Citrus Sinensis ID: 010750

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
MDFVAACKIMKKDKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFSSVSEMLLIKGYDNLDQEKKIAKDVAALPKKSLTLKKESEAALSRKPGKENSFDRDCDSNLNSRNLSQTLNKEKSKKMKWEGLKEIPSINGDDGVSLRMKSPKKPRVSEEISEKEKFKVSEEVSRIDKPKEEGEKNEDGLGNLGGVKALNCVKNAGVGSNLEAVSESRGVNKCITEVPLPRSATLTTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELMGGRSRRRGLGFPMVQIHIQLLSLVQKDMGEESPLSSTSGKHSWLQALSKCVSNSKCPLNDIPSNCFDCGGDGYHQLNGSKKLKLLNFLCDEALGTTVLRNWIDDQNSEFVEKVKESREKFVAAKEKEKKLKQKLQDEVAKAIITNGAPLSISEHEAIVSEIKRKAAEAHSEMTEAKGMAFKSKLRISGFSSFKIS
cccccccccccccccccccccHHHHHHHHHHcHHHHHHccccccccccccccccHHHcccccccccHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHccccccccccHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccc
ccccHHHHccccccccccHHcHHHHHHHccccHHHHHccccccccccccccccHHHHHHccccccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccccccccHHHHHcccHHHHHHHcccccccccccccccccccccHHccHHHHHHHcccHHHHHHccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccEEEEcccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccEccccccHHHHHHHHHHcccccccHHccHHHHHcccccHHcccHHHHHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccEEEc
MDFVAACkimkkdkycpikfchkcllnrygekaedaalldgwncprcrgicncslcmkkrghqptgQLVQAAKATGFSSVSEMLLIKGYDNLDQEKKIAKDVaalpkksltlKKESEaalsrkpgkensfdrdcdsnlnsrnlSQTLNKEKSKKMKWEGLkeipsingddgvslrmkspkkprvseeisekekfkvseevsridkpkeegeknedglgnlggvkalncvknagvgsnleavsesrgvnkcitevplprsatlttvagaeippedvgHALQFLEFCAAFGKVLDLKKGQAECIIRELMggrsrrrglgfpmVQIHIQLLSLVQkdmgeesplsstsgkHSWLQALSKcvsnskcplndipsncfdcggdgyhqlngskKLKLLNFLCDEALGTTVLRNWIDDQNSEFVEKVKESREKFVAAKEKEKKLKQKLQDEVAKAIItngaplsisEHEAIVSEIKRKAAEAHSEMTEAKGMAFKSklrisgfssfkis
MDFVAAckimkkdkycpikFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFSSVSEMLLIKGYDNLDQEKKIAKdvaalpkksltlkkeseaalsrkpgkensfdrdcdsnlnsrnlsqtlnkekskkmkweglkeipsingddgvslrmkspkkprvseeisekekfkvseevsridkpkeegeknedglgnlggVKALNCVKNAGVGSnleavsesrgvnkcitevplprsaTLTTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELMGGRSRRRGLGFPMVQIHIQLLSLVQKDMGEESPLSSTSGKHSWLQALSKCVSNSKCPLNDIPSNCFDCGGDGYHQLNGSKKLKLLNFLCDEALGTTVLRNWIDDQNSEFVEKVKESREKFVAAKEKEKKLKQKLQDEVAKAIitngaplsiseHEAIVSEIKRKAAEAHSEMteakgmafksklrisgfssfkis
MDFVAACKIMKKDKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFSSVSEMLLIKGYDNLDQEKKIAKDVAALPKKSLTLKKESEAALSRKPGKENSFDRDCDSNLNSRNLSQTLNKEKSKKMKWEGLKEIPSINGDDGVSLRMKSPKKPRvseeisekekfkvseevsRIDKPKEEGEKNEDGLGNLGGVKALNCVKNAGVGSNLEAVSESRGVNKCITEVPLPRSATLTTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELMggrsrrrglgFPMVQIHIQLLSLVQKDMGEESPLSSTSGKHSWLQALSKCVSNSKCPLNDIPSNCFDCGGDGYHQLNGSKKLKLLNFLCDEALGTTVLRNWIDDQNSEFVEKVKESREKFVaakekekklkqklqDEVAKAIITNGAPLSISEHEAIVSEIKRKAAEAHSEMTEAKGMAFKSKLRISGFSSFKIS
**FVAACKIMKKDKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFSSVSEMLLIKGYDNL*******************************************************************************************************************************LGGVKALNCVKNAGVGSNLEAVSESRGVNKCITEVPLPRSATLTTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELMGGRSRRRGLGFPMVQIHIQLLSLVQ*****************WLQALSKCVSNSKCPLNDIPSNCFDCGGDGYHQLNGSKKLKLLNFLCDEALGTTVLRNWIDDQN**F*******************************AIIT***************************************************
*DFVAACKIMKKDKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFSSVSEM**********************************************************************************************************************************************************************************LTTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELMGGRSRRRGLGFPMVQIHIQLLSLVQKDM**********GKHSWLQALSKCVSNSKCPLNDIPSNCFDCGGDGYHQLNGSKKLKLLNFLCDEALGTTVLRNWIDDQN*********************************************************************************GFSSFKIS
MDFVAACKIMKKDKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFSSVSEMLLIKGYDNLDQEKKIAKDVAALPKKSLTLKK******************DCDSNLNSRNLSQTLNKEKSKKMKWEGLKEIPSINGDDGVSL**************************************NEDGLGNLGGVKALNCVKNAGVGSNLEAVSESRGVNKCITEVPLPRSATLTTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELMGGRSRRRGLGFPMVQIHIQLLSLVQKD***************WLQALSKCVSNSKCPLNDIPSNCFDCGGDGYHQLNGSKKLKLLNFLCDEALGTTVLRNWIDDQNSEFVEKVKESREKFVAAKEKEKKLKQKLQDEVAKAIITNGAPLSISEHEAIVSEIKR*************GMAFKSKLRISGFSSFKIS
MDFVAACKIMKKDKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFSSVSEMLLIKGY*******************************************************************************************************************************L**LGGVKALNCV*******NLEAVSES*GVNKCITEVPLPRSATLTTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELMGGRSRRRGLGFPMVQIHIQLLSLVQKDMGEESPLSSTSGKHSWLQALSKCVSNSKCPLNDIPSNCFDCGGDGYHQLNGSKKLKLLNFLCDEALGTTVLRNWIDDQNSEFVEKVKESREKFVAAKEKEKKLKQKLQDEVAKAIITNGAPLSISEHEAIVSEIKRKAAEAHSEMTEAKGMAFKSKLRISGFSSFKI*
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDFVAACKIMKKDKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFSSVSEMLLIKGYDNLDQEKKIAKDVAALPKKSLTLKKESEAALSRKPGKENSFDRDCDSNLNSRNLSQTLNKEKSKKMKWEGLKEIPSINGDDGVSLRMKSPKKPRVSEEISEKEKFKVSEEVSRIDKPKEEGEKNEDGLGNLGGVKALNCVKNAGVGSNLEAVSESRGVNKCITEVPLPRSATLTTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELMGGRSRRRGLGFPMVQIHIQLLSLVQKDMGEESPLSSTSGKHSWLQALSKCVSNSKCPLNDIPSNCFDCGGDGYHQLNGSKKLKLLNFLCDEALGTTVLRNWIDDQNSEFVEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNGAPLSISEHEAIVSEIKRKAAEAHSEMTEAKGMAFKSKLRISGFSSFKIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query502 2.2.26 [Sep-21-2011]
Q4KM91377 Cell division cycle-assoc yes no 0.131 0.175 0.530 1e-13
Q32PH1374 Cell division cycle-assoc yes no 0.131 0.176 0.530 1e-13
Q9D0M2382 Cell division cycle-assoc yes no 0.131 0.172 0.530 1e-13
Q9BWT1371 Cell division cycle-assoc no no 0.131 0.177 0.530 1e-13
Q96GN5454 Cell division cycle-assoc no no 0.131 0.145 0.515 3e-13
Q922M5438 Cell division cycle-assoc no no 0.131 0.150 0.5 4e-13
Q4G059438 Cell division cycle-assoc no no 0.131 0.150 0.5 5e-13
>sp|Q4KM91|CDCA7_RAT Cell division cycle-associated protein 7 OS=Rattus norvegicus GN=Cdca7 PE=2 SV=1 Back     alignment and function desciption
 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 42/66 (63%)

