Citrus Sinensis ID: 010742

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
MNYYSSSYLSHQIVYRASTVRKLMNDAENMCQLVKNFSTEEKSKLSLLPCLCGKPNSFEVLSDESDSVRENIGFDISDLASEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMIVFLAPVAFVQGLTRLHQLSHAFPFLKGMFKQKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIKVLSFTIWNVFFVNVLSGSIMGQLNAISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGLVYNTMKKCVCRIKEDQPNGFLSFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALGVFGIKRSTVAFGFTIPLIFGTLLFNEYCRQRFFPTFTKMSAQVLTEMDRQDEQGGRMEEIYQQLRSAYCQFRLISQDLCKSGRMDHQGDQNSIRIHSQ
cccccccccHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHcccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccc
ccccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccccccccccEEcccc
mnyysssylSHQIVYRASTVRKLMNDAENMCQLVKNFsteeksklsllpclcgkpnsfevlsdesdsvrenigfdisdlasEKEYAVAFVYFKTRYAAIVAAEVLhsenpmlwvtelapepndvlwsnlcipyrQLWFRKIAILLAAIAFMIVFLAPVAFVQGLTRLHQLSHAFPFLKGMFKQKYIKQLVTGYLPSVILILFqyavpptmmLFSTvegsvshsgrkrsACIKVLSFTIWNVFFVNVLSGSIMGQLNAISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGLVYNTMKKCVCrikedqpngflsfpyhTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYttdyesggkfwpiahnSTIVSLVLTQIIALGVFgikrstvafgfTIPLIFGTLLFNEYCRQRFFPTFTKMSAQVLTEMdrqdeqggRMEEIYQQLRSAYCQFRLISQdlcksgrmdhqgdqnsirihsq
mnyysssylshQIVYRASTVRKLMNDAENMCQLVKNFSTEEKSKLSLLPCLCGKPNSFEVLSDESDSVRENIGFdisdlaseKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMIVFLAPVAFVQGLTRLHQLSHAFPFLKGMFKQKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIKVLSFTIWNVFFVNVLSGSIMGQLNAISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGLVYNTMKKCVCRIKEDQPNGFLSFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALGVFGIKRSTVAFGFTIPLIFGTLLFNEYCRQRFFPTFTKMSAQVLTEMDRQDEQGGRMEEIYQQLRSAYCQFRLISQDLCKSgrmdhqgdqnsirihsq
MNYYSSSYLSHQIVYRASTVRKLMNDAENMCQLVKNFSTEEKSKLSLLPCLCGKPNSFEVLSDESDSVRENIGFDISDLASEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKiaillaaiafmivflaPVAFVQGLTRLHQLSHAFPFLKGMFKQKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIKVLSFTIWNVFFVNVLSGSIMGQLNAISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGLVYNTMKKCVCRIKEDQPNGFLSFPYHTEVSKLLMFGFLGFICSVMaplilpllliyfvlaylvYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALGVFGIKRSTVAFGFTIPLIFGTLLFNEYCRQRFFPTFTKMSAQVLTEMDRQDEQGGRMEEIYQQLRSAYCQFRLISQDLCKSGRMDHQGDQNSIRIHSQ
******SYLSHQIVYRASTVRKLMNDAENMCQLVKNFSTEEKSKLSLLPCLCGKPNSFEVL******VRENIGFDISDLASEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMIVFLAPVAFVQGLTRLHQLSHAFPFLKGMFKQKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIKVLSFTIWNVFFVNVLSGSIMGQLNAISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGLVYNTMKKCVCRIKEDQPNGFLSFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALGVFGIKRSTVAFGFTIPLIFGTLLFNEYCRQRFFPTFTKMSAQVL**************EIYQQLRSAYCQFRLISQDLC*******************
*NYYSSSYLSHQIVYRASTVRKLMNDAE******************LLPCLCGKPNSFEVLSDESDSVRENIG*********KEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMIVFLAPVAFVQGLTRLHQLSHAFPFLKGMFKQKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIKVLSFTIWNVFFVNVLSGSIMGQLNAISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGLVYNTMKKCVCRIKEDQPNGFLSFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALGVFGIKRSTVAFGFTIPLIFGTLLFNEYCRQRFFPTFTKMSA*********************************************************
MNYYSSSYLSHQIVYRASTVRKLMNDAENMCQLVKNFSTEEKSKLSLLPCLCGKPNSFEVLSDESDSVRENIGFDISDLASEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMIVFLAPVAFVQGLTRLHQLSHAFPFLKGMFKQKYIKQLVTGYLPSVILILFQYAVPPTMMLFST***********RSACIKVLSFTIWNVFFVNVLSGSIMGQLNAISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGLVYNTMKKCVCRIKEDQPNGFLSFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALGVFGIKRSTVAFGFTIPLIFGTLLFNEYCRQRFFPTFTKMSAQVLTEMDRQDEQGGRMEEIYQQLRSAYCQFRLISQDLCKSG****************
MNYYSSSYLSHQIVYRASTVRKLMNDAENMCQLVKNFSTEEKSKLSLLPCLCGKPNSFEVLSDESDSVRENIGFDISDLASEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMIVFLAPVAFVQGLTRLHQLSHAFPFLKGMFKQKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIKVLSFTIWNVFFVNVLSGSIMGQLNAISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGLVYNTMKKCVCRIKEDQPNGFLSFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALGVFGIKRSTVAFGFTIPLIFGTLLFNEYCRQRFFPTFTKMSAQVLTEMDRQDEQGGRMEEIYQQLRSAYCQFRLI************************
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MNYYSSSYLSHQIVYRASTVRKLMNDAENMCQLVKNFSTEEKSKLSLLPCLCGKPNSFEVLSDESDSVRENIGFDISDLASEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMIVFLAPVAFVQGLTRLHQLSHAFPFLKGMFKQKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIKVLSFTIWNVFFVNVLSGSIMGQLNAISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGLVYNTMKKCVCRIKEDQPNGFLSFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALGVFGIKRSTVAFGFTIPLIFGTLLFNEYCRQRFFPTFTKMSAQVLTEMDRQDEQGGRMEEIYQQLRSAYCQFRLISQDLCKSGRMDHQGDQNSIRIHSQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query502 2.2.26 [Sep-21-2011]
Q03516 953 Uncharacterized protein R yes no 0.713 0.375 0.249 3e-21
Q06538782 Uncharacterized membrane no no 0.741 0.475 0.255 4e-19
Q12252 991 Phosphate metabolism prot no no 0.776 0.393 0.224 2e-16
Q09809793 Uncharacterized membrane yes no 0.637 0.403 0.259 4e-16
Q09766 871 Uncharacterized membrane no no 0.725 0.417 0.227 1e-12
O43022 865 Uncharacterized protein C no no 0.707 0.410 0.221 4e-09
Q3TWI9832 Transmembrane protein 63B yes no 0.597 0.360 0.210 5e-08
Q5T3F8832 Transmembrane protein 63B yes no 0.591 0.356 0.209 7e-08
Q91YT8804 Transmembrane protein 63A no no 0.496 0.309 0.209 1e-07
Q5R826807 Transmembrane protein 63A yes no 0.593 0.369 0.206 2e-07
>sp|Q03516|RSN1_YEAST Uncharacterized protein RSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSN1 PE=1 SV=1 Back     alignment and function desciption
 Score =  103 bits (257), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 172/365 (47%), Gaps = 7/365 (1%)

Query: 54  KPNSFEVLSDESDSVRENIGFDISDLASEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLW 113
           K ++   + +E   + + +     D  +   +   FV F+++Y A VAA++     P+  
Sbjct: 301 KVDTISYIKEELPKLNQKVKALQEDHENSSPFNSVFVEFESQYQAQVAAQITTYHAPLFM 360

Query: 114 V-TELAPEPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMIVFLAPVAFVQGLTRLHQLSH 172
               +  EP+DV+W NL + + +   R+++ + A +A +I++  PVAFV  ++ +  L++
Sbjct: 361 TPVYIGIEPSDVVWFNLRMFWWERLGREVSAVSAIVALVILWAFPVAFVGMISNITSLTN 420

Query: 173 AFPFLKGMFK-QKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACI 231
              +LK ++K  K +  L+T   P+V L +    +P  +   +  +G+ S    +     
Sbjct: 421 EVKWLKFIYKLPKQLLGLLTSLAPTVALAVLMSFLPKFIRGMAITQGAPSKQNVEYFTQQ 480

Query: 232 KVLSFTIWNVFFVNVLSGSIMGQLNAI-SSVKIILNQLAAAVPIQASFFMTYVLTSGWA- 289
              +F +  VF V  LS +    +  I       ++ LA+ +P  ++FFM+YV+  G + 
Sbjct: 481 AYFAFQVIQVFLVTTLSSAATSTVTEIVKEPTKAMDLLASNLPKASNFFMSYVILQGLSI 540

Query: 290 -SLAVEMVQPLGLVY--NTMKKCVCRIKEDQPNGFLSFPYHTEVSKLLMFGFLGFICSVM 346
            S A+  + PL L Y          R K ++  G  S  + T          + F  S++
Sbjct: 541 SSGALLQIVPLILFYVLGAFLDGTVRKKWNRFCGLSSMQWGTAFPVYTNLAVITFSYSII 600

Query: 347 APLILPLLLIYFVLAYLVYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALGVF 406
           +PLIL    + F L Y+ Y   +  VY    ++ G ++P A   TIV + + QI  LG+F
Sbjct: 601 SPLILLFAAVAFFLLYIAYLYNLTYVYQESPDARGIYYPRALFQTIVGIYIGQICLLGLF 660

Query: 407 GIKRS 411
            + + 
Sbjct: 661 AVGKG 665

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|Q06538|YL241_YEAST Uncharacterized membrane protein YLR241W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR241W PE=1 SV=1 Back     alignment and function description
>sp|Q12252|PHM7_YEAST Phosphate metabolism protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHM7 PE=1 SV=1 Back     alignment and function description
>sp|Q09809|YAB9_SCHPO Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=3 SV=2 Back     alignment and function description
>sp|Q09766|YA7D_SCHPO Uncharacterized membrane protein C24H6.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.13 PE=1 SV=1 Back     alignment and function description
>sp|O43022|YGV8_SCHPO Uncharacterized protein C354.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC354.08c PE=4 SV=1 Back     alignment and function description
>sp|Q3TWI9|TM63B_MOUSE Transmembrane protein 63B OS=Mus musculus GN=Tmem63b PE=1 SV=1 Back     alignment and function description
>sp|Q5T3F8|TM63B_HUMAN Transmembrane protein 63B OS=Homo sapiens GN=TMEM63B PE=1 SV=1 Back     alignment and function description
>sp|Q91YT8|TM63A_MOUSE Transmembrane protein 63A OS=Mus musculus GN=Tmem63a PE=2 SV=1 Back     alignment and function description
>sp|Q5R826|TM63A_PONAB Transmembrane protein 63A OS=Pongo abelii GN=TMEM63A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
224067148 736 predicted protein [Populus trichocarpa] 0.978 0.667 0.649 0.0
255537944 731 conserved hypothetical protein [Ricinus 0.990 0.679 0.609 1e-177
356577692 750 PREDICTED: uncharacterized membrane prot 0.984 0.658 0.582 1e-172
302142147 722 unnamed protein product [Vitis vinifera] 0.978 0.680 0.621 1e-170
449450318 743 PREDICTED: uncharacterized membrane prot 0.954 0.644 0.604 1e-169
225458930 717 PREDICTED: uncharacterized membrane prot 0.972 0.680 0.622 1e-169
356509803 744 PREDICTED: uncharacterized membrane prot 0.982 0.662 0.576 1e-168
297840655 764 hypothetical protein ARALYDRAFT_893642 [ 0.948 0.623 0.624 1e-163
6573289 657 RXW8 [Arabidopsis thaliana] gi|18181939| 0.948 0.724 0.625 1e-162
343455563 1031 At1g58520 [Arabidopsis thaliana] 0.946 0.460 0.627 1e-162
>gi|224067148|ref|XP_002302379.1| predicted protein [Populus trichocarpa] gi|222844105|gb|EEE81652.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/499 (64%), Positives = 389/499 (77%), Gaps = 8/499 (1%)

Query: 2   NYYSSSYLSHQIVYRASTVRKLMNDAENMCQLVKNFSTEEKSKLSLLPC-LCGKPNSFEV 60
           NYY+SSYLSHQIVYR   V+KLM DAE +C  +K      K + SL PC LCG   SF+V
Sbjct: 213 NYYASSYLSHQIVYRCGLVQKLMVDAEKICMRIK---AAPKGQSSLKPCCLCGGSTSFKV 269

Query: 61  LSDESDSVRENIGFDISDLAS-EKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAP 119
           L+DE +SV+++  +   +LA+ + E + AFV FKTRYAA+VA ++L S NPM WVTELAP
Sbjct: 270 LTDEPESVKDSFSYSNLNLATRDNERSAAFVIFKTRYAAVVATQMLQSPNPMSWVTELAP 329

Query: 120 EPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMIVFLAPVAFVQGLTRLHQLSHAFPFLKG 179
           EP+DVLWSNLCIP+RQLW RKIA LLA+I FM++FLAPV FVQGLT+L +LS  FPFL+G
Sbjct: 330 EPHDVLWSNLCIPFRQLWLRKIATLLASIVFMVLFLAPVTFVQGLTQLEKLSQTFPFLRG 389

Query: 180 MFKQKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIKVLSFTIW 239
             KQ  I  ++TGYLPSVILILF Y VPPTMMLFS+VEG VSHSGRKRSAC+K+L FTIW
Sbjct: 390 FLKQDLINHVLTGYLPSVILILFLYTVPPTMMLFSSVEGPVSHSGRKRSACLKILYFTIW 449

Query: 240 NVFFVNVLSGSIMGQLNAISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPL 299
           NVFFVN +SG  +   N +SSV  I  +LA A+P QASFF+TYVLTSGWASL+ E++QP 
Sbjct: 450 NVFFVNHVSGGFLFAFNMLSSVGDIPVELAKAIPNQASFFVTYVLTSGWASLSCEVMQPF 509

Query: 300 GLVYNTMKKCVCRIKEDQPNGFLSFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFV 359
            L+ N +KK + R  ED  +G +SFPYHTEV ++L+FG +GF  SVMAPLILP LLIYF+
Sbjct: 510 SLLCNFLKKHLLRNHEDSSDGLVSFPYHTEVPRVLLFGLIGFTYSVMAPLILPFLLIYFL 569

Query: 360 LAYLVYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALGVFGIKRSTVAFGFTI 419
           LAYLVY+NQI+NVY T YE GG+ WPI HN+TI SLVLTQ+I+LGVFGIK+S VA GFTI
Sbjct: 570 LAYLVYRNQIVNVYITKYEGGGQLWPIVHNTTIFSLVLTQMISLGVFGIKKSPVASGFTI 629

Query: 420 PLIFGTLLFNEYCRQRFFPTFTKMSAQVLTEMDRQDEQGGRMEEIYQQLRSAYCQFRLIS 479
           PLI  TLLFNEYCRQRFFP F K  AQVL EMDR+DEQ GRMEEI+QQL SAYCQ  L S
Sbjct: 630 PLIICTLLFNEYCRQRFFPIFKKNVAQVLLEMDRRDEQSGRMEEIHQQLHSAYCQLPLTS 689

Query: 480 QDLCKSGRMDHQGDQNSIR 498
            + C+S    H+  Q++IR
Sbjct: 690 HEFCES---VHKLCQDNIR 705

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537944|ref|XP_002510037.1| conserved hypothetical protein [Ricinus communis] gi|223550738|gb|EEF52224.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356577692|ref|XP_003556958.1| PREDICTED: uncharacterized membrane protein YLR241W-like [Glycine max] Back     alignment and taxonomy information
>gi|302142147|emb|CBI19350.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449450318|ref|XP_004142910.1| PREDICTED: uncharacterized membrane protein C2G11.09-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225458930|ref|XP_002283520.1| PREDICTED: uncharacterized membrane protein YLR241W-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356509803|ref|XP_003523635.1| PREDICTED: uncharacterized membrane protein YLR241W-like [Glycine max] Back     alignment and taxonomy information
>gi|297840655|ref|XP_002888209.1| hypothetical protein ARALYDRAFT_893642 [Arabidopsis lyrata subsp. lyrata] gi|297334050|gb|EFH64468.1| hypothetical protein ARALYDRAFT_893642 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|6573289|dbj|BAA88270.1| RXW8 [Arabidopsis thaliana] gi|18181939|dbj|BAB83877.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|343455563|gb|AEM36349.1| At1g58520 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
TAIR|locus:5049560931041 RXW8 [Arabidopsis thaliana (ta 0.952 0.459 0.577 2.6e-143
TAIR|locus:2201876762 AT1G10090 "AT1G10090" [Arabido 0.974 0.641 0.525 2.9e-135
TAIR|locus:2102117703 HYP1 "hypothetical protein 1" 0.946 0.675 0.404 6.7e-88
TAIR|locus:2007126711 AT1G69450 [Arabidopsis thalian 0.920 0.649 0.376 6e-80
TAIR|locus:2096991712 AT3G54510 [Arabidopsis thalian 0.914 0.644 0.345 5.4e-63
TAIR|locus:2120673771 AT4G22120 [Arabidopsis thalian 0.872 0.568 0.309 2.5e-58
TAIR|locus:2134882772 AT4G04340 [Arabidopsis thalian 0.962 0.625 0.291 5.3e-56
TAIR|locus:2130130761 AT4G15430 "AT4G15430" [Arabido 0.928 0.612 0.280 6.1e-56
TAIR|locus:2031735806 AT1G32090 "AT1G32090" [Arabido 0.920 0.573 0.285 1.1e-55
TAIR|locus:2008860771 AT1G11960 "AT1G11960" [Arabido 0.916 0.596 0.290 1.6e-54
TAIR|locus:504956093 RXW8 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1401 (498.2 bits), Expect = 2.6e-143, P = 2.6e-143
 Identities = 280/485 (57%), Positives = 345/485 (71%)

Query:     2 NYYSSSYLSHQIVYRASTVRKLMNDAENMCQLVKNFSTEEKSKLSLLPC-LCGKP---NS 57
             NYYSSSY+SHQ+VY    +++L+ DAE MCQ +K+ S E   K SL PC  CG P   +S
Sbjct:   507 NYYSSSYVSHQMVYHNGIIQRLLRDAERMCQTLKHVSPEINCKPSLRPCTFCGGPTATSS 566

Query:    58 FEVLSDESDSVRE-NIG-FDISDLASEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVT 115
             F +LS+E+DSV+   +G   ++   +E+E + AFV+FKTRY A+V +EVL S NPMLWVT
Sbjct:   567 FHILSNEADSVKGMELGELTMTTTTTEQERSAAFVFFKTRYDALVVSEVLQSSNPMLWVT 626

Query:   116 ELAPEPNDVLWSNLCIPYRQLWFRKXXXXXXXXXXXXXXXXPVAFVQGLTRLHQLSHAFP 175
             +LAPEP+DV W NL IPYRQLW RK                PV F+QGLT+L QLSHAFP
Sbjct:   627 DLAPEPHDVYWKNLNIPYRQLWIRKIATLVGAVAFMFVFLIPVTFIQGLTQLVQLSHAFP 686

Query:   176 FLKGMFKQKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIKVLS 235
             FL+G+  + +I Q++TGYLPSVILILF YAVPP MM FS +EG +S S RK+SACIKVL 
Sbjct:   687 FLRGILSKNFINQVITGYLPSVILILFFYAVPPLMMYFSALEGCISRSIRKKSACIKVLY 746

Query:   236 FTIWNVFFVNVLSGSIMGQLNAISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEM 295
             FTIWNVFFVN+LSGS++ QLN  SSV+ I  QLA AVP QA FFMTY  TSGWASLA E+
Sbjct:   747 FTIWNVFFVNILSGSVIRQLNVFSSVRDIPAQLARAVPTQAGFFMTYCFTSGWASLACEI 806

Query:   296 VQPLGLVYNTMKKCVCRIKEDQPNGFLSFPYHTEVSKLLMFGFLGFICSVMXXXXXXXXX 355
             +QP+ L++N + K V +  ED+    L FPYHTE+ +LL+FG LGF  SV+         
Sbjct:   807 MQPMALIWNLVAKVVTK-NEDESYETLRFPYHTEIPRLLLFGLLGFTNSVIAPLILPFLL 865

Query:   356 XXXXXXXXXYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALGVFGIKRSTVAF 415
                      YKNQI+NVY T YESGG++WPI HN+TI SL+LTQIIALG FG+K STVA 
Sbjct:   866 IYFFLAYLIYKNQILNVYITKYESGGQYWPIFHNTTIFSLILTQIIALGFFGLKLSTVAS 925

Query:   416 GFTIPLIFGTLLFNEYCRQRFFPTFTKMSAQVLTEMDRQDEQGGRMEEIYQQLRSAYCQF 475
             GFTIPLI  TLLF+EYCRQRF P F K  AQVL +MDR DE  G+MEE++++L + Y Q 
Sbjct:   926 GFTIPLILLTLLFSEYCRQRFAPIFNKNPAQVLIDMDRADEISGKMEELHKKLHNVYSQI 985

Query:   476 RLISQ 480
              L SQ
Sbjct:   986 PLHSQ 990
GO:0005576 "extracellular region" evidence=ISM
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0016298 "lipase activity" evidence=IEA
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
TAIR|locus:2201876 AT1G10090 "AT1G10090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102117 HYP1 "hypothetical protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007126 AT1G69450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096991 AT3G54510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120673 AT4G22120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134882 AT4G04340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130130 AT4G15430 "AT4G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031735 AT1G32090 "AT1G32090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008860 AT1G11960 "AT1G11960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.II.4159.1
hypothetical protein (691 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
pfam02714325 pfam02714, DUF221, Domain of unknown function DUF2 8e-94
COG5594827 COG5594, COG5594, Uncharacterized integral membran 5e-45
>gnl|CDD|190398 pfam02714, DUF221, Domain of unknown function DUF221 Back     alignment and domain information 
 Score =  287 bits (737), Expect = 8e-94
 Identities = 121/325 (37%), Positives = 178/325 (54%), Gaps = 6/325 (1%)

Query: 88  AFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKIAILLAA 147
           AFV FK++ AA +AA+ L   NP+ W T LAPEP D++W NL +   + W R++ + L  
Sbjct: 1   AFVTFKSQAAAQMAAQALQHHNPLKWPTYLAPEPRDIIWENLSLSRWERWLRRLIVNLLL 60

Query: 148 IAFMIVFLAPVAFVQGLTRLHQLSHAFPFLKGM-FKQKYIKQLVTGYLPSVILILFQYAV 206
              +I +  PVAFV  L+ L  L+  +PFLK +      +  LVTG LP+++L L    +
Sbjct: 61  FLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILDLPPVLLGLVTGLLPTLLLSLLMALL 120

Query: 207 PPTMMLFSTVEGSVSHSGRKRSACIKVLSFTIWNVFFVNVLSGSIMGQLNAI-SSVKIIL 265
           P  +   S ++G  S S  + S   K  +F + NVF V  L+ +    +  I  +   I 
Sbjct: 121 PIILRFLSKLQGHPSRSDVELSVQSKYFAFLVVNVFLVVTLASTASSLITEIIDNPTSIP 180

Query: 266 NQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGL-VYNTMKKCVC---RIKEDQPNGF 321
             LA  +P  ++FF++Y+L  G +  A E++Q   L +Y   +K +    R K ++    
Sbjct: 181 TLLATNLPKASNFFISYILLQGLSGAAGELLQLGPLILYYIRRKFLDKTPRDKWERYTTP 240

Query: 322 LSFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDYESGG 381
            SF Y T     L+   +G I SV+APLILP  L+YF L Y VYK Q++ VY T YESGG
Sbjct: 241 PSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGYFVYKYQLLYVYVTKYESGG 300

Query: 382 KFWPIAHNSTIVSLVLTQIIALGVF 406
            FWP A N  +V L L Q+  +G+F
Sbjct: 301 LFWPRALNRLLVGLYLFQLCLIGLF 325

This family consists of hypothetical transmembrane proteins none of which have any function, the aligned region is at 538 residues at maximum length. Length = 325
>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 502
KOG1134728 consensus Uncharacterized conserved protein [Gener 100.0
COG5594827 Uncharacterized integral membrane protein [Functio 100.0
PF02714325 DUF221: Domain of unknown function DUF221; InterPr 100.0
PF04547452 Anoctamin: Calcium-activated chloride channel; Int 99.02
PF1470385 DUF4463: Domain of unknown function (DUF4463) 98.39
KOG2513647 consensus Protein required for meiotic chromosome 97.83
PF07810111 TMC: TMC domain; InterPro: IPR012496 These sequenc 88.38
KOG0107195 consensus Alternative splicing factor SRp20/9G8 (R 80.83
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=5e-92  Score=769.71  Aligned_cols=480  Identities=39%  Similarity=0.642  Sum_probs=445.0

Q ss_pred             CcCCCCeEEEEEEeecchHHHHHHHHHHHHHHHHhhhh---cc--cCCC--CCcCc-ccc-ccchhhhHHHHHHHHHHhH
Q 010742            2 NYYSSSYLSHQIVYRASTVRKLMNDAENMCQLVKNFST---EE--KSKL--SLLPC-LCG-KPNSFEVLSDESDSVRENI   72 (502)
Q Consensus         2 ~~~~~~~~~v~~~y~~~~l~~L~~~~~~~~~~l~~~~~---~~--~~~p--~~~~~-~~g-~vd~i~~~~~~i~~l~~~i   72 (502)
                      .+||.++.+++++||.+++.++.++++++.+++.+.+.   ..  +.||  ++++| ++| +||++|||++|++++++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~l~~l~~~~~k~~~~~l~~~~~~~~~~~~~rP~~k~~~~~l~gkkvdai~yy~~kl~~l~~~i  292 (728)
T KOG1134|consen  213 LNHPVKVRSHQVVYNESKLSKLLSKLKKLRENKLYKEHKRLKSNPKKRPKRKLGFCGLFGKKVDAIDYYSEKLQELSEDI  292 (728)
T ss_pred             ccCCceeehhHHHhhHHHHHHHHHHHHHHhHHHHHHhhhhhccccccCCcceeeeeeeecceecHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999544332221   11  2555  56777 778 9999999999999999999


Q ss_pred             hhhhhhhhhccccceEEEEeCCHHHHHHHHHHhccCCCCceeeecCCCCCCeecCcccCchhhHHHHHHHHHHHHHHHHH
Q 010742           73 GFDISDLASEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMI  152 (502)
Q Consensus        73 ~~~~~~~~~~~~~~~AFVtF~s~~~A~~~~q~~~~~~p~~~~v~~APeP~DIiW~NL~~~~~~~~~R~~~~~~~~~~l~~  152 (502)
                      +++|+...++++.|+|||||+|+.+|+.|+|.+++.+|.+|.++.||||+||.|+|+.++..+|+.|+++++++++++++
T Consensus       293 ~~~~~~~~~~~~~~~aFVtf~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~  372 (728)
T KOG1134|consen  293 EELRESLYEEKPLPAAFVTFKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLF  372 (728)
T ss_pred             HHHHHHHHhcCCCceEEEEEEeeHHHHHHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHH
Confidence            98887776668999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhcchhhhhhhhHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHhhhcccchhHHHHHHhhh
Q 010742          153 VFLAPVAFVQGLTRLHQLSHAFPFLKGMFKQKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIK  232 (502)
Q Consensus       153 f~~iPva~v~~l~~l~~l~~~~p~l~~~~~~~~~~~~i~~~LPslll~~~~~llP~ii~~ls~~eg~~s~S~~~~~~~~k  232 (502)
                      ||++|+++|++++|++.|++.+||++.+.+.++++++++|+||++++.++++++|+++++++++||++|+|+.|++++.|
T Consensus       373 f~~iPva~V~~l~nl~~l~~~~Pflk~i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k  452 (728)
T KOG1134|consen  373 FWIIPVAFVQALTNLEGLSKVFPFLKPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNK  452 (728)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHh
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHHhhhhHHHHHHH-hhchHHHHHHHHHhcCcchhHHHHHHHHHHHHHhHHHHhchhhHHHHHHHhhhc
Q 010742          233 VLSFTIWNVFFVNVLSGSIMGQLNA-ISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGLVYNTMKKCVC  311 (502)
Q Consensus       233 ~f~F~~~nvflv~~l~~s~~~~l~~-~~~p~~i~~~l~~~lp~~s~FFi~yii~~~~~~~~~~Ll~~~~li~~~~~~~~~  311 (502)
                      +|+|+++|+|++.+++|+.+.++.. +++|.++++.+|.++|++++||++|++++||+|.++||+|+.+|+++.+++.+.
T Consensus       453 ~~~F~~~nvFl~~~l~~sa~~~~~~~l~~p~~i~~~la~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~  532 (728)
T KOG1134|consen  453 YYIFLLVNVFLVVTLSGSALRQLLSILSTPRLIPKLLAAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFL  532 (728)
T ss_pred             HHHHHHhhhHHHhhhhHHHHHHHHHHhcCHhHHHHHHhhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHc
Confidence            9999999999999999999988864 456999999999999999999999999999999999999999999999888765


Q ss_pred             -cCCCCC--CCCC-CCCCchhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhheeeccccCCCCccHHHH
Q 010742          312 -RIKEDQ--PNGF-LSFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDYESGGKFWPIA  387 (502)
Q Consensus       312 -r~~~~~--~~~~-~~f~~~~~y~~~l~~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~esgG~~w~~~  387 (502)
                       ++++++  ++++ +.+++|..||+.+++++|+++||+++|+|+|||++||+++|+|||||++|||.++|||||++||.+
T Consensus       533 ~~t~~~~~e~~~p~~~~~~g~~yP~~~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~~yes~g~~wp~i  612 (728)
T KOG1134|consen  533 KSTPRDREERYEPLSSFYFGTIYPRILLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQKYESGGRFWPDI  612 (728)
T ss_pred             ccchhhhhhhcCCccccchhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeecccccccccchHHH
Confidence             344443  2344 788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHhcccCccccccchhHhhhhccccccCCc-hHHHHH
Q 010742          388 HNSTIVSLVLTQIIALGVFGIKRSTVAFGFTIPLIFGTLLFNEYCRQRFFPTFTKMSAQVLTEMDRQDEQGGR-MEEIYQ  466 (502)
Q Consensus       388 ~~~~~~~l~l~qi~~~g~~~lk~~~~~~~~~ipl~i~t~~f~~~~~~~f~p~~~~~p~~~~~~~d~~d~~~~~-~~~~~~  466 (502)
                      |+++++|++++|++|+|+|++|+++..+.+++|++++|++||.+|+.||.|.+..+|++++..+|+.|+..++ ++...+
T Consensus       613 h~~ii~~l~l~ql~l~gl~~~k~~~~~s~~~~~l~~lTi~~~~~c~~rf~p~f~~~~~~~~~~~d~~~~~~~~~~~~~~~  692 (728)
T KOG1134|consen  613 HRRIIFGLILFQLILFGLFSLKKGAVASVLLFPLIVLTILFHIYCKGRFLPLFIAYPIEEAEVDDTLDEEREPNMENLYN  692 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhhhccccccccchhhhhhccCCccccCCChhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999986655 567788


Q ss_pred             HHHhhcCCCcccccc
Q 010742          467 QLRSAYCQFRLISQD  481 (502)
Q Consensus       467 ~l~~~y~~p~l~~~~  481 (502)
                      .+.++|.||++++.+
T Consensus       693 ~~~~~~~~p~~~~~~  707 (728)
T KOG1134|consen  693 YLKSAYVLPVFLSGS  707 (728)
T ss_pred             cccccccCccccccc
Confidence            899999999999876

>COG5594 Uncharacterized integral membrane protein [Function unknown] Back     alignment and domain information
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length Back     alignment and domain information
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [] Back     alignment and domain information
>PF14703 DUF4463: Domain of unknown function (DUF4463) Back     alignment and domain information
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain [] Back     alignment and domain information
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 60/483 (12%), Positives = 129/483 (26%), Gaps = 180/483 (37%)

Query: 103 EVLHSENPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMIVFLAPVAFVQ 162
            +L  E     +  +    + V  +      R  W      LL+    M+       FV+
Sbjct: 44  SILSKEE----IDHIIMSKDAVSGT-----LRLFW-----TLLSKQEEMVQ-----KFVE 84

Query: 163 GLTRLHQLSHAFPFLKGMFKQKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVE----G 218
            +     L   + FL    K +  +       PS++  ++         L++  +     
Sbjct: 85  EV-----LRINYKFLMSPIKTEQRQ-------PSMMTRMYIEQRDR---LYNDNQVFAKY 129

Query: 219 SVSHSGRKRSACIKVLSFTIW--------NVFFVNVLSGSIM---GQLNAISSVKIILNQ 267
           +VS   R +      L             NV    ++ G  +   G+     +       
Sbjct: 130 NVS---RLQ----PYLKLRQALLELRPAKNV----LIDG--VLGSGK-----TW------ 165

Query: 268 LAAAV----PIQASF-FMTYVLTSGWASLAVEMVQPLGLVYNTMKKCVCRIKEDQPNGFL 322
           +A  V     +Q    F  + L     +    +++ L  +   +          + +   
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT----SRSDHSS 221

Query: 323 SFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYL--VYKNQIINVY------- 373
           +        +  +   L       +      LL+      L  V   +  N +       
Sbjct: 222 NIKLRIHSIQAELRRLL------KSKPYENCLLV------LLNVQNAKAWNAFNLSCKIL 269

Query: 374 -TT------DYESGGKFWPIAHNSTIVSL-------VLTQIIALGVFGIKRSTVAFGFTI 419
            TT      D+ S      I+ +   ++L       +L + +      + R  +    T 
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT---TN 326

Query: 420 PL---IFGTLLFNEYC-----------------------------RQRF-----FPTFTK 442
           P    I    + +                                R+ F     FP    
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 443 MSAQVL----TEMDRQDEQGGRMEEIYQQLRSAYCQFRLISQDLCKSGRMDHQGDQNSIR 498
           +   +L     ++ + D                     ++   L K   ++ Q  +++I 
Sbjct: 387 IPTILLSLIWFDVIKSDVM-------------------VVVNKLHKYSLVEKQPKESTIS 427

Query: 499 IHS 501
           I S
Sbjct: 428 IPS 430

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
2diu_A96 KIAA0430 protein; structural genomics, RRM domain, 93.56
1jmt_A104 Splicing factor U2AF 35 kDa subunit; RRM, RNA spli 91.05
2dit_A112 HIV TAT specific factor 1 variant; structural geno 90.84
2d9o_A100 DNAJ (HSP40) homolog, subfamily C, member 17; RRM 88.57
2dnz_A95 Probable RNA-binding protein 23; RNA recognition m 88.41
3v4m_A105 Splicing factor U2AF 65 kDa subunit; canonical RNA 88.32
3s6e_A114 RNA-binding protein 39; ferredoxin-like, structura 88.12
2e5j_A97 Methenyltetrahydrofolate synthetase domain contain 88.0
3p5t_L90 Cleavage and polyadenylation specificity factor S; 86.73
4fxv_A99 ELAV-like protein 1; RNA recognition motif, putati 86.7
2jrs_A108 RNA-binding protein 39; RNA binding motif of RBM39 86.05
4a8x_A88 RNA-binding protein with serine-rich domain 1; tra 84.67
2dnl_A114 Cytoplasmic polyadenylation element binding protei 84.25
2cqp_A98 RNA-binding protein 12; RNA recognition motif, RRM 84.11
2lkz_A95 RNA-binding protein 5; RRM; NMR {Homo sapiens} 83.98
1whw_A99 Hypothetical protein riken cDNA 1200009A02; RNA re 83.98
2dgp_A106 Bruno-like 4, RNA binding protein; RRM domain, str 83.9
2dgv_A92 HnRNP M, heterogeneous nuclear ribonucleoprotein M 83.74
2x1f_A96 MRNA 3'-END-processing protein RNA15; transcriptio 83.56
1x5t_A96 Splicing factor 3B subunit 4; structure genomics, 83.49
2fc8_A102 NCL protein; structure genomics, RRM_1 domain, str 83.37
2a3j_A127 U1 small nuclear ribonucleoprotein A; computationa 82.28
2fy1_A116 RNA-binding motif protein, Y chromosome, family 1 82.25
1x5s_A102 Cold-inducible RNA-binding protein; structure geno 82.21
3s8s_A110 Histone-lysine N-methyltransferase SETD1A; chromat 82.1
1wg1_A88 KIAA1579 protein, homolog EXC-7; RBD, structural g 81.99
3mdf_A85 Peptidyl-prolyl CIS-trans isomerase E; RRM domain, 81.94
1x5u_A105 Splicing factor 3B subunit 4 (spliceosome associat 81.58
3md1_A83 Nuclear and cytoplasmic polyadenylated RNA-bindin 81.55
1nu4_A97 U1A RNA binding domain; RNA recognition motif, U1 81.46
2cph_A107 RNA binding motif protein 19; RNA recognition moti 81.27
2d9p_A103 Polyadenylate-binding protein 3; RRM domain, struc 81.22
2lxi_A91 RNA-binding protein 10; NMR {Homo sapiens} 81.2
1fj7_A101 Nucleolin RBD1, protein C23; RNP, RRM, RNA binding 81.07
2e44_A96 Insulin-like growth factor 2 mRNA binding protein 80.84
1fxl_A167 Paraneoplastic encephalomyelitis antigen HUD; prot 80.65
2do4_A100 Squamous cell carcinoma antigen recognized by T- c 80.65
2dnh_A105 Bruno-like 5, RNA binding protein; RRM domain, RBD 80.63
2jvr_A111 Nucleolar protein 3; RNA recognition motif, nucleu 80.61
3ns6_A100 Eukaryotic translation initiation factor 3 subuni; 80.46
2dgs_A99 DAZ-associated protein 1; RRM domain, structural g 80.21
1p1t_A104 Cleavage stimulation factor, 64 kDa subunit; RNA r 80.19
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=93.56  E-value=0.1  Score=42.09  Aligned_cols=41  Identities=15%  Similarity=0.180  Sum_probs=34.9

Q ss_pred             ceEEEEeCCHHHHHHHHHHhccCCC--CceeeecCCCCCCeec
Q 010742           86 AVAFVYFKTRYAAIVAAEVLHSENP--MLWVTELAPEPNDVLW  126 (502)
Q Consensus        86 ~~AFVtF~s~~~A~~~~q~~~~~~p--~~~~v~~APeP~DIiW  126 (502)
                      |.|||+|.++.+|+.|.+.++...-  ..+++..|+..+|++=
T Consensus        47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~   89 (96)
T 2diu_A           47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE   89 (96)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred             CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence            9999999999999999988776543  4678999999999864
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 Back     alignment and structure
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A Back     alignment and structure
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A Back     alignment and structure
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Back     alignment and structure
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens} Back     alignment and structure
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Back     alignment and structure
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Back     alignment and structure
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Back     alignment and structure
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Back     alignment and structure
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Back     alignment and structure
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Back     alignment and structure
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Back     alignment and structure
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Back     alignment and structure
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Back     alignment and structure
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A* Back     alignment and structure
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 Back     alignment and structure
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Back     alignment and structure
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens} Back     alignment and structure
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Back     alignment and structure
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Back     alignment and structure
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Back     alignment and structure
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Back     alignment and structure
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A Back     alignment and structure
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
d1wi6a175 Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M 92.47
d1x5sa190 Cold-inducible RNA-binding protein {Human (Homo sa 90.66
d1b7fa285 Sex-lethal protein {Drosophila melanogaster [TaxId 90.25
d1wg1a_88 Probable RNA-binding protein KIAA1579 {Human (Homo 89.05
d1h2vz_93 CBP20, 20KDa nuclear cap-binding protein {Human (H 88.95
d1nu4a_91 Splicesomal U1A protein {Human (Homo sapiens) [Tax 88.89
d1wf2a_98 Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu 88.44
d2cpja186 Non-POU domain-containing octamer-binding protein, 88.39
d2bz2a179 Negative elongation factor E, NELF-E {Human (Homo 88.28
d1x5ua193 Splicing factor 3B subunit 4 {Human (Homo sapiens) 88.21
d1weya_104 Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090 87.6
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 87.59
d1b7fa182 Sex-lethal protein {Drosophila melanogaster [TaxId 87.3
d2dita199 HIV Tat-specific factor 1 {Human (Homo sapiens) [T 86.49
d2cq0a190 Eukaryotic translation initiation factor 3 subunit 86.04
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 85.63
d2adca1109 Polypyrimidine tract-binding protein {Human (Homo 85.62
d2ghpa386 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 85.49
d1fxla285 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 85.44
d2cpfa185 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 85.39
d1x4fa199 Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} 85.33
d2cpza1102 CUG triplet repeat RNA-binding protein 1 {Human (H 85.24
d1cvja180 Poly(A)-binding protein {Human (Homo sapiens) [Tax 84.99
d2ghpa181 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 84.29
d2msta_75 Neural RNA-binding protein Musashi-1 {Mouse (Mus m 83.96
d1whwa_99 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 83.79
d1x4ea172 RNA-binding motif, single-stranded-interacting pro 83.62
d1wf0a_88 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 83.53
d2cqba189 Peptidyl-prolyl cis-trans isomerase E, N-terminal 83.23
d2disa196 Hypothetical protein FLJ20273 {Human (Homo sapiens 83.2
d1hd0a_75 Heterogeneous nuclear ribonucleoprotein d0 {Human 82.77
d1rk8a_88 RNA-binding protein 8 {Fruit fly (Drosophila melan 82.73
d1fxla182 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 82.63
d2cpea1101 RNA-binding protein EWS {Human (Homo sapiens) [Tax 82.54
d1x4ha198 RNA-binding protein 28 {Mouse (Mus musculus) [TaxI 82.42
d2u2fa_85 Splicing factor U2AF 65 KDa subunit {Human (Homo s 81.99
d1x5ta183 Splicing factor 3B subunit 4 {Human (Homo sapiens) 81.64
d1whxa_111 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 81.37
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_104 U2 81.32
d2cpha194 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 81.11
d1p1ta_104 Cleavage stimulation factor, 64 kda subunit {Human 81.08
d2cqga190 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 80.75
d2cpda186 APOBEC1 stimulating protein {Human (Homo sapiens) 80.08
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 80.02
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.47  E-value=0.058  Score=39.48  Aligned_cols=41  Identities=22%  Similarity=0.202  Sum_probs=31.8

Q ss_pred             hccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCC
Q 010742           81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEP  121 (502)
Q Consensus        81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP  121 (502)
                      ..+..|.|||+|.+..+|..|.+.++...  .....|+.||..
T Consensus        29 ~~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d   71 (75)
T d1wi6a1          29 VDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTD   71 (75)
T ss_dssp             EETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred             ecccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence            34568999999999999999998876532  345678888743
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure