD+LTIMLLHEKVVEVLNPLARDYKSI
Sbjct: 58  RSKVPQYKGKFLDVYQALEVARYDIQYCDWRARQDLLTIMLLHEKVVEVLNPLARDYKSI 117

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GTMKKELAELQE+LAQAH+QVHISEARV++ALDKLAYME LVND+LLQ+R T+   QT +
Sbjct: 118 GTMKKELAELQEELAQAHQQVHISEARVSSALDKLAYMEELVNDKLLQERSTTEVSQTSS 177

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           SPSTS + +DI K + PRKSL++SGPVQ Y+  LKNFW+PVAFSTDLKDDTM+P +CFEE
Sbjct: 178 SPSTSFKPVDIEKRRSPRKSLDISGPVQSYHPHLKNFWYPVAFSTDLKDDTMIPIECFEE 237

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRGKDG PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY+TDGKCEKMPST+L 
Sbjct: 238 PWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTRLL 297

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKSLPCFE EGMIW+WPG++PPTAT+P LLPPSGFE+HAEIVMELPIEHGLLLDNLL
Sbjct: 298 NVKIKSLPCFETEGMIWVWPGNDPPTATLPSLLPPSGFEVHAEIVMELPIEHGLLLDNLL 357

Query: 361 DLAHAPFTHTSTFAKGWSVPRILGPLSNRYGI 392
           DLAHAPFTHTSTFAKGWSVP ++  L+   G+
Sbjct: 358 DLAHAPFTHTSTFAKGWSVPSLVKFLTPASGL 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515896|ref|XP_003526633.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max]

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 310/392 (79%), Positives = 349/392 (89%), Gaps = 3/392 (0%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           M AIATAA LSLP S  + +K++TKK ++G FRVFA++GEE   +DKKS WS LFDVEDP
Sbjct: 1   MNAIATAALLSLPFSFSKSSKLDTKKGLKGRFRVFAVYGEE---IDKKSTWSALFDVEDP 57

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSKVPQ KGKFLDV QALE ARYDIQYCDWRARQD+L IMLLHEKVVEVLNPLARDYKSI
Sbjct: 58  RSKVPQYKGKFLDVYQALEFARYDIQYCDWRARQDLLAIMLLHEKVVEVLNPLARDYKSI 117

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GTMKKELA LQE+LA AH+QVHISEARV+TALDKLAYME LVND+LLQ+R T+   QT +
Sbjct: 118 GTMKKELAGLQEELALAHQQVHISEARVSTALDKLAYMEELVNDKLLQERTTTEVSQTSS 177

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           SPSTS + +D+ K + PRKSL++SGPVQ Y+T LKNFW+PVAFSTDLKDDTM+P +CFEE
Sbjct: 178 SPSTSFKPVDVEKRRPPRKSLDISGPVQSYHTHLKNFWYPVAFSTDLKDDTMIPIECFEE 237

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRGKDG PGCVQNTCAHRACPLHLGSV EGRIQCPYHGWEY+TDGKCEKMPST+L 
Sbjct: 238 PWVIFRGKDGKPGCVQNTCAHRACPLHLGSVKEGRIQCPYHGWEYTTDGKCEKMPSTRLL 297

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKSLPCFE+EGMIW+WPG++PPTAT+P LLPPSGFE+HAEIVMELPIEHGLLLDNLL
Sbjct: 298 NVKIKSLPCFEKEGMIWVWPGNDPPTATLPSLLPPSGFEVHAEIVMELPIEHGLLLDNLL 357

Query: 361 DLAHAPFTHTSTFAKGWSVPRILGPLSNRYGI 392
           DLAHAPFTHTSTFAKGWSVP ++  L+   G+
Sbjct: 358 DLAHAPFTHTSTFAKGWSVPSLVKFLTPASGL 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552681|ref|XP_003544691.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 311/392 (79%), Positives = 345/392 (88%), Gaps = 5/392 (1%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           M AIATA+AL+LPI L R  K++TK+ ++G FRVFA+FGEE    +KK+AW+ LFDVEDP
Sbjct: 1   MNAIATASALTLPIFL-RAGKLDTKRDLKGRFRVFAVFGEE----EKKNAWAALFDVEDP 55

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK PQ KGK LD+ QALEVAR+DIQY DWRARQDVLTIM LHEKVVEVLNPLAR+YKSI
Sbjct: 56  RSKFPQNKGKVLDIYQALEVARHDIQYLDWRARQDVLTIMHLHEKVVEVLNPLAREYKSI 115

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KKELA LQ++LAQAHRQVHISEARV TALDKLAYME LVNDRLLQDR T+   QT +
Sbjct: 116 GTLKKELAGLQDELAQAHRQVHISEARVTTALDKLAYMEELVNDRLLQDRSTAEVAQTSS 175

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           SPSTS  SL I K + PRKSLNVSGPVQ Y+  LKNFW+PVAFS DLKDDTM+P +CFEE
Sbjct: 176 SPSTSANSLVIEKRRQPRKSLNVSGPVQSYHPHLKNFWYPVAFSNDLKDDTMIPIECFEE 235

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRGKDG PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY+TDGKCEKMPSTQ  
Sbjct: 236 PWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTQQL 295

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKS+PCFE+EGMIWIWPG++PPTAT+P LLPPSGFEIHAEIVMELPIEHGLLLDNLL
Sbjct: 296 NVKIKSVPCFEREGMIWIWPGNDPPTATLPSLLPPSGFEIHAEIVMELPIEHGLLLDNLL 355

Query: 361 DLAHAPFTHTSTFAKGWSVPRILGPLSNRYGI 392
           DLAHAPFTHTSTFAKGWSVP ++  L+   G+
Sbjct: 356 DLAHAPFTHTSTFAKGWSVPSLVNFLTPASGL 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549331|ref|XP_003543047.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max]

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 308/392 (78%), Positives = 343/392 (87%), Gaps = 5/392 (1%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           M AIATA+ALSLPI L R  K++TK+ ++G FRVFA+FGEE    +KK+AW  LFDVEDP
Sbjct: 1   MNAIATASALSLPIFL-RAGKLDTKRDLKGRFRVFAVFGEE----EKKNAWGALFDVEDP 55

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK PQ KGK LD++QALEVAR+DIQY DWRARQDVLTIM LHEKVVEVLNPLAR+YKSI
Sbjct: 56  RSKFPQNKGKVLDISQALEVARHDIQYLDWRARQDVLTIMHLHEKVVEVLNPLAREYKSI 115

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KKELAELQ++LAQAH QVHISEARV TALDKLAYME LVNDRLLQDR T+   QT +
Sbjct: 116 GTLKKELAELQDELAQAHTQVHISEARVTTALDKLAYMEELVNDRLLQDRSTTDVAQTSS 175

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           SPSTS  SL   K + PRKSLNVSGPVQ Y+  LKNFW+PVAFS DLKDDTM+P +CFEE
Sbjct: 176 SPSTSANSLVTEKRRQPRKSLNVSGPVQSYHPHLKNFWYPVAFSNDLKDDTMIPIECFEE 235

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRGKDG PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY+TDGKCEKMPST+  
Sbjct: 236 PWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTRQL 295

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKS+PCFE+EGMIWIWPG++PP AT+P +LPPSGFEIHAEIVMELPIEHGLLLDNLL
Sbjct: 296 NVKIKSVPCFEKEGMIWIWPGNDPPAATLPSILPPSGFEIHAEIVMELPIEHGLLLDNLL 355

Query: 361 DLAHAPFTHTSTFAKGWSVPRILGPLSNRYGI 392
           DLAHAPFTHTSTFAKGWSVP ++  L+   G+
Sbjct: 356 DLAHAPFTHTSTFAKGWSVPSLVNFLTPASGL 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282087|dbj|BAJ33909.1| unnamed protein product [Thellungiella halophila]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 292/392 (74%), Positives = 337/392 (85%), Gaps = 4/392 (1%)

Query: 3   AIATAAALSLPISL--YRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           A+ T++ALSLPIS    R +K++ KK V+G FRVFA+FGEEGGLV+KKS W  LFDVEDP
Sbjct: 4   AVFTSSALSLPISFCKTRSSKLSRKKGVKGEFRVFAVFGEEGGLVEKKSQWGPLFDVEDP 63

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK P  KGKFLDVNQALEVAR+DIQY DWRARQD+LTIMLLHEKVV+VLNPLAR+YKSI
Sbjct: 64  RSKTPPFKGKFLDVNQALEVARFDIQYLDWRARQDLLTIMLLHEKVVDVLNPLAREYKSI 123

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KKELAELQE+L +AH+QVHISEARV+TALDKLA+ME LVNDRLL  R  + TD+   
Sbjct: 124 GTVKKELAELQEELGKAHQQVHISEARVSTALDKLAHMEKLVNDRLLPVRVATETDK--P 181

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           S STS Q LD  K  +  K+LNVSGPVQPY+ +LKNFW+PVAF+ DLK DTMVP DCFE+
Sbjct: 182 STSTSVQDLDKEKTNVGAKTLNVSGPVQPYSQQLKNFWYPVAFTADLKHDTMVPIDCFEQ 241

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRG+DG PGCV+NTCAHRACPL LG+V EGRIQCPYHGWEYSTDGKC KMPST+L 
Sbjct: 242 PWVIFRGEDGKPGCVRNTCAHRACPLDLGTVKEGRIQCPYHGWEYSTDGKCTKMPSTKLL 301

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKS+PC EQ+GMIW+WPGD+PP+ T+P L PPSGF IHAE+VM+LP+EHGLLLDNLL
Sbjct: 302 NVKIKSIPCLEQDGMIWVWPGDDPPSPTLPSLQPPSGFVIHAELVMDLPVEHGLLLDNLL 361

Query: 361 DLAHAPFTHTSTFAKGWSVPRILGPLSNRYGI 392
           DLAHAPFTHTSTFAKGWSVP ++  L+   G+
Sbjct: 362 DLAHAPFTHTSTFAKGWSVPSLVKFLTPSSGL 393

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
TAIR|locus:2823671	536	CH1 "CHLORINA 1" [Arabidopsis	0.774	0.725	0.695	7.9e-149
TAIR|locus:2047329	539	TIC55-II "translocon at the in	0.302	0.282	0.265	3e-14
UNIPROTKB|Q4KB09	352	vanA "Vanillate O-demethylase,	0.215	0.306	0.345	1e-11
UNIPROTKB|Q48IV9	354	vanA "Vanillate monooxygenase,	0.213	0.302	0.330	1.4e-10
UNIPROTKB|Q4KAM4	363	prnD "Aminopyrrolnitrin oxidas	0.235	0.325	0.296	1.2e-08
FB|FBgn0259697	429	nvd "neverland" [Drosophila me	0.378	0.442	0.283	1.4e-08
UNIPROTKB|D5IGG0	378	carAa "Carbazole 1,9a-dioxygen	0.254	0.338	0.304	3e-08
TAIR|locus:2082122	537	ACD1 "ACCELERATED CELL DEATH 1	0.213	0.199	0.311	5.9e-08
UNIPROTKB|F1NKZ9	409	LOC427775 "Uncharacterized pro	0.245	0.300	0.305	4.7e-07
ZFIN|ZDB-GENE-040718-356	460	zgc:92275 "zgc:92275" [Danio r	0.207	0.226	0.305	1.2e-06

TAIR|locus:2823671 CH1 "CHLORINA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1453 (516.5 bits), Expect = 7.9e-149, P = 7.9e-149
 Identities = 274/394 (69%), Positives = 318/394 (80%)

Query:     3 AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
             A+ + +ALSLPIS    R + ++ KK V+G FRVFA+FG+E GLV+KKS W  LFDVEDP
Sbjct:     4 AVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDP 63

Query:    61 RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
             RSK P  KGKFLDVNQA+EVAR+DIQY DWRARQD+LTIM+LH+KVV+VLNPLAR+YKSI
Sbjct:    64 RSKAPPYKGKFLDVNQAIEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSI 123

Query:   121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
             GT+KKELA LQE+L++AH+QVHISEARV+TALDKLA+ME LVNDRLL  R  +  D+  +
Sbjct:   124 GTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPSS 183

Query:   181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
             S + S   LD  K     KSLNVSGPV PY+  LKNFW+PVAF+ DLK DTMVP +CFE+
Sbjct:   184 STTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQ 243

Query:   241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
             PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQCPYHGWEYSTDG+C+KMPST+L 
Sbjct:   244 PWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLL 303

Query:   301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGXXXXXXX 360
              VKIKSLPC EQEGMIWIWPGDEPP   +P L PPSGF IHAE+VM+LP+EHG       
Sbjct:   304 KVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLL 363

Query:   361 XXAHAPFTHTSTFAKGWSVP---RILGPLSNRYG 391
               AHAPFTHTSTFAKGWSVP   + L P S   G
Sbjct:   364 DLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQG 397

GO:0005506 "iron ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0010277 "chlorophyllide a oxygenase [overall

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;IMP

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2047329 TIC55-II "translocon at the inner envelope membrane of chloroplasts 55-II" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 44/166 (26%), Positives = 78/166 (46%)

Query:   218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
             W+P+  + ++ +D  +    ++   V+++  +G   C ++ C HR   L  G + +GR++
Sbjct:    88 WYPLYLTKNVPEDAPLGLTVYDRQIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGRLE 147

Query:   278 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCF------EQEGMIWIWPGDE-PPTAT-I 329
             C YHGW++  +GKC K+P     + KI    C       + +G++W+W   + PP    +
Sbjct:   148 CLYHGWQFEGEGKCVKIPQLPA-SAKIPKAACVKTYEVKDSQGVVWVWMSTKTPPNPEKL 206

Query:   330 PCL---LPPSGFEIHAEIVMELPIEHGXXXXXXXXXAHAPFTHTST 372
             P       P  F+I      ELP +H          AH P +H  T
Sbjct:   207 PWFENFARPGFFDIST--THELPYDHSILLENLMDPAHVPISHDRT 250

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010277 "chlorophyllide a oxygenase [overall

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0045036 "protein targeting to chloroplast" evidence=IMP

UNIPROTKB|Q4KB09 vanA "Vanillate O-demethylase, oxygenase subunit" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 186 (70.5 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 38/110 (34%), Positives = 54/110 (49%)

Query:   215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG 274
             KN W+      +L+   +    C E   V +R  +G    V++ C HR  PL LG V  G
Sbjct:     4 KNAWYVACTPDELQGKPLGRQICGEH-MVFYRAHEGRVTAVEDFCPHRGAPLSLGYVENG 62

Query:   275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKI-KSLPCFEQEGMIWIWPGDE 323
              + C YHG     DGK  +MP  ++R     K+    E+ G IW+WPGD+
Sbjct:    63 NLVCGYHGLVMGCDGKTVEMPGQRVRGFPCNKTFAAVERYGFIWVWPGDQ 112

GO:0006725 "cellular aromatic compound metabolic process" evidence=ISS

GO:0018489 "vanillate monooxygenase activity" evidence=ISS

UNIPROTKB|Q48IV9 vanA "Vanillate monooxygenase, oxygenase subunit" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 176 (67.0 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 36/109 (33%), Positives = 54/109 (49%)

Query:   215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG 274
             KN W+    + ++ D  +    C  E  V +R ++     +++ C HR  PL LG V  G
Sbjct:     4 KNAWYVACTADEVADKPLGRQIC-NERMVFYRDQNQQVVALEDFCPHRGAPLSLGYVENG 62

Query:   275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKI-KSLPCFEQEGMIWIWPGD 322
             ++ C YHG     DGK   MP  ++R     K+    E+ G IW+WPGD
Sbjct:    63 QLVCGYHGLVMGGDGKTAAMPGQRVRGFPCNKTFAAVERYGFIWVWPGD 111

GO:0018489 "vanillate monooxygenase activity" evidence=ISS

GO:0042190 "vanillin catabolic process" evidence=ISS

UNIPROTKB|Q4KAM4 prnD "Aminopyrrolnitrin oxidase PrnD" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 159 (61.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 38/128 (29%), Positives = 55/128 (42%)

Query:   212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 271
             TR+   W+    S  L+D        F  P+V +R   G    +   C+H    L  G +
Sbjct:    23 TRVAASWYVAMRSNGLRDKPK-ELTLFGRPYVAWRAATGQAVVMDRHCSHLGANLADGRI 81

Query:   272 NEGRIQCPYHGWEYSTDGKCEKMPS-----TQL----RNVKIKSLPCFEQEGMIWIWPGD 322
              +G IQCP+H W Y   GKC  +P       QL    R  +  +L   E+ G +W+W G 
Sbjct:    82 KDGCIQCPFHHWRYDEQGKCVHIPGHSEVVRQLEPVPRAARQPTLVTTERYGYVWVWYGS 141

Query:   323 EPPTATIP 330
               P   +P
Sbjct:   142 PQPLHPLP 149

GO:0003824 "catalytic activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0019748 "secondary metabolic process" evidence=ISS

FB|FBgn0259697 nvd "neverland" [Drosophila melanogaster (taxid:7227)]

 Score = 160 (61.4 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 63/222 (28%), Positives = 92/222 (41%)

Query:   216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEG 274
             N W+ +  S+ LK        C  E  VIFR K  I   +   C H    L +G SV + 
Sbjct:    95 NGWYGILKSSQLKAGEATCVSCLGEDLVIFRSKKDIVFILDAYCPHLGANLGIGGSVADD 154

Query:   275 RIQCPYHGWEY-STDGKCEKMP-STQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC 331
              + CP+H W++  TDG C  +P ST + +  K+K     E +G I+IW   E     +P 
Sbjct:   155 CVICPFHQWKFRGTDGLCINIPYSTSVPKGSKLKKWISQEVDGFIFIWYHAEQ--TELPW 212

Query:   332 LLP-PSG-------FEIHAEIVMELPIEHGXXXXXXXXXAHAPFTHTSTFAKG-WSVPRI 382
              LP P G       +  H E  +   I+           AH    H   F  G W+  + 
Sbjct:   213 DLPVPMGEIDDTFVYHGHNEFYINCHIQE--IPENGADIAHFNAIHKKNFINGSWAQKKR 270

Query:   383 LGPLSNRYGISTTMYGAINHWHLKAWK--TGRTEYQAVRNTS 422
             L      +G+ +      +HW  + W   TG+ +Y A  N S
Sbjct:   271 L------FGLGS------HHWKAR-WSPFTGKLKYLAEVNLS 299

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0007552 "metamorphosis" evidence=IMP

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0002168 "instar larval development" evidence=IMP

GO:0045456 "ecdysteroid biosynthetic process" evidence=IMP

UNIPROTKB|D5IGG0 carAa "Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa" [Sphingomonas sp. (taxid:28214)]

 Score = 156 (60.0 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 43/141 (30%), Positives = 70/141 (49%)

Query:   208 QPY-NTRL--KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 264
             +PY   +L  +N W+PV  ++++ + T VP     E  ++     G    +Q+ C HR  
Sbjct:    16 EPYIRAKLGFRNHWYPVRLASEIAEGTPVPVKLLGEK-ILLNRVGGKVYAIQDRCLHRGV 74

Query:   265 PL--HLGSVNEGRIQCPYHGWEYS-TDGKCEKM---P-STQLRNVKIKSLPCFEQEGMIW 317
              L   +   ++  I C YHGW Y   DG+   +   P S Q+    +K+ P  E +G+I+
Sbjct:    75 TLSDRVECYSKNTISCWYHGWTYRWDDGRLVDILTNPGSVQIGRRALKTFPVEEAKGLIF 134

Query:   318 IWPGDEPPTATIPCLLPPSGF 338
             ++ GD  PT  I  + PP GF
Sbjct:   135 VYVGDGEPTPLIEDV-PP-GF 153

GO:0018564 "carbazole 1,9a-dioxygenase activity" evidence=ISS

GO:0046232 "carbazole catabolic process" evidence=IDA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS

TAIR|locus:2082122 ACD1 "ACCELERATED CELL DEATH 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 38/122 (31%), Positives = 57/122 (46%)

Query:   215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVI-FRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
             ++ W+PV+   DL  +   PF       V+ F   D       + C HR  PL  G ++E
Sbjct:    85 RDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDE 144

Query:   274 -GRIQCPYHGWEYSTDGKCEKMPST-----QLRNVK------IKSLPCFEQEGMIWIWPG 321
              G +QC YHGW +   G C ++P       + R VK      IK  P    +G++++WP 
Sbjct:   145 NGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIK-FPTMVSQGLLFVWP- 202

Query:   322 DE 323
             DE
Sbjct:   203 DE 204

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010277 "chlorophyllide a oxygenase [overall

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=TAS

GO:0032441 "pheophorbide a oxygenase activity" evidence=IDA

GO:0051536 "iron-sulfur cluster binding" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0010154 "fruit development" evidence=IMP

GO:0015996 "chlorophyll catabolic process" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0008219 "cell death" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

UNIPROTKB|F1NKZ9 LOC427775 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 146 (56.5 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 40/131 (30%), Positives = 57/131 (43%)

Query:   193 KGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIP 252
             +G   R+S        PY     N W+ V  S  L    +       E    FR +DG  
Sbjct:    51 RGLSARRSRRPGALPPPY----PNGWYRVLDSAQLPRGAVRSLALLGERLAAFRTQDGQA 106

Query:   253 GCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEY-STDGKCEKMP-STQLRN-VKIKSLP 308
               V   C H    L  G    G  I+CP+HGW +   DGKC  +P + ++ +  K++S P
Sbjct:   107 HVVDAYCPHLGADLAAGGRVVGSCIECPFHGWRFRGEDGKCTHIPYAGKVPDFAKVRSWP 166

Query:   309 CFEQEGMIWIW 319
             C E  GM+ +W
Sbjct:   167 CCEVNGMLLLW 177

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

ZFIN|ZDB-GENE-040718-356 zgc:92275 "zgc:92275" [Danio rerio (taxid:7955)]

 Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 33/108 (30%), Positives = 51/108 (47%)

Query:   216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEG 274
             N W+ V  S  L+   +       +   +FRG+DG    V   C H    L +G  V  G
Sbjct:   121 NGWYRVLDSHMLERGDVKSVTVLGQQVAVFRGQDGKAYVVDAYCPHLGANLAVGGRVVGG 180

Query:   275 RIQCPYHGWEY-STDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIW 319
              I+CP+HGW++   DG+C K+P         K++  P  E  G++ +W
Sbjct:   181 CIECPFHGWQFRGVDGRCVKIPYADKVPEFAKVRCWPSCEINGLVLVW 228

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S7E1	CAO_ORYSJ	1, ., 1, 4, ., 1, 3, ., 1, 2, 2	0.7189	0.7729	0.7171	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.12	0.963
3rd Layer	1.13.12.14	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_V5276	hypothetical protein (531 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_VI0825	SubName- Full=Putative uncharacterized protein; (372 aa)				•		•	•		0.904
	estExt_fgenesh4_pg.C_1070073	protochlorophyllide reductase (EC-1.3.1.33) (399 aa)						•	•		0.903
	eugene3.00110948	protochlorophyllide reductase (EC-1.3.1.33) (399 aa)						•	•		0.903
	estExt_Genewise1_v1.C_LG_XVI3731	chlorophyll synthetase (EC-2.5.1.62) (329 aa)				•		•	•		0.903
	eugene3.00131118	protochlorophyllide reductase (EC-1.3.1.33) (402 aa)						•	•		0.903
	gw1.XVIII.2398.1	hypothetical protein (436 aa)						•			0.899
	gw1.X.5768.1	chlorophyllase (EC-3.1.1.14) (304 aa)						•			0.899
	eugene3.00080117	hypothetical protein (370 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	502
PLN02281	536	PLN02281, PLN02281, chlorophyllide a oxygenase	0.0
cd04337	129	cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a o	3e-84
PLN00095	394	PLN00095, PLN00095, chlorophyllide a oxygenase; Pr	3e-47
cd03469	118	cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron o	2e-31
COG4638	367	COG4638, HcaE, Phenylpropionate dioxygenase and re	7e-29
cd03479	144	cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-hem	3e-28
cd03532	116	cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-hem	4e-26
cd04338	134	cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa L	2e-24
cd03480	138	cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron	2e-18
pfam00355	99	pfam00355, Rieske, Rieske [2Fe-2S] domain	2e-17
cd03467	98	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster	5e-17
cd03548	136	cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-hem	1e-13
cd03537	123	cd03537, Rieske_RO_Alpha_PrnD, This alignment mode	2e-13
PLN02518	539	PLN02518, PLN02518, pheophorbide a oxygenase	3e-12
cd03531	115	cd03531, Rieske_RO_Alpha_KSH, The alignment model	2e-10
cd03478	95	cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing f	3e-08
COG2146	106	COG2146, {NirD}, Ferredoxin subunits of nitrite re	4e-08
cd03542	123	cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iro	2e-07
cd03535	123	cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron	8e-07
cd03541	118	cd03541, Rieske_RO_Alpha_CMO, Rieske non-heme iron	1e-06
cd03528	98	cd03528, Rieske_RO_ferredoxin, Rieske non-heme iro	8e-06
TIGR03229	433	TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenas	2e-05
cd03538	146	cd03538, Rieske_RO_Alpha_AntDO, Rieske non-heme ir	9e-05
cd03472	128	cd03472, Rieske_RO_Alpha_BPDO_like, Rieske non-hem	4e-04
cd03545	150	cd03545, Rieske_RO_Alpha_OHBDO_like, Rieske non-he	5e-04
cd03539	129	cd03539, Rieske_RO_Alpha_S5H, This alignment model	5e-04
TIGR03228	438	TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxyge	7e-04
cd03530	98	cd03530, Rieske_NirD_small_Bacillus, Small subunit	7e-04

>gnl|CDD|177920 PLN02281, PLN02281, chlorophyllide a oxygenase

 Score =  605 bits (1561), Expect = 0.0
 Identities = 281/392 (71%), Positives = 328/392 (83%), Gaps = 2/392 (0%)

Query: 3   AIATAAALSLPISL--YRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           A+ + +ALSLPIS    R + ++ KK V+G FRVFA+FG+E GLV+KKS W  LFDVEDP
Sbjct: 4   AVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDP 63

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK P  KGKFLDVNQA+EVAR+DIQY DWRARQD+LTIM+LH+KVV+VLNPLAR+YKSI
Sbjct: 64  RSKAPPYKGKFLDVNQAIEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSI 123

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KKELA LQE+L++AH+QVHISEARV+TALDKLA+ME LVNDRLL  R  +  D+  +
Sbjct: 124 GTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPSS 183

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           S + S   LD  K     KSLNVSGPV PY+  LKNFW+PVAF+ DLK DTMVP +CFE+
Sbjct: 184 STTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQ 243

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQCPYHGWEYSTDG+C+KMPST+L 
Sbjct: 244 PWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLL 303

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
            VKIKSLPC EQEGMIWIWPGDEPP   +P L PPSGF IHAE+VM+LP+EHGLLLDNLL
Sbjct: 304 KVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLL 363

Query: 361 DLAHAPFTHTSTFAKGWSVPRILGPLSNRYGI 392
           DLAHAPFTHTSTFAKGWSVP ++  L+   G+
Sbjct: 364 DLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGL 395

Length = 536

>gnl|CDD|239829 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b

 Score =  255 bits (654), Expect = 3e-84
 Identities = 81/129 (62%), Positives = 96/129 (74%)

Query: 201 LNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCA 260
             V G        L+NFW+PV FS DLK DTMVPF+ F +PWV+FR +DG PGC+++ CA
Sbjct: 1   SRVLGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECA 60

Query: 261 HRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWP 320
           HRACPL LG V EGRIQCPYHGWEY  DG+C KMPST+  NV I +LPC EQ+GMIW+WP
Sbjct: 61  HRACPLSLGKVIEGRIQCPYHGWEYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWP 120

Query: 321 GDEPPTATI 329
           GD+PP A  
Sbjct: 121 GDDPPAALP 129

CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner chloroplast membrane; Ptc 52, a novel 52 kDa protein isolated from chloroplasts; and LLS1/Pao (Lethal-leaf spot 1/pheophorbide a oxygenase). Length = 129

>gnl|CDD|165668 PLN00095, PLN00095, chlorophyllide a oxygenase; Provisional

 Score =  168 bits (426), Expect = 3e-47
 Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 22/169 (13%)

Query: 215 KNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
           +  WFPVAF+  L+D D ++ FD F  PWV+FR  DG  GC+++ CAHRACPL LG + +
Sbjct: 70  RAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVD 129

Query: 274 GRIQCPYHGWEYSTDGKCEKMPSTQ--LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC 331
           G+ QCPYHGWEY T G+C KMPS +  L+ V   + P  E++G I++W G+  P   +  
Sbjct: 130 GKAQCPYHGWEYETGGECAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGP 189

Query: 332 -------------------LLPPSGFEIHAEIVMELPIEHGLLLDNLLD 361
                                P  GF   AE++ ++ ++   +L+ LL 
Sbjct: 190 EAACESIDDDVLAANEPGMFAPGEGFTPMAEVIADIKLDADEVLERLLA 238

Length = 394

>gnl|CDD|239551 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms

 Score =  116 bits (294), Expect = 2e-31
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGR 275
           W+ V  S++L +    V  +   EP V+ R +DG      N C HR   L  G   N GR
Sbjct: 1   WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGR 60

Query: 276 IQCPYHGWEYSTDGKCEKMPSTQ------LRNVKIKSLPCFEQEGMIWIWPGDEPP 325
           + CPYHGW Y  DGK   +P  +         + ++++P  E  G+I++    + P
Sbjct: 61  LVCPYHGWTYDLDGKLVGVPREEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDAP 116

These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the initial source of two electrons for dioxygen activation. Length = 118

>gnl|CDD|226985 COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]

 Score =  117 bits (294), Expect = 7e-29
 Identities = 55/173 (31%), Positives = 74/173 (42%), Gaps = 17/173 (9%)

Query: 215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NE 273
              W+ VA S++L     +      EP V+ R KDG    + + C HR   L  G V  +
Sbjct: 25  YKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALADVCPHRGARLSEGRVGGK 84

Query: 274 GRIQCPYHGWEYSTDGKCEKMPSTQLR------NVKIKSLPCFEQEGMIWIWPGDEPPTA 327
           GR+ CPYHGW Y  DG+   +P+             +K  P  E+ G IWIW GD PP A
Sbjct: 85  GRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAA 144

Query: 328 TIPCLLPPSGFEIHAEIVM-------ELPIEHGLLLDNLLD-LAHAPFTHTST 372
                LPP+         +        +P    L ++N LD   H PF H   
Sbjct: 145 --EAFLPPAEPYEDDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGL 195

Length = 367

>gnl|CDD|239561 cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA)

 Score =  109 bits (274), Expect = 3e-28
 Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 8/129 (6%)

Query: 205 GPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA 263
           GP  P    L+ +W PVA S++L  D   V      E  V FR   G  G +   C HR 
Sbjct: 9   GPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRG 68

Query: 264 CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP-----STQLRNVKIKSLPCFEQEGMIWI 318
             L  G V E  ++C YHGW++  DG+C +MP     S   + V+  + P  E+ G++W 
Sbjct: 69  ASLVFGRVEECGLRCCYHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWA 128

Query: 319 W--PGDEPP 325
           +  P +E P
Sbjct: 129 YMGPAEEAP 137

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form the 4,5-dihydro-cis-dihydrodiol of phthalate (DHD). CBDO, together with CbaC dehydrogenase, converts the environmental pollutant 3CBA to protocatechuate (PCA) and 5-Cl-PCA, which are then metabolized by the chromosomal PCA meta (extradiol) ring fission pathway. POB-dioxygenase catalyzes the initial catabolic step in the angular dioxygenation of phenoxybenzoate, converting mono- and dichlorinated phenoxybenzoates to protocatechuate and chlorophenols. These phenoxybenzoates are metabolic products formed during the degradation of pyrethroid insecticides. Length = 144

>gnl|CDD|239608 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score =  102 bits (255), Expect = 4e-26
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 3/113 (2%)

Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
            +N W+  A++ +L  D  +      EP V++R +DG    +++ C HR+ PL  GSV  
Sbjct: 2   PRNAWYVAAWADEL-GDKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEG 60

Query: 274 GRIQCPYHGWEYSTDGKCEKMP--STQLRNVKIKSLPCFEQEGMIWIWPGDEP 324
           G + C YHG E+ +DG+C  MP          ++S P  E++ +IWIW GD  
Sbjct: 61  GGLVCGYHGLEFDSDGRCVHMPGQERVPAKACVRSYPVVERDALIWIWMGDAA 113

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degradation pathway of lignin-derived compounds such as ferulic acid and vanillin by soil microbes. DDmC is the oxygenase component of a three-component dicamba O-demethylase found in Pseudomonas maltophila, that catalyzes the conversion of a widely used herbicide called herbicide dicamba (2-methoxy-3,6-dichlorobenzoic acid) to DCSA (3,6-dichlorosalicylic acid). Length = 116

>gnl|CDD|239830 cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane

 Score = 98.4 bits (245), Expect = 2e-24
 Identities = 39/126 (30%), Positives = 71/126 (56%), Gaps = 11/126 (8%)

Query: 207 VQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL 266
           V  Y+ R +  W+P+    D+  D  +    ++EP+V+FR ++G   C+++ C HR   L
Sbjct: 9   VAEYDWREE--WYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKL 66

Query: 267 HLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIW 319
             G + +G+++C YHGW++  +GKC K+P  QL       +N  +KS    + +G++W+W
Sbjct: 67  SEGQLIDGKLECLYHGWQFGGEGKCVKIP--QLPADAKIPKNACVKSYEVRDSQGVVWMW 124

Query: 320 PGDEPP 325
             +  P
Sbjct: 125 MSEATP 130

This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Length = 134

>gnl|CDD|239562 cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1)

 Score = 81.2 bits (201), Expect = 2e-18
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 9/116 (7%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVI-FRGKDGIPGCVQNTCAHRACPLHLGSVNE-GR 275
           W+PVA+  DL      PF       VI +           + C HR  PL  G ++E G 
Sbjct: 18  WYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGC 77

Query: 276 IQCPYHGWEYSTDGKCEKMP--STQLRNVK-----IKSLPCFEQEGMIWIWPGDEP 324
           ++CPYHGW +   G C+++P  +   +        + SLP   ++G++++WPG+  
Sbjct: 78  LECPYHGWSFDGSGSCQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPE 133

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The Arabidopsis-accelerated cell death gene ACD1 is involved in oxygenation of PaO. Length = 138

>gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 218 WFPVAFSTDLKDDT-MVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NE 273
           W PV   ++L +       D   E+P V+ R KDG    + N C HR  PL  G V   +
Sbjct: 2   WVPVCHESELPEPGDFKTVDLDGEDPVVVRRDKDGEVRALSNVCTHRGAPLSRGGVGNEK 61

Query: 274 GRIQCPYHGWEYS-TDGKCEKMPSTQLRN 301
           G  +CPYHGW +  + GK    P+ +   
Sbjct: 62  GGFECPYHGWRFDLSTGKLVGGPAPRPLK 90

The rieske domain has a [2Fe-2S] centre. Two conserved cysteines that one Fe ion while the other Fe ion is coordinated by two conserved histidines. Length = 99

>gnl|CDD|239550 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes

 Score = 76.0 bits (187), Expect = 5e-17
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W  V   ++L             P V+ R + G    + N C H+ CPL  G   +G I 
Sbjct: 1   WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIV 60

Query: 278 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE--QEGMIWIW 319
           CP HG  +    G+    P+ +        LP +    EG   +W
Sbjct: 61  CPCHGSRFDLRTGEVVSGPAPR-------PLPKYPVKVEGDGVVW 98

The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis. Length = 98

>gnl|CDD|239617 cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 16/135 (11%)

Query: 208 QPYNTR---LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 264
           QPY       +N W+P  FS +L++          EP ++ R  DG    +++ C HR  
Sbjct: 2   QPYIDAKWGFRNHWYPALFSHELEEGEPKGIQLCGEP-ILLRRVDGKVYALKDRCLHRGV 60

Query: 265 PL--HLGSVNEGRIQCPYHGWEYS-TDGKCEKM----PSTQLRNVKIKSLPCFEQEGMIW 317
           PL        +G I C YHGW Y   DGK   +        +    +K+ P  E +GMI+
Sbjct: 61  PLSKKPECFTKGTITCWYHGWTYRLDDGKLVTILANPDDPLIGRTGLKTYPVEEAKGMIF 120

Query: 318 IWPGDE-----PPTA 327
           ++ GD      PP A
Sbjct: 121 VFVGDGDYADPPPLA 135

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the reduced pyridine nucleotide to the active site of OMO, where O2 activation and 2-oxoquinoline hydroxylation occurs. CARDO, which contains oxygenase (CARDO-O), ferredoxin (CARDO-F) and ferredoxin reductase (CARDO-R) components, catalyzes the dihydroxylation at the C1 and C9a positions of carbazole. The oxygenase component of OMO and CARDO contain only alpha subunits arranged in a trimeric structure. Length = 136

>gnl|CDD|239611 cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD)

 Score = 66.9 bits (163), Expect = 2e-13
 Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W+    S DLKD        F  P V +RG  G    +   C+H    L  G V +G IQ
Sbjct: 4   WYVAMRSDDLKDKP-TELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQ 62

Query: 278 CPYHGWEYSTDGKCEKMPSTQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 325
           CP+H W Y   G+C  +P             R  +  +L   E+ G +W+W G   P
Sbjct: 63  CPFHHWRYDEQGQCVHIPGHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP 119

PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis. Length = 123

>gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase

 Score = 68.4 bits (167), Expect = 3e-12
 Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 40/184 (21%)

Query: 215 KNFWFPVAFSTDLKDDTMVPF-----------DCFEEPWVIFRGKDGIPGCVQNTCAHRA 263
           ++ W+PV+   DL      PF           D  +  WV F  K          C HR 
Sbjct: 88  RDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDK----------CPHRL 137

Query: 264 CPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPST-----QLRNVK-----IKSLPCFEQ 312
            PL  G ++E G +QC YHGW +   G C ++P       + R VK         P    
Sbjct: 138 APLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVS 197

Query: 313 EGMIWIWP---GDEPPTATIPCLLPPSGFEIHA----EIVMELPIEHGLLLDNLLDLAHA 365
           +G++++WP   G E   AT P +LP   F+        I  +L   +  L++N+ D +H 
Sbjct: 198 QGLLFVWPDENGWERAQATKPPMLPDE-FDDPEFSTVTIQRDLFYGYDTLMENVSDPSHI 256

Query: 366 PFTH 369
            F H
Sbjct: 257 DFAH 260

Length = 539

>gnl|CDD|239607 cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH)

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W  +  + D +D      + F    V+F   DG    +   C H    L  G+V    I 
Sbjct: 2   WHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIA 61

Query: 278 CPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIW---PGDEPPT 326
           CP+H W +  DG+C+ +P  +      + ++ P  E+ G +++W    G+ PP 
Sbjct: 62  CPFHDWRWGGDGRCKAIPYARRVPPLARTRAWPTLERNGQLFVWHDPEGNPPPP 115

The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia. Length = 115

>gnl|CDD|239560 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox)

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 221 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPY 280
           V   +DL D  M   D  +   ++ R    +   +   C H   PL  G + +GRI+CP+
Sbjct: 3   VCRLSDLGDGEMKEVDVGDGKVLLVRQGGEV-HAIGAKCPHYGAPLAKGVLTDGRIRCPW 61

Query: 281 HGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE 311
           HG  ++   G  E  P+       + SLPC+E
Sbjct: 62  HGACFNLRTGDIEDAPA-------LDSLPCYE 86

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner. Length = 95

>gnl|CDD|225057 COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRI 276
           W  +    DL +   V        + +    DG    + N C H   PL  G V  +  +
Sbjct: 5   WIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETV 64

Query: 277 QCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319
            CP HG  +    G+C + P+ +     +K+ P   + G +++ 
Sbjct: 65  VCPLHGARFDLRTGECLEPPAGK----TLKTYPVRVEGGRVFVD 104

Length = 106

>gnl|CDD|239615 cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 240 EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEK 293
           +P VI R KDG      N C+HR   L      N+G   CP+HGW +S  GK  K
Sbjct: 24  QPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLK 78

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol. Length = 123

>gnl|CDD|239609 cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 47.8 bits (114), Expect = 8e-07
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 243 VIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298
           ++ R +DG    + N+C HR    C   +G  N    +CPYHGW Y   G+   +P+ Q
Sbjct: 29  IVCRDEDGEIRAMFNSCRHRGMQVCRAEMG--NTSHFRCPYHGWTYRNTGRLVGVPAQQ 85

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 100 substrates. Included in its varied activities are the enantiospecific cis-dihydroxylation of polycyclic aromatic hydrocarbons and benzocycloalkenes, benzylic hydroxylation, N- and O-dealkylation, sulfoxidation and desaturation reactions. Length = 123

>gnl|CDD|239614 cd03541, Rieske_RO_Alpha_CMO, Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 242 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG---KCEKMPSTQ 298
           +V+ R  +G      N C HRA  L  GS  +    CPYHGW Y  DG   K  +    Q
Sbjct: 27  YVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKATQATGIQ 86

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX). Length = 118

>gnl|CDD|239604 cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO)

 Score = 44.0 bits (105), Expect = 8e-06
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W  V    +L +      D    P  ++R          + C H    L  G V  G I+
Sbjct: 1   WVRVCAVDELPEGEPKRVDVGGRPIAVYRVDGEF-YATDDLCTHGDASLSEGYVEGGVIE 59

Query: 278 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319
           CP HG  +    GK   +P+T      +K+ P   ++G +++ 
Sbjct: 60  CPLHGGRFDLRTGKALSLPAT----EPLKTYPVKVEDGDVYVD 98

The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the insertions that give other Rieske proteins unique structural features are missing. CARDO catalyzes dihydroxylation at the C1 and C9a positions of carbazole. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes. Length = 98

>gnl|CDD|132273 TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenase, large subunit

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 240 EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKM 294
           +P  I R KDG      N C+HR   L      N+    CP+HGW ++  GK  K+
Sbjct: 62  QPIFIARNKDGELNAFINACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKV 117

Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13) [Energy metabolism, Other]. Length = 433

>gnl|CDD|239612 cd03538, Rieske_RO_Alpha_AntDO, Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHL-GSVNEGRI-QCPYHGWEYSTDG 289
           ++P V+ R  DG    + N C H+   +   G  N G+  +CPYH W + TDG
Sbjct: 45  DQPVVMVRHTDGSVHVLYNRCPHKGTKIVSDGCGNTGKFFRCPYHAWSFKTDG 97

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine. Length = 146

>gnl|CDD|239554 cd03472, Rieske_RO_Alpha_BPDO_like, Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO)

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
           E+P ++ R KDG      N C HR    C    G  N     C YHGW Y T G    +P
Sbjct: 31  EDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAG--NAKAFTCTYHGWAYDTAGNLVNVP 88

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is intermediate in size between ethylbenzene and biphenyl. NBDO catalyzes the initial reaction in nitrobenzene degradation, oxidizing the aromatic rings of mono- and dinitrotoluenes to form catechol and nitrite. NBDO belongs to the naphthalene subfamily of ROs. AkbDO is involved in alkylbenzene catabolism, converting o-xylene to 2,3- and 3,4-dimethylphenol and ethylbenzene to cis-dihydrodiol. DFDO is involved in dibenzofuran degradation. Length = 128

>gnl|CDD|239616 cd03545, Rieske_RO_Alpha_OHBDO_like, Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
           + P V+ R +DG      N CAHR    C    G  N+G + C YH W Y   G  + +P
Sbjct: 48  DTPVVVTRAEDGSLHAWVNRCAHRGALVCRERRG--NDGSLTCVYHQWAYDLKGNLKGVP 105

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobenzoates appear to be particularly recalcitrant to biodegradation, several strains utilize 2-CBA and the dCBA derivatives as a sole carbon and energy source. S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits. TERDOS is present in gram-positive bacteria and proteobacteria where it converts terephthalate (1,4-dicarboxybenzene) to protocatechuate as part of the terephthalate degradation pathway. The oxygenase component of TERDOS, called TerZ, is a hetero-hexamer with 3 alpha (TerZalpha) and 3 beta (TerZbeta) subunits. Length = 150

>gnl|CDD|239613 cd03539, Rieske_RO_Alpha_S5H, This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H)

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
           E   ++ R  DG    V+N CAHR    C    G  N     CPYH W YS  G  + +P
Sbjct: 23  ERSVIMTRDPDGGINVVENVCAHRGMRFCRERNG--NAKDFVCPYHQWNYSLKGDLQGVP 80

Query: 296 STQLRNVK 303
               R VK
Sbjct: 81  F--RRGVK 86

S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits. Length = 129

>gnl|CDD|132272 TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxygenase, large subunit

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 240 EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKM 294
           +P ++ R   G    + N C HR   L  +G  N+    CP+H W Y +DG+  K+
Sbjct: 62  QPMIVTRDGKGELHALVNACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKV 117

Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases [Energy metabolism, Amino acids and amines]. Length = 438

>gnl|CDD|239606 cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 244 IFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGW 283
           +FR  D     ++N C H+  PL  G V+   + CP H W
Sbjct: 27  VFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNW 66

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	502
PLN02281	536	chlorophyllide a oxygenase	100.0
TIGR03228	438	anthran_1_2_A anthranilate 1,2-dioxygenase, large	100.0
COG4638	367	HcaE Phenylpropionate dioxygenase and related ring	100.0
TIGR03229	433	benzo_1_2_benA benzoate 1,2-dioxygenase, large sub	100.0
PLN02518	539	pheophorbide a oxygenase	100.0
PLN00095	394	chlorophyllide a oxygenase; Provisional	100.0
cd03479	144	Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxy	99.97
cd04337	129	Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase)	99.97
cd03545	150	Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron ox	99.96
cd03537	123	Rieske_RO_Alpha_PrnD This alignment model represen	99.96
cd04338	134	Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-relate	99.96
cd03531	115	Rieske_RO_Alpha_KSH The alignment model represents	99.95
cd03538	146	Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygena	99.95
cd03532	116	Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxy	99.95
cd03480	138	Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase	99.95
cd03541	118	Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase	99.94
cd03539	129	Rieske_RO_Alpha_S5H This alignment model represent	99.94
cd03548	136	Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxy	99.94
cd03472	128	Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxy	99.94
cd03469	118	Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (	99.93
cd03535	123	Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase	99.93
cd03536	123	Rieske_RO_Alpha_DTDO This alignment model represen	99.93
cd03542	123	Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenas	99.91
cd03528	98	Rieske_RO_ferredoxin Rieske non-heme iron oxygenas	99.91
cd03530	98	Rieske_NirD_small_Bacillus Small subunit of nitrit	99.9
cd03474	108	Rieske_T4moC Toluene-4-monooxygenase effector prot	99.9
TIGR02377	101	MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE	99.88
cd03529	103	Rieske_NirD Assimilatory nitrite reductase (NirD)	99.88
TIGR02378	105	nirD_assim_sml nitrite reductase [NAD(P)H], small	99.88
cd03478	95	Rieske_AIFL_N AIFL (apoptosis-inducing factor like	99.87
PRK09965	106	3-phenylpropionate dioxygenase ferredoxin subunit;	99.87
PF00355	97	Rieske: Rieske [2Fe-2S] domain; InterPro: IPR01794	99.83
PF13806	104	Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A	99.82
cd03467	98	Rieske Rieske domain; a [2Fe-2S] cluster binding d	99.82
PRK09511	108	nirD nitrite reductase small subunit; Provisional	99.81
cd03477	91	Rieske_YhfW_C YhfW family, C-terminal Rieske domai	99.79
COG2146	106	{NirD} Ferredoxin subunits of nitrite reductase an	99.79
cd03476	126	Rieske_ArOX_small Small subunit of Arsenite oxidas	99.72
cd03471	126	Rieske_cytochrome_b6f Iron-sulfur protein (ISP) co	99.68
TIGR02694	129	arsenite_ox_S arsenite oxidase, small subunit. Thi	99.61
cd03470	126	Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) co	99.59
cd03473	107	Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophospha	99.58
PRK13474	178	cytochrome b6-f complex iron-sulfur subunit; Provi	99.45
TIGR01416	174	Rieske_proteo ubiquinol-cytochrome c reductase, ir	99.29
cd03475	171	Rieske_SoxF_SoxL SoxF and SoxL family, Rieske doma	98.97
COG0723	177	QcrA Rieske Fe-S protein [Energy production and co	98.57
cd00680	188	RHO_alpha_C C-terminal catalytic domain of the oxy	98.48
cd08885	190	RHO_alpha_C_1 C-terminal catalytic domain of the o	98.33
cd08878	196	RHO_alpha_C_DMO-like C-terminal catalytic domain o	98.18
TIGR03171	321	soxL2 Rieske iron-sulfur protein SoxL2. This iron-	98.11
cd08886	182	RHO_alpha_C_2 C-terminal catalytic domain of the o	98.1
KOG1671	210	consensus Ubiquinol cytochrome c reductase, subuni	98.09
cd08883	175	RHO_alpha_C_CMO-like C-terminal catalytic domain o	98.05
cd08887	185	RHO_alpha_C_3 C-terminal catalytic domain of the o	97.87
cd08884	205	RHO_alpha_C_GbcA-like C-terminal catalytic domain	97.87
PF00848	209	Ring_hydroxyl_A: Ring hydroxylating alpha subunit	97.37
cd08879	237	RHO_alpha_C_AntDO-like C-terminal catalytic domain	97.3
cd08881	206	RHO_alpha_C_NDO-like C-terminal catalytic domain o	97.16
cd08880	222	RHO_alpha_C_ahdA1c-like C-terminal catalytic domai	96.94
cd08882	243	RHO_alpha_C_MupW-like C-terminal catalytic domain	96.89
PF11723	240	Aromatic_hydrox: Homotrimeric ring hydroxylase; In	94.83
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	94.28
PRK14127	109	cell division protein GpsB; Provisional	86.54

>PLN02281 chlorophyllide a oxygenase

Probab=100.00  E-value=5.8e-116  Score=934.71  Aligned_cols=380  Identities=74%  Similarity=1.245  Sum_probs=355.3

Q ss_pred             Cc-chhcccccccccccc--cccccccccccccceEEEEEecCCCccccccCceeeeeeecCCCCCCCCcCCceeehhhH
Q 010738            1 MT-AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQA   77 (502)
Q Consensus         1 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (502)
                      || +++|+|+||||+||+  ++++|++||||+|||+||||||||+|+++|||.|++||||||||+++|++||||||||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (536)
T PLN02281          1 MNAAVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDPRSKAPPYKGKFLDVNQA   80 (536)
T ss_pred             CCccccchhhhccChhhhcccccccccccccCCceEEEEEEcccccccccccCceEeeeccCCCccCcccccccccHHHH
Confidence            67 499999999999999  889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccceeccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Q 010738           78 LEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY  157 (502)
Q Consensus        78 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~  157 (502)
                      |||+||||||||||||||+||||.||+||||||||||||||||||||||||||||||+|||+|||+||||||++|+||++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (536)
T PLN02281         81 IEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAH  160 (536)
T ss_pred             HHHHHhhhhcccchhhhhHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccccccccccccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCCCCceeEee
Q 010738          158 MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDC  237 (502)
Q Consensus       158 me~l~~~~~l~~~~~a~~~~~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~g~~~~~~l  237 (502)
                      ||+|+|++||+|++.+.++..++.+.+++...+.+.++..+++++.+||++||...+++.||+||.++||++|+++.+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~l  240 (536)
T PLN02281        161 MEELVNDRLLPGRVVTELDKPSSSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIEC  240 (536)
T ss_pred             HHHHhhhhccCCCccccccccccCCcCcchhhhhhhcccccccccccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEEE
Confidence            99999999999998888876666666666888999999999999999999999999999999999999999899999999


Q ss_pred             CCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCcccccccccccceEEeeceEE
Q 010738          238 FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIW  317 (502)
Q Consensus       238 ~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~~G~Iw  317 (502)
                      +|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|..+....++++|||++++|+||
T Consensus       241 lG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlVw  320 (536)
T PLN02281        241 FEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIW  320 (536)
T ss_pred             CCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEEECCEEE
Confidence            99999999999999999999999999999999999999999999999999999999998765567899999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCCCceEeEEEEEEEecccchhccccCCCCCCCcCCcccccCCCCCc
Q 010738          318 IWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVP  380 (502)
Q Consensus       318 V~lg~~~p~~~lpe~~~~~~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~~~~~p  380 (502)
                      ||++++++.+.+|.+..+.++.......+++++||++++||++|.||++|+|+++++..+..+
T Consensus       321 V~lgd~~~aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD~~H~~fvH~~t~g~~~~~p  383 (536)
T PLN02281        321 IWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVP  383 (536)
T ss_pred             EEeCCCCCCCCCccccCcccceEEEEEEEEecCCHHHHHHhccccccccccCcccccCcccCC
Confidence            999876554456666555466555555789999999999999999999999999999865544

>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit

Probab=100.00  E-value=2.2e-37  Score=328.71  Aligned_cols=180  Identities=19%  Similarity=0.311  Sum_probs=155.1

Q ss_pred             ccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEe
Q 010738          178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQ  256 (502)
Q Consensus       178 ~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~  256 (502)
                      .....|||+++|+.|+++||.                 +.|++||+++|||+ |+++++++++++|||+|++||+++||.
T Consensus        16 v~~~~ytd~~if~~E~~~IF~-----------------~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~~   78 (438)
T TIGR03228        16 IARDMFTEPELFDLEMELIFE-----------------KNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHALV   78 (438)
T ss_pred             cChheECCHHHHHHHHHHHHh-----------------hCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEc
Confidence            446689999999999999996                 69999999999997 899999999999999999999999999


Q ss_pred             ecCCCCCCCCCC-CCccceeeeeeecceEEcCCCCcccCCCcc-------cccccccccceEEeeceEEEecCCCCCCCC
Q 010738          257 NTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPTAT  328 (502)
Q Consensus       257 N~CpHRGa~Ls~-G~v~~~~IvCPYHGW~FdldG~cv~vP~~~-------~~~~~L~~~pV~e~~G~IwV~lg~~~p~~~  328 (502)
                      |+|||||++|+. +.++.+.|+||||||+||+||+|+++|...       ....+|++++|.+++|+||++++++++ .+
T Consensus        79 N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~-~~  157 (438)
T TIGR03228        79 NACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAAT-DS  157 (438)
T ss_pred             ccCCCCCCccccCCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCC-CC
Confidence            999999999996 788888999999999999999999998642       124778999999999999999987642 25


Q ss_pred             CCCCCCC-------------C-CceEe-EEEEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738          329 IPCLLPP-------------S-GFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK  375 (502)
Q Consensus       329 lpe~~~~-------------~-~~~v~-~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~  375 (502)
                      +++++++             . ++++. +..++.++||||+++||++|.||++++|.++++.
T Consensus       158 l~e~lg~~~~~ld~~~~~~~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~~  219 (438)
T TIGR03228       158 LEDFLGDARVFLDMMVAQSPTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVAT  219 (438)
T ss_pred             HHHHhhhHHHHHHHHhhccCcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhHhh
Confidence            6665532             1 24433 3457899999999999999999999999987754

Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.

>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]

Probab=100.00  E-value=2.8e-36  Score=312.96  Aligned_cols=184  Identities=29%  Similarity=0.553  Sum_probs=154.7

Q ss_pred             ccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEee
Q 010738          178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQN  257 (502)
Q Consensus       178 ~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N  257 (502)
                      .....++|++.+..+++.+|.                 +.||+||+++||++++++++.++|++++|+|+.||+++|+.|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~-----------------~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~d   67 (367)
T COG4638           5 LPPPFYTDPELFQLELERIFY-----------------KHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALAD   67 (367)
T ss_pred             CCCccccCHHHHHHHHHHhhh-----------------hCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEec
Confidence            344578999999999999996                 599999999999998999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCccc-eeeeeeecceEEcCCCCcccCCC--ccc----ccccccccceEEeeceEEEecCCCCCC-C--
Q 010738          258 TCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPS--TQL----RNVKIKSLPCFEQEGMIWIWPGDEPPT-A--  327 (502)
Q Consensus       258 ~CpHRGa~Ls~G~v~~-~~IvCPYHGW~FdldG~cv~vP~--~~~----~~~~L~~~pV~e~~G~IwV~lg~~~p~-~--  327 (502)
                      .|||||++|+.|.+.+ +.|+||||||+||.+|+|+.+|.  ...    ....+++||+.+++|+||||++++++. .  
T Consensus        68 ~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~~  147 (367)
T COG4638          68 VCPHRGARLSEGRVGGKGRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEAF  147 (367)
T ss_pred             cCCCCCchhccccCCCCceEecCCCceEECCCCcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhHh
Confidence            9999999999999888 89999999999999999999994  221    236799999999999999999987642 1  


Q ss_pred             CCCCCC-CCCCceEe-EEEEEEEecccchhccccCC-CCCCCcCCcccccCCCC
Q 010738          328 TIPCLL-PPSGFEIH-AEIVMELPIEHGLLLDNLLD-LAHAPFTHTSTFAKGWS  378 (502)
Q Consensus       328 ~lpe~~-~~~~~~v~-~~~~~~v~~Nwk~~vEN~lD-~yH~~~vH~~tfg~~~~  378 (502)
                      ..|..+ ..+++... ......+++|||.++||++| +||++++|+++.+....
T Consensus       148 ~~p~~~~~~~~~~~~~~~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~  201 (367)
T COG4638         148 LPPAEPYEDDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPH  201 (367)
T ss_pred             cccccccccccccccCceEEEEecccceEEeeccCCccccccccCHHHhccccc
Confidence            122222 22222222 34567889999999998887 99999999988877544

>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit

Probab=100.00  E-value=8e-36  Score=316.72  Aligned_cols=179  Identities=20%  Similarity=0.260  Sum_probs=151.6

Q ss_pred             ccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEe
Q 010738          178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQ  256 (502)
Q Consensus       178 ~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~  256 (502)
                      .....|||+++|+.|+++||.                 +.|++||+++||++ |+++++.+++++|+|+|++||+++||.
T Consensus        16 ~~~~~Ytd~~~f~~E~~~IF~-----------------~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af~   78 (433)
T TIGR03229        16 CKREMFTDPELFDLEMKHIFE-----------------GNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAFI   78 (433)
T ss_pred             CChhhcCCHHHHHHHHHHHhh-----------------hCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEEe
Confidence            456689999999999999996                 68999999999997 699999999999999999999999999


Q ss_pred             ecCCCCCCCCCCCC-ccceeeeeeecceEEcCCCCcccCCCccc----------ccccccccc-eEEeeceEEEecCCCC
Q 010738          257 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSLP-CFEQEGMIWIWPGDEP  324 (502)
Q Consensus       257 N~CpHRGa~Ls~G~-v~~~~IvCPYHGW~FdldG~cv~vP~~~~----------~~~~L~~~p-V~e~~G~IwV~lg~~~  324 (502)
                      |+|||||++|+.|. ++.+.|+||||||+||.||+|+++|....          ...+|++++ +..+.|+||+++++++
T Consensus        79 N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~~  158 (433)
T TIGR03229        79 NACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPDV  158 (433)
T ss_pred             CcCCCCCCCcccccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCCC
Confidence            99999999999874 56679999999999999999999987321          136799996 5556899999999875


Q ss_pred             CCCCCCCCCCC-------------CCceEe-EEEEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738          325 PTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK  375 (502)
Q Consensus       325 p~~~lpe~~~~-------------~~~~v~-~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~  375 (502)
                      +  +|++++++             .++.+. +..+++++||||+++||++|.||++++|++++..
T Consensus       159 ~--~l~e~Lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~~  221 (433)
T TIGR03229       159 L--PLEEHLGETAKIIDMIVDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYAAT  221 (433)
T ss_pred             C--CHHHHhhhHHHHHHHHhhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHHHh
Confidence            4  56665542             233332 3457889999999999999999999999877654

Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).

>PLN02518 pheophorbide a oxygenase

Probab=100.00  E-value=4.1e-34  Score=310.00  Aligned_cols=166  Identities=24%  Similarity=0.577  Sum_probs=138.8

Q ss_pred             ccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEc-CCCceEEEeecCCCCCCCCCCCCcc-ceeeeeeecceEEcCC
Q 010738          211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTD  288 (502)
Q Consensus       211 ~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~-~dG~v~A~~N~CpHRGa~Ls~G~v~-~~~IvCPYHGW~Fdld  288 (502)
                      .-.+++.||+||.++||++|+++.++++|++|||||+ .+|+++|++|+|||||++|+.|.++ ++.|+||||||+||.+
T Consensus        84 ~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~~  163 (539)
T PLN02518         84 KFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC  163 (539)
T ss_pred             hhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcCC
Confidence            4578999999999999988899999999999999998 8999999999999999999999985 6799999999999999


Q ss_pred             CCcccCCCccc----------ccccccccceEEeeceEEEecCCCC----CCCCCCCCC---CCCCceEeEEEEEEEecc
Q 010738          289 GKCEKMPSTQL----------RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIPCLL---PPSGFEIHAEIVMELPIE  351 (502)
Q Consensus       289 G~cv~vP~~~~----------~~~~L~~~pV~e~~G~IwV~lg~~~----p~~~lpe~~---~~~~~~v~~~~~~~v~~N  351 (502)
                      |+|+.+|....          ...++++|||++++|+||||+++++    +...+|.++   +..++... ....+++++
T Consensus       164 G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~  242 (539)
T PLN02518        164 GSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTV-TIQRDLFYG  242 (539)
T ss_pred             CCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeE-EEEEEEecC
Confidence            99999996421          1346899999999999999998652    122344332   22344332 234688999


Q ss_pred             cchhccccCCCCCCCcCCcccccCCC
Q 010738          352 HGLLLDNLLDLAHAPFTHTSTFAKGW  377 (502)
Q Consensus       352 wk~~vEN~lD~yH~~~vH~~tfg~~~  377 (502)
                      |++++||++|.+|++|+|++++|...
T Consensus       243 ~~~l~EN~lD~sH~pfvH~~~~G~~~  268 (539)
T PLN02518        243 YDTLMENVSDPSHIDFAHHKVTGRRD  268 (539)
T ss_pred             chhHHHhCCccchhceeccccccCcc
Confidence            99999999999999999999998743

>PLN00095 chlorophyllide a oxygenase; Provisional

Probab=100.00  E-value=1.3e-33  Score=291.80  Aligned_cols=163  Identities=42%  Similarity=0.956  Sum_probs=142.3

Q ss_pred             cccccceEEeeecCCC-CCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCC
Q 010738          212 TRLKNFWFPVAFSTDL-KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK  290 (502)
Q Consensus       212 ~~l~~~W~~V~~~seL-~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~  290 (502)
                      ...++.||+||+++|| ++|+++.++++|++|+|+|+.+|+++|+.|.|||||++|+.|.++++.|+||||||+||.+|+
T Consensus        67 ~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G~  146 (394)
T PLN00095         67 ADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGGE  146 (394)
T ss_pred             CchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECCCCC
Confidence            4457999999999999 568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCccc--ccccccccceEEeeceEEEecCCCCCC------------------CCCCC-CCCCCCceEeEEEEEEEe
Q 010738          291 CEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEPPT------------------ATIPC-LLPPSGFEIHAEIVMELP  349 (502)
Q Consensus       291 cv~vP~~~~--~~~~L~~~pV~e~~G~IwV~lg~~~p~------------------~~lpe-~~~~~~~~v~~~~~~~v~  349 (502)
                      |+.+|..+.  .+..+++|||++++|+||||+|+..+.                  ..+|. +.++++|..+.....+++
T Consensus       147 C~~iP~~~~~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~~gf~~~aev~~Dlp  226 (394)
T PLN00095        147 CAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPGEGFTPMAEVIADIK  226 (394)
T ss_pred             EeeCCCccccccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCCCCceEEEEEEEecc
Confidence            999997532  235688999999999999999875443                  12343 444568887777668999


Q ss_pred             cccchhccccCCCCC-CCcCCccccc
Q 010738          350 IEHGLLLDNLLDLAH-APFTHTSTFA  374 (502)
Q Consensus       350 ~Nwk~~vEN~lD~yH-~~~vH~~tfg  374 (502)
                      +.|.+++||.+|.+| .+|+|+.||.
T Consensus       227 ~d~~~L~ENllD~aH~a~~~~t~tf~  252 (394)
T PLN00095        227 LDADEVLERLLAIGERARREATVSFD  252 (394)
T ss_pred             ccHHHHHHhhcCccccCCccCceeee
Confidence            999999999999999 6999999996

>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA)

Probab=99.97  E-value=6e-32  Score=247.96  Aligned_cols=132  Identities=33%  Similarity=0.714  Sum_probs=119.3

Q ss_pred             ccccCCCCCcccccccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeee
Q 010738          201 LNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCP  279 (502)
Q Consensus       201 l~~~gp~~p~~~~l~~~W~~V~~~seL~-~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCP  279 (502)
                      ++++||++|++.++++.|++|+.+++|+ +|+++.+.++|.+++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||
T Consensus         5 ~~~~~~~~~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP   84 (144)
T cd03479           5 LTRVGPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCC   84 (144)
T ss_pred             eeecCCCCchhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEcc
Confidence            5789999999999999999999999999 589999999999999999989999999999999999999999888999999


Q ss_pred             ecceEEcCCCCcccCCCccc-----ccccccccceEEeeceEEEecCCCCCCCCCCCC
Q 010738          280 YHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL  332 (502)
Q Consensus       280 YHGW~FdldG~cv~vP~~~~-----~~~~L~~~pV~e~~G~IwV~lg~~~p~~~lpe~  332 (502)
                      ||||+||.+|+|+.+|..+.     ...+|++|+|++++|+|||++++..+.+++|++
T Consensus        85 ~Hgw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~~~~p~~~~~  142 (144)
T cd03479          85 YHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPAEEAPEFPRY  142 (144)
T ss_pred             CCCcEECCCCCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCCCCCCCCCCC
Confidence            99999999999999997542     245799999999999999999875444455554

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th

>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b

Probab=99.97  E-value=1.1e-30  Score=235.65  Aligned_cols=122  Identities=65%  Similarity=1.383  Sum_probs=113.9

Q ss_pred             cCCCCCcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecce
Q 010738          204 SGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGW  283 (502)
Q Consensus       204 ~gp~~p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW  283 (502)
                      -|+++++..++++.|++|++++||++|+++.++++|++++|+|+.||+++|+.|.|||||++|+.|.++++.|+||||||
T Consensus         4 ~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hgw   83 (129)
T cd04337           4 LGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHGW   83 (129)
T ss_pred             cccCccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCCC
Confidence            47889999999999999999999999999999999999999999899999999999999999999999899999999999


Q ss_pred             EEcCCCCcccCCCcccccccccccceEEeeceEEEecCCCCC
Q 010738          284 EYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  325 (502)
Q Consensus       284 ~FdldG~cv~vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~~p  325 (502)
                      +||.+|+|+.+|..+....+|++|++++++|+|||+++++.|
T Consensus        84 ~Fd~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V~V~~~~~~p  125 (129)
T cd04337          84 EYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWPGDDPP  125 (129)
T ss_pred             EECCCCCEEeCCcCCCccCCcceEeEEEECCEEEEEcCCCCC
Confidence            999999999999765444689999999999999999987644

CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner

>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins

Probab=99.96  E-value=1.7e-29  Score=233.54  Aligned_cols=131  Identities=21%  Similarity=0.370  Sum_probs=116.7

Q ss_pred             cCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEee
Q 010738          179 CASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQN  257 (502)
Q Consensus       179 ~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N  257 (502)
                      +++.|+|++.|+.|++++|++                +.|++||++++|++ |+++++.++|++|+|+|+.+|+++|+.|
T Consensus         3 ~~~~y~d~~~~~~E~~~if~~----------------~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~n   66 (150)
T cd03545           3 PYKVFTDRAYFDREQERIFRG----------------KTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWVN   66 (150)
T ss_pred             ChhhccCHHHHHHHHHhhhCC----------------CceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEcc
Confidence            456899999999999999951                68999999999995 8999999999999999988999999999


Q ss_pred             cCCCCCCCCCCCC-ccceeeeeeecceEEcCCCCcccCCCcc-------------cccccccccceEEeeceEEEecCCC
Q 010738          258 TCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------------LRNVKIKSLPCFEQEGMIWIWPGDE  323 (502)
Q Consensus       258 ~CpHRGa~Ls~G~-v~~~~IvCPYHGW~FdldG~cv~vP~~~-------------~~~~~L~~~pV~e~~G~IwV~lg~~  323 (502)
                      +|||||++|+.|. ++++.|+||||||+||++|+|+++|..+             ....+|++|+|.+++|+|||+++++
T Consensus        67 ~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~~  146 (150)
T cd03545          67 RCAHRGALVCRERRGNDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSDE  146 (150)
T ss_pred             cCcCCCCEecccccCCCCEEECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCCC
Confidence            9999999999874 4577999999999999999999999642             1246899999999999999999876


Q ss_pred             CC
Q 010738          324 PP  325 (502)
Q Consensus       324 ~p  325 (502)
                      ++
T Consensus       147 ~~  148 (150)
T cd03545         147 VE  148 (150)
T ss_pred             CC
Confidence            54

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe

>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD)

Probab=99.96  E-value=4.3e-29  Score=223.88  Aligned_cols=110  Identities=33%  Similarity=0.729  Sum_probs=100.1

Q ss_pred             cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCC
Q 010738          216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP  295 (502)
Q Consensus       216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP  295 (502)
                      +.||+|+.++||+ ++++.++++|++++|+|+.||+++|++|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus         2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP   80 (123)
T cd03537           2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP   80 (123)
T ss_pred             CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECC
Confidence            5799999999996 578899999999999999899999999999999999999999999999999999999999999999


Q ss_pred             Cccc---------ccccccccceEEeeceEEEecCCCCCC
Q 010738          296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPPT  326 (502)
Q Consensus       296 ~~~~---------~~~~L~~~pV~e~~G~IwV~lg~~~p~  326 (502)
                      ..+.         ...++++|||+|++|+||||++++.|.
T Consensus        81 ~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~~  120 (123)
T cd03537          81 GHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQPL  120 (123)
T ss_pred             CCcccccccccCCcccccccEeEEEECCEEEEEcCCCCcc
Confidence            7431         236799999999999999999976553

PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.

>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane

Probab=99.96  E-value=5.1e-29  Score=226.10  Aligned_cols=115  Identities=30%  Similarity=0.839  Sum_probs=104.9

Q ss_pred             ccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCC
Q 010738          211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK  290 (502)
Q Consensus       211 ~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~  290 (502)
                      ...|++.|++|+.++||++|..+.++++|++|+|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+
T Consensus        11 ~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~~G~   90 (134)
T cd04338          11 EYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGGEGK   90 (134)
T ss_pred             ccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECCCCC
Confidence            45788999999999999998888999999999999998999999999999999999999998999999999999999999


Q ss_pred             cccCCCccc-----ccccccccceEEeeceEEEecCCCCC
Q 010738          291 CEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP  325 (502)
Q Consensus       291 cv~vP~~~~-----~~~~L~~~pV~e~~G~IwV~lg~~~p  325 (502)
                      |+.+|....     ...+|++|+|++++|+|||++++.+|
T Consensus        91 ~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~  130 (134)
T cd04338          91 CVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATP  130 (134)
T ss_pred             EEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCC
Confidence            999987531     23569999999999999999987654

This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.

>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH)

Probab=99.95  E-value=9.1e-28  Score=212.35  Aligned_cols=109  Identities=25%  Similarity=0.638  Sum_probs=100.9

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS  296 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~  296 (502)
                      .|++|+.++||++|+++.++++|++++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.+|.
T Consensus         1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~   80 (115)
T cd03531           1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY   80 (115)
T ss_pred             CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence            49999999999999999999999999999998999999999999999999999999999999999999999999999997


Q ss_pred             ccc--ccccccccceEEeeceEEEecCCCCC
Q 010738          297 TQL--RNVKIKSLPCFEQEGMIWIWPGDEPP  325 (502)
Q Consensus       297 ~~~--~~~~L~~~pV~e~~G~IwV~lg~~~p  325 (502)
                      ...  ...++++||+++++|+|||+++++..
T Consensus        81 ~~~~p~~~~l~~ypv~~~~g~v~v~~~~~~~  111 (115)
T cd03531          81 ARRVPPLARTRAWPTLERNGQLFVWHDPEGN  111 (115)
T ss_pred             ccCCCcccccceEeEEEECCEEEEECCCCCC
Confidence            542  23678999999999999999987653

The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.

>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.95  E-value=9.1e-28  Score=221.02  Aligned_cols=127  Identities=20%  Similarity=0.371  Sum_probs=112.4

Q ss_pred             CCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCceEEEeecCC
Q 010738          182 PSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCA  260 (502)
Q Consensus       182 ~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~-~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~Cp  260 (502)
                      .|+|+++++.|++++|.                 +.|++||+.+||+ +|+++++.++|++|+|+|+.+|+++|+.|+||
T Consensus         4 ~y~~~~~~~~e~~~i~~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~Cp   66 (146)
T cd03538           4 VYTDPEIFALEMERLFG-----------------NAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRCP   66 (146)
T ss_pred             eEcCHHHHHHHHHHHhh-----------------cCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccCc
Confidence            58999999999999995                 7899999999999 48999999999999999998999999999999


Q ss_pred             CCCCCCCCC-Ccc-ceeeeeeecceEEcCCCCcccCCCccc----------cccccccc-ceEEeeceEEEecCCCCC
Q 010738          261 HRACPLHLG-SVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSL-PCFEQEGMIWIWPGDEPP  325 (502)
Q Consensus       261 HRGa~Ls~G-~v~-~~~IvCPYHGW~FdldG~cv~vP~~~~----------~~~~L~~~-pV~e~~G~IwV~lg~~~p  325 (502)
                      |||++|+.+ .++ ++.|+||||||+||.||+|+.+|..+.          ...+|+++ .|++++|+|||++++++|
T Consensus        67 Hrg~~L~~~~~g~~~~~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~  144 (146)
T cd03538          67 HKGTKIVSDGCGNTGKFFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP  144 (146)
T ss_pred             CCCCEeecccccccCCEEECCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence            999999754 343 567999999999999999999997541          24689999 689999999999987643

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.

>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.95  E-value=1.2e-27  Score=211.57  Aligned_cols=109  Identities=36%  Similarity=0.826  Sum_probs=101.1

Q ss_pred             cccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCccc
Q 010738          214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK  293 (502)
Q Consensus       214 l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~  293 (502)
                      +++.|++||.++||+ ++++.+.+.|.+++|+|+.+|+++|++|.|||||++|+.|.+.++.|+||||||+||.+|+|+.
T Consensus         2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~   80 (116)
T cd03532           2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVH   80 (116)
T ss_pred             cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEe
Confidence            578999999999999 8899999999999999988999999999999999999999999999999999999999999999


Q ss_pred             CCCcc--cccccccccceEEeeceEEEecCCC
Q 010738          294 MPSTQ--LRNVKIKSLPCFEQEGMIWIWPGDE  323 (502)
Q Consensus       294 vP~~~--~~~~~L~~~pV~e~~G~IwV~lg~~  323 (502)
                      +|...  ....+|++|||++++|+|||+++++
T Consensus        81 ~p~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~  112 (116)
T cd03532          81 MPGQERVPAKACVRSYPVVERDALIWIWMGDA  112 (116)
T ss_pred             CCCCCCCCCccccccCCEEEECCEEEEEcCCc
Confidence            99854  2346799999999999999999865

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad

>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1)

Probab=99.95  E-value=9.1e-28  Score=219.02  Aligned_cols=113  Identities=30%  Similarity=0.797  Sum_probs=101.6

Q ss_pred             ccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcC-CCceEEEeecCCCCCCCCCCCCcc-ceeeeeeecceEEcCCCC
Q 010738          213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGK  290 (502)
Q Consensus       213 ~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~-dG~v~A~~N~CpHRGa~Ls~G~v~-~~~IvCPYHGW~FdldG~  290 (502)
                      .+++.|++|+.++||++|+++.++++|++|+|+|+. ||+++|+.|+|||||++|+.|.+. ++.|+||||||+||.+|+
T Consensus        13 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~   92 (138)
T cd03480          13 DWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGS   92 (138)
T ss_pred             CCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCC
Confidence            457899999999999999999999999999999986 999999999999999999999875 569999999999999999


Q ss_pred             cccCCCccc-------ccccccccceEEeeceEEEecCCCCC
Q 010738          291 CEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPP  325 (502)
Q Consensus       291 cv~vP~~~~-------~~~~L~~~pV~e~~G~IwV~lg~~~p  325 (502)
                      |+.+|....       ...+|++|||++++|+|||+++++++
T Consensus        93 ~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~  134 (138)
T cd03480          93 CQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPEN  134 (138)
T ss_pred             EEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHh
Confidence            999997532       23679999999999999999986543

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The

>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.94  E-value=2.6e-27  Score=210.84  Aligned_cols=107  Identities=25%  Similarity=0.428  Sum_probs=99.3

Q ss_pred             ceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCC
Q 010738          217 FWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP  295 (502)
Q Consensus       217 ~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP  295 (502)
                      .|++||+++||++ |++++++++|++|+|+|+.||+++|+.|+|||||++|+.|.++++.|+||||||+||++|+|+.+|
T Consensus         1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P   80 (118)
T cd03541           1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT   80 (118)
T ss_pred             CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence            4999999999997 689999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             Cccc------ccccccccceEEeeceEEEecCCC
Q 010738          296 STQL------RNVKIKSLPCFEQEGMIWIWPGDE  323 (502)
Q Consensus       296 ~~~~------~~~~L~~~pV~e~~G~IwV~lg~~  323 (502)
                      ....      ...+|++++|.+++|+|||+++++
T Consensus        81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~  114 (118)
T cd03541          81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRS  114 (118)
T ss_pred             CcccccCCCHHHCCCceEeEEEECCEEEEEeCCC
Confidence            8642      347899999999999999999864

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).

>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H)

Probab=99.94  E-value=2.3e-27  Score=214.19  Aligned_cols=108  Identities=22%  Similarity=0.425  Sum_probs=97.1

Q ss_pred             eEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCc-cceeeeeeecceEEcCCCCcccCC
Q 010738          218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP  295 (502)
Q Consensus       218 W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~FdldG~cv~vP  295 (502)
                      |++||+++||++ |+++++.+++.+|+|+|+.||+++||.|+|||||++|+.|.. +.+.|+||||||+||++|+|+.+|
T Consensus         1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p   80 (129)
T cd03539           1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP   80 (129)
T ss_pred             CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence            999999999986 799999999999999999999999999999999999998754 456899999999999999999999


Q ss_pred             Ccc-----------------cccccccccceEEeeceEEEecCCCCC
Q 010738          296 STQ-----------------LRNVKIKSLPCFEQEGMIWIWPGDEPP  325 (502)
Q Consensus       296 ~~~-----------------~~~~~L~~~pV~e~~G~IwV~lg~~~p  325 (502)
                      ...                 ....+|++++|.+++|+|||+++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~  127 (129)
T cd03539          81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE  127 (129)
T ss_pred             ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence            742                 124679999999999999999987654

S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.

>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.94  E-value=5.3e-27  Score=213.23  Aligned_cols=111  Identities=32%  Similarity=0.644  Sum_probs=99.0

Q ss_pred             ccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCC--ccceeeeeeecceEEcC-CC
Q 010738          213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG  289 (502)
Q Consensus       213 ~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~--v~~~~IvCPYHGW~Fdl-dG  289 (502)
                      .|++.|++|++++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.  +.++.|+||||||+||+ +|
T Consensus        10 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG   88 (136)
T cd03548          10 GFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDG   88 (136)
T ss_pred             CcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCc
Confidence            6789999999999999999999999999999999 59999999999999999999885  46789999999999997 89


Q ss_pred             CcccCCCccc----ccccccccceEEeeceEEEecCCCC
Q 010738          290 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP  324 (502)
Q Consensus       290 ~cv~vP~~~~----~~~~L~~~pV~e~~G~IwV~lg~~~  324 (502)
                      +|+.+|..+.    ...+|++|||++++|+|||++++..
T Consensus        89 ~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~~~~~  127 (136)
T cd03548          89 KLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFVGDGD  127 (136)
T ss_pred             cEEEcccCCCccccccCCCceEeEEEECCEEEEEeCCcc
Confidence            9998765332    1357999999999999999998643

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the

>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO)

Probab=99.94  E-value=4.1e-27  Score=212.25  Aligned_cols=115  Identities=23%  Similarity=0.404  Sum_probs=101.1

Q ss_pred             ccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCc-cceeeeeeecceEEcCC
Q 010738          211 NTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTD  288 (502)
Q Consensus       211 ~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~Fdld  288 (502)
                      +.++++.|++||+++||++ |++..+.+++++|+|+|+.||+++|+.|+|||||++|+.|.. +++.|+||||||+||.|
T Consensus         2 ~~i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~   81 (128)
T cd03472           2 ERVFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTA   81 (128)
T ss_pred             cchhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCC
Confidence            4567899999999999987 677788899999999999999999999999999999998864 44689999999999999


Q ss_pred             CCcccCCCccc--------ccccccccceEEeeceEEEecCCCCC
Q 010738          289 GKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP  325 (502)
Q Consensus       289 G~cv~vP~~~~--------~~~~L~~~pV~e~~G~IwV~lg~~~p  325 (502)
                      |+|+++|..+.        ...+|++++|.+++|+|||++++++|
T Consensus        82 G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~  126 (128)
T cd03472          82 GNLVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP  126 (128)
T ss_pred             cCEEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence            99999998532        13569999999999999999988754

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i

>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms

Probab=99.93  E-value=4.9e-26  Score=199.95  Aligned_cols=107  Identities=33%  Similarity=0.669  Sum_probs=98.9

Q ss_pred             eEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCc-cceeeeeeecceEEcCCCCcccCC
Q 010738          218 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP  295 (502)
Q Consensus       218 W~~V~~~seL~-~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~FdldG~cv~vP  295 (502)
                      |++||.++||+ +|+.+.+.+.|++++|+|+.+|+++|+.|.|||||++|+.|.+ +++.|+||||||+||.+|+|+.+|
T Consensus         1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P   80 (118)
T cd03469           1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP   80 (118)
T ss_pred             CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence            99999999999 8999999999999999998899999999999999999999988 789999999999999999999999


Q ss_pred             Cccc------ccccccccceEEeeceEEEecCCCC
Q 010738          296 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP  324 (502)
Q Consensus       296 ~~~~------~~~~L~~~pV~e~~G~IwV~lg~~~  324 (502)
                      ....      ...+|++|+|++++|+|||+++++.
T Consensus        81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~  115 (118)
T cd03469          81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDA  115 (118)
T ss_pred             cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCC
Confidence            8642      2467999999999999999998754

These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i

>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.93  E-value=9.8e-26  Score=201.62  Aligned_cols=110  Identities=21%  Similarity=0.505  Sum_probs=96.1

Q ss_pred             cceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccc-eeeeeeecceEEcCCCCccc
Q 010738          216 NFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEK  293 (502)
Q Consensus       216 ~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~-~~IvCPYHGW~FdldG~cv~  293 (502)
                      +.|++||+++||++ |++..+.+++.+++|+|+.+|+++|+.|+|||||++|+.|..++ +.|+||||||+||.||+|+.
T Consensus         1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~   80 (123)
T cd03535           1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG   80 (123)
T ss_pred             CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence            47999999999988 67878889999999999889999999999999999999987654 68999999999999999999


Q ss_pred             CCCccc--------ccccccccceE-EeeceEEEecCCCCC
Q 010738          294 MPSTQL--------RNVKIKSLPCF-EQEGMIWIWPGDEPP  325 (502)
Q Consensus       294 vP~~~~--------~~~~L~~~pV~-e~~G~IwV~lg~~~p  325 (502)
                      +|....        ...+|+++++. +++|+|||+++++++
T Consensus        81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~~  121 (123)
T cd03535          81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKAP  121 (123)
T ss_pred             CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCCC
Confidence            997432        23689999865 589999999987643

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1

>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO)

Probab=99.93  E-value=1.6e-25  Score=200.33  Aligned_cols=108  Identities=19%  Similarity=0.358  Sum_probs=95.9

Q ss_pred             eEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCcc-ceeeeeeecceEEcCCCCcccCC
Q 010738          218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMP  295 (502)
Q Consensus       218 W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~-~~~IvCPYHGW~FdldG~cv~vP  295 (502)
                      |+.||+++||++ |++..+.+++.+|+|+|+.+|+++|+.|+|||||++|+.|... ...|+||||||+||.+|+|+.+|
T Consensus         1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p   80 (123)
T cd03536           1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP   80 (123)
T ss_pred             CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence            999999999998 6788888999999999988999999999999999999987654 35799999999999999999999


Q ss_pred             Cccc---------ccccccccceEEeeceEEEecCCCCC
Q 010738          296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP  325 (502)
Q Consensus       296 ~~~~---------~~~~L~~~pV~e~~G~IwV~lg~~~p  325 (502)
                      ..+.         ...+|++|+|.+++|+||++++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~  119 (123)
T cd03536          81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGP  119 (123)
T ss_pred             ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCC
Confidence            7532         23779999999999999999987643

DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.

>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.91  E-value=1.5e-24  Score=194.33  Aligned_cols=108  Identities=24%  Similarity=0.468  Sum_probs=94.0

Q ss_pred             eEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCc-cceeeeeeecceEEcCCCCcccCC
Q 010738          218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP  295 (502)
Q Consensus       218 W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~FdldG~cv~vP  295 (502)
                      |+.||+.+||++ |+++.+++.|++|+|+|+.+|+++|+.|.|||||++|+.|.. +++.|+||||||+||.||+|+.+|
T Consensus         1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p   80 (123)
T cd03542           1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK   80 (123)
T ss_pred             CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence            899999999998 688899999999999999899999999999999999998754 456999999999999999999999


Q ss_pred             Cccc----------ccccccccc-eEEeeceEEEecCCCCC
Q 010738          296 STQL----------RNVKIKSLP-CFEQEGMIWIWPGDEPP  325 (502)
Q Consensus       296 ~~~~----------~~~~L~~~p-V~e~~G~IwV~lg~~~p  325 (502)
                      ....          ...+|++++ ++.++|+||+++++++|
T Consensus        81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~  121 (123)
T cd03542          81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVA  121 (123)
T ss_pred             cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCC
Confidence            6421          135788886 55678999999988654

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.

>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO)

Probab=99.91  E-value=3e-24  Score=182.97  Aligned_cols=96  Identities=27%  Similarity=0.530  Sum_probs=90.5

Q ss_pred             eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCCC
Q 010738          218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS  296 (502)
Q Consensus       218 W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP~  296 (502)
                      |++++.++||++|+++.+++.|.+++|+|+ +|+++|+.|+|||+|++|+.|...++.|+||||||+||+ +|+|+..|.
T Consensus         1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~   79 (98)
T cd03528           1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA   79 (98)
T ss_pred             CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence            999999999999999999999999999997 569999999999999999999888899999999999997 999999887


Q ss_pred             cccccccccccceEEeeceEEE
Q 010738          297 TQLRNVKIKSLPCFEQEGMIWI  318 (502)
Q Consensus       297 ~~~~~~~L~~~pV~e~~G~IwV  318 (502)
                      .    .+|++|++++++|.|||
T Consensus        80 ~----~~L~~~~v~~~~g~v~v   97 (98)
T cd03528          80 T----EPLKTYPVKVEDGDVYV   97 (98)
T ss_pred             C----CCcceEeEEEECCEEEE
Confidence            4    47999999999999998

The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in

>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain

Probab=99.90  E-value=9.4e-24  Score=180.48  Aligned_cols=97  Identities=21%  Similarity=0.463  Sum_probs=89.1

Q ss_pred             eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCCC
Q 010738          218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS  296 (502)
Q Consensus       218 W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP~  296 (502)
                      |++|+.++||++|+.+.+.+.|++++|+|+.+|+++|+.|.|||||++|+.|.++++.|+||||||+||+ +|.+.. |.
T Consensus         1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~   79 (98)
T cd03530           1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PD   79 (98)
T ss_pred             CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CC
Confidence            8999999999999889999999999999988899999999999999999999988999999999999997 788764 43


Q ss_pred             cccccccccccceEEeeceEEEe
Q 010738          297 TQLRNVKIKSLPCFEQEGMIWIW  319 (502)
Q Consensus       297 ~~~~~~~L~~~pV~e~~G~IwV~  319 (502)
                          ..+|++||+++++|.|||+
T Consensus        80 ----~~~l~~y~v~v~~g~v~v~   98 (98)
T cd03530          80 ----EGCVRTFPVKVEDGRVYLG   98 (98)
T ss_pred             ----CCccceEeEEEECCEEEEC
Confidence                2469999999999999984

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.

>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.90  E-value=1.7e-23  Score=182.00  Aligned_cols=103  Identities=21%  Similarity=0.374  Sum_probs=92.1

Q ss_pred             eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCCC
Q 010738          218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS  296 (502)
Q Consensus       218 W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP~  296 (502)
                      |++|+.++||++|+++.+.+.|.+++++|..+|+++|+.|+|||||++|+.|..+++.|+||||||+||+ +|.+.. |.
T Consensus         1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~   79 (108)
T cd03474           1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PR   79 (108)
T ss_pred             CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CC
Confidence            8999999999999999999999999999988999999999999999999999888889999999999997 576654 32


Q ss_pred             cccccccccccceEEeeceEEEecCCCCC
Q 010738          297 TQLRNVKIKSLPCFEQEGMIWIWPGDEPP  325 (502)
Q Consensus       297 ~~~~~~~L~~~pV~e~~G~IwV~lg~~~p  325 (502)
                          ..+|++|+|++++|.|||++..+++
T Consensus        80 ----~~~L~~~~v~v~~g~v~v~~~~~~~  104 (108)
T cd03474          80 ----DCRLARYPVKVEGGDILVDTEGVLP  104 (108)
T ss_pred             ----CCccceEeEEEECCEEEEeCCCcCc
Confidence                3579999999999999999875443

T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.

>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily

Probab=99.88  E-value=1.2e-22  Score=175.56  Aligned_cols=99  Identities=21%  Similarity=0.397  Sum_probs=92.3

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP  295 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP  295 (502)
                      .|+.+|..+||++|..+.+.+.|.+++|+|..+|+++|++|.|||+|++|+.|.++++.|+||+|||+||+ ||+|+..|
T Consensus         1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p   80 (101)
T TIGR02377         1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP   80 (101)
T ss_pred             CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence            49999999999999889999999999999977899999999999999999999999999999999999995 99999988


Q ss_pred             CcccccccccccceEEeeceEEEe
Q 010738          296 STQLRNVKIKSLPCFEQEGMIWIW  319 (502)
Q Consensus       296 ~~~~~~~~L~~~pV~e~~G~IwV~  319 (502)
                      ..    .+|++||+++++|.|||.
T Consensus        81 ~~----~~l~~y~v~v~~g~v~V~  100 (101)
T TIGR02377        81 VC----VNLKTYPVKVVDGAVYVD  100 (101)
T ss_pred             cc----CCcceEeEEEECCEEEEe
Confidence            63    369999999999999985

This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].

>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium

Probab=99.88  E-value=1.3e-22  Score=175.52  Aligned_cols=96  Identities=24%  Similarity=0.319  Sum_probs=87.1

Q ss_pred             eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCC-CCCCCcc----ceeeeeeecceEEcC-CCCc
Q 010738          218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYST-DGKC  291 (502)
Q Consensus       218 W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~-Ls~G~v~----~~~IvCPYHGW~Fdl-dG~c  291 (502)
                      |++||.++||++|..+.+.+.|++|+|+|..+|+++|+.|.|||+|++ |+.|.+.    +..|+||||||.||+ +|+|
T Consensus         1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~   80 (103)
T cd03529           1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC   80 (103)
T ss_pred             CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence            899999999999999999999999999998777999999999999997 7777653    348999999999994 9999


Q ss_pred             ccCCCcccccccccccceEEeeceEEE
Q 010738          292 EKMPSTQLRNVKIKSLPCFEQEGMIWI  318 (502)
Q Consensus       292 v~vP~~~~~~~~L~~~pV~e~~G~IwV  318 (502)
                      +..|.     .+|++|||++++|.|||
T Consensus        81 ~~~p~-----~~l~~y~v~~~~g~v~v  102 (103)
T cd03529          81 LEDED-----VSVATFPVRVEDGEVYV  102 (103)
T ss_pred             cCCCC-----ccEeeEeEEEECCEEEE
Confidence            99875     36999999999999998

Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.

>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit

Probab=99.88  E-value=1.2e-22  Score=176.10  Aligned_cols=99  Identities=23%  Similarity=0.412  Sum_probs=89.6

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCC-CCCCCCCCcccee----eeeeecceEEcC-CCC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHR-ACPLHLGSVNEGR----IQCPYHGWEYST-DGK  290 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHR-Ga~Ls~G~v~~~~----IvCPYHGW~Fdl-dG~  290 (502)
                      .|++|+.++||++|..+.+.+.|.+++|+|..+|+++|+.|+|||+ +.+|+.|.+.++.    |+||||||+||+ +|+
T Consensus         1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~   80 (105)
T TIGR02378         1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR   80 (105)
T ss_pred             CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence            5999999999999999999999999999998788999999999999 8999988765554    999999999996 899


Q ss_pred             cccCCCcccccccccccceEEeeceEEEec
Q 010738          291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWP  320 (502)
Q Consensus       291 cv~vP~~~~~~~~L~~~pV~e~~G~IwV~l  320 (502)
                      |+..|.     .+|++||+++++|.|||-+
T Consensus        81 ~~~~~~-----~~L~~y~v~v~~g~v~v~~  105 (105)
T TIGR02378        81 CLEDDS-----GSVRTYEVRVEDGRVYVAL  105 (105)
T ss_pred             ccCCCC-----ccEeeEeEEEECCEEEEeC
Confidence            998764     4799999999999999953

This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.

>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox)

Probab=99.87  E-value=3e-22  Score=170.47  Aligned_cols=92  Identities=26%  Similarity=0.500  Sum_probs=86.5

Q ss_pred             eeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCCCccc
Q 010738          221 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQL  299 (502)
Q Consensus       221 V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP~~~~  299 (502)
                      ||.++||++|+.+.+.++|.+++|+|. +|+++|+.|+|||+|++|+.|.+.++.|+||||||+||+ +|+|+..|..  
T Consensus         3 v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~--   79 (95)
T cd03478           3 VCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPAL--   79 (95)
T ss_pred             eeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCcc--
Confidence            789999999999999999999999997 899999999999999999999888999999999999997 9999999874  


Q ss_pred             ccccccccceEEeeceEE
Q 010738          300 RNVKIKSLPCFEQEGMIW  317 (502)
Q Consensus       300 ~~~~L~~~pV~e~~G~Iw  317 (502)
                        ..|++|++++++|.||
T Consensus        80 --~~l~~~~v~~~~g~i~   95 (95)
T cd03478          80 --DSLPCYEVEVEDGRVY   95 (95)
T ss_pred             --CCcceEEEEEECCEEC
Confidence              3699999999999997

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.

>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional

Probab=99.87  E-value=5e-22  Score=173.02  Aligned_cols=101  Identities=20%  Similarity=0.350  Sum_probs=90.8

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccc-eeeeeeecceEEcC-CCCcccC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYST-DGKCEKM  294 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~-~~IvCPYHGW~Fdl-dG~cv~v  294 (502)
                      .|+.||..+||++|..+.+.+. .+++|+|. +|+++|++|+|||+|++|+.|.+++ +.|+||+|||+||+ +|+|+..
T Consensus         2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~-~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~   79 (106)
T PRK09965          2 NRIYACPVADLPEGEALRVDTS-PVIALFNV-GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCL   79 (106)
T ss_pred             CcEEeeeHHHcCCCCeEEEeCC-CeEEEEEE-CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCC
Confidence            4999999999999988888876 88999995 8999999999999999999998877 78999999999996 8999987


Q ss_pred             CCcccccccccccceEEeeceEEEecCCC
Q 010738          295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (502)
Q Consensus       295 P~~~~~~~~L~~~pV~e~~G~IwV~lg~~  323 (502)
                      |..    .+|++|++++++|.|||.+.++
T Consensus        80 p~~----~~l~~y~v~v~~g~v~v~~~~~  104 (106)
T PRK09965         80 PAT----DPLRTYPVHVEGGDIFIDLPEA  104 (106)
T ss_pred             CCC----CCcceEeEEEECCEEEEEccCC
Confidence            753    5799999999999999987653

>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types

Probab=99.83  E-value=6.9e-21  Score=161.77  Aligned_cols=93  Identities=31%  Similarity=0.661  Sum_probs=79.0

Q ss_pred             ceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCC--ccceeeeeeecceEEcCC-CCcc
Q 010738          217 FWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYSTD-GKCE  292 (502)
Q Consensus       217 ~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~--v~~~~IvCPYHGW~Fdld-G~cv  292 (502)
                      .|++|++++||++ |+...+.+ +...++++..+|+++|+.|+|||+|++|+.|.  .+++.|+||||||+||++ |+|+
T Consensus         1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~   79 (97)
T PF00355_consen    1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECV   79 (97)
T ss_dssp             SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEE
T ss_pred             CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEe
Confidence            5999999999999 78888888 54455555689999999999999999999994  446799999999999986 9999


Q ss_pred             cCCCcccccccccccceEEeec
Q 010738          293 KMPSTQLRNVKIKSLPCFEQEG  314 (502)
Q Consensus       293 ~vP~~~~~~~~L~~~pV~e~~G  314 (502)
                      ..|...    +++.||++++++
T Consensus        80 ~~p~~~----~l~~~~v~ve~~   97 (97)
T PF00355_consen   80 GGPAPR----PLPLYPVKVEGD   97 (97)
T ss_dssp             ESTTCS----BSTEEEEEEETT
T ss_pred             cCCCCC----CcCCCCeEEeCC
Confidence            999853    689999998753

Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....

>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A

Probab=99.82  E-value=2.4e-20  Score=162.74  Aligned_cols=98  Identities=28%  Similarity=0.612  Sum_probs=90.8

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCC-CCCCCCCCCccce----eeeeeecceEEcC-CCC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSVNEG----RIQCPYHGWEYST-DGK  290 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpH-RGa~Ls~G~v~~~----~IvCPYHGW~Fdl-dG~  290 (502)
                      +|..||..+||+++..+.+.+.|.+|+|||..+|+++|++|.||| ++.+|+.|.+++.    .|.||.|+|.||+ +|+
T Consensus         1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~   80 (104)
T PF13806_consen    1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE   80 (104)
T ss_dssp             SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred             CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence            599999999999999999999999999999879999999999999 8999999987765    9999999999997 899


Q ss_pred             cccCCCcccccccccccceEEeeceEEEe
Q 010738          291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIW  319 (502)
Q Consensus       291 cv~vP~~~~~~~~L~~~pV~e~~G~IwV~  319 (502)
                      |+..|.     .++++|||++++|.|||.
T Consensus        81 ~~~~~~-----~~l~~ypvrv~~g~V~V~  104 (104)
T PF13806_consen   81 CLEDPD-----VSLRTYPVRVEDGQVYVE  104 (104)
T ss_dssp             ESSECS-----EBSBEEEEEECTTEEEEE
T ss_pred             cCCCCC-----CcEEeEEEEEECCEEEEC
Confidence            998665     479999999999999984

>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes

Probab=99.82  E-value=4.8e-20  Score=157.26  Aligned_cols=95  Identities=25%  Similarity=0.481  Sum_probs=87.6

Q ss_pred             eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCCC
Q 010738          218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS  296 (502)
Q Consensus       218 W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP~  296 (502)
                      |++++..++|++++.+.+.+.+.+++|+|..+|+++|++|.|||+|++|..+..+++.|+||+|||.||+ ||+|+..|.
T Consensus         1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~   80 (98)
T cd03467           1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA   80 (98)
T ss_pred             CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence            8999999999999999999999999999988899999999999999999998888899999999999998 999999887


Q ss_pred             cccccccccccceEEe-eceE
Q 010738          297 TQLRNVKIKSLPCFEQ-EGMI  316 (502)
Q Consensus       297 ~~~~~~~L~~~pV~e~-~G~I  316 (502)
                          ...|++|++++. ++.|
T Consensus        81 ----~~~l~~~~v~~~~~~~~   97 (98)
T cd03467          81 ----PRPLPKYPVKVEGDGVV   97 (98)
T ss_pred             ----CCCcCEEEEEEeCCceE
Confidence                357999999998 4444

The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.

>PRK09511 nirD nitrite reductase small subunit; Provisional

Probab=99.81  E-value=8.5e-20  Score=160.15  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=87.3

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEc-CCCceEEEeecCCCCCCC-CCCCCccc----eeeeeeecceEEcC-CC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSVNE----GRIQCPYHGWEYST-DG  289 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~-~dG~v~A~~N~CpHRGa~-Ls~G~v~~----~~IvCPYHGW~Fdl-dG  289 (502)
                      .|..||..+||++|..+.+.+.|++|+|+|. .+|+++|++|.|||.|++ |+.|.+.+    ..|+||+|||+||+ +|
T Consensus         3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG   82 (108)
T PRK09511          3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG   82 (108)
T ss_pred             cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence            4999999999999999999999999999994 589999999999999985 99997732    25999999999996 89


Q ss_pred             CcccCCCcccccccccccceEEeeceEEEe
Q 010738          290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIW  319 (502)
Q Consensus       290 ~cv~vP~~~~~~~~L~~~pV~e~~G~IwV~  319 (502)
                      +|+..|.     ..|++|||++++|.|||.
T Consensus        83 ~~~~~~~-----~~l~typV~ve~g~V~v~  107 (108)
T PRK09511         83 LCMEDEQ-----FSVKHYDARVKDGVVQLR  107 (108)
T ss_pred             ccCCCCC-----ccEeeEeEEEECCEEEEe
Confidence            9997664     379999999999999984

>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain

Probab=99.79  E-value=2.5e-19  Score=152.66  Aligned_cols=87  Identities=24%  Similarity=0.387  Sum_probs=78.6

Q ss_pred             eeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCcccc
Q 010738          221 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR  300 (502)
Q Consensus       221 V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~  300 (502)
                      +|..+||++|+.+.+.+.|++++|+|+.+|+++|+.|+|||+|++|+.|.. ++.|+||||||+||.||+|+..|..   
T Consensus         2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa~---   77 (91)
T cd03477           2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPAV---   77 (91)
T ss_pred             ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCCC---
Confidence            578899999999999999999999999899999999999999999998864 5689999999999999999999873   


Q ss_pred             cccccccceEEe
Q 010738          301 NVKIKSLPCFEQ  312 (502)
Q Consensus       301 ~~~L~~~pV~e~  312 (502)
                       ..|++|++...
T Consensus        78 -~~l~~y~v~~~   88 (91)
T cd03477          78 -SGLKPADDAPI   88 (91)
T ss_pred             -CCCCeeEeecc
Confidence             47888988753

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.

>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]

Probab=99.79  E-value=4.1e-19  Score=155.57  Aligned_cols=101  Identities=23%  Similarity=0.432  Sum_probs=89.3

Q ss_pred             cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccce-eeeeeecceEEcC-CCCccc
Q 010738          216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG-RIQCPYHGWEYST-DGKCEK  293 (502)
Q Consensus       216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~-~IvCPYHGW~Fdl-dG~cv~  293 (502)
                      ..|..+|..+||+++..+.+.+.+...++++..+|+++|+.|+|||.|++|+.|.+.+. .|+||.|+|.||+ ||+|+.
T Consensus         3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~   82 (106)
T COG2146           3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE   82 (106)
T ss_pred             CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence            57999999999999888888884425666666899999999999999999999999886 5999999999996 899999


Q ss_pred             CCCcccccccccccceEEeeceEEEec
Q 010738          294 MPSTQLRNVKIKSLPCFEQEGMIWIWP  320 (502)
Q Consensus       294 vP~~~~~~~~L~~~pV~e~~G~IwV~l  320 (502)
                      .|...    .|++||+++.+|.|||.+
T Consensus        83 ~p~~~----~l~~y~vrve~g~v~v~~  105 (106)
T COG2146          83 PPAGK----TLKTYPVRVEGGRVFVDL  105 (106)
T ss_pred             CCCCC----ceeEEeEEEECCEEEEec
Confidence            99753    299999999999999975

>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate

Probab=99.72  E-value=1.6e-17  Score=149.75  Aligned_cols=95  Identities=20%  Similarity=0.319  Sum_probs=85.1

Q ss_pred             EeeecCCCCCCCceeEeeCC--eeEEEEEcC---------CCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-
Q 010738          220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-  287 (502)
Q Consensus       220 ~V~~~seL~~g~~~~~~l~G--~~IVV~R~~---------dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-  287 (502)
                      .||..++|++|+.+.+.+.+  .+++|+|..         +|+++|++|+|||+|++|+.+. +++.|+||+|||+||. 
T Consensus         5 ~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~   83 (126)
T cd03476           5 KVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPA   83 (126)
T ss_pred             EEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCC
Confidence            58999999999999999887  899999964         7999999999999999999977 6789999999999997 


Q ss_pred             -CCCcccCCCcccccccccccceEEe--eceEEEe
Q 010738          288 -DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW  319 (502)
Q Consensus       288 -dG~cv~vP~~~~~~~~L~~~pV~e~--~G~IwV~  319 (502)
                       +|+|+..|.    ...|+.||++++  +|.|||.
T Consensus        84 tgG~~~~gPa----~~~L~~ypv~ve~~~g~V~~~  114 (126)
T cd03476          84 RGGQMVSGQA----TQNLPQIVLEYDEASGDIYAV  114 (126)
T ss_pred             CCCeEEcCCC----CCCCCeEEEEEECCCCEEEEE
Confidence             479998786    357999999999  9999984

It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.

>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.68  E-value=1.8e-16  Score=142.85  Aligned_cols=89  Identities=18%  Similarity=0.369  Sum_probs=71.8

Q ss_pred             CCCceeEe--eCCeeEEEEEcCCCce--EEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCcccccccc
Q 010738          229 DDTMVPFD--CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKI  304 (502)
Q Consensus       229 ~g~~~~~~--l~G~~IVV~R~~dG~v--~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L  304 (502)
                      +|++..+.  ..+..|+|++ .+|++  +|++|+|||+|++|..+.. ++.|+||+|||+||.+|+++..|.    ..+|
T Consensus        22 ~~~~~~~~~~~~~~~Ilv~~-~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa----~~~L   95 (126)
T cd03471          22 PGDRSLVQGLKGDPTYLIVE-EDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPA----PLSL   95 (126)
T ss_pred             CCCeEEEEEecCCeEEEEEe-CCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCC----CCCC
Confidence            46666555  3445555544 68977  7999999999999998754 568999999999999999998886    3579


Q ss_pred             cccceEEeeceEEEecCCC
Q 010738          305 KSLPCFEQEGMIWIWPGDE  323 (502)
Q Consensus       305 ~~~pV~e~~G~IwV~lg~~  323 (502)
                      +.|++++++|.|||.+..+
T Consensus        96 ~~y~V~vedg~I~V~~~~~  114 (126)
T cd03471          96 ALVHATVDDDKVVLSPWTE  114 (126)
T ss_pred             ceEeEEEECCEEEEEECcc
Confidence            9999999999999975543

The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.

>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit

Probab=99.61  E-value=1.7e-15  Score=137.16  Aligned_cols=94  Identities=20%  Similarity=0.348  Sum_probs=81.4

Q ss_pred             EeeecCCCCCCCceeEeeCC--eeEEEEEc---------CCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCC
Q 010738          220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD  288 (502)
Q Consensus       220 ~V~~~seL~~g~~~~~~l~G--~~IVV~R~---------~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdld  288 (502)
                      .||..+||++|.++.+.+.+  .+++++|.         .+|+++|++|.|||.|++|+.+. +++.|.||+|||+||.+
T Consensus         8 ~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~   86 (129)
T TIGR02694         8 RVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPE   86 (129)
T ss_pred             EEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCC
Confidence            58999999999898888765  47888883         58999999999999999999875 67899999999999975


Q ss_pred             --CCcccCCCcccccccccccceEEe-eceEEE
Q 010738          289 --GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI  318 (502)
Q Consensus       289 --G~cv~vP~~~~~~~~L~~~pV~e~-~G~IwV  318 (502)
                        |+++..|.    ..+|++|++++. +|.||.
T Consensus        87 tgG~~~~gP~----~~~L~~y~v~v~~~G~V~~  115 (129)
T TIGR02694        87 KGGQQVWGQA----TQNLPQIVLRVADNGDIFA  115 (129)
T ss_pred             CCCcEECCCC----CCCCCeeEEEEECCCeEEE
Confidence              69998775    357999999997 599994

This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.

>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.59  E-value=6.1e-15  Score=133.06  Aligned_cols=92  Identities=21%  Similarity=0.321  Sum_probs=81.1

Q ss_pred             ecCCCCCCCceeEeeCCeeEEEEEcC----------------------------CCceEEEeecCCCCCCCCCCCCccce
Q 010738          223 FSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------DGIPGCVQNTCAHRACPLHLGSVNEG  274 (502)
Q Consensus       223 ~~seL~~g~~~~~~l~G~~IVV~R~~----------------------------dG~v~A~~N~CpHRGa~Ls~G~v~~~  274 (502)
                      ..++|++|+.+.+.+.|.+|+|+|..                            +|+++|+.+.|||.||.+..+.+.++
T Consensus         5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~~   84 (126)
T cd03470           5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDYG   84 (126)
T ss_pred             EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCCC
Confidence            46889999999999999999999953                            67999999999999999988766778


Q ss_pred             eeeeeecceEEcCCCCcccCCCcccccccccccceEEee-ceEEE
Q 010738          275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIWI  318 (502)
Q Consensus       275 ~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~~-G~IwV  318 (502)
                      .|.||+|||+||++|+.+..|.    +.+|+.||++..+ +.|+|
T Consensus        85 ~~~CPcHgs~Fdl~G~~~~gPa----~~~L~~~p~~~~~~~~l~i  125 (126)
T cd03470          85 GFFCPCHGSHYDASGRIRKGPA----PLNLEVPPYKFLSDTTIVI  125 (126)
T ss_pred             EEEecCcCCEECCCCeEecCCC----CCCCCeeeEEEecCCEEEe
Confidence            9999999999999999998876    4589999999776 67765

The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.

>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.58  E-value=3.2e-15  Score=130.83  Aligned_cols=72  Identities=15%  Similarity=0.335  Sum_probs=65.3

Q ss_pred             cCCCCCCCceeEee-CCeeEEEEEcCCCceEEEeecCCCCCCCCCCC--CccceeeeeeecceEEcC-CCCcccCCC
Q 010738          224 STDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYST-DGKCEKMPS  296 (502)
Q Consensus       224 ~seL~~g~~~~~~l-~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G--~v~~~~IvCPYHGW~Fdl-dG~cv~vP~  296 (502)
                      ..+|++|..+.+.+ .|.+|+|+|. +|+++|++|+|||+|++|+.|  .++++.|+||+|+|+||+ +|+++.-|.
T Consensus        14 l~eL~~G~~~~v~v~~g~~I~V~~~-~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~   89 (107)
T cd03473          14 VANLKEGINFFRNKEDGKKYIIYKS-KSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPD   89 (107)
T ss_pred             HhcCCCCceEEEEecCCcEEEEEEE-CCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCc
Confidence            47899999999999 9999999995 899999999999999999984  578889999999999996 899988665

CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.

>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional

Probab=99.45  E-value=3.6e-13  Score=128.28  Aligned_cols=87  Identities=21%  Similarity=0.442  Sum_probs=72.4

Q ss_pred             CCCCceeEe-eCCee-EEEEEcCCCce--EEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCccccccc
Q 010738          228 KDDTMVPFD-CFEEP-WVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVK  303 (502)
Q Consensus       228 ~~g~~~~~~-l~G~~-IVV~R~~dG~v--~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~  303 (502)
                      ++|+...+. +.|.+ +++++ .+|++  +|+++.|||.||+|..+.. ++.|.||+|||+||.+|+.+..|.    ...
T Consensus        73 ~~g~~~~v~~~~g~~~~lv~~-~~g~~~~~a~~~~CtH~gc~l~~~~~-~~~~~CP~Hgs~Fd~tG~~~~gPa----~~~  146 (178)
T PRK13474         73 PAGDRSLVQGLKGDPTYLVVE-EDGTIASYGINAVCTHLGCVVPWNSG-ENKFQCPCHGSQYDATGKVVRGPA----PLS  146 (178)
T ss_pred             CCCCcEEEEEcCCCeEEEEEe-CCCEEEEEEecCCCCCCCCccccccC-CCEEEecCcCCEECCCCCCccCCC----CCC
Confidence            667777665 66777 55555 58999  5779999999999998864 459999999999999999998886    358


Q ss_pred             ccccceEEeeceEEEec
Q 010738          304 IKSLPCFEQEGMIWIWP  320 (502)
Q Consensus       304 L~~~pV~e~~G~IwV~l  320 (502)
                      |+.|++++++|.|+|.+
T Consensus       147 L~~y~v~v~~g~v~v~~  163 (178)
T PRK13474        147 LALVHVTVEDDKVLFSP  163 (178)
T ss_pred             CCeEeEEEECCEEEEEE
Confidence            99999999999999965

>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit

Probab=99.29  E-value=1.3e-11  Score=117.28  Aligned_cols=93  Identities=20%  Similarity=0.261  Sum_probs=78.0

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcC----------------------------------CCceEEEeecCCCC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------DGIPGCVQNTCAHR  262 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~----------------------------------dG~v~A~~N~CpHR  262 (502)
                      .|..| ..++|++|+.+.+.+.|.+|+|+|..                                  ++++.|+.+.|||.
T Consensus        40 ~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~  118 (174)
T TIGR01416        40 APTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHL  118 (174)
T ss_pred             CcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCC
Confidence            46677 78999999999999999999999851                                  48999999999999


Q ss_pred             CCCCCC-CCcc-ceeeeeeecceEEcCCCCcccCCCcccccccccccceEEeec
Q 010738          263 ACPLHL-GSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEG  314 (502)
Q Consensus       263 Ga~Ls~-G~v~-~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~~G  314 (502)
                      ||.+.+ +... .+.|.||+||++||.+|+.+..|.    +.+|+.||++..++
T Consensus       119 Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa----~~~L~~~~~~~~~~  168 (174)
T TIGR01416       119 GCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPA----PLNLPVPPYKFLSD  168 (174)
T ss_pred             CCccccccCCCCCCEEEeCCCCCEECCCCcEecCCC----CCCCCCCCEEEcCC
Confidence            987754 3333 468999999999999999998877    45899999987654

Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.

>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=98.97  E-value=2e-09  Score=101.89  Aligned_cols=68  Identities=15%  Similarity=0.199  Sum_probs=53.6

Q ss_pred             CCCceEEEeecCCCCCCCCCC---------------CCccceeeeeeecceEEcC-CC-CcccCCCcccccccccccceE
Q 010738          248 KDGIPGCVQNTCAHRACPLHL---------------GSVNEGRIQCPYHGWEYST-DG-KCEKMPSTQLRNVKIKSLPCF  310 (502)
Q Consensus       248 ~dG~v~A~~N~CpHRGa~Ls~---------------G~v~~~~IvCPYHGW~Fdl-dG-~cv~vP~~~~~~~~L~~~pV~  310 (502)
                      .+|+++|+++.|+|+||+|..               |...++.|.||+|||+||. +| ..+..|..    ..|+.|.++
T Consensus        73 p~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~----~pLp~~~L~  148 (171)
T cd03475          73 PNKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAP----RPLPAVILE  148 (171)
T ss_pred             CCCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCC----CCcCEeEEE
Confidence            478999999999999998763               3445789999999999997 45 55555653    578899988


Q ss_pred             Eee--ceEEEe
Q 010738          311 EQE--GMIWIW  319 (502)
Q Consensus       311 e~~--G~IwV~  319 (502)
                      ..+  |.||+-
T Consensus       149 ~d~~~d~iyAv  159 (171)
T cd03475         149 YDSSTDDLYAV  159 (171)
T ss_pred             EeCCCCcEEEE
Confidence            774  788873

SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.

>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]

Probab=98.57  E-value=9.1e-08  Score=90.80  Aligned_cols=76  Identities=25%  Similarity=0.423  Sum_probs=60.3

Q ss_pred             CeeEEEEEcCCCceE-----EEeecCCCCCCCCCC-CCccceeeeeeecceEEcCCCCcccCCCcccccccccccceEEe
Q 010738          239 EEPWVIFRGKDGIPG-----CVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ  312 (502)
Q Consensus       239 G~~IVV~R~~dG~v~-----A~~N~CpHRGa~Ls~-G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~  312 (502)
                      +.+...+++.++.+.     |+...|.|.||.... +....+.|.||+||.+||.+|+.+..|.    +..|+.+++...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA----~~~L~~~~~~~~  158 (177)
T COG0723          83 GPKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPA----PRPLPIPPLEYD  158 (177)
T ss_pred             cccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCC----CCCcCCceEEEe
Confidence            444555555555555     999999999999998 5667899999999999999999988887    457888888777


Q ss_pred             eceEEE
Q 010738          313 EGMIWI  318 (502)
Q Consensus       313 ~G~IwV  318 (502)
                      .+-+++
T Consensus       159 ~d~~~~  164 (177)
T COG0723         159 SDKLYL  164 (177)
T ss_pred             CCceEE
Confidence            664443

>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases

Probab=98.48  E-value=2.1e-07  Score=85.74  Aligned_cols=33  Identities=30%  Similarity=0.482  Sum_probs=29.9

Q ss_pred             EEEEEecccchhccccCCCCCCCcCCcccccCC
Q 010738          344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG  376 (502)
Q Consensus       344 ~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~~  376 (502)
                      ..++++||||+++||++|+||++++|+++++..
T Consensus         3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~   35 (188)
T cd00680           3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATG   35 (188)
T ss_pred             eEEEeccCceEehhhccccccccccChhhhccc
Confidence            357899999999999999999999999998753

C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te

>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases

Probab=98.33  E-value=5.1e-07  Score=85.32  Aligned_cols=32  Identities=19%  Similarity=0.169  Sum_probs=29.3

Q ss_pred             EEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738          344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK  375 (502)
Q Consensus       344 ~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~  375 (502)
                      ..++++||||+++|||+|+||++.+|++|++.
T Consensus         4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~   35 (190)
T cd08885           4 EEEVWDTNWKVLAENFMEGYHLPGLHPGTLHP   35 (190)
T ss_pred             eeeeccCCchhhHhhcCccccccccccchhhc
Confidence            46789999999999999999999999998865

C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and

>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases

Probab=98.18  E-value=2.6e-06  Score=78.99  Aligned_cols=33  Identities=21%  Similarity=0.373  Sum_probs=29.9

Q ss_pred             EEEEecccchhccccCCCCCCCcCCcccccCCC
Q 010738          345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGW  377 (502)
Q Consensus       345 ~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~~~  377 (502)
                      ..+++|||++++||++|.+|++|||.+++|...
T Consensus         5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~   37 (196)
T cd08878           5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDA   37 (196)
T ss_pred             cEEecCCcEEEehhCccccchhhhChhhhCccc
Confidence            357899999999999999999999999998753

C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an

>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2

Probab=98.11  E-value=4.4e-06  Score=85.75  Aligned_cols=69  Identities=14%  Similarity=0.213  Sum_probs=52.5

Q ss_pred             cCCCceEEEeecCCCCCCCCCCC----------------------------Ccc---ceeeeeeecceEEcCC--CCccc
Q 010738          247 GKDGIPGCVQNTCAHRACPLHLG----------------------------SVN---EGRIQCPYHGWEYSTD--GKCEK  293 (502)
Q Consensus       247 ~~dG~v~A~~N~CpHRGa~Ls~G----------------------------~v~---~~~IvCPYHGW~Fdld--G~cv~  293 (502)
                      +.++.|.||+..|+|.||++..-                            ...   .+.|.||+||.+||.+  |+.+.
T Consensus       173 Gp~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~  252 (321)
T TIGR03171       173 GPNKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLT  252 (321)
T ss_pred             CCCCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeC
Confidence            35688999999999999988321                            011   2489999999999973  57888


Q ss_pred             CCCcccccccccccceEEe--eceEEEe
Q 010738          294 MPSTQLRNVKIKSLPCFEQ--EGMIWIW  319 (502)
Q Consensus       294 vP~~~~~~~~L~~~pV~e~--~G~IwV~  319 (502)
                      .|..    ..|..++++..  .|.|++-
T Consensus       253 GPA~----rpLp~i~l~~d~~~~~l~Av  276 (321)
T TIGR03171       253 GPTV----RPLPAVILEWDSSTDYLYAI  276 (321)
T ss_pred             CCCC----CCCCcceEEEeCCCCeEEEE
Confidence            8884    46888888775  4777774

This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.

>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases

Probab=98.10  E-value=7.2e-06  Score=77.91  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=29.4

Q ss_pred             EEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738          344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK  375 (502)
Q Consensus       344 ~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~  375 (502)
                      ..++++||||+++|||+|+||++++|+++++.
T Consensus         4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~   35 (182)
T cd08886           4 LTSEIKANWKNVVDNYLECYHCHTAHPDFVDS   35 (182)
T ss_pred             EEEEeecccEEEEecCCccccCcccChhHHhc
Confidence            46789999999999999999999999998855

C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and

>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]

Probab=98.09  E-value=4.1e-06  Score=80.49  Aligned_cols=75  Identities=27%  Similarity=0.392  Sum_probs=61.4

Q ss_pred             ecCCCCCCCceeEeeCCeeEEEE--------------------------EcCCCceEEEeecCCCCCCCCCCCCccceee
Q 010738          223 FSTDLKDDTMVPFDCFEEPWVIF--------------------------RGKDGIPGCVQNTCAHRACPLHLGSVNEGRI  276 (502)
Q Consensus       223 ~~seL~~g~~~~~~l~G~~IVV~--------------------------R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~I  276 (502)
                      ..++||+|.-.+++..|.|+++-                          |.++-+..++..+|.|.||-.....++.+..
T Consensus        91 ~l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~  170 (210)
T KOG1671|consen   91 KLSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGY  170 (210)
T ss_pred             eeecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccccccCce
Confidence            35677777777788888887773                          3334456899999999999988877778899


Q ss_pred             eeeecceEEcCCCCcccCCCc
Q 010738          277 QCPYHGWEYSTDGKCEKMPST  297 (502)
Q Consensus       277 vCPYHGW~FdldG~cv~vP~~  297 (502)
                      .||+||..||..|+....|+.
T Consensus       171 ~CPCHGSHYdasGRIrkGPAP  191 (210)
T KOG1671|consen  171 YCPCHGSHYDASGRIRKGPAP  191 (210)
T ss_pred             ecccccccccccCceecCCCC
Confidence            999999999999999999874

>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases

Probab=98.05  E-value=8e-06  Score=76.80  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=29.2

Q ss_pred             EEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738          344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK  375 (502)
Q Consensus       344 ~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~  375 (502)
                      ..+++++|||+++|||+|+||++++|+++++.
T Consensus         4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~   35 (175)
T cd08883           4 REYVIECNWKVYVDNYLEGYHVPFAHPGLAAV   35 (175)
T ss_pred             EEeeeecCceEEehhcCCcccCcccchhHHhh
Confidence            45789999999999999999999999998855

C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-

>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases

Probab=97.87  E-value=4.1e-06  Score=78.34  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=29.5

Q ss_pred             EEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738          344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK  375 (502)
Q Consensus       344 ~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~  375 (502)
                      .+++++||||+++||++|+||++++|+++++.
T Consensus         4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~   35 (185)
T cd08887           4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAP   35 (185)
T ss_pred             eeeecCCCceEehhhcccccccchhchhhhcc
Confidence            46789999999999999999999999999865

C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and

>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases

Probab=97.87  E-value=2.2e-05  Score=75.87  Aligned_cols=38  Identities=16%  Similarity=0.237  Sum_probs=32.2

Q ss_pred             CceEeEEEEEEEecccchhccccCCCCCCCcCCccccc
Q 010738          337 GFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA  374 (502)
Q Consensus       337 ~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg  374 (502)
                      .+++.....++++||||+++|||+|+||++++|+++..
T Consensus         7 ~~~~~~~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~   44 (205)
T cd08884           7 NLKVAHRISYEVAANWKLVVENYRECYHCAGVHPELAR   44 (205)
T ss_pred             hcEEccceEEEEccCceehhHhCcccccCccccHHHHh
Confidence            34555566789999999999999999999999998663

C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an

>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []

Probab=97.37  E-value=1.2e-05  Score=74.79  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=27.4

Q ss_pred             EEEEecccchhccccCCCCCCCcCCcccccCC
Q 010738          345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG  376 (502)
Q Consensus       345 ~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~~  376 (502)
                      .++++||||+++||++|.||++++|+++++..
T Consensus        11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~   42 (209)
T PF00848_consen   11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGFF   42 (209)
T ss_dssp             HHHESS-HHHHHHHHHHCTTHHHHTHHHHHHH
T ss_pred             EEEecccceEHHHhCcccccccccccchhhhh
Confidence            35689999999999999999999999987653

The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....

>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases

Probab=97.30  E-value=9e-05  Score=73.47  Aligned_cols=32  Identities=31%  Similarity=0.263  Sum_probs=29.1

Q ss_pred             EEEEEEecccchhccccCCCCCCCcCCccccc
Q 010738          343 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA  374 (502)
Q Consensus       343 ~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg  374 (502)
                      ..++.++||||+++||+.|.||++++|.+++.
T Consensus         3 ~~~~~~~~nWK~~~en~~d~yH~~~~H~~~~~   34 (237)
T cd08879           3 THRYRYRGNWKLQLENGTDGYHPPFVHASYVA   34 (237)
T ss_pred             eeEEEeeceEEEEeeecCccccCccccHHHHH
Confidence            35678999999999999999999999998885

C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are

>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases

Probab=97.16  E-value=0.00013  Score=71.23  Aligned_cols=34  Identities=24%  Similarity=0.230  Sum_probs=30.6

Q ss_pred             EEEEEEecccchhccccC-CCCCCCcCCcccccCC
Q 010738          343 EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAKG  376 (502)
Q Consensus       343 ~~~~~v~~Nwk~~vEN~l-D~yH~~~vH~~tfg~~  376 (502)
                      ..++.++||||+++|||+ |.||++++|.+++..+
T Consensus         8 ~~~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~~   42 (206)
T cd08881           8 PQKWVIKANWKLAAENFAGDGYHTGTTHASALEAG   42 (206)
T ss_pred             cEEEEecCcceehhhccccccccchhhhHHHHHhh
Confidence            467899999999999999 9999999999888554

C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th

>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp

Probab=96.94  E-value=0.0002  Score=70.41  Aligned_cols=33  Identities=27%  Similarity=0.296  Sum_probs=30.0

Q ss_pred             EEEEEEecccchhccccCCCCCCCcCCc--ccccC
Q 010738          343 EIVMELPIEHGLLLDNLLDLAHAPFTHT--STFAK  375 (502)
Q Consensus       343 ~~~~~v~~Nwk~~vEN~lD~yH~~~vH~--~tfg~  375 (502)
                      ..++.+++|||+++||+.|.||++.+|+  .|||.
T Consensus         3 ~~~~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~   37 (222)
T cd08880           3 YYRQRIPGNWKLYAENVKDPYHASLLHLFFVTFGL   37 (222)
T ss_pred             ceeeecCCCcHHHHHhccCcchHHHHhhhheeeec
Confidence            4567899999999999999999999999  88876

strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg

>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases

Probab=96.89  E-value=0.00042  Score=69.14  Aligned_cols=30  Identities=20%  Similarity=0.325  Sum_probs=27.3

Q ss_pred             EEEEEecccchhccccCCCCCCCcCCcccc
Q 010738          344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTF  373 (502)
Q Consensus       344 ~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tf  373 (502)
                      ....++||||.++|||+|.||++++|+...
T Consensus         4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~   33 (243)
T cd08882           4 VTKVLPCNWKVAQEAFNESYHVPTTHPQLL   33 (243)
T ss_pred             EEEEecCCCeeeHHhcCCcccCcccchhHH
Confidence            457899999999999999999999999765

C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l

>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium

Probab=94.83  E-value=0.018  Score=57.39  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=25.9

Q ss_pred             CCceEeEEEEEEEecccchhccccCCCCCCCcCCcccc
Q 010738          336 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF  373 (502)
Q Consensus       336 ~~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tf  373 (502)
                      ++..+.+ ....+.|||.+.+||.+|..|+ |+|..+.
T Consensus        21 ~~~~~~g-~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~   56 (240)
T PF11723_consen   21 DDIVIFG-MHREINANWRLAAENGFDPGHI-FIHKDSI   56 (240)
T ss_dssp             TTEEEEE-EEEEESS-HHHHHHHHT-TTGG-GGGTT-H
T ss_pred             CcceEEe-eeeeccccchhhhhhCcCcceE-EEecCcc
Confidence            3444443 4568999999999999999998 9998553

The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=94.28  E-value=0.022  Score=61.93  Aligned_cols=37  Identities=35%  Similarity=0.818  Sum_probs=33.8

Q ss_pred             CCCCCCCCCCccceeeeeeecceEEcC-CCCcccCCCc
Q 010738          261 HRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPST  297 (502)
Q Consensus       261 HRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP~~  297 (502)
                      |.|+||..|-...+.++||+||..|+. +|....-|..
T Consensus         1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~   38 (478)
T KOG1336|consen    1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGL   38 (478)
T ss_pred             CCCcchhhccccCCcccccccceeecCCcCchhhCcCc
Confidence            899999999888899999999999996 8998888874

>PRK14127 cell division protein GpsB; Provisional

Probab=86.54  E-value=2  Score=38.29  Aligned_cols=42  Identities=31%  Similarity=0.483  Sum_probs=22.0

Q ss_pred             HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010738          105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA  149 (502)
Q Consensus       105 ~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~  149 (502)
                      .|-+-|..+|.+|.   +|-+|++.|++|+++...++--.++|++
T Consensus        27 EVD~FLd~V~~dye---~l~~e~~~Lk~e~~~l~~~l~e~~~~~~   68 (109)
T PRK14127         27 EVDKFLDDVIKDYE---AFQKEIEELQQENARLKAQVDELTKQVS   68 (109)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45666666666653   4444555555555555544444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	502
3gke_A	349	Crystal Structure Of Dicamba Monooxygenase Length =		4e-16
3gkq_A	389	Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr		5e-09
3gcf_A	394	Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr		2e-07
1ww9_A	392	Crystal Structure Of The Terminal Oxygenase Compone		4e-06
3n0q_A	409	Crystal Structure Of A Putative Aromatic-Ring Hydro		4e-06
3vca_A	412	Quaternary Ammonium Oxidative Demethylation: X-Ray		5e-06
2zyl_A	386	Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxyl		1e-05

>pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase Length = 349

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 271
           T ++N W+  A   +L +  +      + P  ++R  DG+   + + C HR  PL  G +
Sbjct: 3   TFVRNAWYVAALPEELSEKPL-GRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGIL 61
Query: 272 NEGRIQCPYHGWEYSTDGKCEKMP---STQLRNVKIKSLPCFEQEGMIWIWPGDEPPTAT 328
             G +QCPYHG E+   G+C   P     +  ++ ++S P  E++ +IWIWPGD  P   
Sbjct: 62  VNGHLQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGD--PALA 119
Query: 329 IPCLLPPSG 337
            P  +P  G
Sbjct: 120 DPGAIPDFG 128

>pdb|3GKQ|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Novosphingobium Sp. Ka1 Length = 389

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL--HLGSV 271
            +N W+PV  S ++ + + VP     E  V+    DG+   + + C HR   L   +   
Sbjct: 28  FRNHWYPVRLSAEVAEASPVPVQLLGEK-VLLNRVDGVVHAIADRCLHRGVTLSDKVECY 86
Query: 272 NEGRIQCPYHGWEYSTD-GKCEKM----PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325
           ++  I C YHGW Y  D GK   +     S Q+    +K+ P  E++G+++++ GD+ P
Sbjct: 87  SKATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP 145

>pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Nocardioides Aromaticivorans Ic177 Length = 394

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 69/171 (40%), Gaps = 21/171 (12%)
Query: 175 TDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVP 234
           T Q  + P+ +  S  +   K PR      G          N W P AF  +L +   V 
Sbjct: 3   TSQEISDPAQATSSAQV---KWPRYLEATLG--------FDNHWHPAAFDHELAEGEFVA 51
Query: 235 FDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYS-TDGKC 291
                E  ++ R K G    + + CAHR  P     +    G + C YHGW Y   DG+ 
Sbjct: 52  VTMLGEKVLLTRAK-GEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDDGRL 110
Query: 292 EKM----PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGF 338
             +     S  +  + IK  P    +G+++++ GDE P A    L  P GF
Sbjct: 111 VDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEPHALSEDL--PPGF 159

>pdb|1WW9|A Chain A, Crystal Structure Of The Terminal Oxygenase Component Of Carbazole 1, 9a-dioxygenase, A Non-heme Iron Oxygenase System Catalyzing The Novel Angular Dioxygenation For Carbazole And Dioxin Length = 392

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--V 271
            +N W+PV FS ++ +          E  ++ R  DG   C+++ C HR   L +     
Sbjct: 25  FRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECK 83
Query: 272 NEGRIQCPYHGWEYS-TDGK-CEKM---PSTQLRNVKIKSLPCFEQEGMIWIW--PGDEP 324
            +  I C YH W Y   DG  C+ +    S Q+   K+K+ P  E +G ++I+   GD P
Sbjct: 84  TKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP 143
Query: 325 PTATIPCLLPPSGFEIHAEIV 345
           P A      PP+  +   EI+
Sbjct: 144 PLARD---TPPNFLDDDMEIL 161

>pdb|3N0Q|A Chain A, Crystal Structure Of A Putative Aromatic-Ring Hydroxylating Dioxygenase (Tm1040_3219) From Silicibacter Sp. Tm1040 At 1 Resolution Length = 409

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 243 VIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKC----EKMP 295
           +I RG D +     N C HR    C    G  N  ++ CPYH W Y  DG+     +  P
Sbjct: 68  IIVRGADNVIRAFHNACRHRGSVICKAKKG--NNPKLVCPYHQWTYELDGRLLWARDXGP 125
Query: 296 STQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325
             +     +K++ C E  G+I+I   DE P
Sbjct: 126 DFEPSRHGLKTVHCRELAGLIYICLADEAP 155

>pdb|3VCA|A Chain A, Quaternary Ammonium Oxidative Demethylation: X-Ray Crystallographic, Resonance Raman And Uv-Visible Spectroscopic Analysis Of A Rieske- Type Demethylase Length = 412

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 243 VIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKC----EKMP 295
           VI R +DG      N+C HR    C    G V   ++ CPYH W Y  DGK     +  P
Sbjct: 70  VIVRSRDGEVRAFHNSCRHRGSLICKARQGQV--AKLVCPYHQWTYELDGKLIWANDMGP 127
Query: 296 STQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIH 341
                   +K +     +G+I+I   D PP       L     E+H
Sbjct: 128 DFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVH 173

>pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase (Ksha) From M. Tuberculosis Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 271
           TR    W  +  + D  +      + F    V+F    G    +   C H    L  G+V
Sbjct: 20  TRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTV 79
Query: 272 NEGRIQCPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDE--PPTA 327
               + CP+H W +  DG+C+ +P  +   R  + +S     + G++++W   E  PP  
Sbjct: 80  KGDEVACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDP 139
Query: 328 TI 329
            +
Sbjct: 140 AV 141

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	502
3gke_A	349	DDMC; rieske cluster, non-heme mononuclear iron, o	7e-57
3gkq_A	389	Terminal oxygenase component of carbazole 1,9A- di	4e-49
2de6_A	392	Terminal oxygenase component of carbazole; electro	4e-48
1z01_A	446	2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen	6e-48
2zyl_A	386	Possible oxidoreductase; KSHA, cholesterol, rieske	3e-47
3gcf_A	394	Terminal oxygenase component of carbazole 1,9A- di	4e-47
1vm9_A	111	Toluene-4-monooxygenase system protein C; structur	3e-15
3dqy_A	106	Toluene 1,2-dioxygenase system ferredoxin subunit;	5e-15
2b1x_A	470	Naphthalene dioxygenase large subunit; rieske non-	2e-14
2i7f_A	108	Ferredoxin component of dioxygenase; rieske ferred	3e-14
2gbw_A	454	Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy	4e-14
3vca_A	412	Ring-hydroxylating dioxygenase; rieske-type, monon	5e-14
3n0q_A	409	Putative aromatic-ring hydroxylating dioxygenase;	7e-14
3gzx_A	457	Biphenyl dioxygenase subunit alpha; rieskie, non-h	7e-14
2qpz_A	103	Naphthalene 1,2-dioxygenase system ferredoxin subu	8e-14
2bmo_A	447	Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni	1e-13
2de6_D	115	Ferredoxin component of carbazole; electron transf	2e-13
3gce_A	121	Ferredoxin component of carbazole 1,9A- dioxygenas	1e-12
3d89_A	157	Rieske domain-containing protein; CAsp target, rie	3e-12
1uli_A	460	Biphenyl dioxygenase large subunit; alpha3 BETA3 h	4e-12
1fqt_A	112	Rieske-type ferredoxin of biphenyl dioxygenase; 2F	5e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
2jza_A	130	Nitrite reductase [NAD(P)H] small subunit; ISP dom	5e-10
2jo6_A	113	Nitrite reductase [NAD(P)H] small subunit; all bet	6e-10
3c0d_A	119	Putative nitrite reductase NADPH (small subunit) o	2e-09

>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Length = 349

 Score =  191 bits (488), Expect = 7e-57
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 11/169 (6%)

Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
           ++N W+  A   +L +   +     + P  ++R  DG+   + + C HR  PL  G +  
Sbjct: 5   VRNAWYVAALPEELSE-KPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVN 63

Query: 274 GRIQCPYHGWEYSTDGKCEKMPSTQ---LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 330
           G +QCPYHG E+   G+C   P        ++ ++S P  E++ +IWIWPGD       P
Sbjct: 64  GHLQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALAD--P 121

Query: 331 CLLPPSGFEIHAE-----IVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374
             +P  G  +            +   + LL+DNL+DL HA + H +   
Sbjct: 122 GAIPDFGCRVDPAYRTVGGYGHVDCNYKLLVDNLMDLGHAQYVHRANAQ 170

>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Length = 389

 Score =  172 bits (437), Expect = 4e-49
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 13/189 (6%)

Query: 196 LPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCV 255
           +  +      P        +N W+PV  S ++ + + VP     E  ++ R  DG+   +
Sbjct: 10  IAERRTRAWAPYIDAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAI 68

Query: 256 QNTCAHRACPLHLG--SVNEGRIQCPYHGWEYSTD-GKCEKMPS----TQLRNVKIKSLP 308
            + C HR   L       ++  I C YHGW Y  D GK   + +     Q+    +K+ P
Sbjct: 69  ADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHALKTYP 128

Query: 309 CFEQEGMIWIWPGDEPPTATIPCLLP---PSGFEIHAEIVMELPIEHGLLLDNLLDLAHA 365
             E++G+++++ GD+ P      + P    +   +H +    +     + ++N  D  H 
Sbjct: 129 VREEKGLVFLFVGDQEPHDLAEDVPPGFLDADLAVHGQ-HRVVDANWRMGVENGFDAGHV 187

Query: 366 PFTHTSTFA 374
            F H S+  
Sbjct: 188 -FIHKSSIL 195

>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Length = 392

 Score =  170 bits (431), Expect = 4e-48
 Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 205 GPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 264
            P        +N W+PV FS ++ +          E  ++ R  DG   C+++ C HR  
Sbjct: 16  APYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGV 74

Query: 265 PLHLG--SVNEGRIQCPYHGWEYS-TDGKCEKMPS----TQLRNVKIKSLPCFEQEGMIW 317
            L +      +  I C YH W Y   DG    + +     Q+   K+K+ P  E +G ++
Sbjct: 75  QLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVF 134

Query: 318 IWPGDEPPTA----TIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF 373
           I+ GD  P      T P  L     EI       +     L ++N  D +H  + H  + 
Sbjct: 135 IYLGDGDPPPLARDTPPNFLDD-DMEILG-KNQIIKSNWRLAVENGFDPSHI-YIHKDSI 191

>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Length = 446

 Score =  171 bits (433), Expect = 6e-48
 Identities = 42/258 (16%), Positives = 78/258 (30%), Gaps = 33/258 (12%)

Query: 197 PRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQ 256
             K+ +   P +       N W+P  F+ +L++D +        P V+ R  +G    ++
Sbjct: 23  NAKTQSQYQPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALK 81

Query: 257 NTCAHRACPLHLGSV--NEGRIQCPYHGWEYSTD-GKCEKMPS----TQLRNVKIKSLPC 309
           + C HR   L        +  I C YHG+ +  + GK   + +      +    + + P 
Sbjct: 82  DQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPV 141

Query: 310 FEQEGMIWIWPGD-EPPTATIPCLLPPSGFEIHAE------------------------I 344
            E  GMI+++  + + P   +P L     F                             +
Sbjct: 142 HEVNGMIFVFVREDDFPDEDVPPLAHDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVHGM 201

Query: 345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRILGPLSNRYGISTTMYGAINHWH 404
                    +  +N  D AH      +T          LG L         +        
Sbjct: 202 HRTGFGNWRIACENGFDNAHILVHKDNTIVHAMDWVLPLGLLPTSDDCIAVVEDDDGPKG 261

Query: 405 LKAWKTGRTEYQAVRNTS 422
           +  W         + N  
Sbjct: 262 MMQWLFTDKWAPVLENQE 279

>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Length = 386

 Score =  167 bits (425), Expect = 3e-47
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 9/177 (5%)

Query: 206 PVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP 265
                 TR    W  +  + D  +      + F    V+F    G    +   C H    
Sbjct: 14  DAGALPTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGD 73

Query: 266 LHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDE 323
           L  G+V    + CP+H W +  DG+C+ +P  +   R  + +S     + G++++W   E
Sbjct: 74  LSEGTVKGDEVACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHE 133

Query: 324 --PPTA-----TIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF 373
             PP        IP        +     ++        ++DN+ D+AH  + H    
Sbjct: 134 GNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTDMAHFFYIHFGLP 190

>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Length = 394

 Score =  167 bits (423), Expect = 4e-47
 Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 11/169 (6%)

Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-- 271
             N W P AF  +L +   V      E  ++ R   G    + + CAHR  P     +  
Sbjct: 31  FDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTRA-KGEVKAIADGCAHRGVPFSKEPLCF 89

Query: 272 NEGRIQCPYHGWEYS-TDGKCEKMP----STQLRNVKIKSLPCFEQEGMIWIWPGDEPPT 326
             G + C YHGW Y   DG+   +     S  +  + IK  P    +G+++++ GDE P 
Sbjct: 90  KAGTVSCWYHGWTYDLDDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEPH 149

Query: 327 ATIPCLLPP--SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF 373
           A    L P           I   +     L ++N  D  H  F H ++ 
Sbjct: 150 ALSEDLPPGFLDEDTHLLGIRRTVQSNWRLGVENGFDTTHI-FMHRNSP 197

>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Length = 111

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 11/115 (9%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFE-EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 276
           +  +    D+    M  F+  +    +I   ++      Q  C H+   L  GS   G I
Sbjct: 2   FEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVI 61

Query: 277 QCPYHGWEYS-TDGKCEKMPSTQLR--NVKIKSLPCFEQEGMIWIWPGDEPPTAT 328
            C  H W ++   G         L    V++       +   I++      P   
Sbjct: 62  TCRAHLWTFNDGTGHGINPDDAALAEYPVEV-------KGDDIYVSTKGILPNKA 109

>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} Length = 106

 Score = 70.0 bits (172), Expect = 5e-15
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 12/105 (11%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W  +    DL    M  ++   EP ++          VQ+TC H    L  G ++   ++
Sbjct: 2   WTYILRQGDLPPGEMQRYEGGPEPVMVCNVDGEF-FAVQDTCTHGDWALSDGYLDGDIVE 60

Query: 278 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE---QEGMIWI 318
           C  H  ++    GK + +P+        K +  F    +   + +
Sbjct: 61  CTLHFGKFCVRTGKVKALPAC-------KPIKVFPIKVEGDEVHV 98

>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A Length = 470

 Score = 74.2 bits (182), Expect = 2e-14
 Identities = 43/223 (19%), Positives = 76/223 (34%), Gaps = 35/223 (15%)

Query: 218 WFPVAFSTDLKD--DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVN 272
           W  +A  +++ +  D +V     E+ +++ R + G      N C HR    C   +G  N
Sbjct: 46  WVFLAHESEIPERGDYVV-RYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMG--N 102

Query: 273 EGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLPCFEQ-EGMIWIWPGDE 323
               +CPYHGW YS  G    +P+ +          +  ++ +P     +G+I+      
Sbjct: 103 TSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPH 162

Query: 324 PP---------TATIPCLLPPSGFEIHAEIVMELPIEHG---LLLDN-LLDLAHAPFTHT 370
                         +  +L  S   +      +  +      L  DN + D  H   TH 
Sbjct: 163 ADSLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHR 222

Query: 371 STFAKGWSVPRILGPL-----SNRYGISTTMYGAINHWHLKAW 408
           S    G + P     L        +G    + G      L  +
Sbjct: 223 SMVELGLAPPDPQFALYGEHIHTGHGHGLGIIGPPPGMPLPEF 265

>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Length = 108

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
              +     +KD   V     + P +     DG      N C H    L  G  +   I+
Sbjct: 4   KLRLCQVASVKDGEPVAVYQEKMPALAVYNVDGEVFVTDNLCTHGNAMLTDGYQDGTIIE 63

Query: 278 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTA 327
           CP+HG  +    G  +  P      + IK+ P   ++G + I   D+P  +
Sbjct: 64  CPFHGGSFDIATGAAKAFPCQ----IPIKTYPVTIEDGWVCI---DQPKES 107

>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A Length = 454

 Score = 73.3 bits (180), Expect = 4e-14
 Identities = 35/185 (18%), Positives = 60/185 (32%), Gaps = 28/185 (15%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
           E+  ++    DG      N+C+HR    C    G  N     C YHGW +  DG    +P
Sbjct: 60  EDKVILSHQSDGTFRAFINSCSHRGNQICHADSG--NAKAFVCNYHGWVFGQDGSLVDVP 117

Query: 296 STQ--------LRNVKIKSLPCFEQEGMIWIWPGDEPP---------TATIPCLLPPSGF 338
                       + +  KS+     +G I+     E P            +  +   +G 
Sbjct: 118 LESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAPSLEDYLGEFRYYLDTIWEGAGG 177

Query: 339 EIHAEIVMELPIEHG---LLLDN-LLDLAHAPFTHTSTFAKGWSVPRILGPLSNRYGIST 394
            +         +      +  +N + D  H  +TH +  ++      + G   NR  I  
Sbjct: 178 GMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALSQIG--GELAGLAGNRADIPF 235

Query: 395 TMYGA 399
              G 
Sbjct: 236 DDLGL 240

>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A Length = 412

 Score = 72.9 bits (179), Expect = 5e-14
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 43/215 (20%)

Query: 218 WFPVAFSTDLKD--DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEG 274
           W        L                 VI R +DG      N+C HR   +         
Sbjct: 44  WLYAVPVCQLAKAGSY-TTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVA 102

Query: 275 RIQCPYHGWEYSTDGKCEKMPSTQ---------LRNVKIKSLPCFEQEGMIWI-WPGDEP 324
           ++ CPYH W Y  DGK                 L+ V +++L     +G+I+I      P
Sbjct: 103 KLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNL-----DGLIYICLSDTPP 157

Query: 325 PTATIPCLLPPSGFEIHAEIVMELPIEHG---------------LLLDNLLDLAHAPFTH 369
              T          ++    +    ++                 L+ +N  +  H    H
Sbjct: 158 DFQTF--------AQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNH 209

Query: 370 TSTFAKGWSVPRILGPLSNRYGISTTMYGAINHWH 404
            +   + + +   +  +    G+S  +    +   
Sbjct: 210 PA-LCRSFPLDPEVAGVQADGGVSKKLQAHFDRCE 243

>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Length = 409

 Score = 72.4 bits (178), Expect = 7e-14
 Identities = 34/215 (15%), Positives = 58/215 (26%), Gaps = 42/215 (19%)

Query: 218 WFPVAFSTDLKD--DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEG 274
           W     + +L       V         +I RG D +     N C HR   +      N  
Sbjct: 42  WLFAIPACELDKPGSY-VTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKGNNP 100

Query: 275 RIQCPYHGWEYSTDGKCEKMPSTQ---------LRNVKIKSLPCFEQEGMIWI-WPGDEP 324
           ++ CPYH W Y  DG+                 L+ V  + L      G+I+I    + P
Sbjct: 101 KLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCREL-----AGLIYICLADEAP 155

Query: 325 PTATIPCLLPPSGFEIHAEIVMELPIEHG---------------LLLDNLLDLAHAPFTH 369
                         E+    +    + +                L+ +N  +  H    H
Sbjct: 156 DFERF--------AEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNH 207

Query: 370 TSTFAKGWSVPRILGPLSNRYGISTTMYGAINHWH 404
            +        P + G        +   +       
Sbjct: 208 PALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQA 242

>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* Length = 457

 Score = 72.6 bits (178), Expect = 7e-14
 Identities = 29/199 (14%), Positives = 52/199 (26%), Gaps = 31/199 (15%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
           E+P ++ R KD       N C HR         G  N     C YHGW Y   G    +P
Sbjct: 80  EDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGG--NAKAFTCTYHGWAYDIAGNLVNVP 137

Query: 296 STQ--------------LRNVKIKSLPCFEQEGMIWIWPGDEPP---------TATIPCL 332
             +                +           +G+++     E P            +  +
Sbjct: 138 FEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDLKTYLSDAMPYMDVM 197

Query: 333 LPPSGFE---IHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRILGPLSNR 389
           L  +      I       +P       +      +   T +        +P  +     +
Sbjct: 198 LDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLAGLPPEMDLTQIQ 257

Query: 390 YGISTTMYGAINHWHLKAW 408
              +   + +    H   W
Sbjct: 258 LSKNGNQFRSAWGGHGAGW 276

>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Length = 103

 Score = 66.5 bits (163), Expect = 8e-14
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 12/105 (11%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W      +D+ +  ++      +   ++  +  I     N C H +  +  G +    I+
Sbjct: 4   WIEAVALSDILEGDVLGVTVEGKELALYEVEGEI-YATDNLCTHGSARMSDGYLEGREIE 62

Query: 278 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE---QEGMIWI 318
           CP H   +    GK    P T       +++  +    +   + I
Sbjct: 63  CPLHQGRFDVCTGKALCAPVT-------QNIKTYPVKIENLRVMI 100

>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* Length = 447

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 28/167 (16%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
            +  ++ R  DG      N C HR         G  N     C YHGW Y ++G+ + +P
Sbjct: 59  VDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAG--NAKGFVCGYHGWGYGSNGELQSVP 116

Query: 296 STQ--------LRNVKIKSLPCFEQ-EGMIWIWPGDEPPT------ATIPCLLPPSGFEI 340
             +         + + +K +P  E   G I+     E P            L P   +  
Sbjct: 117 FEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSG 176

Query: 341 HAEIV---MELPIEHG---LLLDNLL-DLAHAPFTHTSTFAKGWSVP 380
             E+V    ++ +         +N + D  H  +TH +    G SV 
Sbjct: 177 GLELVGPPGKVVV-KANWKSFAENFVGDGYHVGWTHAAALRAGQSVF 222

>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Length = 115

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWV-IFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 276
           W  V  ++D++  T+   +      + ++R  D      ++TC H    L  G+++   I
Sbjct: 5   WLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQF-YATEDTCTHGIASLSEGTLDGDVI 63

Query: 277 QCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 330
           +CP+HG  ++   G     P T    V +       +EG +++    +       
Sbjct: 64  ECPFHGGAFNVCTGMPASSPCT----VPLGVFEVEVKEGEVYVAGEKKLEHHHHH 114

>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Length = 121

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE--GR 275
              VA    LK      FD   +  ++ R  D +   + N C+H    L +G  +     
Sbjct: 11  PVRVATLDQLKPGVPTAFDVDGDEVMVVRDGDSV-YAISNLCSHAEAYLDMGVFHAESLE 69

Query: 276 IQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWP--GDEPP 325
           I+CP H   +    G    +P        +++         I + P   D   
Sbjct: 70  IECPLHVGRFDVRTGAPTALPCVL----PVRAYDVVVDGTEILVAPKEADHHH 118

>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Length = 157

 Score = 63.8 bits (155), Expect = 3e-12
 Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 16/125 (12%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV----NE 273
              V    D++    +     +   VIF  K      +   C H   PLHLG +     +
Sbjct: 17  SVCVGREEDIRKSERMTAVVHDREVVIFYHKGEY-HAMDIRCYHSGGPLHLGEIEDFNGQ 75

Query: 274 GRIQCPYHGWEYS-TDGKCEKMPST----------QLRNVKIKSLPCFEQEGMIWIWPGD 322
             I CP+H ++ +   G+                   + VK +        G I++    
Sbjct: 76  SCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSK 135

Query: 323 EPPTA 327
           EP   
Sbjct: 136 EPFKC 140

>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A Length = 460

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
           E+P ++ R K+G      N C HR    C    G  N     C YHGW Y T G    +P
Sbjct: 78  EDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGG--NAKSFTCSYHGWAYDTGGNLVSVP 135

Query: 296 STQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPP 325
             +         +           +G+I+     + P
Sbjct: 136 FEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP 172

>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Length = 112

 Score = 61.5 bits (150), Expect = 5e-12
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 13/106 (12%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-I 276
           +  V    D+ +   +  +       IF     +    Q+ C H    L  G   EG  +
Sbjct: 6   FTRVCDRRDVPEGEALKVESGGTSVAIFNVDGEL-FATQDRCTHGDWSLSDGGYLEGDVV 64

Query: 277 QCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE---QEGMIWI 318
           +C  H  ++    GK +  P         ++L  F    ++  + +
Sbjct: 65  ECSLHMGKFCVRTGKVKSPPPC-------EALKIFPIRIEDNDVLV 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 2e-10
 Identities = 79/504 (15%), Positives = 149/504 (29%), Gaps = 140/504 (27%)

Query: 22  INTKKSVRGGFRVFALF---GEE------GGLVDK-----KSAWSTLF-DVEDPRSKVPQ 66
           I +K +V G  R+F       EE        ++        S   T             +
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 67  CKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI------ 120
            + +  + NQ    A+Y++     R +         + K+ + L  L R  K++      
Sbjct: 115 QRDRLYNDNQVF--AKYNV----SRLQP--------YLKLRQALLEL-RPAKNVLIDGVL 159

Query: 121 GTMKKELAELQEDLAQAHR-------QVH-ISEARVATALDKLAYMEALVNDRLLQDRHT 172
           G+ K  +A    D+  +++       ++  ++     +    L  ++ L+    +    T
Sbjct: 160 GSGKTWVAL---DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL--YQIDPNWT 214

Query: 173 SGTDQTCASP----STSKQSLDIVKGKLPRKSL----NVSGP--VQPYN--------TRL 214
           S +D +        S   +   ++K K     L    NV        +N        TR 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 215 KNFWFPVAFSTDLKDDTMVPFD----CFEEP--------WVIFRGKDGIPGCVQNTCAHR 262
           K     V         T +  D                 ++  R +D +P          
Sbjct: 275 KQ----VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LP--------RE 321

Query: 263 AC---PLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIW-- 317
                P  L  + E         W+      C+K+  T +    +  L   E   M    
Sbjct: 322 VLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKL--TTIIESSLNVLEPAEYRKMFDRL 378

Query: 318 -IWPGDEP-PTATIPCLLPPSGFEIHAEIVMEL---------PIE-----HGLLLDNLLD 361
            ++P     PT  +  +           +V +L         P E       + L+  + 
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 362 LAHAPFTHTS-----TFAKGWSVPRILGPLSNRYGISTTMYGAINHWHLKA------WKT 410
           L +    H S        K +    ++ P  ++Y      Y  I H HLK          
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-----FYSHIGH-HLKNIEHPERMTL 492

Query: 411 GRTEY-------QAVRNTSSPASC 427
            R  +       Q +R+ S+  + 
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNA 516

>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Length = 130

 Score = 56.4 bits (136), Expect = 5e-10
 Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 12/131 (9%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFR-GKDGIPGCVQNTCAH-RACPLHLGSVNEGR 275
           W  V    D+   T V     ++   +FR   D     + N     +A  L  G V E +
Sbjct: 4   WTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQ 63

Query: 276 ----IQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 330
               +  P     +   DG C +  +       + +       G + I   D        
Sbjct: 64  DDLWVASPLKKQHFRLYDGFCLEDGA-----YSVAAYDTQVTNGNVQISIADSDVAVDNS 118

Query: 331 CLLPPSGFEIH 341
             LP      H
Sbjct: 119 QPLPLEHHHHH 129

>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Length = 113

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 12/111 (10%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFR-GKDGIPGCVQNTCAH-RACPLHLGSVNEGR 275
           W  +    D+  +T V     +E   IFR         + N      +  L  G + E +
Sbjct: 7   WKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQ 66

Query: 276 ----IQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 321
               +  P     +  +DG C +          +K      ++G++ +  G
Sbjct: 67  GELWVASPLKKQRFRLSDGLCMEDEQ-----FSVKHYEARVKDGVVQLRGG 112

>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Length = 119

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 11/107 (10%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSV----N 272
              +    DL            E   +F   D     VQ+     +A  +  G V     
Sbjct: 6   KVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDING 65

Query: 273 EGRIQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 318
           E  +  P +   +S   G+C +  +       +K+      +  +  
Sbjct: 66  EMCVASPLYKQHFSLKSGQCLEDEA-----HCLKTWRVTVDDNQVCY 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	502
3gke_A	349	DDMC; rieske cluster, non-heme mononuclear iron, o	100.0
3n0q_A	409	Putative aromatic-ring hydroxylating dioxygenase;	100.0
3gzx_A	457	Biphenyl dioxygenase subunit alpha; rieskie, non-h	100.0
3vca_A	412	Ring-hydroxylating dioxygenase; rieske-type, monon	100.0
2bmo_A	447	Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni	100.0
2zyl_A	386	Possible oxidoreductase; KSHA, cholesterol, rieske	100.0
2gbw_A	454	Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy	100.0
2b1x_A	470	Naphthalene dioxygenase large subunit; rieske non-	100.0
1z01_A	446	2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen	100.0
3gcf_A	394	Terminal oxygenase component of carbazole 1,9A- di	100.0
3gkq_A	389	Terminal oxygenase component of carbazole 1,9A- di	100.0
2de6_A	392	Terminal oxygenase component of carbazole; electro	100.0
1uli_A	460	Biphenyl dioxygenase large subunit; alpha3 BETA3 h	100.0
2qpz_A	103	Naphthalene 1,2-dioxygenase system ferredoxin subu	99.93
1vm9_A	111	Toluene-4-monooxygenase system protein C; structur	99.93
2i7f_A	108	Ferredoxin component of dioxygenase; rieske ferred	99.93
1fqt_A	112	Rieske-type ferredoxin of biphenyl dioxygenase; 2F	99.93
2de6_D	115	Ferredoxin component of carbazole; electron transf	99.93
3dqy_A	106	Toluene 1,2-dioxygenase system ferredoxin subunit;	99.93
2jo6_A	113	Nitrite reductase [NAD(P)H] small subunit; all bet	99.92
2jza_A	130	Nitrite reductase [NAD(P)H] small subunit; ISP dom	99.92
3c0d_A	119	Putative nitrite reductase NADPH (small subunit) o	99.92
3gce_A	121	Ferredoxin component of carbazole 1,9A- dioxygenas	99.92
3d89_A	157	Rieske domain-containing protein; CAsp target, rie	99.91
4aiv_A	119	Probable nitrite reductase [NAD(P)H] small subuni;	99.9
4aay_B	175	AROB; oxidoreductase, rieske, iron sulfur, molybdo	99.87
1rie_A	129	Rieske iron-sulfur protein; oxidoreductase, cytoch	99.84
1rfs_A	139	Rieske protein; iron-sulfur protein, electron tran	99.81
1g8k_B	133	Arsenite oxidase; molybdopterin, [3Fe-4S] cluster,	99.81
3azc_A	133	Cytochrome B6-F complex iron-sulfur subunit; riesk	99.63
3cx5_E	185	Cytochrome B-C1 complex subunit rieske, mitochondr	99.74
2qjy_C	187	Ubiquinol-cytochrome C reductase iron-sulfur SUBU;	99.72
1pp9_E	196	Ubiquinol-cytochrome C reductase iron-sulfur SUBU	99.72
2nwf_A	141	Ubiquinol-cytochrome C reductase iron-sulfur SUBU;	99.71
1nyk_A	165	Rieske iron-sulfur protein; beta barrel, iron sulf	99.7
1vf5_D	179	Rieske iron-sulfur protein; photosynthesis, membra	99.67
1jm1_A	204	Rieske iron-sulfur protein SOXF; electron transpor	99.56

>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*

Probab=100.00  E-value=5.2e-38  Score=323.55  Aligned_cols=167  Identities=29%  Similarity=0.624  Sum_probs=143.3

Q ss_pred             cccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCC
Q 010738          210 YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG  289 (502)
Q Consensus       210 ~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG  289 (502)
                      |.+.+++.|++||+++|| +|+++.++++|++|+|+|+.||+++|+.|+|||||++|+.|.++++.|+||||||+||+||
T Consensus         1 m~~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G   79 (349)
T 3gke_A            1 MATFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGG   79 (349)
T ss_dssp             -CCCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTC
T ss_pred             CCcccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCC
Confidence            346788999999999999 8999999999999999999999999999999999999999999899999999999999999


Q ss_pred             CcccCCC-cc--cccccccccceEEeeceEEEecCCCC-CC-CCCCCCC--CCCCceEeEEEEEEEecccchhccccCCC
Q 010738          290 KCEKMPS-TQ--LRNVKIKSLPCFEQEGMIWIWPGDEP-PT-ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDL  362 (502)
Q Consensus       290 ~cv~vP~-~~--~~~~~L~~~pV~e~~G~IwV~lg~~~-p~-~~lpe~~--~~~~~~v~~~~~~~v~~Nwk~~vEN~lD~  362 (502)
                      +|+.+|+ ..  ....+|++|||.+++|+|||++++++ +. ..+|++.  +..++.+. ...++++||||+++||++|+
T Consensus        80 ~~~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~  158 (349)
T 3gke_A           80 QCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDL  158 (349)
T ss_dssp             CEEECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCG
T ss_pred             CccccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhcccc
Confidence            9999995 21  12578999999999999999998764 21 1245442  23456654 45679999999999999999


Q ss_pred             CCCCcCCcccccCCCC
Q 010738          363 AHAPFTHTSTFAKGWS  378 (502)
Q Consensus       363 yH~~~vH~~tfg~~~~  378 (502)
                      ||++++|+++++....
T Consensus       159 ~H~~~~H~~~~~~~~~  174 (349)
T 3gke_A          159 GHAQYVHRANAQTDAF  174 (349)
T ss_dssp             GGHHHHTHHHHCCTTG
T ss_pred             ccchhccchhhcCccc
Confidence            9999999999987654

>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}

Probab=100.00  E-value=8.9e-38  Score=328.65  Aligned_cols=180  Identities=20%  Similarity=0.287  Sum_probs=156.4

Q ss_pred             cccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEE
Q 010738          177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCV  255 (502)
Q Consensus       177 ~~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~  255 (502)
                      ..+.+.|+|+++|+.|+++||+                 +.|++||+++||++ |++++++++|++|+|+|+.||+++|+
T Consensus        18 ~lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~   80 (409)
T 3n0q_A           18 ALDQAFYTDAEVFQTDLQEIFY-----------------KEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAF   80 (409)
T ss_dssp             CCCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             cCCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEee
Confidence            4455588999999999999996                 79999999999986 89999999999999999999999999


Q ss_pred             eecCCCCCCCCCC-CCccceeeeeeecceEEcCCCCcccCCCcc----cccccccccceEEeeceEEEecCCCCCCCCCC
Q 010738          256 QNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP  330 (502)
Q Consensus       256 ~N~CpHRGa~Ls~-G~v~~~~IvCPYHGW~FdldG~cv~vP~~~----~~~~~L~~~pV~e~~G~IwV~lg~~~p~~~lp  330 (502)
                      .|+|||||++|+. |.++++.|+||||||+||+||+|+++|...    ..+.+|++|+|++++|+|||++++++|  +++
T Consensus        81 ~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~--~l~  158 (409)
T 3n0q_A           81 HNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAP--DFE  158 (409)
T ss_dssp             ESCCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CCH
T ss_pred             cCcCCcCcCCccCcCccCCCEEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceEEEEEECCEEEEEeCCCCC--ChH
Confidence            9999999999996 888889999999999999999999999753    245789999999999999999987754  454


Q ss_pred             CCCC----------CCCceEeEEEEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738          331 CLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK  375 (502)
Q Consensus       331 e~~~----------~~~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~  375 (502)
                      ++++          ...+.+.....++++||||+++||++|+||++++|+++++.
T Consensus       159 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~  213 (409)
T 3n0q_A          159 RFAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRT  213 (409)
T ss_dssp             HHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGT
T ss_pred             HhhhhhhhhhccccCCCeEEeeEEEEEEecchHhhhhhccccccccccCcchhhc
Confidence            4432          12344445567889999999999999999999999988764

>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*

Probab=100.00  E-value=4.3e-37  Score=327.51  Aligned_cols=181  Identities=19%  Similarity=0.291  Sum_probs=156.4

Q ss_pred             cccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEE
Q 010738          177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCV  255 (502)
Q Consensus       177 ~~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~  255 (502)
                      ..+...|||+++|+.|+++||.                 +.|++||+++||++ |++++++++|++|+|+|+.||+++||
T Consensus        34 ~~~~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A~   96 (457)
T 3gzx_A           34 KLDARIYADQDLYQLELERVFG-----------------RSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVF   96 (457)
T ss_dssp             EEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             cCCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEEE
Confidence            3456689999999999999996                 79999999999986 79999999999999999999999999


Q ss_pred             eecCCCCCCCCCCCC-ccceeeeeeecceEEcCCCCcccCCCcc--------------cccccccccceEEeeceEEEec
Q 010738          256 QNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ--------------LRNVKIKSLPCFEQEGMIWIWP  320 (502)
Q Consensus       256 ~N~CpHRGa~Ls~G~-v~~~~IvCPYHGW~FdldG~cv~vP~~~--------------~~~~~L~~~pV~e~~G~IwV~l  320 (502)
                      .|+|||||++|+.|. ++++.|+||||||+||++|+|+.+|+.+              ....+|++|+|.+++|+||||+
T Consensus        97 ~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~  176 (457)
T 3gzx_A           97 LNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANW  176 (457)
T ss_dssp             ESCCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEES
T ss_pred             eCcCCCCCcCccCCCCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEec
Confidence            999999999999985 5778999999999999999999999853              1236799999999999999999


Q ss_pred             CCCCCCCCCCCCCCC-------------CCceEe-EEEEEEEecccchhcccc-CCCCCCC-cCCcccccCC
Q 010738          321 GDEPPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAP-FTHTSTFAKG  376 (502)
Q Consensus       321 g~~~p~~~lpe~~~~-------------~~~~v~-~~~~~~v~~Nwk~~vEN~-lD~yH~~-~vH~~tfg~~  376 (502)
                      ++++|  ++++++++             .++.+. +...+.++||||+++||+ +|+||++ ++|.++++.+
T Consensus       177 ~~~ap--~l~e~lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~~~  246 (457)
T 3gzx_A          177 DPEAP--DLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLAG  246 (457)
T ss_dssp             CTTSC--CHHHHTTTCHHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHHHT
T ss_pred             CCCCC--ChHHHHhhhHHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhhcc
Confidence            88754  55555432             234444 246788999999999999 8999999 9999887654

>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A

Probab=100.00  E-value=3.1e-37  Score=324.79  Aligned_cols=179  Identities=18%  Similarity=0.260  Sum_probs=155.5

Q ss_pred             ccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEe
Q 010738          178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQ  256 (502)
Q Consensus       178 ~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~  256 (502)
                      .+.+.|+|+++|+.|+++||+                 +.|++||+++||++ |++++++++|++|+|+|+.||+++|+.
T Consensus        21 lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~   83 (412)
T 3vca_A           21 LEQPFYTSPEVYALDLQHIFY-----------------KQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFH   83 (412)
T ss_dssp             CCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             CCHHHcCCHHHHHHHHHHHHh-----------------ccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEec
Confidence            445578999999999999996                 78999999999995 899999999999999999999999999


Q ss_pred             ecCCCCCCCCC-CCCccceeeeeeecceEEcCCCCcccCCCcc----cccccccccceEEeeceEEEecCCCCCCCCCCC
Q 010738          257 NTCAHRACPLH-LGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC  331 (502)
Q Consensus       257 N~CpHRGa~Ls-~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~----~~~~~L~~~pV~e~~G~IwV~lg~~~p~~~lpe  331 (502)
                      |+|||||++|+ .|.++++.|+||||||+||++|+|+.+|...    ..+.+|++|+|++++|+|||++++++|  ++++
T Consensus        84 n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p--~l~~  161 (412)
T 3vca_A           84 NSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPP--DFQT  161 (412)
T ss_dssp             SSCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CCHH
T ss_pred             ccCCCCCCEeecccccCCCEEEcCCCCCEEcCCCccccCCccccccCcccCCCcEEEEEEECCEEEEEecCCCC--CHHH
Confidence            99999999998 6888889999999999999999999999753    235789999999999999999987754  4544


Q ss_pred             CCC----------CCCceEeEEEEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738          332 LLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK  375 (502)
Q Consensus       332 ~~~----------~~~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~  375 (502)
                      +++          ...+.+.....++++||||+++||++|+||++++|+++++.
T Consensus       162 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~  215 (412)
T 3vca_A          162 FAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRS  215 (412)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTT
T ss_pred             HhhhhHHhhccccCCCeEEeEEEEEEEccCchhhHhhccccccCcccCcchhhc
Confidence            432          12334445567889999999999999999999999988764

>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*

Probab=100.00  E-value=1.3e-36  Score=322.17  Aligned_cols=180  Identities=19%  Similarity=0.293  Sum_probs=154.3

Q ss_pred             ccc-CCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEE
Q 010738          177 QTC-ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGC  254 (502)
Q Consensus       177 ~~~-~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A  254 (502)
                      ..+ .+.|||+++|+.|++++|.                 +.|++||+++||++ |+++++.++|++|+|+|+.||+++|
T Consensus        12 ~~~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a   74 (447)
T 2bmo_A           12 LTQKLLIHGDKELFQHELKTIFA-----------------RNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRA   74 (447)
T ss_dssp             CEEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred             CCCccceeCCHHHHHHHHHHhhc-----------------cCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEE
Confidence            344 5689999999999999996                 68999999999985 8899999999999999999999999


Q ss_pred             EeecCCCCCCCCCCCCc-cceeeeeeecceEEcCCCCcccCCCcc--------cccccccccc-eEEeeceEEEecCCCC
Q 010738          255 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLP-CFEQEGMIWIWPGDEP  324 (502)
Q Consensus       255 ~~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~FdldG~cv~vP~~~--------~~~~~L~~~p-V~e~~G~IwV~lg~~~  324 (502)
                      +.|+|||||++|+.|.. +++.|+||||||+||+||+|+.+|..+        ....+|++|| |++++|+|||++++++
T Consensus        75 ~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~  154 (447)
T 2bmo_A           75 FLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEA  154 (447)
T ss_dssp             EESBCTTTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTC
T ss_pred             EeccCcCCCCCccccccCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCC
Confidence            99999999999999865 568999999999999999999999743        1246899998 9999999999998765


Q ss_pred             CCCCCCCCCC------------CCCceEe-EEEEEEEecccchhcccc-CCCCCCCcCCcccccC
Q 010738          325 PTATIPCLLP------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAK  375 (502)
Q Consensus       325 p~~~lpe~~~------------~~~~~v~-~~~~~~v~~Nwk~~vEN~-lD~yH~~~vH~~tfg~  375 (502)
                      |  +++++++            +.++.+. ....++++||||+++||+ +|+||++++|..+++.
T Consensus       155 ~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~  217 (447)
T 2bmo_A          155 P--PLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRA  217 (447)
T ss_dssp             C--CHHHHHTTHHHHHHHHHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred             C--CHHHHhccHHHHHHHHhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhhc
Confidence            4  4444432            2345554 355789999999999999 7999999999877765

>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.2e-35  Score=309.97  Aligned_cols=173  Identities=20%  Similarity=0.399  Sum_probs=141.8

Q ss_pred             cccccCCCCCcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeee
Q 010738          200 SLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCP  279 (502)
Q Consensus       200 ~l~~~gp~~p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCP  279 (502)
                      .+.+++++++ ..+|.+.|++||+++||++|+++.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||
T Consensus         9 ~~~~~~~~~~-~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~Cp   87 (386)
T 2zyl_A            9 GVREIDAGAL-PTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACP   87 (386)
T ss_dssp             -----CCCCC-CSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECT
T ss_pred             eeEEccCCCC-chhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeC
Confidence            4456677765 457778999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             ecceEEcCCCCcccCCCccc--ccccccccceEEeeceEEEecCCCC-CC---CCCCCCCC--CCCceEeEEEEEEEe-c
Q 010738          280 YHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEP-PT---ATIPCLLP--PSGFEIHAEIVMELP-I  350 (502)
Q Consensus       280 YHGW~FdldG~cv~vP~~~~--~~~~L~~~pV~e~~G~IwV~lg~~~-p~---~~lpe~~~--~~~~~v~~~~~~~v~-~  350 (502)
                      ||||+||++|+|+.+|....  ...+|++|||++++|+|||+++++. ++   ..+|++..  ..++.......++++ |
T Consensus        88 yHgw~f~~~G~~~~~P~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  167 (386)
T 2zyl_A           88 FHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGS  167 (386)
T ss_dssp             TTCCEEETTSBEEECTTCSSCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESS
T ss_pred             CCCCEECCCCCccccCcccccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCc
Confidence            99999999999999998543  2368999999999999999997653 21   12343322  234443344567899 9


Q ss_pred             ccchhccccCCCCCCCcCCcccc
Q 010738          351 EHGLLLDNLLDLAHAPFTHTSTF  373 (502)
Q Consensus       351 Nwk~~vEN~lD~yH~~~vH~~tf  373 (502)
                      |||.++||++|+||++++|+++.
T Consensus       168 nwk~~~EN~~D~~H~~~~H~~~~  190 (386)
T 2zyl_A          168 NCRDIIDNVTDMAHFFYIHFGLP  190 (386)
T ss_dssp             CGGGGGGGGGCSTHHHHTTCEEE
T ss_pred             CHHhHhhhcccccchhhhCcCcc
Confidence            99999999999999999999754

>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A

Probab=100.00  E-value=2.9e-36  Score=320.22  Aligned_cols=180  Identities=18%  Similarity=0.307  Sum_probs=154.1

Q ss_pred             cccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEE
Q 010738          177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCV  255 (502)
Q Consensus       177 ~~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~  255 (502)
                      ..+.+.|||+++|+.|++++|.                 +.|++||+++||++ |+++++.++|++|+|+|+.+|+++|+
T Consensus        14 ~~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~   76 (454)
T 2gbw_A           14 SQSRQVFWDEDVYALEIERIFS-----------------RAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAF   76 (454)
T ss_dssp             EEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             ccCHHHcCCHHHHHHHHHHHhh-----------------cCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEE
Confidence            3456689999999999999996                 68999999999995 89999999999999999999999999


Q ss_pred             eecCCCCCCCCCCCCc-cceeeeeeecceEEcCCCCcccCCCccc--------ccccccccceEEeeceEEEecCCCCCC
Q 010738          256 QNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPPT  326 (502)
Q Consensus       256 ~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~FdldG~cv~vP~~~~--------~~~~L~~~pV~e~~G~IwV~lg~~~p~  326 (502)
                      .|+|||||++|+.|.. +++.|+||||||+||++|+|+.+|..+.        ...+|++|+|++++|+|||++++++| 
T Consensus        77 ~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p-  155 (454)
T 2gbw_A           77 INSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAP-  155 (454)
T ss_dssp             ESSCTTTCCCSCCCSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCC-
T ss_pred             eccCCCCCCCCcccccCCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCC-
Confidence            9999999999998765 5779999999999999999999997531        24679999999999999999987654 


Q ss_pred             CCCCCCCC-------------CCCceEe-EEEEEEEecccchhcccc-CCCCCCCcCCcccccC
Q 010738          327 ATIPCLLP-------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAK  375 (502)
Q Consensus       327 ~~lpe~~~-------------~~~~~v~-~~~~~~v~~Nwk~~vEN~-lD~yH~~~vH~~tfg~  375 (502)
                       +++++++             +.++.+. ....++++||||+++||+ +|+||++++|..+++.
T Consensus       156 -~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~~  218 (454)
T 2gbw_A          156 -SLEDYLGEFRYYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALSQ  218 (454)
T ss_dssp             -CHHHHHGGGHHHHHHHHTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred             -CHHHHhhhhHHHHHHHHhcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHhc
Confidence             4554432             1345554 355788999999999999 7999999999877765

>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A

Probab=100.00  E-value=9.3e-36  Score=317.70  Aligned_cols=182  Identities=19%  Similarity=0.326  Sum_probs=153.2

Q ss_pred             ccccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEE
Q 010738          176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGC  254 (502)
Q Consensus       176 ~~~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A  254 (502)
                      ...+.+.|||+++|+.|++++|.                 +.|++||+++||++ |++++++++|++|+|+|+.||+++|
T Consensus        21 ~~lp~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~a   83 (470)
T 2b1x_A           21 WTVPAAIINDPEVHDVERERIFG-----------------HAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRG   83 (470)
T ss_dssp             CEEEGGGSSCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred             CcCCHHHcCCHHHHHHHHHHHhh-----------------cCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence            34556789999999999999995                 68999999999997 7899999999999999999999999


Q ss_pred             EeecCCCCCCCCCCCCccc-eeeeeeecceEEcCCCCcccCCCccc--------cccccccc-ceEEeeceEEEecCCCC
Q 010738          255 VQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSL-PCFEQEGMIWIWPGDEP  324 (502)
Q Consensus       255 ~~N~CpHRGa~Ls~G~v~~-~~IvCPYHGW~FdldG~cv~vP~~~~--------~~~~L~~~-pV~e~~G~IwV~lg~~~  324 (502)
                      +.|+|||||++|+.|...+ +.|+||||||+||+||+|+.+|..+.        .+.+|.++ .+++++|+|||++++++
T Consensus        84 ~~n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~  163 (470)
T 2b1x_A           84 HLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHA  163 (470)
T ss_dssp             EESSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTC
T ss_pred             EecccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCC
Confidence            9999999999999987654 78999999999999999999998531        24678888 46667999999998765


Q ss_pred             CCCCCCCCCC-------------CCCceEeE-EEEEEEecccchhcccc-CCCCCCCcCCcccccCC
Q 010738          325 PTATIPCLLP-------------PSGFEIHA-EIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAKG  376 (502)
Q Consensus       325 p~~~lpe~~~-------------~~~~~v~~-~~~~~v~~Nwk~~vEN~-lD~yH~~~vH~~tfg~~  376 (502)
                      |  +++++++             ..++.+.. ...++++||||+++||+ +|+||++++|+.+++.+
T Consensus       164 ~--~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~~~  228 (470)
T 2b1x_A          164 D--SLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVELG  228 (470)
T ss_dssp             C--CHHHHHGGGHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHHHT
T ss_pred             C--CHHHHhcchhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhhcc
Confidence            4  4444432             23455543 45688999999999999 99999999999877543

>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*

Probab=100.00  E-value=5.7e-35  Score=309.92  Aligned_cols=172  Identities=20%  Similarity=0.343  Sum_probs=143.4

Q ss_pred             CChhhhH--hhhccCCCCcccccCCCCCcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCC
Q 010738          184 TSKQSLD--IVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH  261 (502)
Q Consensus       184 ts~~~~~--~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpH  261 (502)
                      +|+++|+  .|++.+|+                 +.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||
T Consensus        25 ~~~~~~~~~~e~~~if~-----------------~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~CpH   86 (446)
T 1z01_A           25 KTQSQYQPYKDAAWGFI-----------------NHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLH   86 (446)
T ss_dssp             HHHGGGHHHHHCTTCBC-----------------SEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTT
T ss_pred             cCHHHhhhhhhhhhhhh-----------------hceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCC
Confidence            9999999  88888875                 7999999999999899999999999999999 69999999999999


Q ss_pred             CCCCCCCCC--ccceeeeeeecceEEcC-CCCcccCCCccc----ccccccccceEEeeceEEEecCCCC----CCCCCC
Q 010738          262 RACPLHLGS--VNEGRIQCPYHGWEYST-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIP  330 (502)
Q Consensus       262 RGa~Ls~G~--v~~~~IvCPYHGW~Fdl-dG~cv~vP~~~~----~~~~L~~~pV~e~~G~IwV~lg~~~----p~~~lp  330 (502)
                      ||++|+.|.  ++++.|+||||||+||+ +|+|+.+|..+.    ...+|++|||.+++|+|||++++++    ..++++
T Consensus        87 rga~L~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~  166 (446)
T 1z01_A           87 RGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLA  166 (446)
T ss_dssp             TCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGG
T ss_pred             CcCCCCCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEEEEEECCEEEEEeCCccccccCCCChh
Confidence            999999986  46789999999999997 999999976431    2478999999999999999998642    111222


Q ss_pred             CCCC----------------------CCCceEeEEEEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738          331 CLLP----------------------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK  375 (502)
Q Consensus       331 e~~~----------------------~~~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~  375 (502)
                      +.++                      ..++.+. ....+++||||+++||++|+||+ ++|+++++.
T Consensus       167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~  231 (446)
T 1z01_A          167 HDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVH-GMHRTGFGNWRIACENGFDNAHI-LVHKDNTIV  231 (446)
T ss_dssp             GGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEE-EEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHH
T ss_pred             HhccchhhhhhhccccccccccccccCCCeEEE-eEEEEEcCCHHHHHHhccchhhh-hhhhhhhhc
Confidence            1111                      1234443 34568999999999999999999 999988753

>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}

Probab=100.00  E-value=5.4e-35  Score=305.03  Aligned_cols=163  Identities=25%  Similarity=0.492  Sum_probs=137.7

Q ss_pred             CcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCC--ccceeeeeeecceEEc
Q 010738          209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS  286 (502)
Q Consensus       209 p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~--v~~~~IvCPYHGW~Fd  286 (502)
                      ....+|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.  +.++.|+||||||+||
T Consensus        26 E~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd  104 (394)
T 3gcf_A           26 EATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYD  104 (394)
T ss_dssp             HCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEE
T ss_pred             hhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEE
Confidence            33556789999999999999999999999999999999 69999999999999999999986  4678999999999999


Q ss_pred             C-CCCcccCCCccc----ccccccccceEEeeceEEEecCCCCCCCCCCCCCC----CCCceEeEEEEEEEecccchhcc
Q 010738          287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLD  357 (502)
Q Consensus       287 l-dG~cv~vP~~~~----~~~~L~~~pV~e~~G~IwV~lg~~~p~~~lpe~~~----~~~~~v~~~~~~~v~~Nwk~~vE  357 (502)
                      + +|+|+.+|+.+.    ...+|++|||++++|+|||+++++++ +++++.++    ..++.+.+ ...+++||||+++|
T Consensus       105 l~dG~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~L~~~~~d~~~~~~~-~~~~i~~NWK~~~E  182 (394)
T 3gcf_A          105 LDDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HALSEDLPPGFLDEDTHLLG-IRRTVQSNWRLGVE  182 (394)
T ss_dssp             TTTCBEEEETTSTTCTTTTSCBCCEECEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHH
T ss_pred             CCCCceeccCCCcccccccccCceEEEEEEECCcEEEecCCCCC-CCchhhcchhhcCCceEEEe-EEEEEecCchhhHh
Confidence            8 899999987532    35789999999999999999976432 24443322    23444443 46789999999999


Q ss_pred             ccCCCCCCCcCCcccccC
Q 010738          358 NLLDLAHAPFTHTSTFAK  375 (502)
Q Consensus       358 N~lD~yH~~~vH~~tfg~  375 (502)
                      |++|+||+ ++|+++++.
T Consensus       183 N~lD~yH~-~vH~~ti~~  199 (394)
T 3gcf_A          183 NGFDTTHI-FMHRNSPWV  199 (394)
T ss_dssp             HHSCSSGG-GGGTTCHHH
T ss_pred             hccccchh-hCchhhhcc
Confidence            99999999 999999875

>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}

Probab=100.00  E-value=5.3e-34  Score=296.91  Aligned_cols=163  Identities=24%  Similarity=0.512  Sum_probs=137.7

Q ss_pred             CcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCC--ccceeeeeeecceEEc
Q 010738          209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS  286 (502)
Q Consensus       209 p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~--v~~~~IvCPYHGW~Fd  286 (502)
                      ....+|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.  ++++.|+||||||+||
T Consensus        23 E~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd  101 (389)
T 3gkq_A           23 DAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYR  101 (389)
T ss_dssp             HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEE
T ss_pred             hhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEE
Confidence            34566779999999999999999999999999999999 69999999999999999999986  4678999999999999


Q ss_pred             C-CCCcccCCCccc----ccccccccceEEeeceEEEecCCCCCCCCCCCCCC----CCCceEeEEEEEEEecccchhcc
Q 010738          287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLD  357 (502)
Q Consensus       287 l-dG~cv~vP~~~~----~~~~L~~~pV~e~~G~IwV~lg~~~p~~~lpe~~~----~~~~~v~~~~~~~v~~Nwk~~vE  357 (502)
                      + +|+|+.+|..+.    ...+|++|||++++|+|||+++++++ +++++.++    ..++.+.+ ..++++||||+++|
T Consensus       102 l~dG~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~l~~~~~~~~~~~~~-~~~~i~~NWK~~~E  179 (389)
T 3gkq_A          102 WDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP-HDLAEDVPPGFLDADLAVHG-QHRVVDANWRMGVE  179 (389)
T ss_dssp             TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHH
T ss_pred             CCCCCeecccCCcccccccccCCcEEEEEEECCeEEEecCCCCC-CCchhhcchhccCCceEEEe-EEEEEecCchhhHH
Confidence            8 899999887532    35789999999999999999975432 23443322    23455443 45789999999999


Q ss_pred             ccCCCCCCCcCCcccccC
Q 010738          358 NLLDLAHAPFTHTSTFAK  375 (502)
Q Consensus       358 N~lD~yH~~~vH~~tfg~  375 (502)
                      |++|+||+ ++|+++++.
T Consensus       180 N~lD~yH~-~vH~~si~~  196 (389)
T 3gkq_A          180 NGFDAGHV-FIHKSSILL  196 (389)
T ss_dssp             HHTCSGGG-GGGTTCHHH
T ss_pred             hcchhchh-hCccccccc
Confidence            99999999 999998865

>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*

Probab=100.00  E-value=4e-34  Score=298.39  Aligned_cols=163  Identities=24%  Similarity=0.454  Sum_probs=136.1

Q ss_pred             CcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCc--cceeeeeeecceEEc
Q 010738          209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYS  286 (502)
Q Consensus       209 p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v--~~~~IvCPYHGW~Fd  286 (502)
                      ++..+|++.|++||+++||++|+++.++++|++|+|+|+ +|+++|+.|+|||||++|+.|.+  +++.|+||||||+||
T Consensus        20 e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~   98 (392)
T 2de6_A           20 DAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYR   98 (392)
T ss_dssp             HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEE
T ss_pred             hhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe-CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEc
Confidence            345567899999999999999999999999999999995 99999999999999999999875  468999999999999


Q ss_pred             C-CCCcccCCCccc----ccccccccceEEeeceEEEecCCCCCCCCCCCCC----CCCCceEeEEEEEEEecccchhcc
Q 010738          287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLD  357 (502)
Q Consensus       287 l-dG~cv~vP~~~~----~~~~L~~~pV~e~~G~IwV~lg~~~p~~~lpe~~----~~~~~~v~~~~~~~v~~Nwk~~vE  357 (502)
                      + +|+|+.+|..+.    ...+|++|||.+++|+|||+++++++ +++++.+    ...++.+. ....+++||||+++|
T Consensus        99 ~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~-~~l~~~l~~~~~~~~~~~~-~~~~~~~~nwk~~~E  176 (392)
T 2de6_A           99 WEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDP-PPLARDTPPNFLDDDMEIL-GKNQIIKSNWRLAVE  176 (392)
T ss_dssp             TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSC-CCGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHH
T ss_pred             CCCCccccccCCccccccccCCCceEeEEEECCEEEEEeCCCCC-CChhHhccccccCCCeEEE-EEEEEEecChHhhhH
Confidence            7 999999976432    25789999999999999999976432 2333222    12345554 346789999999999


Q ss_pred             ccCCCCCCCcCCcccccC
Q 010738          358 NLLDLAHAPFTHTSTFAK  375 (502)
Q Consensus       358 N~lD~yH~~~vH~~tfg~  375 (502)
                      |++|+||+ ++|+++++.
T Consensus       177 N~~D~~H~-~~H~~~~~~  193 (392)
T 2de6_A          177 NGFDPSHI-YIHKDSILV  193 (392)
T ss_dssp             HHHCGGGG-GGGTTCHHH
T ss_pred             hcchhhhh-hhhcchhcc
Confidence            99999999 999988754

>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A

Probab=100.00  E-value=1.4e-34  Score=307.89  Aligned_cols=178  Identities=19%  Similarity=0.295  Sum_probs=150.8

Q ss_pred             cccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEE
Q 010738          177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCV  255 (502)
Q Consensus       177 ~~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~  255 (502)
                      ..+.+.|+|+++|+.|++++|.                 +.|++||+++||++ |+++.+.++|++|+|+|+.||+++|+
T Consensus        32 ~~p~~~y~d~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a~   94 (460)
T 1uli_A           32 RLDPRIYTDEALYEQELERIFG-----------------RSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVF   94 (460)
T ss_dssp             EECGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             cCCHHHcCCHHHHHHHHHHhhh-----------------cCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEE
Confidence            3455689999999999999995                 68999999999986 78899999999999999999999999


Q ss_pred             eecCCCCCCCCCCCCc-cceeeeeeecceEEcCCCCcccCCCccc-------ccccccccceEEeeceEEEecCCCCCCC
Q 010738          256 QNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPPTA  327 (502)
Q Consensus       256 ~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~FdldG~cv~vP~~~~-------~~~~L~~~pV~e~~G~IwV~lg~~~p~~  327 (502)
                      .|+|||||++|+.|.. +++.|+||||||+||+||+|+.+|..+.       ...+|++|+|++++|+|||++++++|  
T Consensus        95 ~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p--  172 (460)
T 1uli_A           95 LNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP--  172 (460)
T ss_dssp             ESCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSC--
T ss_pred             eeeCCCCCCCCccccCCCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCC--
Confidence            9999999999998765 4679999999999999999999997531       23679999999999999999987654  


Q ss_pred             CCCCCCCC-------------CCceEe-EEEEEEEecccchhcccc-CCCCCC-CcCCcccc
Q 010738          328 TIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHA-PFTHTSTF  373 (502)
Q Consensus       328 ~lpe~~~~-------------~~~~v~-~~~~~~v~~Nwk~~vEN~-lD~yH~-~~vH~~tf  373 (502)
                      ++++++++             .++.+. ....++++||||+++||+ +|+||+ .++|..++
T Consensus       173 ~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~  234 (460)
T 1uli_A          173 DLDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI  234 (460)
T ss_dssp             CHHHHHTTHHHHHHHHHCSSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred             CHHHHhcchHHHHHHHhhcCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence            44444321             234442 345678999999999999 799999 79998766

>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}

Probab=99.93  E-value=2.5e-26  Score=196.68  Aligned_cols=101  Identities=19%  Similarity=0.315  Sum_probs=94.8

Q ss_pred             cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccC
Q 010738          216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM  294 (502)
Q Consensus       216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~v  294 (502)
                      ..|++||.++||++|+++.+++.|++++|+| .+|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+..
T Consensus         2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~   80 (103)
T 2qpz_A            2 VKWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCA   80 (103)
T ss_dssp             CCEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEET
T ss_pred             CccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCC
Confidence            3699999999999999999999999999999 6999999999999999999999888899999999999997 9999999


Q ss_pred             CCcccccccccccceEEeeceEEEecC
Q 010738          295 PSTQLRNVKIKSLPCFEQEGMIWIWPG  321 (502)
Q Consensus       295 P~~~~~~~~L~~~pV~e~~G~IwV~lg  321 (502)
                      |..    .+|++|++++++|.|||+++
T Consensus        81 P~~----~~L~~~~v~~~~g~v~v~~~  103 (103)
T 2qpz_A           81 PVT----QNIKTYPVKIENLRVMIDLS  103 (103)
T ss_dssp             TCC----SCCCEECEEEETTEEEEECC
T ss_pred             CCC----CCCCEEeEEEECCEEEEEcC
Confidence            974    47999999999999999874

>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A

Probab=99.93  E-value=2.7e-26  Score=199.15  Aligned_cols=104  Identities=19%  Similarity=0.293  Sum_probs=95.9

Q ss_pred             ceEEeeecCCCCCCCceeEee-CCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCC-CCcccC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD-GKCEKM  294 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l-~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdld-G~cv~v  294 (502)
                      .|++|+.++||++|+++.+++ +|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||++ |+|+. 
T Consensus         1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~-   79 (111)
T 1vm9_A            1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-   79 (111)
T ss_dssp             CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred             CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence            499999999999999999999 999999999889999999999999999999998888999999999999985 99998 


Q ss_pred             CCcccccccccccceEEeeceEEEecCCCCC
Q 010738          295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  325 (502)
Q Consensus       295 P~~~~~~~~L~~~pV~e~~G~IwV~lg~~~p  325 (502)
                      |.    ..+|++|++++++|+|||+++++++
T Consensus        80 p~----~~~L~~~~v~~~~g~v~v~~~~~~~  106 (111)
T 1vm9_A           80 PD----DAALAEYPVEVKGDDIYVSTKGILP  106 (111)
T ss_dssp             SS----SCBCCEECEEEETTEEEECCTTCCC
T ss_pred             CC----cCCcCEEEEEEECCEEEEeccCcCC
Confidence            65    3579999999999999999976543

>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}

Probab=99.93  E-value=1.7e-26  Score=199.57  Aligned_cols=102  Identities=24%  Similarity=0.380  Sum_probs=94.8

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCee-EEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEP-WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM  294 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~-IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~v  294 (502)
                      .|++||.++||++|+++.+++.|++ ++|+|+ +|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+..
T Consensus         3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~   81 (108)
T 2i7f_A            3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF   81 (108)
T ss_dssp             CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred             ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence            5999999999999999999999999 999998 999999999999999999999888899999999999996 9999999


Q ss_pred             CCcccccccccccceEEeeceEEEecCCC
Q 010738          295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (502)
Q Consensus       295 P~~~~~~~~L~~~pV~e~~G~IwV~lg~~  323 (502)
                      |..    .+|++|++++++|.|||+++++
T Consensus        82 P~~----~~L~~~~v~~~~g~v~v~~~~~  106 (108)
T 2i7f_A           82 PCQ----IPIKTYPVTIEDGWVCIDQPKE  106 (108)
T ss_dssp             TCC----SCCCEECEEEETTEEEEECC--
T ss_pred             CCC----CCccEEeEEEECCEEEEeCCCC
Confidence            974    5799999999999999998754

>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*

Probab=99.93  E-value=4.2e-26  Score=198.42  Aligned_cols=103  Identities=17%  Similarity=0.233  Sum_probs=96.0

Q ss_pred             cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCC-CccceeeeeeecceEEcC-CCCccc
Q 010738          216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEGRIQCPYHGWEYST-DGKCEK  293 (502)
Q Consensus       216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G-~v~~~~IvCPYHGW~Fdl-dG~cv~  293 (502)
                      ..|++||.++||++|+++.+++.|++|+|+|+ +|+++|+.|+|||||++|+.| .++++.|+||||||+||+ ||+|+.
T Consensus         4 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~   82 (112)
T 1fqt_A            4 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKS   82 (112)
T ss_dssp             CCCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEE
T ss_pred             cceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeC
Confidence            36999999999999999999999999999998 999999999999999999998 778889999999999998 899999


Q ss_pred             CCCcccccccccccceEEeeceEEEecCCC
Q 010738          294 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (502)
Q Consensus       294 vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~  323 (502)
                      .|..    .+|++|++++++|+|||+++++
T Consensus        83 ~P~~----~~L~~~~v~~~~g~v~v~~~~~  108 (112)
T 1fqt_A           83 PPPC----EALKIFPIRIEDNDVLVDFEAG  108 (112)
T ss_dssp             SSCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred             CCCC----CCccEEEEEEECCEEEEEeccc
Confidence            9973    5799999999999999998654

>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*

Probab=99.93  E-value=2.7e-26  Score=201.06  Aligned_cols=104  Identities=21%  Similarity=0.463  Sum_probs=96.0

Q ss_pred             ccceEEeeecCCCCCCCceeEeeCCe-eEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcc
Q 010738          215 KNFWFPVAFSTDLKDDTMVPFDCFEE-PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCE  292 (502)
Q Consensus       215 ~~~W~~V~~~seL~~g~~~~~~l~G~-~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv  292 (502)
                      .+.|++||.++||++|+++.+++.|+ +|+|+|. +|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+
T Consensus         2 ~~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~   80 (115)
T 2de6_D            2 NQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPA   80 (115)
T ss_dssp             --CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEE
T ss_pred             CcceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEe
Confidence            36799999999999999999999999 9999998 999999999999999999999888899999999999997 99999


Q ss_pred             cCCCcccccccccccceEEeeceEEEecCCC
Q 010738          293 KMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (502)
Q Consensus       293 ~vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~  323 (502)
                      ..|..    .+|++|++++++|.|||+++++
T Consensus        81 ~~P~~----~~L~~~~v~~~~g~V~v~~~~~  107 (115)
T 2de6_D           81 SSPCT----VPLGVFEVEVKEGEVYVAGEKK  107 (115)
T ss_dssp             ETTCC----SCCCEEEEEESSSEEEEEEEEC
T ss_pred             CCCCc----CCCCEEEEEEECCEEEEecCCc
Confidence            99974    5799999999999999998654

>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*

Probab=99.93  E-value=3.5e-26  Score=196.89  Aligned_cols=101  Identities=23%  Similarity=0.348  Sum_probs=94.8

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP  295 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP  295 (502)
                      .|++||.++||++|+++.+.++|++|+|+| .+|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+..|
T Consensus         1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P   79 (106)
T 3dqy_A            1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCN-VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP   79 (106)
T ss_dssp             CCEEEEEGGGSCTTCEEEECCSSSCEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred             CcEEEEEHHHCCCCCEEEEEECCEEEEEEE-ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence            599999999999999999999999999999 5899999999999999999999888899999999999995 99999999


Q ss_pred             CcccccccccccceEEeeceEEEecCC
Q 010738          296 STQLRNVKIKSLPCFEQEGMIWIWPGD  322 (502)
Q Consensus       296 ~~~~~~~~L~~~pV~e~~G~IwV~lg~  322 (502)
                      +.    .+|++|++++++|.|||++++
T Consensus        80 ~~----~~L~~~~v~~~~g~v~v~~~~  102 (106)
T 3dqy_A           80 AC----KPIKVFPIKVEGDEVHVDLDN  102 (106)
T ss_dssp             CC----SCCCEECEEEETTEEEECGGG
T ss_pred             CC----CCccEEEEEEECCEEEEEccc
Confidence            73    579999999999999998864

>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3

Probab=99.92  E-value=2.8e-25  Score=193.31  Aligned_cols=100  Identities=19%  Similarity=0.217  Sum_probs=92.2

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCC-ceEEEeecCCCCCC-CCCCCCccc---e-eeeeeecceEEcC-CC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVNE---G-RIQCPYHGWEYST-DG  289 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG-~v~A~~N~CpHRGa-~Ls~G~v~~---~-~IvCPYHGW~Fdl-dG  289 (502)
                      .|++||.++||++|+++.+++.|++|+|+|+.+| +++|+.|+|||||+ +|+.|.+.+   . .|+||||||+||+ +|
T Consensus         6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG   85 (113)
T 2jo6_A            6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG   85 (113)
T ss_dssp             CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred             hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCc
Confidence            5999999999999999999999999999998899 69999999999999 799997652   3 8999999999998 99


Q ss_pred             CcccCCCcccccccccccceEEeeceEEEecC
Q 010738          290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG  321 (502)
Q Consensus       290 ~cv~vP~~~~~~~~L~~~pV~e~~G~IwV~lg  321 (502)
                      +|+..|.     .+|++|||++++|+|||+++
T Consensus        86 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~  112 (113)
T 2jo6_A           86 LCMEDEQ-----FSVKHYEARVKDGVVQLRGG  112 (113)
T ss_dssp             EETTTTT-----TCCCEEEEEEETTEEEEECC
T ss_pred             cCCCCCc-----ccccEEeEEEECCEEEEEcC
Confidence            9999996     47999999999999999874

>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3

Probab=99.92  E-value=6.9e-25  Score=196.27  Aligned_cols=103  Identities=17%  Similarity=0.175  Sum_probs=94.2

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCC-ceEEEeecCCCCCC-CCCCCCcc---c-eeeeeeecceEEcC-CC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---E-GRIQCPYHGWEYST-DG  289 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG-~v~A~~N~CpHRGa-~Ls~G~v~---~-~~IvCPYHGW~Fdl-dG  289 (502)
                      .|++||.++||++|+++.++++|++|+|+|+.+| +++|+.|+|||||+ +|+.|.+.   + ..|+||||||+||+ ||
T Consensus         3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG   82 (130)
T 2jza_A            3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG   82 (130)
T ss_dssp             SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred             ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCc
Confidence            5999999999999999999999999999998778 99999999999999 59999764   2 48999999999998 99


Q ss_pred             CcccCCCcccccccccccceEEeeceEEEecCCCC
Q 010738          290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEP  324 (502)
Q Consensus       290 ~cv~vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~~  324 (502)
                      +|+..|.     .+|++|+|++++|.|||++++++
T Consensus        83 ~~~~~P~-----~~L~~~~v~v~~g~V~V~~~~~~  112 (130)
T 2jza_A           83 FCLEDGA-----YSVAAYDTQVTNGNVQISIADSD  112 (130)
T ss_dssp             CBSSCCS-----SCCBCCCEEESSSEEEEECCCCC
T ss_pred             CCCCCCc-----CcceEEEEEEECCEEEEEeCCCC
Confidence            9999997     47999999999999999997654

>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3

Probab=99.92  E-value=2.1e-25  Score=196.51  Aligned_cols=103  Identities=14%  Similarity=0.016  Sum_probs=95.0

Q ss_pred             cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCC-CCCCCCccce----eeeeeecceEEcC-CC
Q 010738          216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC-PLHLGSVNEG----RIQCPYHGWEYST-DG  289 (502)
Q Consensus       216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa-~Ls~G~v~~~----~IvCPYHGW~Fdl-dG  289 (502)
                      +.|++||.++||++|+++.++++|++|+|+|+.+|+++|+.|+|||||+ +|+.|.+.++    .|+||||||+||+ +|
T Consensus         4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG   83 (119)
T 3c0d_A            4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG   83 (119)
T ss_dssp             CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred             CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence            5799999999999999999999999999999889999999999999999 8999876542    8999999999998 99


Q ss_pred             CcccCCCcccccccccccceEEeeceEEEecCCC
Q 010738          290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (502)
Q Consensus       290 ~cv~vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~  323 (502)
                      +|+..|.     .+|++|||++++|.|||++++.
T Consensus        84 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~~~  112 (119)
T 3c0d_A           84 QCLEDEA-----HCLKTWRVTVDDNQVCYLAKEL  112 (119)
T ss_dssp             BBSSCTT-----CBCCEECEEESSSEEEEECCCC
T ss_pred             cCCCCCC-----ceeeEEEEEEECCEEEEEeCCc
Confidence            9999997     4799999999999999998654

>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}

Probab=99.92  E-value=3.3e-25  Score=195.93  Aligned_cols=102  Identities=20%  Similarity=0.318  Sum_probs=94.6

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCC--CccceeeeeeecceEEcC-CCCccc
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYST-DGKCEK  293 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G--~v~~~~IvCPYHGW~Fdl-dG~cv~  293 (502)
                      .|++||.++||++|+++.+++.|++|+|+|. +|+++|+.|+|||||++|+.|  .++++.|+||||||+||+ +|+|+.
T Consensus        10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~   88 (121)
T 3gce_A           10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTA   88 (121)
T ss_dssp             CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEE
T ss_pred             CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeC
Confidence            5999999999999999999999999999996 999999999999999999999  888899999999999995 999999


Q ss_pred             CCCcccccccccccceEEeeceEEEecCCC
Q 010738          294 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (502)
Q Consensus       294 vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~  323 (502)
                      .|+.    .+|++|++++++|.|||+++..
T Consensus        89 ~P~~----~~L~~~~v~v~~g~V~v~~~~~  114 (121)
T 3gce_A           89 LPCV----LPVRAYDVVVDGTEILVAPKEA  114 (121)
T ss_dssp             TTCC----SCCCBCCEEEETTEEEECCC--
T ss_pred             CCCc----CCcceEEEEEECCEEEEEECcc
Confidence            9984    4799999999999999998654

>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}

Probab=99.91  E-value=3.1e-25  Score=204.31  Aligned_cols=109  Identities=24%  Similarity=0.397  Sum_probs=95.2

Q ss_pred             ccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccc----eeeeeeecceEEcC-CC
Q 010738          215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE----GRIQCPYHGWEYST-DG  289 (502)
Q Consensus       215 ~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~----~~IvCPYHGW~Fdl-dG  289 (502)
                      .+.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.+.+    +.|+||||||+||+ +|
T Consensus        14 ~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~tG   92 (157)
T 3d89_A           14 KYTSVCVGREEDIRKSERMTAVVHDREVVIFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATG   92 (157)
T ss_dssp             CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTTC
T ss_pred             CCceEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCCc
Confidence            57899999999999888999999999999999 59999999999999999999998653    68999999999998 99


Q ss_pred             Cccc--C-CCccc-------ccccccccceEEeeceEEEecCCCC
Q 010738          290 KCEK--M-PSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEP  324 (502)
Q Consensus       290 ~cv~--v-P~~~~-------~~~~L~~~pV~e~~G~IwV~lg~~~  324 (502)
                      +|+.  + |....       ...+|++|+|++++|+|||++++++
T Consensus        93 ~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~  137 (157)
T 3d89_A           93 EGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEP  137 (157)
T ss_dssp             EEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred             CEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCC
Confidence            9986  3 53211       1367999999999999999998754

>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}

Probab=99.90  E-value=3.5e-24  Score=189.48  Aligned_cols=101  Identities=19%  Similarity=0.206  Sum_probs=88.1

Q ss_pred             cceEEeeecCCCCCCCceeEeeC-CeeEEEEEcCCCceEEEeecCCCCCCCCCCCCcc-----ceeeeeeecceEEcC-C
Q 010738          216 NFWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-----EGRIQCPYHGWEYST-D  288 (502)
Q Consensus       216 ~~W~~V~~~seL~~g~~~~~~l~-G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~-----~~~IvCPYHGW~Fdl-d  288 (502)
                      +.|++||.++||++|..+.+.+. |++|+|||..||+++|++|+|||||++|..|...     +..|+||||||+||+ |
T Consensus         8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~t   87 (119)
T 4aiv_A            8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDD   87 (119)
T ss_dssp             EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred             cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCC
Confidence            57999999999999888888875 7999999998999999999999999999876432     236999999999995 8


Q ss_pred             CCcccCCCcccccccccccceEE-eeceEEEecC
Q 010738          289 GKCEKMPSTQLRNVKIKSLPCFE-QEGMIWIWPG  321 (502)
Q Consensus       289 G~cv~vP~~~~~~~~L~~~pV~e-~~G~IwV~lg  321 (502)
                      |+|+..|..     +|++|||++ .+|.|||...
T Consensus        88 G~~~~~p~~-----~l~~ypv~ve~dG~V~V~~~  116 (119)
T 4aiv_A           88 GSCLDDPRV-----SVPVYPARVTPEGRIQVARV  116 (119)
T ss_dssp             CBBSSCTTC-----BCCEECEEECTTSEEEEEEE
T ss_pred             CcCcCCCCC-----ccceEEEEEEeCCEEEEecC
Confidence            999999863     699999985 5899999753

>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}

Probab=99.87  E-value=8.1e-23  Score=192.29  Aligned_cols=142  Identities=15%  Similarity=0.167  Sum_probs=87.8

Q ss_pred             hHHHHHHHHhhhhhccccccccccccCC-CC--CChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCCC
Q 010738          154 KLAYMEALVNDRLLQDRHTSGTDQTCAS-PS--TSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDD  230 (502)
Q Consensus       154 ~~~~me~l~~~~~l~~~~~a~~~~~~~~-~~--ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~g  230 (502)
                      +-..|.++.||.||+++.+|++..+.+. +.  +.+.. ........            |      -+..||+++||++|
T Consensus         3 ~~~~~~~~~rr~fl~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~------------~------p~~~v~~~~dL~~g   63 (175)
T 4aay_B            3 RCQNMVDIGRRQFLRGGALAAAGATAAVFGVGAPQARA-ATAAAGVE------------Y------PANRLANISELTLN   63 (175)
T ss_dssp             ------------------------------------------CCSCC------------C------CCEEEEEGGGCBBT
T ss_pred             cchhhccccHHHHhhhhHHhhhheeEeccccccccccc-cccCcccC------------C------CcceEEEHHHCCCC
Confidence            4467889999999997666665322221 11  11111 11111111            1      23479999999999


Q ss_pred             CceeEeeCC--eeEEEEEc---------CCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCC--CCcccCCCc
Q 010738          231 TMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD--GKCEKMPST  297 (502)
Q Consensus       231 ~~~~~~l~G--~~IVV~R~---------~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdld--G~cv~vP~~  297 (502)
                      +++.+++.+  .+++|+|.         .+|+++|++|+|||+|++|+.| .+++.|+||||||+||.+  |+|+..|+.
T Consensus        64 ~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~  142 (175)
T 4aay_B           64 EPLDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFDPEKGGQQVWGQAT  142 (175)
T ss_dssp             BCEEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEECSCS
T ss_pred             CEEEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEECCCCCceEecCCCC
Confidence            999999874  58999997         5899999999999999999988 577899999999999975  999999984


Q ss_pred             ccccccccccceEE-eeceEEEe
Q 010738          298 QLRNVKIKSLPCFE-QEGMIWIW  319 (502)
Q Consensus       298 ~~~~~~L~~~pV~e-~~G~IwV~  319 (502)
                          ..|++|++++ .+|.||+.
T Consensus       143 ----~~L~~y~v~vd~dG~V~av  161 (175)
T 4aay_B          143 ----QNLPQYVLRVADNGDIFAE  161 (175)
T ss_dssp             ----SCCCBEEEEECTTSEEEEE
T ss_pred             ----CCcCEEEEEEEcCCEEEEE
Confidence                4799999999 68999974

>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1

Probab=99.84  E-value=8.1e-21  Score=169.96  Aligned_cols=98  Identities=16%  Similarity=0.274  Sum_probs=89.5

Q ss_pred             cceEEeeecCCCCCCCceeEeeCCeeEEEEEcC--------------------------CCceEEEeecCCCCCCCCCCC
Q 010738          216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLG  269 (502)
Q Consensus       216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~--------------------------dG~v~A~~N~CpHRGa~Ls~G  269 (502)
                      ..|..+ ..++|++|+.+.+.+.|.+++|+|..                          +|+++|+.|+|||+|++|+.|
T Consensus         4 ~~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g   82 (129)
T 1rie_A            4 MSKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIAN   82 (129)
T ss_dssp             CSSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEET
T ss_pred             cCceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeecccc
Confidence            356677 89999999999999999999999964                          899999999999999999999


Q ss_pred             CccceeeeeeecceEEcCCCCcccCCCcccccccccccceEE-eeceEEE
Q 010738          270 SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI  318 (502)
Q Consensus       270 ~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e-~~G~IwV  318 (502)
                      .++++.|+||||||+||.+|+|+..|..    ..|+.||+++ .+|.|||
T Consensus        83 ~~~~~~i~CP~Hg~~fd~~G~~~~~P~~----~~l~~~~v~v~~~~~v~v  128 (129)
T 1rie_A           83 AGDFGGYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV  128 (129)
T ss_dssp             CTTTEEEEETTTTEEEETTCCEEESSCC----SCCCCCCEEESSSSEEEE
T ss_pred             cCCCCEEEcCCCCCEEcCCCCEeeCCCC----CCCCceeEEEEeCCEEEE
Confidence            8888999999999999999999998874    4799999999 8999987

>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*

Probab=99.81  E-value=1e-20  Score=171.55  Aligned_cols=101  Identities=17%  Similarity=0.274  Sum_probs=88.2

Q ss_pred             cceEEeee-cCCCCCCCceeEe-eCCeeEEEEEcCCCce--EEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCc
Q 010738          216 NFWFPVAF-STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKC  291 (502)
Q Consensus       216 ~~W~~V~~-~seL~~g~~~~~~-l~G~~IVV~R~~dG~v--~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~c  291 (502)
                      ..|..++. .+||+++..+.+. +.|++++++|+.+|++  +|+.|+|||||++|+.+. .++.|+||||||+||.+|+|
T Consensus        20 g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~   98 (139)
T 1rfs_A           20 GNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGRV   98 (139)
T ss_dssp             SCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCCE
T ss_pred             CCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCCC
Confidence            46777887 8999997665554 6788888888889999  999999999999999877 46899999999999999999


Q ss_pred             ccCCCcccccccccccceEEeeceEEEecC
Q 010738          292 EKMPSTQLRNVKIKSLPCFEQEGMIWIWPG  321 (502)
Q Consensus       292 v~vP~~~~~~~~L~~~pV~e~~G~IwV~lg  321 (502)
                      +..|..    .+|++|++++++|.|||.+.
T Consensus        99 ~~~P~~----~~L~~~~v~v~~g~V~V~~~  124 (139)
T 1rfs_A           99 VRGPAP----LSLALAHCDVDDGKVVFVPW  124 (139)
T ss_dssp             EESSCC----SCCCEEEEEEETTEEEEEEC
T ss_pred             ccCCCC----CCCCEEEEEEECCEEEEEeC
Confidence            999973    57999999999999999864

>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*

Probab=99.81  E-value=4.4e-20  Score=166.02  Aligned_cols=98  Identities=17%  Similarity=0.201  Sum_probs=87.8

Q ss_pred             ceEEeeecCCCCCCCceeEeeC--CeeEEEEEcC---------CCceEEEeecCCCCCCCCCCCCccceeeeeeecceEE
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCF--EEPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY  285 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~--G~~IVV~R~~---------dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~F  285 (502)
                      -|+.||.++||++|+++.+.+.  +.+++|+|..         +|+++|+.|+|||+|++|+.+ .+++.|+||||||+|
T Consensus         7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~~~~i~CP~Hg~~F   85 (133)
T 1g8k_B            7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SSSKTFSCPCHFTEF   85 (133)
T ss_dssp             CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEE
T ss_pred             CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cCCCEEECCCCCCEE
Confidence            4899999999999999999885  8999999975         899999999999999999974 456899999999999


Q ss_pred             cC--CCCcccCCCcccccccccccceEEe--eceEEEe
Q 010738          286 ST--DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW  319 (502)
Q Consensus       286 dl--dG~cv~vP~~~~~~~~L~~~pV~e~--~G~IwV~  319 (502)
                      |.  +|+|+..|..    ..|++|++++.  +|.|||.
T Consensus        86 d~~~~G~~~~gP~~----~~L~~~~v~v~~~g~~V~v~  119 (133)
T 1g8k_B           86 DAEKAGQMICGEAT----ADLPRVLLRYDAASDALTAV  119 (133)
T ss_dssp             EGGGTTEEEESSCS----SCCCEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCEEcCCCC----CCCCEEEEEEECCCCEEEEE
Confidence            98  8999999874    47999999998  6789995

>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}

Probab=99.63  E-value=3.7e-20  Score=167.04  Aligned_cols=97  Identities=16%  Similarity=0.303  Sum_probs=81.2

Q ss_pred             eecCCCCCCCceeEe-eCCeeEEEEEcCCCc--eEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCcc
Q 010738          222 AFSTDLKDDTMVPFD-CFEEPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ  298 (502)
Q Consensus       222 ~~~seL~~g~~~~~~-l~G~~IVV~R~~dG~--v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~  298 (502)
                      ...+++++|+...+. +.|.+.+++|..+|+  ++|+.|+|||||++|+.|. .++.|+||||||+||.+|+|+..|+. 
T Consensus        21 ~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~~~P~~-   98 (133)
T 3azc_A           21 EYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVVRGPAP-   98 (133)
Confidence            456678888766665 345556666667898  9999999999999999887 67899999999999999999999974 


Q ss_pred             cccccccccceEE-eeceEEEecCCC
Q 010738          299 LRNVKIKSLPCFE-QEGMIWIWPGDE  323 (502)
Q Consensus       299 ~~~~~L~~~pV~e-~~G~IwV~lg~~  323 (502)
                         .+|++|||++ ++|.|||.++.+
T Consensus        99 ---~~L~~ypv~v~~~g~V~V~~~~e  121 (133)
T 3azc_A           99 ---LSLALVKATVTEDDKLVFTPWTE  121 (133)
Confidence               4799999999 999999987653

>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*

Probab=99.74  E-value=8e-18  Score=159.52  Aligned_cols=99  Identities=17%  Similarity=0.157  Sum_probs=85.4

Q ss_pred             ccceEEeeecCCCCCCCceeEeeCCeeEEEEEcC--------------------------CCceEEEeecCCCCCCCCCC
Q 010738          215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHL  268 (502)
Q Consensus       215 ~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~--------------------------dG~v~A~~N~CpHRGa~Ls~  268 (502)
                      ...|..| ..++|++|+.+.+.+.|.+++|+|..                          +|+++|+.|+|||+||.+..
T Consensus        60 a~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~  138 (185)
T 3cx5_E           60 AMAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIG  138 (185)
T ss_dssp             CCCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEE
T ss_pred             ccCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceecc
Confidence            3579999 69999999999999999999999964                          69999999999999996443


Q ss_pred             CCccceeeeeeecceEEcCCCCcccCCCcccccccccccceEEeeceEEE
Q 010738          269 GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI  318 (502)
Q Consensus       269 G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~~G~IwV  318 (502)
                      ..++.+.|.||||||+||.+|+++..|..    ..|+.+|+...+|.|||
T Consensus       139 ~~~~~~~~~CPcHGs~FD~~G~v~~gPa~----~~L~v~p~~v~~~~I~v  184 (185)
T 3cx5_E          139 EAGDFGGWFCPCHGSHYDISGRIRKGPAP----LNLEIPAYEFDGDKVIV  184 (185)
T ss_dssp             EETTTTEEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTEEEE
T ss_pred             CCCCCCEEEcCCCCCEECCCCCEecCCCC----CCcceEEEEEECCEEEE
Confidence            33355789999999999999999999874    46888888888999987

>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*

Probab=99.72  E-value=2e-17  Score=156.91  Aligned_cols=96  Identities=22%  Similarity=0.265  Sum_probs=83.7

Q ss_pred             eEEeeecCCCCCCCceeEeeCCeeEEEEEc----------------------------------------CCCceEEEee
Q 010738          218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQN  257 (502)
Q Consensus       218 W~~V~~~seL~~g~~~~~~l~G~~IVV~R~----------------------------------------~dG~v~A~~N  257 (502)
                      |..| ..++|++|+.+.+++.|.+|+|+|.                                        .+|+++|+.|
T Consensus        49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~  127 (187)
T 2qjy_C           49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG  127 (187)
T ss_dssp             CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred             cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence            5554 8999999999999999999999992                                        2899999999


Q ss_pred             cCCCCCCCCCCC-CccceeeeeeecceEEcCCCCcccCCCcccccccccccceEEe-eceEEE
Q 010738          258 TCAHRACPLHLG-SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI  318 (502)
Q Consensus       258 ~CpHRGa~Ls~G-~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~-~G~IwV  318 (502)
                      +|||+|++|+.+ .++.+.|.||||||+||.+|+++..|..    ..|+.||+++. +|.|+|
T Consensus       128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~----~~L~~~~~~v~~d~~i~i  186 (187)
T 2qjy_C          128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL  186 (187)
T ss_dssp             CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEEEETTEEEE
T ss_pred             ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC----CCCceEEEEEEeCCEEEE
Confidence            999999999983 4444789999999999999999998874    47999999986 688987

>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...

Probab=99.72  E-value=1.4e-17  Score=159.28  Aligned_cols=94  Identities=17%  Similarity=0.293  Sum_probs=86.1

Q ss_pred             eeecCCCCCCCceeEeeCCeeEEEEEcC--------------------------CCceEEEeecCCCCCCCCCCCCccce
Q 010738          221 VAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGSVNEG  274 (502)
Q Consensus       221 V~~~seL~~g~~~~~~l~G~~IVV~R~~--------------------------dG~v~A~~N~CpHRGa~Ls~G~v~~~  274 (502)
                      .+..++|++|+.+.+.+.|.+++|+|..                          +|+++|+.|+|||+||+|+.|.++.+
T Consensus        75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~~  154 (196)
T 1pp9_E           75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFG  154 (196)
T ss_dssp             EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTTS
T ss_pred             EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCCC
Confidence            5789999999999999999999999862                          89999999999999999999887778


Q ss_pred             eeeeeecceEEcCCCCcccCCCcccccccccccceEE-eeceEEE
Q 010738          275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI  318 (502)
Q Consensus       275 ~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e-~~G~IwV  318 (502)
                      .|.||||||+||.+|+++..|..    ..|..+|+++ .+|.|+|
T Consensus       155 ~~~CP~HGs~FD~~G~v~~gPa~----~~L~~~p~~v~~d~~I~v  195 (196)
T 1pp9_E          155 GYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV  195 (196)
T ss_dssp             SEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTTEEEE
T ss_pred             EEEeCCCCCEECCCCCCccCCCC----CCCcceeEEEEECCEEEE
Confidence            99999999999999999999874    4789999998 7899987

>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A

Probab=99.71  E-value=2.2e-17  Score=150.19  Aligned_cols=93  Identities=19%  Similarity=0.233  Sum_probs=83.4

Q ss_pred             eecCCCCCCCceeEeeCCeeEEEEEcC----------------------------------------CCceEEEeecCCC
Q 010738          222 AFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------------DGIPGCVQNTCAH  261 (502)
Q Consensus       222 ~~~seL~~g~~~~~~l~G~~IVV~R~~----------------------------------------dG~v~A~~N~CpH  261 (502)
                      ...++|++|+.+++...|.|++|.|..                                        +|+++|+.|+|||
T Consensus         6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H   85 (141)
T 2nwf_A            6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH   85 (141)
T ss_dssp             EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred             EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence            467899999999999999999999851                                        7899999999999


Q ss_pred             CCCCCCC-CCccceeeeeeecceEEcCCCCcccCCCcccccccccccceEE-eeceEEE
Q 010738          262 RACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI  318 (502)
Q Consensus       262 RGa~Ls~-G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e-~~G~IwV  318 (502)
                      +|++|+. +.++++.|.||||||+||.+|+++..|+.    ..|..||+++ .+|.|+|
T Consensus        86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~----~~L~~~pv~v~~d~~i~v  140 (141)
T 2nwf_A           86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL  140 (141)
T ss_dssp             TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEESSSSEEEE
T ss_pred             CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCC----CCCCceeEEEEECCEEEE
Confidence            9999998 66666899999999999999999999874    4789999998 7999987

>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A

Probab=99.70  E-value=1.7e-17  Score=154.63  Aligned_cols=99  Identities=20%  Similarity=0.280  Sum_probs=80.6

Q ss_pred             eecCCCCCCCceeEeeCCee-------------EEEEEc-------------CCCceEEEeecCCCCCCCCCCCCcccee
Q 010738          222 AFSTDLKDDTMVPFDCFEEP-------------WVIFRG-------------KDGIPGCVQNTCAHRACPLHLGSVNEGR  275 (502)
Q Consensus       222 ~~~seL~~g~~~~~~l~G~~-------------IVV~R~-------------~dG~v~A~~N~CpHRGa~Ls~G~v~~~~  275 (502)
                      ...++|++|+.+.+.+-|.+             +++.|-             .+| ++|+.|+|||+|++|+.|.++++.
T Consensus        25 v~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-v~A~~~~CpH~G~~L~~g~~~~~~  103 (165)
T 1nyk_A           25 IRLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG-VVAYSAVCTHLGCIVSQWVADEEA  103 (165)
T ss_dssp             CBGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTT-EEEEECBCTTTCCBCCEEEGGGTE
T ss_pred             ecHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCC-EEEEEeecCCCCeEcccccCCCCE
Confidence            36778888877777653333             555564             355 999999999999999988888889


Q ss_pred             eeeeecceEEcCC-CC-cccCCCcccccccccccceEEeeceEEEecCCCCC
Q 010738          276 IQCPYHGWEYSTD-GK-CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  325 (502)
Q Consensus       276 IvCPYHGW~Fdld-G~-cv~vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~~p  325 (502)
                      |+||||||+||.+ |. |+..|+.    ..|+.|++++++|.|||+++...+
T Consensus       104 i~CP~Hgs~Fd~~tG~~~~~gPa~----~~L~~~~v~v~~g~V~v~~~~~~~  151 (165)
T 1nyk_A          104 ALCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGEFLGP  151 (165)
T ss_dssp             EECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSSCSSC
T ss_pred             EECCCCCCEEcCCCCCeeecCCCC----CCCcEEEEEEECCEEEEEecCccc
Confidence            9999999999984 86 9999873    579999999999999999876654

>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*

Probab=99.67  E-value=1.1e-17  Score=157.40  Aligned_cols=92  Identities=18%  Similarity=0.325  Sum_probs=81.6

Q ss_pred             cCCCCCCCceeEe-eCCeeEEEEEcCCCce--EEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCcccc
Q 010738          224 STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR  300 (502)
Q Consensus       224 ~seL~~g~~~~~~-l~G~~IVV~R~~dG~v--~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~  300 (502)
                      .++|++|+...+. +.|++++++|+.+|++  +|+.|+|||+||+|+.+. .++.|.||||||+||.+|+|+..|..   
T Consensus        70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa~---  145 (179)
T 1vf5_D           70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPAP---  145 (179)
T ss_dssp             HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSCC---
T ss_pred             ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCCC---
Confidence            4678888777776 7789999999899998  999999999999999876 46789999999999999999999873   


Q ss_pred             cccccccceEEeeceEEEec
Q 010738          301 NVKIKSLPCFEQEGMIWIWP  320 (502)
Q Consensus       301 ~~~L~~~pV~e~~G~IwV~l  320 (502)
                       ..|+.|++++++|.|||.+
T Consensus       146 -~~L~~~~v~v~~g~v~v~~  164 (179)
T 1vf5_D          146 -LSLALCHATVQDDNIVLTP  164 (179)
T ss_dssp             -SCCBCCCCCCSSSSCCCCC
T ss_pred             -CCCCeEEEEEECCEEEEEe
Confidence             5799999999999999965

>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1

Probab=99.56  E-value=2e-16  Score=152.06  Aligned_cols=84  Identities=18%  Similarity=0.280  Sum_probs=72.0

Q ss_pred             eeEeeCCeeEEEEEcC------------CCceEEEeecCCCCCCCCCCCC-----------ccceeeeeeecceEEcCC-
Q 010738          233 VPFDCFEEPWVIFRGK------------DGIPGCVQNTCAHRACPLHLGS-----------VNEGRIQCPYHGWEYSTD-  288 (502)
Q Consensus       233 ~~~~l~G~~IVV~R~~------------dG~v~A~~N~CpHRGa~Ls~G~-----------v~~~~IvCPYHGW~Fdld-  288 (502)
                      +.+++.+.+++++|..            +|+++|+.|+|||+|++|+.|.           ..++.|.||||||+||.+ 
T Consensus        56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t  135 (204)
T 1jm1_A           56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD  135 (204)
T ss_dssp             CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred             ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence            5677888888888876            7999999999999999999874           256789999999999986 


Q ss_pred             -CCcccCCCcccccccccccceEEe--eceEEEec
Q 010738          289 -GKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIWP  320 (502)
Q Consensus       289 -G~cv~vP~~~~~~~~L~~~pV~e~--~G~IwV~l  320 (502)
                       |+|+..|+.    ..|+.|++.+.  +|.||+..
T Consensus       136 GG~v~~gPa~----~~L~~~~v~v~~~~g~v~v~g  166 (204)
T 1jm1_A          136 GGVVVSGPAP----RPLPIVILDYDSSTGDIYAVG  166 (204)
T ss_dssp             TSEEEESSCC----SCCCBEEEEECTTTCEEEEEE
T ss_pred             CCeEecCCCC----CCCCeEeeEEEecCCEEEEEe
Confidence             799998874    46888888876  89999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	502
d1z01a1	148	b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-m	1e-25
d2de6a1	142	b.33.1.2 (A:1-142) Terminal oxygenase component of	3e-25
d1vm9a_	109	b.33.1.1 (A:) Toluene-4-monooxygenase system prote	3e-18
d1fqta_	109	b.33.1.1 (A:) Rieske-type ferredoxin associated wi	3e-18
d1rfsa_	127	b.33.1.1 (A:) ISP subunit from chloroplast cytochr	4e-16
d2jzaa1	122	b.33.1.3 (A:1-122) NADH-nitrite reductase small su	5e-14
d2jo6a1	108	b.33.1.3 (A:1-108) NADH-nitrite reductase small su	7e-13
d2e74d1	134	b.33.1.1 (D:46-179) ISP subunit from the cytochrom	2e-12
d3c0da1	108	b.33.1.3 (A:4-111) NADH-nitrite reductase small su	8e-12
d1ulia1	154	b.33.1.2 (A:17-170) Biphenyl dioxygenase large sub	3e-11
d2bmoa1	150	b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha	3e-09
d1g8kb_	133	b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alc	5e-09
d1nyka_	156	b.33.1.1 (A:) Soluble Rieske protein {Thermus ther	1e-08
d2b1xa1	162	b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alp	8e-08
d1jm1a_	202	b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon S	0.002
d1riea_	127	b.33.1.1 (A:) ISP subunit of the mitochondrial cyt	0.003

>d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 148

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
species: Pseudomonas putida [TaxId: 303]

 Score =  100 bits (249), Expect = 1e-25
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 12/134 (8%)

Query: 208 QPY---NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 264
           QPY        N W+P  F+ +L++D +        P V+ R  +G    +++ C HR  
Sbjct: 16  QPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGV 74

Query: 265 PLHLG--SVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-----LRNVKIKSLPCFEQEGMIW 317
            L        +  I C YHG+ +  +               +    + + P  E  GMI+
Sbjct: 75  RLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIF 134

Query: 318 IWPG-DEPPTATIP 330
           ++   D+ P   +P
Sbjct: 135 VFVREDDFPDEDVP 148

>d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Length = 142

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Terminal oxygenase component of carbazole CarAa
species: Janthinobacterium sp. j3 [TaxId: 213804]

 Score = 99.0 bits (246), Expect = 3e-25
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 11/135 (8%)

Query: 201 LNVSGPVQPY---NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQN 257
           L       PY       +N W+PV FS ++ +          E  ++ R  DG   C+++
Sbjct: 9   LKRVKGWAPYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKD 67

Query: 258 TCAHRACPLHLG--SVNEGRIQCPYHGWEYS-TDGKCEKMP----STQLRNVKIKSLPCF 310
            C HR   L +      +  I C YH W Y   DG    +     S Q+   K+K+ P  
Sbjct: 68  RCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQ 127

Query: 311 EQEGMIWIWPGDEPP 325
           E +G ++I+ GD  P
Sbjct: 128 EAKGCVFIYLGDGDP 142

>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Length = 109

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Toluene-4-monooxygenase system protein C, TmoC
species: Pseudomonas mendocina [TaxId: 300]

 Score = 78.1 bits (192), Expect = 3e-18
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFE-EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 276
           +  +    D+    M  F+  +    +I   ++      Q  C H+   L  GS   G I
Sbjct: 2   FEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVI 61

Query: 277 QCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325
            C  H W ++   G           +  +   P   +   I++      P
Sbjct: 62  TCRAHLWTFNDGTGHGINPD-----DAALAEYPVEVKGDDIYVSTKGILP 106

>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Length = 109

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Rieske-type ferredoxin associated with biphenyl dioxygenase
species: Burkholderia cepacia [TaxId: 292]

 Score = 77.8 bits (191), Expect = 3e-18
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           +  V    D+ +   +  +       IF   DG     Q+ C H    L  G   EG + 
Sbjct: 3   FTRVCDRRDVPEGEALKVESGGTSVAIFN-VDGELFATQDRCTHGDWSLSDGGYLEGDVV 61

Query: 278 C-PYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIW--PGDEPP 325
               H  ++    GK +  P  +     +K  P   ++  + +    G   P
Sbjct: 62  ECSLHMGKFCVRTGKVKSPPPCE----ALKIFPIRIEDNDVLVDFEAGYLAP 109

>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 127

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from chloroplast cytochrome bf complex
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 72.8 bits (178), Expect = 4e-16
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 243 VIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNV 302
           V+   K      +   C H  C +   +  E +  CP HG +Y+  G+  + P+      
Sbjct: 39  VVESDKTLATFGINAVCTHLGCVVPFNAA-ENKFICPCHGSQYNNQGRVVRGPAPL---- 93

Query: 303 KIKSLPCFEQEGMIWIWPGDEPPTAT 328
            +    C   +G +   P  E    T
Sbjct: 94  SLALAHCDVDDGKVVFVPWTETDFRT 119

>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} Length = 122

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Erwinia carotovora [TaxId: 554]

 Score = 66.6 bits (161), Expect = 5e-14
 Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 10/114 (8%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLH-----LGSV 271
           W  V    D+   T V     ++   +FR + D     + N        +          
Sbjct: 4   WTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQ 63

Query: 272 NEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325
           ++  +  P     +                  + +       G + I   D   
Sbjct: 64  DDLWVASPLKKQHFRLYDGFCLED----GAYSVAAYDTQVTNGNVQISIADSDV 113

>d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Length = 108

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Escherichia coli [TaxId: 562]

 Score = 62.5 bits (151), Expect = 7e-13
 Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 12/108 (11%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFR-GKDGIPGCVQNTCAHRACPL-----HLGSV 271
           W  +    D+  +T V     +E   IFR         + N        +          
Sbjct: 4   WKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQ 63

Query: 272 NEGRIQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 318
            E  +  P     +  +DG C +          +K      ++G++ +
Sbjct: 64  GELWVASPLKKQRFRLSDGLCMEDEQ-----FSVKHYEARVKDGVVQL 106

>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Length = 134

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from the cytochrome b6f complex, soluble domain
species: Mastigocladus laminosus [TaxId: 83541]

 Score = 62.1 bits (150), Expect = 2e-12
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 229 DDTMVPFDCFEEPWVI-FRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST 287
           D  +V     +  +++    +      +   C H  C +   +  E + +CP HG +Y  
Sbjct: 32  DRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDE 90

Query: 288 DGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTAT 328
            GK  + P+       +       Q+  I + P  E    T
Sbjct: 91  TGKVIRGPAPL----SLALCHATVQDDNIVLTPWTETDFRT 127

>d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} Length = 108

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 59.8 bits (144), Expect = 8e-12
 Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 11/111 (9%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-----N 272
              +    DL            E   +F   D     VQ+        +    +      
Sbjct: 3   KVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDING 62

Query: 273 EGRIQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGD 322
           E  +  P +   +S   G+C +  +       +K+      +  +     +
Sbjct: 63  EMCVASPLYKQHFSLKSGQCLEDEA-----HCLKTWRVTVDDNQVCYLAKE 108

>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Length = 154

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

 Score = 59.4 bits (143), Expect = 3e-11
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 9/118 (7%)

Query: 215 KNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH-LGSVN 272
              W  +   T +      +     E+P ++ R K+G      N C HR   +      N
Sbjct: 37  GRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGN 96

Query: 273 EGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDE 323
                C YHGW Y T G    +P  +         +           +G+I+     +
Sbjct: 97  AKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDAD 154

>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Length = 150

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha
species: Comamonas sp. JS765 [TaxId: 58226]

 Score = 53.7 bits (128), Expect = 3e-09
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 11/116 (9%)

Query: 215 KNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
              W  +   + +      V      +  ++ R  DG      N C HR   L       
Sbjct: 32  ARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGN 91

Query: 274 G-RIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLPCFEQ-EGMIWIW 319
                C YHGW Y ++G+ + +P  +         + + +K +P  E   G I+  
Sbjct: 92  AKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGC 147

>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Length = 133

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Arsenite oxidase Rieske subunit
species: Alcaligenes faecalis [TaxId: 511]

 Score = 52.3 bits (125), Expect = 5e-09
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 21/123 (17%)

Query: 220 PVAFSTDLKDDTMVPF-------DCF----EEPWVIFRGKDGIPGCVQNTCAHRACPLHL 268
            V+ + +L  +  V F        C       P     G D         C H  CP   
Sbjct: 10  AVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSY 69

Query: 269 GSVNEGRIQCPYHGWEYS--TDGKCEKMPSTQ-LRNVKIK------SLPCFEQEGMIWIW 319
              +     CP H  E+     G+     +T  L  V ++      +L     +G+I+  
Sbjct: 70  D-SSSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDALTAVGVDGLIYGR 128

Query: 320 PGD 322
             +
Sbjct: 129 QAN 131

>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Length = 156

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Soluble Rieske protein
species: Thermus thermophilus [TaxId: 274]

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 8/90 (8%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY--STDGKCEKMPS 296
             P V     +G+       C H  C +     +E    CP HG  Y      +    P 
Sbjct: 68  LAPEVAQHAAEGVV-AYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPP 126

Query: 297 TQLRNVKIKSLPCFEQEGMIWIW-PGDEPP 325
            +     +  LP   ++G++        P 
Sbjct: 127 PR----PVPQLPVRVEDGVLVAAGEFLGPV 152

>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Length = 162

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Naphthalene 1,2-dioxygenase alpha subunit, N-domain
species: Rhodococcus sp. ncimb12038 [TaxId: 92694]

 Score = 49.9 bits (118), Expect = 8e-08
 Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 215 KNFWFPVAFSTDLKDDT-MVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
            + W  +A  +++ +    V     E+ +++ R + G      N C HR   +    +  
Sbjct: 43  GHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGN 102

Query: 274 GR-IQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLPCFEQ-EGMIWIW 319
               +CPYHGW YS  G    +P+ +          +  ++ +P     +G+I+  
Sbjct: 103 TSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGS 158

>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 202

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Rieske protein II (SoxF)
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 13/73 (17%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-----------EGRIQCPYHGWEY-- 285
           +   +   G +G      + C H  C L    +               + CP HG  Y  
Sbjct: 72  QIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYAL 131

Query: 286 STDGKCEKMPSTQ 298
              G     P+ +
Sbjct: 132 KDGGVVVSGPAPR 144

>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} Length = 127

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query: 254 CVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298
            +   C H  C     + + G   CP HG  Y   G+  K P+  
Sbjct: 65  ILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPL 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	502
d1ulia1	154	Biphenyl dioxygenase large subunit BphA1, N-termin	99.97
d2bmoa1	150	Nitrobenzene dioxygenase alpha subunit, NBDO-alpha	99.97
d2b1xa1	162	Naphthalene 1,2-dioxygenase alpha subunit, N-domai	99.97
d2de6a1	142	Terminal oxygenase component of carbazole CarAa {J	99.96
d1z01a1	148	2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen	99.95
d1vm9a_	109	Toluene-4-monooxygenase system protein C, TmoC {Ps	99.91
d2jzaa1	122	NADH-nitrite reductase small subunit NirD {Erwinia	99.91
d2jo6a1	108	NADH-nitrite reductase small subunit NirD {Escheri	99.89
d1fqta_	109	Rieske-type ferredoxin associated with biphenyl di	99.88
d3c0da1	108	NADH-nitrite reductase small subunit NirD {Vibrio	99.88
d1rfsa_	127	ISP subunit from chloroplast cytochrome bf complex	99.71
d2e74d1	134	ISP subunit from the cytochrome b6f complex, solub	99.66
d1g8kb_	133	Arsenite oxidase Rieske subunit {Alcaligenes faeca	99.64
d1nyka_	156	Soluble Rieske protein {Thermus thermophilus [TaxI	99.49
d3cx5e1	129	ISP subunit of the mitochondrial cytochrome bc1-co	99.23
d1riea_	127	ISP subunit of the mitochondrial cytochrome bc1-co	99.15
d1jm1a_	202	Rieske protein II (SoxF) {Archaeon Sulfolobus acid	98.78
d1z01a2	279	2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen	97.91
d2bmoa2	287	Nitrobenzene dioxygenase alpha subunit, NBDO-alpha	96.91
d2b1xa2	279	Naphthalene 1,2-dioxygenase alpha subunit, C-domai	96.89
d1ulia2	281	Biphenyl dioxygenase large subunit BphA1, C-termin	96.53
d1wqla2	279	Large subunit of cumene dioxygenase cumA1 {Pseudom	95.84
d2de6a2	242	Terminal oxygenase component of carbazole CarAa {J	87.24

>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

Probab=99.97  E-value=5.2e-32  Score=247.61  Aligned_cols=129  Identities=19%  Similarity=0.299  Sum_probs=116.7

Q ss_pred             ccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEe
Q 010738          178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQ  256 (502)
Q Consensus       178 ~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~  256 (502)
                      ..+..|+|+++|+.|+++||+                 +.|++||+++||++ |+++++++++++|+|+|+++|+++||.
T Consensus        17 l~~~~Y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~i~~~~ilv~R~~~g~i~af~   79 (154)
T d1ulia1          17 LDPRIYTDEALYEQELERIFG-----------------RSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFL   79 (154)
T ss_dssp             ECGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             CCHHHcCCHHHHHHHHHHHhc-----------------cCCEEEEEhhhCCCCcceeeeecCCcceeEEeecccceeeee
Confidence            556789999999999999996                 79999999999987 899999999999999999999999999


Q ss_pred             ecCCCCCCCCCCCC-ccceeeeeeecceEEcCCCCcccCCCccc-------ccccccccceEEeeceEEEecCCC
Q 010738          257 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDE  323 (502)
Q Consensus       257 N~CpHRGa~Ls~G~-v~~~~IvCPYHGW~FdldG~cv~vP~~~~-------~~~~L~~~pV~e~~G~IwV~lg~~  323 (502)
                      |+|||||++|..+. ++++.|+||||||+||++|+|+.+|..+.       ...+|++++|.+++|+|||+++++
T Consensus        80 N~C~HRG~~L~~~~~g~~~~l~CpYHgW~f~~~G~~~~iP~~~~~~~~~~~~~~~L~~~~v~~~~G~Ifv~~d~D  154 (154)
T d1ulia1          80 NQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDAD  154 (154)
T ss_dssp             SCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTT
T ss_pred             cccccCCceeeecCCCccceEEeeeceeEEecCCccccCCcccccCCCCChHHCCCeEEeEEEECCEEEEEeCCC
Confidence            99999999999754 56788999999999999999999997432       246789999999999999999753

>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha
species: Comamonas sp. JS765 [TaxId: 58226]

Probab=99.97  E-value=1.9e-31  Score=243.08  Aligned_cols=124  Identities=19%  Similarity=0.333  Sum_probs=113.1

Q ss_pred             CCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCC
Q 010738          182 PSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCA  260 (502)
Q Consensus       182 ~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~Cp  260 (502)
                      .++|+++|+.|+++||.                 +.|++||+++|||+ |+++++++++++++|+|++||+++||.|+||
T Consensus        16 ~y~D~~~f~~E~~~if~-----------------~~W~~v~~~~elp~~Gd~~~~~i~~~~~vv~R~~dg~i~af~N~C~   78 (150)
T d2bmoa1          16 IHGDKELFQHELKTIFA-----------------RNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCR   78 (150)
T ss_dssp             GGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESBCT
T ss_pred             ccCCHHHHHHHHHHHHH-----------------cCCeEeehHHHcCCCcceeeeeecCceeEEEecCCCchhhhhhhcc
Confidence            78999999999999996                 79999999999986 8999999999999999999999999999999


Q ss_pred             CCCCCCCCCCc-cceeeeeeecceEEcCCCCcccCCCccc--------ccccccccc-eEEeeceEEEecCC
Q 010738          261 HRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLP-CFEQEGMIWIWPGD  322 (502)
Q Consensus       261 HRGa~Ls~G~v-~~~~IvCPYHGW~FdldG~cv~vP~~~~--------~~~~L~~~p-V~e~~G~IwV~lg~  322 (502)
                      |||++|+.|.. +.+.|+||||||+||.+|+|+++|..+.        ...+|.++| |++++|+|||+++.
T Consensus        79 HRG~~L~~~~~g~~~~i~CpYHgW~yd~~G~l~~~P~~~~~~~~~~~~~~~~L~~~~~ve~~~G~Ifv~lda  150 (150)
T d2bmoa1          79 HRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDA  150 (150)
T ss_dssp             TTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCT
T ss_pred             cccccccccccccccceEecccceeeccccchhcCCCccccCCCCCChhhCCCcccceEEEECCEEEEecCC
Confidence            99999999864 6789999999999999999999997431        247789997 77789999999863

>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Naphthalene 1,2-dioxygenase alpha subunit, N-domain
species: Rhodococcus sp. ncimb12038 [TaxId: 92694]

Probab=99.97  E-value=4.1e-31  Score=243.57  Aligned_cols=129  Identities=20%  Similarity=0.399  Sum_probs=115.0

Q ss_pred             cccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEE
Q 010738          177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCV  255 (502)
Q Consensus       177 ~~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~  255 (502)
                      ..++..|+|+++|+.|.+++|.                 +.|++||+++||++ |+++++.++|++++|+|+.||+++||
T Consensus        22 ~lP~~~Y~d~~~f~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~~vv~R~~dG~i~a~   84 (162)
T d2b1xa1          22 TVPAAIINDPEVHDVERERIFG-----------------HAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGH   84 (162)
T ss_dssp             EEEGGGSSCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             cCCHHHcCCHHHHHHHHHHHHc-----------------CCCEEEEEHHHcCCccceeeEeecCCceEEEecCCcceEEe
Confidence            3456689999999999999996                 78999999999985 89999999999999999999999999


Q ss_pred             eecCCCCCCCCCCCC-ccceeeeeeecceEEcCCCCcccCCCccc--------ccccccccc-eEEeeceEEEecCC
Q 010738          256 QNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLP-CFEQEGMIWIWPGD  322 (502)
Q Consensus       256 ~N~CpHRGa~Ls~G~-v~~~~IvCPYHGW~FdldG~cv~vP~~~~--------~~~~L~~~p-V~e~~G~IwV~lg~  322 (502)
                      .|+|||||++|+.+. +.++.|+||||||+||.+|+|+++|..+.        .+.+|++++ |++++|+|||++++
T Consensus        85 ~N~C~HRG~~l~~~~~g~~~~i~CpYHgW~yd~~G~l~~~P~~~~~~~~~~~~~~~~L~~~~~v~~~~GlIfv~ldP  161 (162)
T d2b1xa1          85 LNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDP  161 (162)
T ss_dssp             ESSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCT
T ss_pred             ecccccCcccccccccCccccccCCCceeEEcCCCCeEECCCcccCCCCCCChhhcCCeeeeeEEEECCEEEEEcCC
Confidence            999999999999875 56778999999999999999999997532        246788886 78889999999964

>d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Terminal oxygenase component of carbazole CarAa
species: Janthinobacterium sp. j3 [TaxId: 213804]

Probab=99.96  E-value=9.6e-30  Score=228.75  Aligned_cols=113  Identities=27%  Similarity=0.582  Sum_probs=100.4

Q ss_pred             ccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCC--ccceeeeeeecceEEcC-
Q 010738          211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-  287 (502)
Q Consensus       211 ~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~--v~~~~IvCPYHGW~Fdl-  287 (502)
                      ...|++.|++||+++||++|+++.++++|++|+|+|+ +|+++|+.|+|||||++|+.|.  ..++.|+||||||+||+ 
T Consensus        22 ~~~f~~~W~~v~~~~el~~g~~~~~~i~g~~ivv~r~-~g~v~a~~n~CpHrga~L~~g~~~~~~~~i~Cp~Hgw~fdl~  100 (142)
T d2de6a1          22 KLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWE  100 (142)
T ss_dssp             TTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETT
T ss_pred             hcCCcccCEEEEEHHHCCCCCeEEEEECCEEEEEEEc-CCEEEEEeCccCCCCccCCccccccccCEEeccceeeEEecc
Confidence            4567899999999999999999999999999999996 8999999999999999999874  34668999999999997 


Q ss_pred             CCCcccCCCccc----ccccccccceEEeeceEEEecCCCC
Q 010738          288 DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP  324 (502)
Q Consensus       288 dG~cv~vP~~~~----~~~~L~~~pV~e~~G~IwV~lg~~~  324 (502)
                      +|+|+.+|..+.    .+.+|++|||++++|+|||++++.+
T Consensus       101 ~G~~~~~p~~~~~~~~~~~~l~~y~v~e~~G~I~v~l~d~~  141 (142)
T d2de6a1         101 DGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGD  141 (142)
T ss_dssp             TCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSS
T ss_pred             CCceEecCCCcccCCccccCCCEEeEEEECCEEEEEeCCCC
Confidence            799999887542    2467999999999999999998654

>d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
species: Pseudomonas putida [TaxId: 303]

Probab=99.95  E-value=5.5e-29  Score=225.23  Aligned_cols=112  Identities=23%  Similarity=0.507  Sum_probs=98.7

Q ss_pred             cccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCC--ccceeeeeeecceEEcC-C
Q 010738          212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-D  288 (502)
Q Consensus       212 ~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~--v~~~~IvCPYHGW~Fdl-d  288 (502)
                      ..|+++|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.  +.++.|+||||||+||+ +
T Consensus        23 ~~~~~~W~~v~~~~el~~g~~~~~~i~g~~vvl~~-~~g~i~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~fd~~~  101 (148)
T d1z01a1          23 WGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLET  101 (148)
T ss_dssp             TCBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTT
T ss_pred             cCcccccEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEEeecCccccEeEccccccccCEEEecccCCEEecCc
Confidence            35779999999999999999999999999998877 58999999999999999999885  35678999999999997 5


Q ss_pred             CCcccCCCccc----ccccccccceEEeeceEEEecCCCC
Q 010738          289 GKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP  324 (502)
Q Consensus       289 G~cv~vP~~~~----~~~~L~~~pV~e~~G~IwV~lg~~~  324 (502)
                      |.|..+|....    ...+|++|+|++++|+|||++++++
T Consensus       102 G~~~~~p~~~~~~~~~~~~l~~y~v~~~~g~I~v~l~~~~  141 (148)
T d1z01a1         102 GKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDD  141 (148)
T ss_dssp             CBEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTT
T ss_pred             ceEecccccccccCCccCCcceEEEEEECCEEEEEeCCCC
Confidence            99998887532    3578999999999999999998654

>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Toluene-4-monooxygenase system protein C, TmoC
species: Pseudomonas mendocina [TaxId: 300]

Probab=99.91  E-value=1.3e-24  Score=186.52  Aligned_cols=104  Identities=18%  Similarity=0.256  Sum_probs=94.4

Q ss_pred             ceEEeeecCCCCCCCceeEeeC-CeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM  294 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~-G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~v  294 (502)
                      .|+.||.++||++|+.+.+.+. |++++|+|..+|+++|+.|+|||||++|+.|..+++.|+||||||+||+ +|+|++.
T Consensus         1 ~w~~vc~~~dl~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~~~~~i~Cp~Hg~~F~l~~G~~~~p   80 (109)
T d1vm9a_           1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINP   80 (109)
T ss_dssp             CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSSS
T ss_pred             CeeEEEEHHHCCCCCeEEEEecCCeEEEEEEeCCCeEEEEEeeCCCCCccceeEeccCCEEEcccCCceEECCCccCCCC
Confidence            5999999999999999999985 7999999998999999999999999999999888899999999999996 8999864


Q ss_pred             CCcccccccccccceEEeeceEEEecCCCCC
Q 010738          295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  325 (502)
Q Consensus       295 P~~~~~~~~L~~~pV~e~~G~IwV~lg~~~p  325 (502)
                      |.     ..|++|+|++++|.|||.+++..|
T Consensus        81 ~~-----~~L~~~~v~v~~g~v~V~~~~~~P  106 (109)
T d1vm9a_          81 DD-----AALAEYPVEVKGDDIYVSTKGILP  106 (109)
T ss_dssp             SS-----CBCCEECEEEETTEEEECCTTCCC
T ss_pred             CC-----CCccEEeEEEECCEEEEEeCCCCC
Confidence            43     479999999999999998866544

>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Erwinia carotovora [TaxId: 554]

Probab=99.91  E-value=3e-24  Score=188.17  Aligned_cols=104  Identities=18%  Similarity=0.190  Sum_probs=92.6

Q ss_pred             cceEEeeecCCCCCCCceeEeeCCeeEEEEEc-CCCceEEEeecCCCCCCC-CCCCCc----cceeeeeeecceEEcC-C
Q 010738          216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSV----NEGRIQCPYHGWEYST-D  288 (502)
Q Consensus       216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~-~dG~v~A~~N~CpHRGa~-Ls~G~v----~~~~IvCPYHGW~Fdl-d  288 (502)
                      +.|+.||.++||++|+.+.+.+.|++|+|+|. .+|+++|++|+|||+|++ |+.|.+    ++..|+||||||+||+ |
T Consensus         2 s~W~~Vc~~~dl~~g~~~~v~v~g~~v~l~~~~~~g~v~A~~~~CpH~g~~ll~~G~v~~~~~~~~i~Cp~Hg~~F~l~t   81 (122)
T d2jzaa1           2 SQWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD   81 (122)
T ss_dssp             CSEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTT
T ss_pred             CCcEEEEEHHHcCCCCeEEEEECCEEEEEEEEcCCCEEEEEecCCCcccccccccceeeeccCCCEEECCCCCCeeeccc
Confidence            36999999999999999999999999999994 579999999999999999 677754    3457999999999996 8


Q ss_pred             CCcccCCCcccccccccccceEEeeceEEEecCCCC
Q 010738          289 GKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEP  324 (502)
Q Consensus       289 G~cv~vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~~  324 (502)
                      |+|+..|.     ..|++|+|++++|.|||.+.+.+
T Consensus        82 G~~~~~p~-----~~l~~~~v~v~~g~V~v~~~~~~  112 (122)
T d2jzaa1          82 GFCLEDGA-----YSVAAYDTQVTNGNVQISIADSD  112 (122)
T ss_dssp             CCBSSCCS-----SCCBCCCEEESSSEEEEECCCCC
T ss_pred             ceeeeccc-----cCCCccceEEECCEEEEEeCCcC
Confidence            99999886     36999999999999999987654

>d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=6.2e-24  Score=182.14  Aligned_cols=99  Identities=18%  Similarity=0.202  Sum_probs=88.2

Q ss_pred             cceEEeeecCCCCCCCceeEeeCCeeEEEEE-cCCCceEEEeecCCCCCCC-CCCCCcc----ceeeeeeecceEEcC-C
Q 010738          216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFR-GKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYST-D  288 (502)
Q Consensus       216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R-~~dG~v~A~~N~CpHRGa~-Ls~G~v~----~~~IvCPYHGW~Fdl-d  288 (502)
                      ..|++||+++||++|+++.+.++|++|+|+| +.+|+++|+.|.|||+|++ |+.|.+.    +..|+||||||+||+ |
T Consensus         2 s~W~~vc~~~dl~~g~~~~~~~~g~~i~l~r~~~~g~v~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~F~l~t   81 (108)
T d2jo6a1           2 SQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSD   81 (108)
T ss_dssp             CCCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTT
T ss_pred             CCCEEEeEHHHCCCCCeEEEEECCEEEEEEEECcCCEEEEEECcCCCCCCccccceeEeccccCCEEECCCCCceEECCC
Confidence            3799999999999999999999999999999 5689999999999999998 6666543    346999999999996 8


Q ss_pred             CCcccCCCcccccccccccceEEeeceEEEe
Q 010738          289 GKCEKMPSTQLRNVKIKSLPCFEQEGMIWIW  319 (502)
Q Consensus       289 G~cv~vP~~~~~~~~L~~~pV~e~~G~IwV~  319 (502)
                      |+|+..|.     .+|++|||++++|.|||.
T Consensus        82 G~~~~~p~-----~~l~~y~v~v~~g~V~V~  107 (108)
T d2jo6a1          82 GLCMEDEQ-----FSVKHYEARVKDGVVQLR  107 (108)
T ss_dssp             TEETTTTT-----TCCCEEEEEEETTEEEEE
T ss_pred             ccCCCCCC-----CcccEEeEEEECCEEEEe
Confidence            99999886     369999999999999984

>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Rieske-type ferredoxin associated with biphenyl dioxygenase
species: Burkholderia cepacia [TaxId: 292]

Probab=99.88  E-value=6.5e-23  Score=176.00  Aligned_cols=102  Identities=18%  Similarity=0.250  Sum_probs=93.5

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCC-ccceeeeeeecceEEcC-CCCcccC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYST-DGKCEKM  294 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~-v~~~~IvCPYHGW~Fdl-dG~cv~v  294 (502)
                      .|+.||.++||++|+.+.+++.|.+|+|+|. +|+++|+.|+|||+|++|+.|. .+++.|+||+|||+||+ ||+|+..
T Consensus         2 ~w~~v~~~~dl~~g~~~~~~~~~~~i~v~r~-~~~~~A~~~~CpH~g~~l~~g~~~~~~~i~Cp~H~~~F~l~tG~~~~~   80 (109)
T d1fqta_           2 KFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSP   80 (109)
T ss_dssp             CCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEES
T ss_pred             cEEEeeEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEEeeccccCcccccceeecCCEEEccccCCEEECCCccCccC
Confidence            6999999999999999999999999999996 6899999999999999999874 56789999999999996 8999999


Q ss_pred             CCcccccccccccceEEeeceEEEecCCC
Q 010738          295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (502)
Q Consensus       295 P~~~~~~~~L~~~pV~e~~G~IwV~lg~~  323 (502)
                      |..    .+|++|++++++|.|||.++++
T Consensus        81 p~~----~~l~~~~v~~~~g~i~v~~~~~  105 (109)
T d1fqta_          81 PPC----EALKIFPIRIEDNDVLVDFEAG  105 (109)
T ss_dssp             SCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred             CCC----CCCCEEeEEEECCEEEEEeCCC
Confidence            874    4699999999999999998754

>d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.88  E-value=4e-23  Score=177.07  Aligned_cols=99  Identities=14%  Similarity=0.014  Sum_probs=88.7

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCC-c----cceeeeeeecceEEcC-CCC
Q 010738          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-V----NEGRIQCPYHGWEYST-DGK  290 (502)
Q Consensus       217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~-v----~~~~IvCPYHGW~Fdl-dG~  290 (502)
                      .|..||.++||++|+.+.+.+.|++++|+|..+|+++|++|+|||+|++|..+. +    ++..|+||||||.||+ +|+
T Consensus         2 ~~v~vc~~~dl~~g~~~~~~~~g~~i~v~r~~~g~~~A~~~~CpH~g~~L~~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~   81 (108)
T d3c0da1           2 TKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQ   81 (108)
T ss_dssp             CEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTCB
T ss_pred             CcEEEEEHHHCCCCCEEEEEECCEEEEEEEeCCCCEEEEEccCCCCCcccccccEEEecCCceEEeccccccEEeccCCc
Confidence            689999999999999999999999999999889999999999999999986542 2    2346999999999996 899


Q ss_pred             cccCCCcccccccccccceEEeeceEEEec
Q 010738          291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWP  320 (502)
Q Consensus       291 cv~vP~~~~~~~~L~~~pV~e~~G~IwV~l  320 (502)
                      |+..|..     +|++|||++++|.|||..
T Consensus        82 ~~~~p~~-----~l~~y~v~v~~g~V~V~~  106 (108)
T d3c0da1          82 CLEDEAH-----CLKTWRVTVDDNQVCYLA  106 (108)
T ss_dssp             BSSCTTC-----BCCEECEEESSSEEEEEC
T ss_pred             cccCCCC-----cccEEeEEEECCEEEEEe
Confidence            9988763     699999999999999975

>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from chloroplast cytochrome bf complex
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.71  E-value=2e-18  Score=152.42  Aligned_cols=95  Identities=18%  Similarity=0.340  Sum_probs=76.8

Q ss_pred             CCCCCCCceeE-eeCCeeEEEEEc--CCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCccccc
Q 010738          225 TDLKDDTMVPF-DCFEEPWVIFRG--KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRN  301 (502)
Q Consensus       225 seL~~g~~~~~-~l~G~~IVV~R~--~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~  301 (502)
                      .+.+.|+...+ .+.|+++++++.  .+|+++||+|+|||+|++|..+. .++.|+||||||+||.+|+|+..|+.    
T Consensus        18 ~~~~~G~~~l~~~~~g~~~~lvv~~d~~~~v~A~~~~C~H~g~~l~~~~-~~~~~~Cp~Hg~~Fd~~G~~~~~Pa~----   92 (127)
T d1rfsa_          18 KTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGRVVRGPAP----   92 (127)
T ss_dssp             HHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCCEEESSCC----
T ss_pred             cccCCCcceeeeeecCCceEEEEEeCCCCEEEEEcCCCCCCCCCccCcc-cCCeEEcCCCCeEECCCCCCCcCCCC----
Confidence            45556655444 466777666654  44589999999999999999876 45689999999999999999999984    


Q ss_pred             ccccccceEEeeceEEEecCCCC
Q 010738          302 VKIKSLPCFEQEGMIWIWPGDEP  324 (502)
Q Consensus       302 ~~L~~~pV~e~~G~IwV~lg~~~  324 (502)
                      .+|+.|++++++|.|||....+.
T Consensus        93 ~~L~~~~v~v~~g~i~v~~~~~~  115 (127)
T d1rfsa_          93 LSLALAHCDVDDGKVVFVPWTET  115 (127)
T ss_dssp             SCCCEEEEEEETTEEEEEECCSC
T ss_pred             CCcceEeEEEECCEEEEEcCCcc
Confidence            58999999999999999875543

>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from the cytochrome b6f complex, soluble domain
species: Mastigocladus laminosus [TaxId: 83541]

Probab=99.66  E-value=2.2e-17  Score=146.88  Aligned_cols=92  Identities=18%  Similarity=0.316  Sum_probs=71.1

Q ss_pred             CCCCCC-ceeEeeCCee--EEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCcccccc
Q 010738          226 DLKDDT-MVPFDCFEEP--WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNV  302 (502)
Q Consensus       226 eL~~g~-~~~~~l~G~~--IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~  302 (502)
                      ..+.|+ .....+.|.+  +++.|+.+|+++||+|+|||+|++|+.|.. ++.|+||||||+||.+|+|+..|..    .
T Consensus        27 ~~~~g~~~l~~~~~g~~~~~~v~~~~~g~~~A~~~~C~H~G~~l~~g~~-~~~~~Cp~Hg~~Fd~~G~~~~gPa~----~  101 (134)
T d2e74d1          27 SHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDETGKVIRGPAP----L  101 (134)
T ss_dssp             SSCSTTCEEEECGGGCEEEEC-----CCCSEEEECBCTTTCCBCCBCTT-TSCEEETTTTEEECSSSCBCSSSCC----S
T ss_pred             ccCCCceEeeeecCCCceEEEEEeCCCCcEEEEeccccCCEEEcccccc-CCccCCCCCCcEECCCCCEEeCCCC----C
Confidence            334443 3344455566  455567789999999999999999999874 5689999999999999999999984    5


Q ss_pred             cccccceEEeeceEEEecCC
Q 010738          303 KIKSLPCFEQEGMIWIWPGD  322 (502)
Q Consensus       303 ~L~~~pV~e~~G~IwV~lg~  322 (502)
                      +|++|++++.+|.|||....
T Consensus       102 ~L~~y~v~v~~~~i~V~p~~  121 (134)
T d2e74d1         102 SLALCHATVQDDNIVLTPWT  121 (134)
T ss_dssp             CCCEEEEECCTTSCEEEECC
T ss_pred             CcceeeEEEECCEEEEeCCc
Confidence            79999999999999997654

>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Arsenite oxidase Rieske subunit
species: Alcaligenes faecalis [TaxId: 511]

Probab=99.64  E-value=3.8e-17  Score=145.22  Aligned_cols=89  Identities=20%  Similarity=0.294  Sum_probs=75.5

Q ss_pred             EeeecCCCCCCCceeEee--CCeeEEEEEc---------CCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-
Q 010738          220 PVAFSTDLKDDTMVPFDC--FEEPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-  287 (502)
Q Consensus       220 ~V~~~seL~~g~~~~~~l--~G~~IVV~R~---------~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-  287 (502)
                      .|+.+++|+.|+++.+.+  .+.+.+++|.         .||+++||+|+|||+|++|+.+. .++.|+||||||+||. 
T Consensus        10 ~v~~~~~l~~~~p~~f~yp~~~~p~~lVr~g~~v~~~~g~~g~i~A~~~~CpH~g~~l~~~~-~~~~i~Cp~Hg~~Fd~~   88 (133)
T d1g8kb_          10 AVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYDS-SSKTFSCPCHFTEFDAE   88 (133)
T ss_dssp             EEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEET-TTTEEECTTTCCEEEGG
T ss_pred             heEEHHHCCCCCCEEEeccCCCCCEEEEEcCCceeEEECCCCEEEEEehhcCCCCcccccCc-ccCEEECCCCCeEEecC
Confidence            699999999999988885  7888999984         46899999999999999999765 4568999999999995 


Q ss_pred             -CCCcccCCCcccccccccccceEEee
Q 010738          288 -DGKCEKMPSTQLRNVKIKSLPCFEQE  313 (502)
Q Consensus       288 -dG~cv~vP~~~~~~~~L~~~pV~e~~  313 (502)
                       +|+++..|+.    ..|+.|+++..+
T Consensus        89 ~~G~~~~gPa~----~~L~~~~v~ve~  111 (133)
T d1g8kb_          89 KAGQMICGEAT----ADLPRVLLRYDA  111 (133)
T ss_dssp             GTTEEEESSCS----SCCCEEEEEEET
T ss_pred             CCceEeCCCCC----CCCCeEeEEEEC
Confidence             5999999974    467777777543

>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Soluble Rieske protein
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=1.3e-14  Score=131.76  Aligned_cols=68  Identities=19%  Similarity=0.295  Sum_probs=60.4

Q ss_pred             CceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC--CCCcccCCCcccccccccccceEEeeceEEEecC
Q 010738          250 GIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST--DGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG  321 (502)
Q Consensus       250 G~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl--dG~cv~vP~~~~~~~~L~~~pV~e~~G~IwV~lg  321 (502)
                      +.|+||.|+|+|+|++|+.+...++.|.||||||+||.  +|+++..|..    ..|+.|++++++|.|||.-+
T Consensus        78 d~i~A~~~~CtH~g~~l~~~~~~~~~~~Cp~Hgs~FD~~~gg~v~~gPa~----~~L~~~~~~~~~g~i~v~~d  147 (156)
T d1nyka_          78 EGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGE  147 (156)
T ss_dssp             TTEEEEECBCTTTCCBCCEEEGGGTEEECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSS
T ss_pred             CcEEEEcccCcccccccccccccCCeeeccccceEEecCCCceEeCCCCC----CCCCEEEEEEECCEEEEeec
Confidence            34899999999999999988888899999999999995  5888888874    57999999999999999643

>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=9e-12  Score=109.56  Aligned_cols=93  Identities=18%  Similarity=0.194  Sum_probs=80.3

Q ss_pred             eecCCCCCCCceeEeeCCeeEEEEEc--------------------------CCCceEEEeecCCCCCCCCCCCCcccee
Q 010738          222 AFSTDLKDDTMVPFDCFEEPWVIFRG--------------------------KDGIPGCVQNTCAHRACPLHLGSVNEGR  275 (502)
Q Consensus       222 ~~~seL~~g~~~~~~l~G~~IVV~R~--------------------------~dG~v~A~~N~CpHRGa~Ls~G~v~~~~  275 (502)
                      -..++|++|+.+++..-|.|++|.|.                          .++++.++...|+|.||.+.......+.
T Consensus        10 VDis~l~pG~~~~V~WrGkPVfI~~Rt~e~i~~~~~~~~~~l~dp~~~~~r~~~~~~~v~~~~CtHlGC~~~~~~~~~~~   89 (129)
T d3cx5e1          10 VNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGG   89 (129)
T ss_dssp             EEGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEEETTTTE
T ss_pred             EehhhCCCCCeEEEEeCCceEEEEecCHHHhhhccccccccccccccchhccccccEEEEEeeccCcceeeeeccCcCCe
Confidence            35788999999999999999988764                          2478999999999999998876655678


Q ss_pred             eeeeecceEEcCCCCcccCCCcccccccccccceEEeeceEEE
Q 010738          276 IQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI  318 (502)
Q Consensus       276 IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~~G~IwV  318 (502)
                      |.||+||.+||.+|+.+..|+    +..|..+|+...++-|.|
T Consensus        90 ~~CPCHgs~fd~~G~v~~GPA----~~~L~~~~~~~~~~~i~i  128 (129)
T d3cx5e1          90 WFCPCHGSHYDISGRIRKGPA----PLNLEIPAYEFDGDKVIV  128 (129)
T ss_dssp             EEETTTTEEECTTCCEEESSC----CSCCCCCCEEEETTEEEE
T ss_pred             EEEcCcCCCCCCCCCEEeCCC----CCCCCCCcEEEECCEEEE
Confidence            999999999999999999987    468999999998887765

>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.15  E-value=6e-11  Score=103.93  Aligned_cols=91  Identities=18%  Similarity=0.288  Sum_probs=77.0

Q ss_pred             ecCCCCCCCceeEeeCCeeEEEEEcC--------------------------CCceEEEeecCCCCCCCCCCCCccceee
Q 010738          223 FSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGSVNEGRI  276 (502)
Q Consensus       223 ~~seL~~g~~~~~~l~G~~IVV~R~~--------------------------dG~v~A~~N~CpHRGa~Ls~G~v~~~~I  276 (502)
                      ..++|++|+.+++..-|.|++|.|..                          ++++.++...|+|.||.......+.+.|
T Consensus         8 DlS~lepG~~~~V~WrGkPvfV~rRt~e~i~~~~~~~~~~l~dp~~~~~r~~~~~~~~~~~~CtHlGC~~~~~~~~~~~f   87 (127)
T d1riea_           8 KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGY   87 (127)
T ss_dssp             EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCTTTEEE
T ss_pred             ehhhCCCCCEEEEEECCceeEEEecCHHHhhhhhccchhhhcCccccccccccceEEEEEeccCCCCceeecccccCCeE
Confidence            56789899999999999999998742                          6789999999999999876655555789


Q ss_pred             eeeecceEEcCCCCcccCCCcccccccccccceEEee-ceEE
Q 010738          277 QCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIW  317 (502)
Q Consensus       277 vCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~~-G~Iw  317 (502)
                      .||+||.+||.+|+.+..|+    +..|..+|+...+ +.|-
T Consensus        88 ~CPCHgs~fd~~Grv~~GPA----p~~L~~p~~~~~~d~~v~  125 (127)
T d1riea_          88 YCPCHGSHYDASGRIRKGPA----PLNLEVPSYEFTSDDMVI  125 (127)
T ss_dssp             EETTTTEEEETTCCEEESSC----CSCCCCCCEEESSSSEEE
T ss_pred             EecCcCCcCCCCCCEEcCCC----CCCCCCCcEEEeCCCEEE
Confidence            99999999999999999997    4678888988775 4443

>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Rieske protein II (SoxF)
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.78  E-value=1.9e-09  Score=101.15  Aligned_cols=69  Identities=22%  Similarity=0.383  Sum_probs=57.4

Q ss_pred             EcCCCceEEEeecCCCCCCCCCCC-----------CccceeeeeeecceEEcC--CCCcccCCCcccccccccccceEEe
Q 010738          246 RGKDGIPGCVQNTCAHRACPLHLG-----------SVNEGRIQCPYHGWEYST--DGKCEKMPSTQLRNVKIKSLPCFEQ  312 (502)
Q Consensus       246 R~~dG~v~A~~N~CpHRGa~Ls~G-----------~v~~~~IvCPYHGW~Fdl--dG~cv~vP~~~~~~~~L~~~pV~e~  312 (502)
                      .+.+|.|.||.++|+|.||++...           ...++.|.||+||++||.  +|+++..|+.    ..|..++++.+
T Consensus        79 VGp~~~ivA~s~iCtHlGC~~~~~~~~~~~~~~~~~~~~~~i~CpcHgS~FD~~~gG~v~~GPA~----~pLp~v~Le~d  154 (202)
T d1jm1a_          79 VGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAP----RPLPIVILDYD  154 (202)
T ss_dssp             BTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGGTSEEEESSCC----SCCCBEEEEEC
T ss_pred             cCCCCeEEEEeCcCCCCCCcccccccccccccccccCCCCEEEccCcCCEEcCCCCCeEeCCCCC----CCcCccEEEEe
Confidence            356899999999999999999753           124578999999999996  5999999984    57899999876


Q ss_pred             --eceEEE
Q 010738          313 --EGMIWI  318 (502)
Q Consensus       313 --~G~IwV  318 (502)
                        .|.||+
T Consensus       155 ~~~g~iyA  162 (202)
T d1jm1a_         155 SSTGDIYA  162 (202)
T ss_dssp             TTTCEEEE
T ss_pred             CCCCeEEE
Confidence              499995

>d1z01a2 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
species: Pseudomonas putida [TaxId: 303]

Probab=97.91  E-value=1e-05  Score=78.36  Aligned_cols=59  Identities=15%  Similarity=0.177  Sum_probs=41.8

Q ss_pred             eceEEEecCCCC--CCCCCCCCCC--CCCceEeEEEEEEEecccchhccccCCCCCCCcCCcccc
Q 010738          313 EGMIWIWPGDEP--PTATIPCLLP--PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF  373 (502)
Q Consensus       313 ~G~IwV~lg~~~--p~~~lpe~~~--~~~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tf  373 (502)
                      +|++|+++++.+  |.+.+|.++.  ..+..+.. ....++|||.+.+||.+|.+|+ |+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~p~~p~~p~~~~~~~~~~~-~~~~~~~NWlQ~~En~iD~aH~-fLH~~s~   66 (279)
T d1z01a2           4 HDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVHG-MHRTGFGNWRIACENGFDNAHI-LVHKDNT   66 (279)
T ss_dssp             GGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEEE-EEEEEESCHHHHHTTTTCTTGG-GGGTTCH
T ss_pred             cCCceecCCccccCCCCCCCCCCcccCCCceEEE-EEEEeecchhhhhhcCcChhhe-eeecccc
Confidence            588999987654  3333444443  22333333 4568999999999999999998 9998764

>d2bmoa2 d.129.3.3 (A:153-439) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha
species: Comamonas sp. JS765 [TaxId: 58226]

Probab=96.91  E-value=4.9e-05  Score=72.38  Aligned_cols=39  Identities=18%  Similarity=0.283  Sum_probs=31.9

Q ss_pred             CceEeE-EEEEEEecccchhccccC-CCCCCCcCCcccccC
Q 010738          337 GFEIHA-EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAK  375 (502)
Q Consensus       337 ~~~v~~-~~~~~v~~Nwk~~vEN~l-D~yH~~~vH~~tfg~  375 (502)
                      +.++.+ ..++.++||||+++|||+ |.||++++|++++..
T Consensus        25 ~lev~~g~~r~~~~~NWKl~~ENf~~D~YH~~~~H~s~~~~   65 (287)
T d2bmoa2          25 GLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRA   65 (287)
T ss_dssp             CEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred             CeEEEcceEEEEECCCcchHhhcccccccCCCccchhHHhc
Confidence            455543 567899999999999996 999999999876543

>d2b1xa2 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Naphthalene 1,2-dioxygenase alpha subunit, C-domain
species: Rhodococcus sp. ncimb12038 [TaxId: 92694]

Probab=96.89  E-value=4.5e-05  Score=73.00  Aligned_cols=40  Identities=23%  Similarity=0.266  Sum_probs=33.0

Q ss_pred             CCceEeE-EEEEEEecccchhccccC-CCCCCCcCCcccccC
Q 010738          336 SGFEIHA-EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAK  375 (502)
Q Consensus       336 ~~~~v~~-~~~~~v~~Nwk~~vEN~l-D~yH~~~vH~~tfg~  375 (502)
                      .+.++.+ ..++.++||||+++|||+ |.||++++|.+....
T Consensus        24 ~glev~~g~~r~~i~~NWKl~~EN~~~D~YH~~~tH~S~~~~   65 (279)
T d2b1xa2          24 AGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVEL   65 (279)
T ss_dssp             SCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHHH
T ss_pred             CceEEecCceEEEEcCCCchhhhcCCCcCCCccccchhHHhh
Confidence            4566654 578999999999999997 999999999976543

>d1ulia2 d.129.3.3 (A:171-451) Biphenyl dioxygenase large subunit BphA1, C-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Biphenyl dioxygenase large subunit BphA1, C-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

Probab=96.53  E-value=8.8e-05  Score=70.56  Aligned_cols=38  Identities=18%  Similarity=0.136  Sum_probs=31.0

Q ss_pred             CCceEe-EEEEEEEecccchhccccC-CCCCCCcCCcccc
Q 010738          336 SGFEIH-AEIVMELPIEHGLLLDNLL-DLAHAPFTHTSTF  373 (502)
Q Consensus       336 ~~~~v~-~~~~~~v~~Nwk~~vEN~l-D~yH~~~vH~~tf  373 (502)
                      .+.++. +..++.++||||+++|||+ |.||++++|....
T Consensus        24 ~g~ev~~g~~r~~~~~NWKl~~ENf~~D~YH~~~~H~~~~   63 (281)
T d1ulia2          24 AGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSG   63 (281)
T ss_dssp             TCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHH
T ss_pred             CceEEecCceEEEecCCCeehhhcCCCCCccchhhhhhHH
Confidence            455655 4567899999999999998 9999999997544

>d1wqla2 d.129.3.3 (A:181-459) Large subunit of cumene dioxygenase cumA1 {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Large subunit of cumene dioxygenase cumA1
species: Pseudomonas fluorescens [TaxId: 294]

Probab=95.84  E-value=0.00038  Score=66.28  Aligned_cols=37  Identities=11%  Similarity=0.092  Sum_probs=29.6

Q ss_pred             CCceEe-EEEEEEEecccchhccccC-CCCCCCcCCccc
Q 010738          336 SGFEIH-AEIVMELPIEHGLLLDNLL-DLAHAPFTHTST  372 (502)
Q Consensus       336 ~~~~v~-~~~~~~v~~Nwk~~vEN~l-D~yH~~~vH~~t  372 (502)
                      .+.++. +..++.++||||+++|||. |.||++.+|...
T Consensus        24 ~g~ev~~g~~r~~~~~NWKl~~ENf~~D~YH~~~~hh~~   62 (279)
T d1wqla2          24 AVTQVITGMQKTVIPCNWKFAAEQFCSDMYHAGTMAHLS   62 (279)
T ss_dssp             TCEEECSCCEEEEESSCHHHHHHHHHHBCHHHHTTTTHH
T ss_pred             CceEEeccceEeeecCCceehhhcCCCCCcChhhhhhhh
Confidence            455554 4567899999999999986 999998887643

>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Terminal oxygenase component of carbazole CarAa
species: Janthinobacterium sp. j3 [TaxId: 213804]

Probab=87.24  E-value=0.092  Score=48.60  Aligned_cols=41  Identities=22%  Similarity=0.332  Sum_probs=31.2

Q ss_pred             CCCCCCCCceEeEEEEEEEecccchhccccCCCCCCCcCCcccc
Q 010738          330 PCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF  373 (502)
Q Consensus       330 pe~~~~~~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tf  373 (502)
                      |.+++ +...+. .....+.+||.+.+||.+|..|+ |+|..+.
T Consensus         9 P~fLd-~d~v~~-G~~r~~~aNWRla~ENGFD~~Hi-~iHkds~   49 (242)
T d2de6a2           9 PNFLD-DDMEIL-GKNQIIKSNWRLAVENGFDPSHI-YIHKDSI   49 (242)
T ss_dssp             TTTTC-TTEEEE-EEEEEESSCHHHHHHHHHCGGGG-GGGTTCH
T ss_pred             ccccC-CCceee-ccccccccceEEeeccCcCcccE-EEecCCc
Confidence            34543 334444 34578999999999999999999 9998654