Query: 19  KFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFS 78
           +FC  CL NRYGE+ +DA L   W+CP CRGICNCS C ++ G   TG LV  AK  GF 
Sbjct: 301 QFCGPCLRNRYGEEVKDALLDPNWHCPPCRGICNCSFCRQRDGRCATGVLVYLAKYHGFG 360

Query: 79  SVSEML 84
           +V   L
Sbjct: 361 NVHAYL 366
Participates in MYC-mediated cell transformation; induces anchorage-independent growth and clonogenicity in lymphoblastoid cells. Insufficient to induce tumorigenicity when overexpressed but contributes to MYC-mediated tumorigenesis. May play a role as transcriptional regulator.
Rattus norvegicus (taxid: 10116)
>sp|Q32PH1|CDCA7_BOVIN Cell division cycle-associated protein 7 OS=Bos taurus GN=CDCA7 PE=2 SV=1 Back     alignment and function description
>sp|Q9D0M2|CDCA7_MOUSE Cell division cycle-associated protein 7 OS=Mus musculus GN=Cdca7 PE=1 SV=1 Back     alignment and function description
>sp|Q9BWT1|CDCA7_HUMAN Cell division cycle-associated protein 7 OS=Homo sapiens GN=CDCA7 PE=1 SV=1 Back     alignment and function description
>sp|Q96GN5|CDA7L_HUMAN Cell division cycle-associated 7-like protein OS=Homo sapiens GN=CDCA7L PE=1 SV=2 Back     alignment and function description
>sp|Q922M5|CDA7L_MOUSE Cell division cycle-associated 7-like protein OS=Mus musculus GN=Cdca7l PE=2 SV=1 Back     alignment and function description
>sp|Q4G059|CDA7L_RAT Cell division cycle-associated 7-like protein OS=Rattus norvegicus GN=Cdca7l PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
255551390 687 ubiquitin-protein ligase, putative [Rici 0.954 0.697 0.490 1e-117
359488395 740 PREDICTED: uncharacterized protein LOC10 0.950 0.644 0.503 1e-116
298204383 659 unnamed protein product [Vitis vinifera] 0.920 0.701 0.516 1e-115
224092520570 predicted protein [Populus trichocarpa] 0.900 0.792 0.483 1e-109
359491425 653 PREDICTED: uncharacterized protein LOC10 0.940 0.722 0.465 1e-107
297734173 625 unnamed protein product [Vitis vinifera] 0.940 0.755 0.465 1e-107
449439031 637 PREDICTED: uncharacterized protein LOC10 0.970 0.764 0.447 1e-106
22327451572 Zinc-finger domain of monoamine-oxidase 0.882 0.774 0.428 9e-94
10176837544 unnamed protein product [Arabidopsis tha 0.858 0.792 0.425 8e-93
225451978 805 PREDICTED: uncharacterized protein LOC10 0.561 0.350 0.522 2e-72
>gi|255551390|ref|XP_002516741.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223544114|gb|EEF45639.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 270/551 (49%), Positives = 338/551 (61%), Gaps = 72/551 (13%)

Query: 2   DFVAACKIMKKDKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRG 61
           DF A CKI+K +K C IK+CHKCL+NRYGEKAE+ ALLD W CP+CRGICNCS CMKKRG
Sbjct: 61  DFAAECKILKGNKQCTIKYCHKCLMNRYGEKAEEVALLDNWTCPKCRGICNCSFCMKKRG 120

Query: 62  HQPTGQLVQAAKATGFSSVSEMLLIKGYDNLDQEKKIAKDVAALPKKSLTLKKESEAALS 121
           H+PTG LV  AK  GFSSVSE+L IKG +N   ++      A+L K +    KES  A  
Sbjct: 121 HKPTGILVHTAKENGFSSVSELLQIKGPENFACDRFPNNTGASLNKPASA--KESIIASP 178

Query: 122 RKPGKENSFDRDCDSNLNSRNLSQTLNKEKSKKMKWEGLKEIPSINGDDGVSLRMKSPKK 181
           RK GKENS D  CDS+  S   S   NK+K KK K EGL ++ S        LR  S KK
Sbjct: 179 RKLGKENSLDGKCDSH--SPKSSPVSNKKKHKKAKSEGLHDVNS--------LRDSSRKK 228

Query: 182 PRVSEEI-SEKEKFKVSEEVSRI----------DKPKEEGEKNE--DGLGNLG------- 221
           PR +EE+ + K K    +E S +          D PK+E +KN+  +G+  +G       
Sbjct: 229 PRFTEEVLTNKMKINGKDEDSLVKTCKSKIEFKDIPKKEVKKNDKVEGVIAVGKKFKKQS 288

Query: 222 ---GVKALNCVKNAGVGSNLEA----------VSESRGVNKCIT---------------- 252
                K +  VK      N +            +E R    C +                
Sbjct: 289 QDVSKKEVINVKAESENENFQPQISRNVVCLIANEKRDTGNCKSIGVPGGVKCNVDKGTI 348

Query: 253 ---------EVPLPRSATLTTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLKKGQAECII 303
                    ++ LP    LT VAG E+P ED GHALQF EFCAAF +VLDL+KGQAE +I
Sbjct: 349 ELQSKQTEDDIQLPSGTCLTNVAGIELPHEDAGHALQFFEFCAAFAEVLDLRKGQAEAVI 408

Query: 304 RELMGGRSRRRGLGFPMVQIHIQLLSLVQKDMGEESP-LSSTSGKHSWLQALSKCVSNSK 362
           RE++ GR  RR     +VQ  I+LLSL+ +DMGEESP LS+ +G+ SWL+A  KCVS+ K
Sbjct: 409 REIIFGRKARRSHSSLLVQFQIKLLSLILEDMGEESPTLSTANGQTSWLKAFGKCVSDRK 468

Query: 363 CPLNDIPSNCFDCGGDGYHQLNGSKKLKLLNFLCDEALGTTVLRNWIDDQNSEFVEKVKE 422
               + PS+CFD G + Y  LN S+K KLLNFLCDEAL T  LR+WIDD+NS+FVEK KE
Sbjct: 469 FMSKEFPSDCFDRGNERYDMLNTSEKFKLLNFLCDEALNTKDLRSWIDDRNSKFVEKEKE 528

Query: 423 SREKFVAAKEKEKKLKQKLQDEVAKAIIT-NGAPLSISEHEAIVSEIKRKAAEAHSEMTE 481
           ++EK +AAK+KEK LKQK+ DEVAKAII  +GAP S+SEHEAIVS+IK++AA+AH EM  
Sbjct: 529 AKEKVLAAKDKEKNLKQKVHDEVAKAIIAKSGAPFSVSEHEAIVSQIKKEAAQAHVEMMA 588

Query: 482 AKGMAFKSKLR 492
           A GM  K + R
Sbjct: 589 AVGMVPKKRQR 599

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359488395|ref|XP_002279583.2| PREDICTED: uncharacterized protein LOC100265150 [Vitis vinifera] Back     alignment and taxonomy information
>gi|298204383|emb|CBI16863.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224092520|ref|XP_002309643.1| predicted protein [Populus trichocarpa] gi|222855619|gb|EEE93166.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359491425|ref|XP_002275427.2| PREDICTED: uncharacterized protein LOC100242396 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734173|emb|CBI15420.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449439031|ref|XP_004137291.1| PREDICTED: uncharacterized protein LOC101206502 [Cucumis sativus] Back     alignment and taxonomy information
>gi|22327451|ref|NP_198685.2| Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|20147346|gb|AAM10386.1| AT5g38690/MBB18_24 [Arabidopsis thaliana] gi|23463059|gb|AAN33199.1| At5g38690/MBB18_24 [Arabidopsis thaliana] gi|332006967|gb|AED94350.1| Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|10176837|dbj|BAB10159.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225451978|ref|XP_002279849.1| PREDICTED: uncharacterized protein LOC100265236 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
TAIR|locus:2159828572 AT5G38690 "AT5G38690" [Arabido 0.466 0.409 0.453 6.5e-83
TAIR|locus:2019584541 AT1G67270 "AT1G67270" [Arabido 0.472 0.438 0.427 1.2e-73
UNIPROTKB|B4DLP8329 CDCA7 "cDNA FLJ55101, highly s 0.131 0.200 0.530 3e-12
UNIPROTKB|Q32PH1374 CDCA7 "Cell division cycle-ass 0.131 0.176 0.530 3.8e-12
RGD|1309363377 Cdca7 "cell division cycle ass 0.131 0.175 0.530 3.9e-12
MGI|MGI:1914203382 Cdca7 "cell division cycle ass 0.131 0.172 0.530 4.1e-12
UNIPROTKB|Q9BWT1371 CDCA7 "Cell division cycle-ass 0.131 0.177 0.530 4.8e-12
UNIPROTKB|B4DV66406 CDCA7 "Cell division cycle-ass 0.131 0.162 0.530 6.3e-12
UNIPROTKB|F1NE36355 CDCA7L "Uncharacterized protei 0.131 0.185 0.5 1.2e-11
ZFIN|ZDB-GENE-050417-29408 cdca7a "cell division cycle as 0.131 0.161 0.515 3.9e-11
TAIR|locus:2159828 AT5G38690 "AT5G38690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 510 (184.6 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
 Identities = 108/238 (45%), Positives = 146/238 (61%)

Query:   253 EVPLPRSATLTTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELMXXXXX 312
             E+ +P+     TV+G ++ PED G+  QFLEFC+AFGK LDL+KGQAEC+IRE++     
Sbjct:   251 EIKIPQGNISITVSGIDLAPEDAGNVFQFLEFCSAFGKALDLRKGQAECVIREMLSGRSK 310

Query:   313 XXXXXFPMVQIHIQLLSLVQKDMGEESP-LSSTSGKHSWLQALSKCVSNSKCPLNDIPSN 371
                    + Q+ IQLL+++ +D GE S  LS+T    SW   + +C+S S+  L+D P  
Sbjct:   311 RRQQYSTLTQMIIQLLTVILEDRGETSVCLSATDP--SWFTTIGECLSESEVKLDDFPPE 368

Query:   372 CFDCGGDGYHQLNGSKKLKLLNFLCDEALGTTVLRNWIDDQNSEFVEKVKESREKFVXXX 431
              F+ G   Y +LN SK+LKLLNFLCDE LGT V+RN ID QN E VE+ KE++EK     
Sbjct:   369 MFEKGISQYEKLNSSKRLKLLNFLCDETLGTLVMRNCIDSQNIESVERKKEAKEKINAAK 428

Query:   432 XXXXXXXXXXXDEVAKAI-ITNGAPLSISEHEAIVSEIKRKAAEAHSEMTEAKGMAFK 488
                        DE+A+A+   NG PL I+EH+AIVS I  +  E +SEM  A  M  K
Sbjct:   429 DKEKQLKQKLQDELAQAVKAKNGIPLLITEHDAIVSRINAETQEVYSEMQNAIDMLSK 486
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2019584 AT1G67270 "AT1G67270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B4DLP8 CDCA7 "cDNA FLJ55101, highly similar to Homo sapiens cell division cycle associated 7 (CDCA7), transcript variant 2, mRNA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q32PH1 CDCA7 "Cell division cycle-associated protein 7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1309363 Cdca7 "cell division cycle associated 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914203 Cdca7 "cell division cycle associated 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BWT1 CDCA7 "Cell division cycle-associated protein 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4DV66 CDCA7 "Cell division cycle-associated protein 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NE36 CDCA7L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-29 cdca7a "cell division cycle associated 7a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVIII.1707.1
annotation not avaliable (532 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
pfam10497105 pfam10497, zf-4CXXC_R1, Zinc-finger domain of mono 3e-35
smart0057163 smart00571, DDT, domain in different transcription 1e-09
>gnl|CDD|220784 pfam10497, zf-4CXXC_R1, Zinc-finger domain of monoamine-oxidase A repressor R1 Back     alignment and domain information 
 Score =  126 bits (319), Expect = 3e-35
 Identities = 47/87 (54%), Positives = 55/87 (63%), Gaps = 3/87 (3%)

Query: 1   MDFVAACKIMKKDKYC---PIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCM 57
           +D   +CK  KK K C     +FC KCL NRYGE A++AA    W CP CRGICNCS C 
Sbjct: 18  LDLKTSCKDKKKGKECHGVRGQFCGKCLRNRYGENADEAAKDPDWICPPCRGICNCSFCR 77

Query: 58  KKRGHQPTGQLVQAAKATGFSSVSEML 84
           KKRG  PTG L+  AKA G+ SV+  L
Sbjct: 78  KKRGLSPTGILIHLAKAYGYDSVAHYL 104

R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type. Length = 105
>gnl|CDD|214726 smart00571, DDT, domain in different transcription and chromosome remodeling factors Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 502
PF10497105 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida 99.98
smart0057163 DDT domain in different transcription and chromoso 99.51
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 99.4
PF0279161 DDT: DDT domain; InterPro: IPR004022 This domain i 99.18
PF1561250 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 98.21
KOG1356 889 consensus Putative transcription factor 5qNCA, con 96.63
COG5432391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 95.24
KOG1245 1404 consensus Chromatin remodeling complex WSTF-ISWI, 94.57
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 88.86
cd0016245 RING RING-finger (Really Interesting New Gene) dom 88.04
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 86.6
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 86.26
KOG0287442 consensus Postreplication repair protein RAD18 [Re 85.76
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 85.45
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 85.02
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 84.84
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 84.74
PF1463444 zf-RING_5: zinc-RING finger domain 84.43
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 80.98
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 80.47
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression Back     alignment and domain information 
Probab=99.98  E-value=2.1e-33  Score=244.77  Aligned_cols=83  Identities=48%  Similarity=0.976  Sum_probs=78.3

Q ss_pred             hhhhcccCccc--------------ccc---ccccchhHHhhhhccCHHHhhcCCCccCCCCCCcccCccccccCCCCCc
Q 010750            3 FVAACKIMKKD--------------KYC---PIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPT   65 (502)
Q Consensus         3 f~~sChqcr~~--------------~~C---~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRgiCNCS~Crrk~G~~PT   65 (502)
                      .+.+|||||++              ..|   +++||+.||+|||||++++++++++|+||+||||||||+|||++|+.||
T Consensus         6 ~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~g~~PT   85 (105)
T PF10497_consen    6 NGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKRGWAPT   85 (105)
T ss_pred             CCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccCCCCCc
Confidence            57899999973              445   8999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhCchhHHHHHH
Q 010750           66 GQLVQAAKATGFSSVSEMLL   85 (502)
Q Consensus        66 G~l~~~ak~~G~~SV~~yL~   85 (502)
                      |+|+|.|+++||+||||||+
T Consensus        86 g~l~~~a~~~G~~sv~~~L~  105 (105)
T PF10497_consen   86 GILYHKAKALGFKSVAHYLI  105 (105)
T ss_pred             HHHHHHHHHhChhHHHHHhC
Confidence            99999999999999999995

This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
>smart00571 DDT domain in different transcription and chromosome remodeling factors Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain Back     alignment and domain information
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B Back     alignment and domain information
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 72/473 (15%), Positives = 136/473 (28%), Gaps = 153/473 (32%)

Query: 107 KKSLTLKKESEAALSRKPGKENSFD------RDCDS---------NLNSR---NLSQTLN 148
           K  + L    +  LS K   +  F       ++C+S          L  +   N +   +
Sbjct: 163 KTWVAL----DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 149 KEKSKKMKWEGLKEIPSINGDDGVSLR--MKSPKKPR---VSEEISEKE---KFKVSEEV 200
              + K++   ++            LR  +KS        V   +   +    F +S   
Sbjct: 219 HSSNIKLRIHSIQA----------ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--- 265

Query: 201 SRI-----DKPKEEGEKNEDGLGNLGGVKALNCVKNAGVGSNLEAVSESRGV-NKCITEV 254
            +I      K      +  D L           + +  +   L    E + +  K +   
Sbjct: 266 CKILLTTRFK------QVTDFLSAATTTHI--SLDHHSMT--LTP-DEVKSLLLKYLDCR 314

Query: 255 P--LPRSATLT-----TVAGAEIPPEDVGHALQFLE-FCAAFGKVLDLKKGQAECIIREL 306
           P  LPR    T     ++    I  + +     +    C     +++         +  L
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESS-------LNVL 366

Query: 307 MGGRSRRR--GLG-FPM-VQIHIQLLS-----------------LVQKDMGEESPLSSTS 345
                R+    L  FP    I   LLS                 L +  + E+ P  ST 
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 346 GKHSWLQALSKCVSNSKCPLNDI------PSNCFDCGG------D-------GYH--QLN 384
              S +    K    ++  L+            FD         D       G+H   + 
Sbjct: 427 SIPS-IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 385 GSKKLKL-------LNFL------------CDEALGTTVL-----RNWIDDQNSEFVEKV 420
             +++ L         FL               ++  T+      + +I D + ++   V
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545

Query: 421 KESREKFVAAKEKEKKLKQKLQDEVAKAIITNGAPLSISEHEAIVSEIKRKAA 473
             +   F+   E E  +  K  D +  A++         E EAI  E  ++  
Sbjct: 546 N-AILDFLPKIE-ENLICSKYTDLLRIALMA--------EDEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 93.71
2ecw_A85 Tripartite motif-containing protein 30; metal bind 93.56
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 93.3
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 93.12
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 93.04
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 92.62
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 92.59
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 92.53
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 92.48
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 92.44
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 92.43
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 92.2
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 92.14
2ysl_A73 Tripartite motif-containing protein 31; ring-type 92.12
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 92.02
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 92.01
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 91.87
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 91.76
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 91.72
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 91.71
1z6u_A150 NP95-like ring finger protein isoform B; structura 91.63
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 91.47
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 91.26
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 90.94
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 90.71
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 89.84
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 89.81
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 89.61
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 89.59
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 89.33
2ect_A78 Ring finger protein 126; metal binding protein, st 89.15
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 88.64
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 88.39
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 87.9
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 87.87
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 87.86
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 87.83
2ysj_A63 Tripartite motif-containing protein 31; ring-type 87.77
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 87.63
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 87.26
2ecm_A55 Ring finger and CHY zinc finger domain- containing 87.06
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 86.72
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 86.5
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 86.43
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 85.58
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 85.11
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 83.66
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 83.66
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 82.45
2ea5_A68 Cell growth regulator with ring finger domain prot 81.44
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 80.22
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
Probab=93.71  E-value=0.029  Score=47.91  Aligned_cols=40  Identities=23%  Similarity=0.597  Sum_probs=30.3

Q ss_pred             hhcccCcc------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCCCccc
Q 010750            5 AACKIMKK------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICN   52 (502)
Q Consensus         5 ~sChqcr~------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRgiCN   52 (502)
                      ..|.+|..      .-.|++.||..||.....        .....||.||....
T Consensus        53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~   98 (124)
T 3fl2_A           53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFR--------AQVFSCPACRYDLG   98 (124)
T ss_dssp             TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH--------TTCCBCTTTCCBCC
T ss_pred             CCCCcCChHHcCcEEeeCCCcccHHHHHHHHh--------HCcCCCCCCCccCC
Confidence            35888874      256999999999997763        34458999997553
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 93.61
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 93.09
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 92.91
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 92.55
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 90.88
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 90.4
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 90.11
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 89.05
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 89.02
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 88.47
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 86.77
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 85.77
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 84.81
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 83.58
d2c2la280 STIP1 homology and U box-containing protein 1, STU 81.55
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.018  Score=46.28  Aligned_cols=40  Identities=25%  Similarity=0.594  Sum_probs=29.0

Q ss_pred             hcccCcc------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCCCcc
Q 010750            6 ACKIMKK------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGIC   51 (502)
Q Consensus         6 sChqcr~------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRgiC   51 (502)
                      .|.+|..      ...|++.||..||...+..      ....+.||.||...
T Consensus        23 ~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~   68 (103)
T d1jm7a_          23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQ------KKGPSQCPLCKNDI   68 (103)
T ss_dssp             SCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHS------SSSSCCCTTTSCCC
T ss_pred             CCCccCchhCCeEEcCCCCchhhHHHHHHHHH------CCCCCcCcCCCCcC
Confidence            5888874      2459999999999865421      23456899999754
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure