Citrus Sinensis ID: 010757

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
Protein Sequence
MLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKIVYK
Secondary Structure (PSIPRED)
cHHHHHHHcccccccccccccHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEccccccccccccccEEEEEEEEEccccEEEEcccEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccHccccccccccHHHHHHHHHHHHccHHHHHHHHcccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccHcccccHHHHHccHHHHHHHHHcccccccccHHHccHccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEEEcccccEEEEEEEEEEHHHHHHcccccccccccccEEEEEEEEEccccEEEEccEEEEEc
Coil and Loop (DISEMBL)
MLNILWAvggggataiaggftreSFMNEAFLRMTSAEQVKLFsatpnsipaetFEAYGVALALVAQAFvgkqphliaDADNMFKHLqqnkvptlrdlgsiyipleKHEMEFALERGLCSLLVGKLdecrlwlgldsdkspyrnpaiVDFVlenskeaddndlpGLCKLLETWLAevvfprfrdtsdirfklgdyyddptVLRYLERlegngsspLAAAAAIVRIGATEATAVLDHVKSSTIQALQKvfplgqgdkaVKYVehgetydpvpvveteesltsdqnnfafttdaygtsssddihgeqsiTDKIKDVSVKIMCAGVAIGLVTLVGlkylptrnissVQQKEIGlakasdiidagplldeklgqelPRMDARLAEDIVRKWQniksqafgpdhslgklpevldgQMLKVWTDRASEIAQLGWTYDYSLLNLTIDsvtlsqegRHAWVEATVKESARltdtvhpencdekiSTYTTRYElsstksgwritdgskivyk
Flexible Loop (DISEMBL)
MLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLgldsdkspyrnPAIVDFVLENSKEADDNDLPGLCKLLETWLAEvvfprfrdtsdirfklgdyyddpTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAygtsssddihgEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIksqafgpdhslgkLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKEsarltdtvhpencdekistyttryelsstksgwritdgskivyk
Low Complexity Region (SEG)
MLNILWavggggataiaggFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLaaaaaIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKIVYK
Disordered region (IsUnstruct)
**NILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVV************FAFT*****************ITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELS****GWRI*********
Disordered Region (DISOPRED)
MLNILWAVG*********GFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECR*******************************DLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVL**************************************************************************************************************DVSVKIMCAGVAIGLVTLVGLKY*******************************************LAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLS*EGRHAWVEATVKESARLTDTV*******KISTYTTRYELSSTKSGWRITDGSKIVYK
Disordered Region (DISEMBL)
MLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKIVYK
Disordered Region (DISPRO)
MLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLE************************************************************************************************SITDKIKDVSVKIMCAGVAIGLVTLVGLKYLP**********************************LPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKIVYK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKIVYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	502	2.2.26 [Sep-21-2011]
Q9FIG9	801	Protein ACCUMULATION AND	yes	no	0.962	0.602	0.570	1e-155
Q8VY16	819	Plastid division protein	no	no	0.239	0.146	0.344	2e-07

>sp|Q9FIG9|ARC6_ARATH Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic OS=Arabidopsis thaliana GN=ARC6 PE=1 SV=1

 Score =  550 bits (1416), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/514 (57%), Positives = 364/514 (70%), Gaps = 31/514 (6%)

Query: 3   NILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALA 62
           NILW+VGGGGA+A+ GG TRE FMNEAFLRMT+AEQV LF ATP++IPAE+FE Y VALA
Sbjct: 296 NILWSVGGGGASALVGGLTREKFMNEAFLRMTAAEQVDLFVATPSNIPAESFEVYEVALA 355

Query: 63  LVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLV 122
           LVAQAF+GK+PHL+ DAD  F+ LQQ KV  +     +Y      E++F LERGLC+LL+
Sbjct: 356 LVAQAFIGKKPHLLQDADKQFQQLQQAKVMAMEIPAMLYDTRNNWEIDFGLERGLCALLI 415

Query: 123 GKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFR 182
           GK+DECR+WLGLDS+ S YRNPAIV+FVLENS   D++DLPGLCKLLETWLA VVFPRFR
Sbjct: 416 GKVDECRMWLGLDSEDSQYRNPAIVEFVLENSNRDDNDDLPGLCKLLETWLAGVVFPRFR 475

Query: 183 DTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQ 242
           DT D +FKLGDYYDDP VL YLER+E    SPLAAAAA+ RIGA       +HVK+S +Q
Sbjct: 476 DTKDKKFKLGDYYDDPMVLSYLERVEVVQGSPLAAAAAMARIGA-------EHVKASAMQ 528

Query: 243 ALQKVFPLGQGDK-------------AVKYVEHGETYDPVPVVETEESLTSDQNNFAFTT 289
           ALQKVFP    D+             +V  V +    D  P V   E++   +N   F T
Sbjct: 529 ALQKVFPSRYTDRNSAEPKDVQETVFSVDPVGNNVGRDGEPGVFIAEAVRPSEN---FET 585

Query: 290 DAYGT------SSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSV 343
           + Y        SS D+   E S+ D +K+ SVKI+ AGVAIGL++L   KY   ++ SS 
Sbjct: 586 NDYAIRAGVSESSVDETTVEMSVADMLKEASVKILAAGVAIGLISLFSQKYF-LKSSSSF 644

Query: 344 QQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKL 403
           Q+K++  +  SD+   G +  +   + LPRMDAR AE+IV KWQ IKS AFGPDH +  L
Sbjct: 645 QRKDMVSSMESDVATIGSVRADD-SEALPRMDARTAENIVSKWQKIKSLAFGPDHRIEML 703

Query: 404 PEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLT 463
           PEVLDG+MLK+WTDRA+E AQLG  YDY+LL L++DSVT+S +G  A VEAT++ESA L+
Sbjct: 704 PEVLDGRMLKIWTDRAAETAQLGLVYDYTLLKLSVDSVTVSADGTRALVEATLEESACLS 763

Query: 464 DTVHPENCDEKISTYTTRYELSSTKSGWRITDGS 497
           D VHPEN    + TYTTRYE+  +KSGW+IT+GS
Sbjct: 764 DLVHPENNATDVRTYTTRYEVFWSKSGWKITEGS 797

Component of the plastid division machinery. Involved in the initiation of proplastid and plastid division (including chloroplasts, statoliths and leukoplasts). Promotes the assembly and/or stabilization of the plastid-dividing FtsZ ring, functioning as an antagonistic regulator of FtsZ dynamics against CDP1. Relays plastid division site position between stroma and outer surface via interactions with the stromal FtsZ ring and the outer membrane PDV2 that recruits cytoplasmic ARC5 ring. Required for plastid equatorial positioning of PDV2 and ARC5. May contribute to gravitropism in stems and hypocotyls. Seems to influence stromule (stroma-filled tubular extensions of the plastid envelope membrane) length and frequency.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY16|CDP1_ARATH Plastid division protein CDP1, chloroplastic OS=Arabidopsis thaliana GN=CDP1 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 374 MDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSL 433
           MD   AE++VR+W+N+K++A GP H +  L EVLD  ML  W   A         + + L
Sbjct: 688 MDTEEAEELVRQWENVKAEALGPTHQVYSLSEVLDESMLVQWQTLAQTAEAKSCYWRFVL 747

Query: 434 LNLTIDSVTLSQE---GRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSG 490
           L+L +    + ++   G  A +EA ++E+A L D   P+N  +  STY  RY L   + G
Sbjct: 748 LHLEVLQAHIFEDGIAGEAAEIEALLEEAAELVDESQPKNA-KYYSTYKIRYILKKQEDG 806

Query: 491 -WRIT 494
            W+  
Sbjct: 807 LWKFC 811

Component of the plastid division machinery required for PDV1 localization to constriction sites. Involved in chloroplast division site placement. Seems to inhibit FtsZ assembly, functioning as an antagonistic regulator of FtsZ dynamics against ARC6.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
224085790	768	predicted protein [Populus trichocarpa]	0.936	0.611	0.661	0.0
225427387	800	PREDICTED: protein ACCUMULATION AND REPL	0.976	0.612	0.668	1e-176
147860071	789	hypothetical protein VITISV_009566 [Viti	0.976	0.621	0.663	1e-174
356562383	793	PREDICTED: protein ACCUMULATION AND REPL	0.982	0.621	0.618	1e-170
357438161	796	hypothetical protein MTR_1g023310 [Medic	0.982	0.619	0.637	1e-170
255538836	781	heat shock protein binding protein, puta	0.964	0.619	0.624	1e-170
449520173	524	PREDICTED: LOW QUALITY PROTEIN: protein	0.962	0.921	0.648	1e-167
356553409	794	PREDICTED: protein ACCUMULATION AND REPL	0.982	0.620	0.626	1e-167
449470114	786	PREDICTED: protein ACCUMULATION AND REPL	0.952	0.608	0.639	1e-166
33436339	801	division protein [Arabidopsis thaliana]	0.962	0.602	0.568	1e-156

>gi|224085790|ref|XP_002307697.1| predicted protein [Populus trichocarpa] gi|222857146|gb|EEE94693.1| predicted protein [Populus trichocarpa]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/496 (66%), Positives = 381/496 (76%), Gaps = 26/496 (5%)

Query: 3   NILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALA 62
           N LWAVGGGGA  +AGGFTRE FMNEAFLRMT+AEQV LF  TP++IPA+ FE YGVALA
Sbjct: 295 NTLWAVGGGGAAPVAGGFTREDFMNEAFLRMTAAEQVDLFVTTPSNIPAQNFEVYGVALA 354

Query: 63  LVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLV 122
           LVAQAF+GK+PHLI DADN+F  LQQ KV     L  ++  +E  +++F LERGLCSLLV
Sbjct: 355 LVAQAFIGKKPHLITDADNLFGQLQQIKVTNQGSLVPVFGSMENRDIDFGLERGLCSLLV 414

Query: 123 GKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFR 182
           G+LDEC  W+GLDSD SPYRNP I DF++ENSK+ DD++LPGLCKLLETWL EVVFPRFR
Sbjct: 415 GELDECCKWMGLDSDNSPYRNPPIFDFIMENSKDDDDSNLPGLCKLLETWLMEVVFPRFR 474

Query: 183 DTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQ 242
           DT D  FKLGDYYDDPTVLRYLER EG G SPLAAAAAIVRIGA EATAV+DHVK+S IQ
Sbjct: 475 DTKDREFKLGDYYDDPTVLRYLERQEGGGRSPLAAAAAIVRIGA-EATAVIDHVKASAIQ 533

Query: 243 ALQKVFPLGQGDKAVKYVEH-GETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIH 301
           ALQKVFPLG  D   ++ E+ G   +P  +                         SD++ 
Sbjct: 534 ALQKVFPLGHKDMGAEFHENDGINSNPEEIY------------------------SDEVP 569

Query: 302 GEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGP 361
            E+ IT+KIKD S+KIMCAGVAIGL+TL GLKY P R  S ++QKEIG A ASD I+   
Sbjct: 570 EEELITEKIKDASIKIMCAGVAIGLLTLAGLKYFPPRTGSFIRQKEIGSAMASDTINLNS 629

Query: 362 LLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASE 421
            +DE++ +ELPRMDAR AEDIVRKWQNIKSQAFGPDH L KLPEVLD QMLK+WTDRA+E
Sbjct: 630 AVDEQISEELPRMDARFAEDIVRKWQNIKSQAFGPDHCLAKLPEVLDSQMLKIWTDRAAE 689

Query: 422 IAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTR 481
           IA LGW Y+Y LL+LTIDSVT+S +G  A VEAT+KES RLTD VHPEN    + TYTTR
Sbjct: 690 IAHLGWVYEYMLLDLTIDSVTVSVDGLSAVVEATLKESTRLTDEVHPENNASNVKTYTTR 749

Query: 482 YELSSTKSGWRITDGS 497
           YELS + SGW+IT+G+
Sbjct: 750 YELSCSNSGWKITEGA 765

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427387|ref|XP_002262674.1| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Vitis vinifera] gi|296088380|emb|CBI37371.3| unnamed protein product [Vitis vinifera]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 332/497 (66%), Positives = 407/497 (81%), Gaps = 7/497 (1%)

Query: 3   NILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALA 62
           NILWAVGGGGA A+AGGFTRE FMNEAFL MT+AEQV LF+ATP++IPAE+FE YGVALA
Sbjct: 305 NILWAVGGGGAAAVAGGFTREDFMNEAFLCMTAAEQVNLFAATPSNIPAESFEVYGVALA 364

Query: 63  LVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLV 122
           LVAQAFVGK+PHLI DADN+F+ LQQ K+ T  +  S Y P +  E++FALERGLCSLLV
Sbjct: 365 LVAQAFVGKKPHLIQDADNLFQQLQQTKIMTPGNPVSAYTPGQNSEIDFALERGLCSLLV 424

Query: 123 GKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDND-LPGLCKLLETWLAEVVFPRF 181
           G++DECR WLGLD+  SPYR+P+IV+FVLENSK+  DND LPGLCKLLETWL EVVFPRF
Sbjct: 425 GEIDECRSWLGLDNHSSPYRDPSIVEFVLENSKDDHDNDLLPGLCKLLETWLMEVVFPRF 484

Query: 182 RDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTI 241
           RDT  ++FKLGDYYDDPTVLRYLERLEG G SPLAAAAAI RI   EATAVLD+VK+S I
Sbjct: 485 RDTKCVQFKLGDYYDDPTVLRYLERLEGVGGSPLAAAAAIARI-GAEATAVLDNVKASAI 543

Query: 242 QALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSD-QNNFAFTTDAYGTSSSDDI 300
           QALQKVFP+  G++ ++  + G   + VPVVE+EE L +  +++ A   +    +SSD+I
Sbjct: 544 QALQKVFPVDHGNENLRREDSG-INNSVPVVESEEPLQNPARDDSANIAEIPKENSSDEI 602

Query: 301 HGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAG 360
           + ++ IT+KIKD SVKIMC GV +GL+TL+GLKYLP +N SS+ +KE+G A ASD+ + G
Sbjct: 603 YEQKLITEKIKDASVKIMCGGVVVGLMTLIGLKYLPAKNNSSILRKEVGSAMASDVTNVG 662

Query: 361 PLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRAS 420
            + +    +E+PRMDAR AE +VRKWQ+IKSQA GPDH LGKLPEVLDGQMLK+WTDRA+
Sbjct: 663 LVEN---SEEVPRMDARFAEGLVRKWQSIKSQALGPDHCLGKLPEVLDGQMLKIWTDRAA 719

Query: 421 EIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTT 480
           +IAQ GW ++Y+LLNLTIDSVT+S +GR A VEAT++ESARLTDTVHPE+ D   +TYTT
Sbjct: 720 DIAQHGWFWEYTLLNLTIDSVTVSLDGRRAMVEATLEESARLTDTVHPEHNDSYSTTYTT 779

Query: 481 RYELSSTKSGWRITDGS 497
           RYE+S   SGW+IT+G+
Sbjct: 780 RYEMSCNSSGWKITEGA 796

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860071|emb|CAN78894.1| hypothetical protein VITISV_009566 [Vitis vinifera]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 330/497 (66%), Positives = 405/497 (81%), Gaps = 7/497 (1%)

Query: 3   NILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALA 62
           NILWAVGGGGA A+AGGFTRE FMNEAFL MT+AEQV LF+ATP++IPAE+FE YGVALA
Sbjct: 294 NILWAVGGGGAAAVAGGFTREDFMNEAFLCMTAAEQVNLFAATPSNIPAESFEVYGVALA 353

Query: 63  LVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLV 122
           LVAQAFVGK+PHLI DADN+F+ LQQ K+ T  +  S Y P +  E++FALERGLCSLLV
Sbjct: 354 LVAQAFVGKKPHLIQDADNLFQQLQQTKIXTPGNPVSAYTPGQNSEIDFALERGLCSLLV 413

Query: 123 GKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDND-LPGLCKLLETWLAEVVFPRF 181
           G++DECR WLGLD+  SPYR+P+IV+FVLENSK+  DND LPGLCKLLETWL EVVFPRF
Sbjct: 414 GEIDECRSWLGLDNHSSPYRDPSIVEFVLENSKDDHDNDLLPGLCKLLETWLMEVVFPRF 473

Query: 182 RDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTI 241
           RDT  ++FKLGDYYDDPTVLRYLERLEG G SPLAAAAAI RI   EATAVLD+VK+S I
Sbjct: 474 RDTKCVQFKLGDYYDDPTVLRYLERLEGVGGSPLAAAAAIARI-GAEATAVLDNVKASAI 532

Query: 242 QALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSD-QNNFAFTTDAYGTSSSDDI 300
           QALQKVFP+  G++ ++  + G   + VPVVE+EE L +  +++ A   +    +SSD+I
Sbjct: 533 QALQKVFPVDHGNENLRREDSG-INNSVPVVESEEPLQNPARDDSANIAEIPKENSSDEI 591

Query: 301 HGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAG 360
           + ++ IT+KIKD SVKIMC GV +GL+TL+GLKYLP +N SS+ +KE+G A ASD+ + G
Sbjct: 592 YEQKLITEKIKDASVKIMCGGVVVGLMTLIGLKYLPAKNNSSILRKEVGSAMASDVTNVG 651

Query: 361 PLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRAS 420
            + +    +E+PRMDAR AE +VRKWQ+IKSQA GPDH LGKLPEVLDGQMLK+WTDRA+
Sbjct: 652 LVEN---SEEVPRMDARFAEGLVRKWQSIKSQALGPDHCLGKLPEVLDGQMLKIWTDRAA 708

Query: 421 EIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTT 480
           +IAQ GW ++Y+LLNLTIDSVT+S +GR A VEAT++ESARLTDT H E+ D   +TYTT
Sbjct: 709 DIAQHGWFWEYTLLNLTIDSVTVSLDGRRAMVEATLEESARLTDTXHQEHNDSYSTTYTT 768

Query: 481 RYELSSTKSGWRITDGS 497
           RYE+S   SGW+IT+G+
Sbjct: 769 RYEMSCNNSGWKITEGA 785

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562383|ref|XP_003549451.1| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic-like [Glycine max]

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 306/495 (61%), Positives = 385/495 (77%), Gaps = 2/495 (0%)

Query: 3   NILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALA 62
           NILWAVGGGGA A AGGFTRE FMNE+FL MT+AEQV+LF ATP++IPAE+FEAYGVALA
Sbjct: 297 NILWAVGGGGAAAFAGGFTREDFMNESFLHMTAAEQVELFVATPSNIPAESFEAYGVALA 356

Query: 63  LVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLV 122
           LVAQAFVGK+PHLI DADN+F+ LQQ K+  +R+  S+YIP E  E++FALERGLC+LLV
Sbjct: 357 LVAQAFVGKKPHLIQDADNLFQQLQQTKITAVRNAPSVYIPKEIREIDFALERGLCALLV 416

Query: 123 GKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFR 182
           G+LD+CR WLGLD+D SPYRNP+I++F++EN K  +D+DLPGLCKLLETWL EVVFPRFR
Sbjct: 417 GELDQCRSWLGLDTDSSPYRNPSIIEFIMENEKGDEDSDLPGLCKLLETWLMEVVFPRFR 476

Query: 183 DTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQ 242
           DT + RFKLGDYYDD TVLRYLERLEG   SPLAAAAAIV+IGA EATAV+  V++S + 
Sbjct: 477 DTKETRFKLGDYYDDSTVLRYLERLEGGSHSPLAAAAAIVKIGA-EATAVISQVQASVMN 535

Query: 243 ALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIHG 302
           AL+KVFP+G  D+ VK+  +G   D     E+E  +     + +   +  G  ++ +   
Sbjct: 536 ALKKVFPVGSEDQIVKHQVNGVNED-FGFSESENPVILSDQDSSVNAEVSGIKNTTETSE 594

Query: 303 EQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPL 362
            + IT++IK+ SV+IMCAGV IGLVTLVGLK+LP+RN   +  K  G A ASD I+ G L
Sbjct: 595 GEFITEEIKNASVQIMCAGVVIGLVTLVGLKFLPSRNGLPMLCKTTGSAMASDTINLGSL 654

Query: 363 LDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEI 422
            DE+  ++LP+MDAR+AE +VRKWQ++KS+AFGPDH +G+L EVLDG+MLK+WTDRA EI
Sbjct: 655 GDEEKVEQLPKMDARVAEALVRKWQSVKSEAFGPDHCMGRLHEVLDGEMLKIWTDRAGEI 714

Query: 423 AQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRY 482
           A+ GW+YDY+L +L IDSVT+SQ GR A VE T+KES  L    HP++      TYTTRY
Sbjct: 715 AERGWSYDYTLEDLNIDSVTISQNGRRAVVETTLKESIHLNAIGHPQHDASNSRTYTTRY 774

Query: 483 ELSSTKSGWRITDGS 497
           E+S T  GW+I +G+
Sbjct: 775 EMSFTGPGWKIVEGA 789

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438161|ref|XP_003589356.1| hypothetical protein MTR_1g023310 [Medicago truncatula] gi|355478404|gb|AES59607.1| hypothetical protein MTR_1g023310 [Medicago truncatula]

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 317/497 (63%), Positives = 389/497 (78%), Gaps = 4/497 (0%)

Query: 3   NILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALA 62
           NILWAVGGGGA AIAG FTRE FMNEAFL M +AEQV+LF ATP++IPAE+FEAYGVALA
Sbjct: 298 NILWAVGGGGAAAIAGSFTREDFMNEAFLHMKAAEQVELFVATPSNIPAESFEAYGVALA 357

Query: 63  LVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLE--KHEMEFALERGLCSL 120
           LVAQAFVGK+PHLI DADN+F  LQQ KV  +R+  S+Y P+E  K E++FALERGLC+L
Sbjct: 358 LVAQAFVGKKPHLIQDADNLFHQLQQTKVTNMRNAPSVYTPMEMEKREVDFALERGLCAL 417

Query: 121 LVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPR 180
           LVG+LD+CR WLGLDSD SPYRNP+I+DF++EN+K  +D+DLPGLCKLLETWL EVVFPR
Sbjct: 418 LVGELDQCRSWLGLDSDSSPYRNPSIIDFIMENAKGDEDSDLPGLCKLLETWLMEVVFPR 477

Query: 181 FRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSST 240
           FRDT +  FKLGDYYDDPTVLRYLERLEG G SPLAAAAAI +I   EATAV+ HV++S 
Sbjct: 478 FRDTKETNFKLGDYYDDPTVLRYLERLEGAGHSPLAAAAAIAKI-GAEATAVIGHVQASV 536

Query: 241 IQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDI 300
           I+AL++VFP+   +K + Y  +GE  D   + E E+ L     N     +  G  ++ +I
Sbjct: 537 IKALKRVFPVRSDNKILTYEVNGEK-DHSSLSENEDPLRLSDQNPPVNVEVSGIKNTAEI 595

Query: 301 HGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAG 360
           +    ITD+IK+ SVKIMCAGVAIGL+TL GLK LP++N S V  K  G A ASD I+ G
Sbjct: 596 NDGNFITDEIKNASVKIMCAGVAIGLITLAGLKILPSKNGSPVLHKVTGSAIASDTINLG 655

Query: 361 PLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRAS 420
           P+ DE+LG++LP+M A +AE +VRKWQ IKSQAFGPDH LG+L EVLDG+MLK+WTDRA+
Sbjct: 656 PVGDEELGEQLPKMSAMVAEALVRKWQYIKSQAFGPDHCLGRLQEVLDGEMLKIWTDRAA 715

Query: 421 EIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTT 480
           EIA+LGW+YDY+L +L IDSVT+SQ GR A VE T+KES  LT   HP++      TYTT
Sbjct: 716 EIAELGWSYDYNLEDLNIDSVTISQNGRRAVVETTLKESTHLTAVGHPQHATSNSRTYTT 775

Query: 481 RYELSSTKSGWRITDGS 497
           RYE+S + SGW+I +G+
Sbjct: 776 RYEMSFSDSGWKIIEGA 792

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538836|ref|XP_002510483.1| heat shock protein binding protein, putative [Ricinus communis] gi|223551184|gb|EEF52670.1| heat shock protein binding protein, putative [Ricinus communis]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 312/500 (62%), Positives = 370/500 (74%), Gaps = 16/500 (3%)

Query: 3   NILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALA 62
           N+LWAVG GGA+ +AGGFTRE FMNEAFLRMTSAEQV L  ATP+++P +  E YGVALA
Sbjct: 294 NVLWAVGKGGASPLAGGFTREDFMNEAFLRMTSAEQVDLHVATPHNVPPDRAEFYGVALA 353

Query: 63  LVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLV 122
           LVAQAFVGK+P+LI +ADN+F  L+Q KVP   +  S Y P + +E++++L RGLCSLL+
Sbjct: 354 LVAQAFVGKKPNLIPEADNLFYQLEQTKVPGQWNADSAYSPKQNYEIDYSLARGLCSLLL 413

Query: 123 GKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFR 182
           G LDECR  LGLDSD SPYRNP IVDFV++NS++ +DNDL  LCKLLETWL EVV PRFR
Sbjct: 414 GDLDECRTRLGLDSDNSPYRNPLIVDFVMKNSQDDNDNDLRLLCKLLETWLMEVVLPRFR 473

Query: 183 DTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQ 242
           DT DI+ KLGDYYDDPTVL YLE LEG G   LA+AA IVRIGA EATAV+DHVK+S IQ
Sbjct: 474 DTKDIQVKLGDYYDDPTVLGYLENLEGGGRPLLASAADIVRIGAEEATAVIDHVKASAIQ 533

Query: 243 ALQKVFPLGQGDKAVKYVEHGETYDPVPVV---ETEESLTSDQNNFAFTTDAYGTSSSDD 299
           ALQKVFP+ Q    ++   +G    P P +   E +E L  D        +  G  +++ 
Sbjct: 534 ALQKVFPISQKGTGLR---NGGMNYPFPAIADEEHQELLDPD-----VKAEISGEHNAEV 585

Query: 300 IHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDA 359
           I  E  +TD+  D  VKIMC GV IGLVT  GLK LP RN    Q  EIG A ASD I  
Sbjct: 586 I--EDLVTDRRTDTIVKIMCTGVTIGLVTFFGLKCLPVRN---RQCNEIGPAMASDTISV 640

Query: 360 GPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRA 419
           G  LD+K  +E PRMDAR AE IVRKWQNIKSQAFG DHSLGKL EVLDGQMLK WTDRA
Sbjct: 641 GFSLDDKSVEEFPRMDARFAEGIVRKWQNIKSQAFGSDHSLGKLHEVLDGQMLKTWTDRA 700

Query: 420 SEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYT 479
           +E+ QLGW YDY+LL+LT+DSV +S +G+HA VEAT+KESA L D VHPEN    I+TYT
Sbjct: 701 AEVEQLGWVYDYTLLDLTVDSVIVSLDGQHAVVEATIKESACLIDAVHPENNASNITTYT 760

Query: 480 TRYELSSTKSGWRITDGSKI 499
           TRYE+S +  GW+IT+G+ I
Sbjct: 761 TRYEMSCSNLGWKITEGAII 780

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520173|ref|XP_004167108.1| PREDICTED: LOW QUALITY PROTEIN: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic-like, partial [Cucumis sativus]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 324/500 (64%), Positives = 379/500 (75%), Gaps = 17/500 (3%)

Query: 3   NILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALA 62
           NILWAVGGGGATAIAGGFTRE FMNEAF +MT++EQV LF ATP +IPAE+FE YGVALA
Sbjct: 33  NILWAVGGGGATAIAGGFTREDFMNEAFEQMTASEQVDLFVATPTNIPAESFEVYGVALA 92

Query: 63  LVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLV 122
           LVAQ FVGK+PHLI DADN+F+ LQQ K        + Y P    E++FALERGLCSLL 
Sbjct: 93  LVAQVFVGKKPHLIQDADNLFQQLQQTKEAVGGTAVTAYAP---REVDFALERGLCSLLG 149

Query: 123 GKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFR 182
           G+LDECR WLGLDSD SPYRNPAIVDF+LENSK  D+NDLPGLCKLLETWLAEVVF RFR
Sbjct: 150 GELDECRSWLGLDSDNSPYRNPAIVDFILENSKGDDENDLPGLCKLLETWLAEVVFSRFR 209

Query: 183 DTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQ 242
           DT +I FKLGDYYDDPTVLRYLE+LEG   SPLAAAAAIV+IGA EATAVLDHVKSS IQ
Sbjct: 210 DTKNIYFKLGDYYDDPTVLRYLEKLEGVNGSPLAAAAAIVKIGA-EATAVLDHVKSSAIQ 268

Query: 243 ALQKVFPLGQGDKAVKYVEHGETYDP-----VPVVETEESLTSDQNNFAFTTDAYGTSSS 297
           AL+KVFPL Q     +     E   P     VP+V  +E   +++ NF+  ++       
Sbjct: 269 ALRKVFPLTQNSYRREAEAEMEYVFPAGNSQVPLVNFDE---NERTNFSEVSERTEAGER 325

Query: 298 DDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDII 357
           +D   EQ ITD+IKD SVKIMCAG+A+GL+TL GL++LP RN ++   KE G   AS   
Sbjct: 326 ND---EQPITDQIKDASVKIMCAGLAVGLLTLAGLRFLPARNNTTALLKEAGSPIASTTS 382

Query: 358 DAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTD 417
            A  +  EK  +E  RMDAR+AE +VRKWQ+IKS AFGP+H L KL E+LDG+MLK+WTD
Sbjct: 383 VASEV--EKSSEEPSRMDARIAEGLVRKWQSIKSMAFGPEHCLAKLSEILDGEMLKIWTD 440

Query: 418 RASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKIST 477
           RA EI++LGW YDY+L NLTIDSVT+S +GR A VEAT++ESARL D  HPE+ D    T
Sbjct: 441 RAIEISELGWFYDYTLSNLTIDSVTVSFDGRRATVEATLEESARLIDVDHPEHNDSNQKT 500

Query: 478 YTTRYELSSTKSGWRITDGS 497
           YTTRYELS   SGW+IT G+
Sbjct: 501 YTTRYELSYLTSGWKITKGA 520

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553409|ref|XP_003545049.1| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic-like [Glycine max]

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 310/495 (62%), Positives = 387/495 (78%), Gaps = 2/495 (0%)

Query: 3   NILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALA 62
           NILWAVGGGGA AIAGGFTRE FMNEAFL MT+AEQV+LF ATP++IPAE+FEAYGVALA
Sbjct: 298 NILWAVGGGGAAAIAGGFTREDFMNEAFLHMTAAEQVELFVATPSTIPAESFEAYGVALA 357

Query: 63  LVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLV 122
           LVAQAFVGK+PHLI DADN+F+ LQQ K+ T+R+  S+YIP EK E++FALERGLC+LLV
Sbjct: 358 LVAQAFVGKKPHLIQDADNLFQQLQQTKITTVRNAPSVYIPKEKREIDFALERGLCALLV 417

Query: 123 GKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFR 182
           G+LD+CR WLGLD+D SPYRNP+I++F++EN+K  +D+DLPGLCKLLETWL EVVFPRFR
Sbjct: 418 GELDQCRSWLGLDTDSSPYRNPSIIEFIMENAKGDEDSDLPGLCKLLETWLMEVVFPRFR 477

Query: 183 DTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQ 242
           DT + RFKLGDYYDDPTVLRYLERLEG  +SPLAAAAAI +I   EATAV+  V++S I 
Sbjct: 478 DTKETRFKLGDYYDDPTVLRYLERLEGGSNSPLAAAAAIAKI-GAEATAVISQVQASVIN 536

Query: 243 ALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIHG 302
           AL+K FP+G  D+ VK+  +G   D     E+E  L     +     +  G  ++ +   
Sbjct: 537 ALKKAFPVGSEDQIVKHQVNGVNED-FGFSESENPLILSDQDSPVNAEVSGIKNTMETRK 595

Query: 303 EQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPL 362
            + IT++IK  SV+IMCAGV IGLVTLVGLK+LPTRN S + +K  G A  SD I+ G L
Sbjct: 596 GEFITEEIKHASVQIMCAGVVIGLVTLVGLKFLPTRNGSPILRKMTGSAMVSDTINLGSL 655

Query: 363 LDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEI 422
            DE+  ++LP+MDAR+AE +VRKWQ++KS+AFGPDH LG+L EVLDG+MLK+WTDRA+EI
Sbjct: 656 GDEEKVEQLPKMDARVAEALVRKWQSVKSEAFGPDHCLGRLHEVLDGEMLKIWTDRAAEI 715

Query: 423 AQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRY 482
           A+ GW+YDY+L +L IDSVT+SQ GR A VE T+KES  L    HP++      TYTTRY
Sbjct: 716 AERGWSYDYTLEDLNIDSVTISQNGRRAVVETTLKESTHLNAVGHPQHDASNSRTYTTRY 775

Query: 483 ELSSTKSGWRITDGS 497
           E+S T + W+I +G+
Sbjct: 776 EMSFTGAEWKIVEGA 790

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470114|ref|XP_004152763.1| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic-like [Cucumis sativus]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 321/502 (63%), Positives = 379/502 (75%), Gaps = 24/502 (4%)

Query: 3   NILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALA 62
           NILWAVGGGGATAIAGGFTRE FMNEAF +MT++EQV LF ATP +IPAE+FE YGVALA
Sbjct: 298 NILWAVGGGGATAIAGGFTREDFMNEAFEQMTASEQVDLFVATPTNIPAESFEVYGVALA 357

Query: 63  LVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLV 122
           LVAQ FVGK+PHLI DADN+F+ LQQ K        + Y P    E++FALERGLCSLL 
Sbjct: 358 LVAQVFVGKKPHLIQDADNLFQQLQQTKEAVGGTAVTAYAP---REVDFALERGLCSLLG 414

Query: 123 GKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFR 182
           G+LDECR WLGLDSD SPYRNPAIVDF+LENSK  D+NDLPGLCKLLETWLAEVVF RFR
Sbjct: 415 GELDECRSWLGLDSDNSPYRNPAIVDFILENSKGDDENDLPGLCKLLETWLAEVVFSRFR 474

Query: 183 DTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQ 242
           DT +I FKLGDYYDDPTVLRYLE+LEG   SPLAAAAAIV+IGA EATAVLDHVKSS IQ
Sbjct: 475 DTKNIYFKLGDYYDDPTVLRYLEKLEGVNGSPLAAAAAIVKIGA-EATAVLDHVKSSAIQ 533

Query: 243 ALQKVFPLGQGDKAVKYVEHGETYDP-----VPVVETEESLTSDQNNFAFTTDAYGTSSS 297
           AL+KVFPL Q     +     E   P     VP+V  +E   +++ NF+  ++       
Sbjct: 534 ALRKVFPLTQNSYRREAEAEMEYVFPAGNSQVPLVNFDE---NERTNFSEVSERTEAGER 590

Query: 298 DDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIG--LAKASD 355
           +D   EQ ITD+IKD SVKIMCAG+A+GL+TL GL++LP RN ++   KE G  +A  + 
Sbjct: 591 ND---EQPITDQIKDASVKIMCAGLAVGLLTLAGLRFLPARNNTTALLKEAGSPIASTTS 647

Query: 356 IIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVW 415
           ++       EK  +E  RMDAR+AE +VRKWQ+IKS AFGP+H L KL E+LDG+MLK+W
Sbjct: 648 VV-------EKSSEEPSRMDARIAEGLVRKWQSIKSMAFGPEHCLAKLSEILDGEMLKIW 700

Query: 416 TDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKI 475
           TDRA EI++LGW YDY+L NLTIDSVT+S +GR A VEAT++ESARL D  HPE+ D   
Sbjct: 701 TDRAIEISELGWFYDYTLSNLTIDSVTVSFDGRRATVEATLEESARLIDVDHPEHNDSNQ 760

Query: 476 STYTTRYELSSTKSGWRITDGS 497
            TYT RYELS   SGW+IT G+
Sbjct: 761 KTYTMRYELSYLTSGWKITKGA 782

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33436339|gb|AAQ18645.1| division protein [Arabidopsis thaliana]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 292/514 (56%), Positives = 363/514 (70%), Gaps = 31/514 (6%)

Query: 3   NILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALA 62
           NILW+VGGGGA+A+ GG TRE FMNEAFLRMT+AEQV LF ATP++IPAE+FE Y VALA
Sbjct: 296 NILWSVGGGGASALVGGLTREKFMNEAFLRMTAAEQVDLFVATPSNIPAESFEVYEVALA 355

Query: 63  LVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLV 122
           LVAQAF+GK+PHL+ DAD  F+ LQQ KV  +     +Y      E++F LERGLC+LL+
Sbjct: 356 LVAQAFIGKKPHLLQDADKQFQQLQQAKVMAMEIPAMLYDTRNNWEIDFGLERGLCALLI 415

Query: 123 GKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFR 182
           GK+DECR+WLGLDS+ S YRNPAIV+FVLENS   D++DLPGLCKLLETWLA VVFPRFR
Sbjct: 416 GKVDECRMWLGLDSEDSQYRNPAIVEFVLENSNRDDNDDLPGLCKLLETWLAGVVFPRFR 475

Query: 183 DTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQ 242
           DT D +FKLGDYYDDP VL YLER+E    SPLAAAA + RIGA       +HVK+S +Q
Sbjct: 476 DTKDKKFKLGDYYDDPMVLSYLERVEVVQGSPLAAAATMARIGA-------EHVKASAMQ 528

Query: 243 ALQKVFPLGQGDK-------------AVKYVEHGETYDPVPVVETEESLTSDQNNFAFTT 289
           ALQKVFP    D+             +V  V +    D  P V   E++   +N   F T
Sbjct: 529 ALQKVFPSRYTDRNSAEPKDVQETVFSVDPVGNNVGRDGEPGVFIAEAVRPSEN---FET 585

Query: 290 DAYGT------SSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSV 343
           + Y        SS D+   E S+ D +K+ SVKI+ AGVAIGL++L   KY   ++ SS 
Sbjct: 586 NDYAIRAGVSESSVDETTVEMSVADMLKEASVKILAAGVAIGLISLFSQKYF-LKSSSSF 644

Query: 344 QQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKL 403
           Q+K++  +  SD+   G +  +   + LPRMDAR AE+IV KWQ IKS AFGPDH +  L
Sbjct: 645 QRKDMVSSMESDVATIGSVRADD-SEALPRMDARTAENIVSKWQKIKSLAFGPDHRIEML 703

Query: 404 PEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLT 463
           PEVLDG+MLK+WTDRA+E AQLG  YDY+LL L++DSVT+S +G  A VEAT++ESA L+
Sbjct: 704 PEVLDGRMLKIWTDRAAETAQLGLVYDYTLLKLSVDSVTVSADGTRALVEATLEESACLS 763

Query: 464 DTVHPENCDEKISTYTTRYELSSTKSGWRITDGS 497
           D VHPEN    + TYTTRYE+  +KSGW+IT+GS
Sbjct: 764 DLVHPENNATDVRTYTTRYEVFWSKSGWKITEGS 797

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
TAIR|locus:2162341	801	ARC6 "AT5G42480" [Arabidopsis	0.962	0.602	0.548	2.6e-134
TAIR|locus:2094143	819	PARC6 "paralog of ARC6" [Arabi	0.235	0.144	0.349	2.8e-12
UNIPROTKB|Q55559	714	sll0169 "Sll0169 protein" [Syn	0.201	0.141	0.318	8.7e-08

TAIR|locus:2162341 ARC6 "AT5G42480" [Arabidopsis thaliana (taxid:3702)]

 Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
 Identities = 282/514 (54%), Positives = 351/514 (68%)

Query:     3 NILWXXXXXXXXXXXXXFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALA 62
             NILW              TRE FMNEAFLRMT+AEQV LF ATP++IPAE+FE Y VALA
Sbjct:   296 NILWSVGGGGASALVGGLTREKFMNEAFLRMTAAEQVDLFVATPSNIPAESFEVYEVALA 355

Query:    63 LVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLV 122
             LVAQAF+GK+PHL+ DAD  F+ LQQ KV  +     +Y      E++F LERGLC+LL+
Sbjct:   356 LVAQAFIGKKPHLLQDADKQFQQLQQAKVMAMEIPAMLYDTRNNWEIDFGLERGLCALLI 415

Query:   123 GKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFR 182
             GK+DECR+WLGLDS+ S YRNPAIV+FVLENS   D++DLPGLCKLLETWLA VVFPRFR
Sbjct:   416 GKVDECRMWLGLDSEDSQYRNPAIVEFVLENSNRDDNDDLPGLCKLLETWLAGVVFPRFR 475

Query:   183 DTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLXXXXXIVRIGATEATAVLDHVKSSTIQ 242
             DT D +FKLGDYYDDP VL YLER+E    SPL     + RIGA       +HVK+S +Q
Sbjct:   476 DTKDKKFKLGDYYDDPMVLSYLERVEVVQGSPLAAAAAMARIGA-------EHVKASAMQ 528

Query:   243 ALQKVFPLGQGDK-AVKYVEHGETY---DPV---------PVVETEESLTSDQNNFAFTT 289
             ALQKVFP    D+ + +  +  ET    DPV         P V   E++   +N   F T
Sbjct:   529 ALQKVFPSRYTDRNSAEPKDVQETVFSVDPVGNNVGRDGEPGVFIAEAVRPSEN---FET 585

Query:   290 DAY----GTSSS--DDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSV 343
             + Y    G S S  D+   E S+ D +K+ SVKI+ AGVAIGL++L   KY   ++ SS 
Sbjct:   586 NDYAIRAGVSESSVDETTVEMSVADMLKEASVKILAAGVAIGLISLFSQKYF-LKSSSSF 644

Query:   344 QQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKL 403
             Q+K++  +  SD+   G +  +   + LPRMDAR AE+IV KWQ IKS AFGPDH +  L
Sbjct:   645 QRKDMVSSMESDVATIGSVRADD-SEALPRMDARTAENIVSKWQKIKSLAFGPDHRIEML 703

Query:   404 PEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLT 463
             PEVLDG+MLK+WTDRA+E AQLG  YDY+LL L++DSVT+S +G  A VEAT++ESA L+
Sbjct:   704 PEVLDGRMLKIWTDRAAETAQLGLVYDYTLLKLSVDSVTVSADGTRALVEATLEESACLS 763

Query:   464 DTVHPENCDEKISTYTTRYELSSTKSGWRITDGS 497
             D VHPEN    + TYTTRYE+  +KSGW+IT+GS
Sbjct:   764 DLVHPENNATDVRTYTTRYEVFWSKSGWKITEGS 797

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IMP

GO:0031357 "integral to chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2094143 PARC6 "paralog of ARC6" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
 Identities = 43/123 (34%), Positives = 66/123 (53%)

Query:   374 MDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSL 433
             MD   AE++VR+W+N+K++A GP H +  L EVLD  ML  W   A         + + L
Sbjct:   688 MDTEEAEELVRQWENVKAEALGPTHQVYSLSEVLDESMLVQWQTLAQTAEAKSCYWRFVL 747

Query:   434 LNLTIDSVTLSQEG---RHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSG 490
             L+L +    + ++G     A +EA ++E+A L D   P+N  +  STY  RY L   + G
Sbjct:   748 LHLEVLQAHIFEDGIAGEAAEIEALLEEAAELVDESQPKNA-KYYSTYKIRYILKKQEDG 806

Query:   491 -WR 492
              W+
Sbjct:   807 LWK 809

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0043572 "plastid fission" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009528 "plastid inner membrane" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IMP

GO:0043621 "protein self-association" evidence=IPI

UNIPROTKB|Q55559 sll0169 "Sll0169 protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 117 (46.2 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
 Identities = 35/110 (31%), Positives = 56/110 (50%)

Query:    99 SIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEAD 158
             S+ I LE  + + ALE+ +C LL+G+ +   +   +D       +P IV   LE+     
Sbjct:   297 SLIIQLENCQ-DLALEKVICELLLGQTEV--VLAAIDQG-----DPKIVAG-LESKLATG 347

Query:   159 DNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLE 208
             ++ L       E WL E + P FRD S        Y+++P+V +YLE+LE
Sbjct:   348 EDPLTAFYTFTEQWLEEEIVPYFRDLSPETLSPKAYFNNPSVQQYLEQLE 397

GO:0000917 "barrier septum assembly" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030428 "cell septum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FIG9	ARC6_ARATH	No assigned EC number	0.5700	0.9621	0.6029	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.V.1611.1	hypothetical protein (733 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.543
	gw1.X.3026.1	hypothetical protein (245 aa)			•	•					0.512
	grail3.0045021002	hypothetical protein (231 aa)			•						0.506
	estExt_fgenesh4_pm.C_LG_IX0151	hypothetical protein (290 aa)			•						0.506
	estExt_Genewise1_v1.C_LG_VIII0078	hypothetical protein (95 aa)			•						0.506
	gw1.1884.1.1	annotation not avaliable (196 aa)			•						0.505
	eugene3.14640002	annotation not avaliable (58 aa)			•						0.504
	estExt_Genewise1_v1.C_LG_XIV2304	hypothetical protein (126 aa)			•						0.504
	estExt_Genewise1_v1.C_LG_XIII0363	hypothetical protein (158 aa)			•						0.504
	gw1.XIV.3174.1	hypothetical protein (202 aa)			•						0.503

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	502
pfam13355	117	pfam13355, DUF4101, Protein of unknown function (D	2e-36

>gnl|CDD|222068 pfam13355, DUF4101, Protein of unknown function (DUF4101)

 Score =  130 bits (329), Expect = 2e-36
 Identities = 48/118 (40%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 379 AEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTI 438
           AE +V+ W + K+QA GP H +  L EVL G +L  W DRA  +   G  Y Y    L I
Sbjct: 1   AEQLVQTWLDAKAQALGPPHDIDSLSEVLTGPLLSRWRDRAQWLKANGSYYTYD-HQLKI 59

Query: 439 DSVTL-SQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD 495
           +SV + SQ    A VEATV ESA+L D    +N      T   RY L      W+I D
Sbjct: 60  ESVEVFSQSPNRAEVEATVTESAQLYDNGQIDNETSYDDTLRVRYILVRDNGQWKIAD 117

This is a family of uncharacterized proteins, and is sometimes found in combination with pfam00226. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	502
PF13355	117	DUF4101: Protein of unknown function (DUF4101)	100.0
PF04280	147	Tim44: Tim44-like domain; InterPro: IPR007379 Tim4	95.05
PRK13616	591	lipoprotein LpqB; Provisional	94.49
PRK13615	557	lipoprotein LpqB; Provisional	93.66
PF12870	111	Lumazine_bd: Lumazine-binding domain; InterPro: IP	93.59
PRK13613	599	lipoprotein LpqB; Provisional	93.37
PRK13614	573	lipoprotein LpqB; Provisional	92.39
PF14534	107	DUF4440: Domain of unknown function (DUF4440); PDB	89.09
PF13474	121	SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE	88.82
PF13577	127	SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RF	88.19
PF12883	120	DUF3828: Protein of unknown function (DUF3828); In	87.13
PF05494	170	Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro:	86.24
TIGR03481	198	HpnM hopanoid biosynthesis associated membrane pro	84.66
COG5517	164	Small subunit of phenylpropionate dioxygenase [Sec	80.53
TIGR02246	128	conserved hypothetical protein. This family consis	80.36

>PF13355 DUF4101: Protein of unknown function (DUF4101)

Probab=100.00  E-value=1.3e-37  Score=276.57  Aligned_cols=116  Identities=44%  Similarity=0.717  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecC-CCceEEEEEEEE
Q 010757          379 AEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ-EGRHAWVEATVK  457 (502)
Q Consensus       379 A~~lVq~Wl~aKa~AlGp~h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~-~~~rA~VeA~V~  457 (502)
                      |++||++||++||+||||+|+++.|++||+|+||++|++++++++++||||+|+ |+++|++|+++. +|+||+|+|+|+
T Consensus         1 A~~lv~~Wl~~Ka~alg~~~~~~~L~~vl~g~ll~~w~~~a~~~~~~g~y~~y~-~~~~I~sv~~~~~~~~ra~v~a~v~   79 (117)
T PF13355_consen    1 AEQLVQRWLSAKAQALGPPHDIDSLSEVLTGPLLSQWQDRAQWLKANGWYWEYD-HKLKIDSVEVFSDSPNRATVEATVT   79 (117)
T ss_pred             CHHHHHHHHHHHHHHhCCCcchhHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEe-eeeEEEEEEEcCCCCCeEEEEEEEE
Confidence            689999999999999999999999999999999999999999999999999999 999999999877 699999999999


Q ss_pred             EeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeec
Q 010757          458 ESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD  495 (502)
Q Consensus       458 E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~  495 (502)
                      |+++||++|++.+++||.++|+|||+|+|++|+|||+|
T Consensus        80 E~~~l~~~g~~~~~~s~~~~~~vrY~L~r~~~~WkI~d  117 (117)
T PF13355_consen   80 ESAQLYDNGQPDNNPSYDSTLRVRYELVRQNGQWKITD  117 (117)
T ss_pred             EEEEEEeCCccccCCCCCCcEEEEEEEEEcCCEEEecC
Confidence            99999999999988899999999999999999999986

>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []

Probab=95.05  E-value=0.28  Score=44.47  Aligned_cols=97  Identities=13%  Similarity=0.120  Sum_probs=60.1

Q ss_pred             CCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecC---CCceEEEEEEE--EEeeeEeccCCCccCC
Q 010757          398 HSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ---EGRHAWVEATV--KESARLTDTVHPENCD  472 (502)
Q Consensus       398 h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~---~~~rA~VeA~V--~E~a~l~~~~~~~~~~  472 (502)
                      -|.+.|..++++.|++++....++.+..|....-  ..+.|..+++..   +++.+.|.+++  +.....++..+.-...
T Consensus        38 ~D~~~l~~~~t~~~~~~~~~~i~~~~~~g~~~~~--~~v~i~~~~i~~~~~~~~~~~vtv~f~~~~~~~~~d~~G~ii~G  115 (147)
T PF04280_consen   38 GDLEALRPLLTEELYERLQAEIKARRSRGEVNDP--EIVRIDNAEIVEAEQEGNFDQVTVRFRSQQIDYVDDKDGEIIEG  115 (147)
T ss_dssp             T-HHHHHHHB-HHHHHHHHHHHHHHHHTTEEEEE--EEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEETTTCTCCCC
T ss_pred             CCHHHHHHHhCHHHHHHHHHHHHHHHHcCCcccc--eEEEEEEEEeeeceeeCCEEEEEEEEEEEEEEEEECCCCcEeeC
Confidence            3567899999999999999999998888866655  466888877522   46655554444  5555555533322222


Q ss_pred             CCCcceEEEE--EEEEc----CCceEeecc
Q 010757          473 EKISTYTTRY--ELSST----KSGWRITDG  496 (502)
Q Consensus       473 sy~~t~~vrY--~L~r~----~g~WkI~~~  496 (502)
                      +......++|  .|.|.    ++.|||++.
T Consensus       116 ~~~~~~~~~e~W~f~r~~~~~~~~W~L~~i  145 (147)
T PF04280_consen  116 DPDKIQEFTEYWTFERDLGSPNPNWRLAGI  145 (147)
T ss_dssp             STTS-EEEEEEEEEEE--TTCCCTEEEEEE
T ss_pred             CCCCceEEEEEEEEEEeCCCCCCCEEEEEE
Confidence            3333334444  55565    358999875

Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.49  E-value=0.22  Score=56.17  Aligned_cols=104  Identities=19%  Similarity=0.256  Sum_probs=65.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecCCCceEE
Q 010757          372 PRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAW  451 (502)
Q Consensus       372 p~lt~~~A~~lVq~Wl~aKa~AlGp~h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~~~~rA~  451 (502)
                      |.++   .+.||+.-+.+=+   +|..+-..-.++|++++=..|+..       +.--.|+    +|+.+....+.++++
T Consensus        52 ~ga~---p~~iVrgFl~A~a---~p~~~y~~AR~fLt~~aa~~W~p~-------~~~~V~d----~~~~~~~~~~~~~~~  114 (591)
T PRK13616         52 PGMD---PDLLLRDFLKASA---DPANRHLAARQFLTESASNAWDDA-------GSALVID----RIDFNESTRSADRVT  114 (591)
T ss_pred             CCCC---HHHHHHHHHHhcc---CCcchHHHHHHhcCHHHHcccCCC-------CcEEEEe----cCCcccccCCCccEE
Confidence            4455   6779999997633   455555677899999999999743       2333343    222222223444555


Q ss_pred             EEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeec
Q 010757          452 VEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD  495 (502)
Q Consensus       452 VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~  495 (502)
                      +.++.+=..++-.+|.-.+.   ...++..|+|+|.+|+|||.+
T Consensus       115 ~~v~~~~vg~l~~~G~y~~~---~~~~~~~~~l~~~dgqWRIs~  155 (591)
T PRK13616        115 YTIRANIVGSLSDGGVFEPA---NGSLETPIELVKVDGEWRIDR  155 (591)
T ss_pred             EEEEEEEEEEEcCCccEecC---CCCeeeeEEEEEECCEEEecc
Confidence            55555546667666653331   123345999999999999985

>PRK13615 lipoprotein LpqB; Provisional

Probab=93.66  E-value=0.49  Score=53.10  Aligned_cols=100  Identities=12%  Similarity=0.180  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecCCCceEEEEEEEE
Q 010757          378 LAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVK  457 (502)
Q Consensus       378 ~A~~lVq~Wl~aKa~AlGp~h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~~~~rA~VeA~V~  457 (502)
                      +.+.||+.-+.+ +.  +|..+-..-.++|++++=..|+..       +.--.|+    .+++ ....+.+..+|.+++ 
T Consensus        52 ~Pd~iVrgFl~A-~a--~p~~dy~~AR~fLT~~Aa~~W~p~-------~~~~V~d----~~~~-~~~~~~~~~~v~~~~-  115 (557)
T PRK13615         52 GPDDVIAGFVDA-AT--SSADQYGVARQFLSSDFASRWDPF-------ASVVVWE----GQAR-TSEEVDGTYSYSVTT-  115 (557)
T ss_pred             CHHHHHHHHHHh-cc--CCCccHHHHHHHcChhHHcccCCC-------CceEEEe----CCcc-ccCCCccEEEEEEEE-
Confidence            367899999988 44  444444556799999999999633       3333443    1222 111234445555544 


Q ss_pred             EeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeec
Q 010757          458 ESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD  495 (502)
Q Consensus       458 E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~  495 (502)
                       ..++-.+|.-.+. ....+.+..|+|+|.+|+|||.+
T Consensus       116 -~g~ld~~G~y~~~-~~~~~~~~~f~l~k~dgqWRIs~  151 (557)
T PRK13615        116 -IATVDGQGHYREV-GSDQETRLSFQLVQERGEWRIAK  151 (557)
T ss_pred             -EEEECCCCcEEeC-CCCceeeeeEEEEEeCCEEEecc
Confidence             6667666543331 22223456899999999999985

>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria

Probab=93.59  E-value=0.13  Score=43.27  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=24.2

Q ss_pred             CceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEee
Q 010757          447 GRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRIT  494 (502)
Q Consensus       447 ~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~  494 (502)
                      |+.|+|..+++     |.+|..         .+.+..|+|.+|.|||+
T Consensus        78 g~~A~V~v~~~-----~~~g~~---------~~~~~~lvk~dg~Wkv~  111 (111)
T PF12870_consen   78 GDTATVTVKIT-----YKDGKE---------KTFTVPLVKEDGKWKVC  111 (111)
T ss_dssp             SSEEEEEEEEE-----ETTS-E---------EEEEEEEEEETTEEEE-
T ss_pred             CCEEEEEEEEE-----ECCCCe---------eEEEEEEEEECCEEEeC
Confidence            88999987775     333322         23677899999999985

Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.

>PRK13613 lipoprotein LpqB; Provisional

Probab=93.37  E-value=0.7  Score=52.32  Aligned_cols=104  Identities=20%  Similarity=0.239  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEE--ecCCCceEEEEEE
Q 010757          378 LAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVT--LSQEGRHAWVEAT  455 (502)
Q Consensus       378 ~A~~lVq~Wl~aKa~AlGp~h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~--~s~~~~rA~VeA~  455 (502)
                      ..+.||+.-+.+ +..+..+|  ..-.++|++.+=..|+..       +.--.|+  +..+....  ...++++++|.++
T Consensus        61 ~P~~iVrgFl~A-~a~~~~dy--~~AR~yLT~~aa~~W~P~-------~~v~V~d--~~~~~~~~~~~~~~~~~~~v~v~  128 (599)
T PRK13613         61 APAEIVQGFLEA-LTSFDPDY--ETARKYLTGDAAKSWRPG-------GSVTVLA--GAPTVSADREGDREGDDATVTLT  128 (599)
T ss_pred             CHHHHHHHHHHh-ccCCcccH--HHHHHHcCHhHHcccCCC-------CceEEEe--CCCcccccccccCCCccEEEEEE
Confidence            367799999988 44445554  456799999999999743       3334443  11111111  1224666777677


Q ss_pred             EEEeeeEeccCCCccCCCCCcc-eEEEEEEEEcCCceEeec
Q 010757          456 VKESARLTDTVHPENCDEKIST-YTTRYELSSTKSGWRITD  495 (502)
Q Consensus       456 V~E~a~l~~~~~~~~~~sy~~t-~~vrY~L~r~~g~WkI~~  495 (502)
                      .+-..++-.+|.-.+  ..... -++.|+|+|.+|+|||.+
T Consensus       129 ~~~vg~ld~~G~y~p--~~~~~~~~~~~~l~~~dgqWRIs~  167 (599)
T PRK13613        129 GTRVATIDEDGQYVP--ASGGYYTDVHLTLQDKTGQWRIDR  167 (599)
T ss_pred             EEEEEEECCCCCEec--CCCCeeeeeEEEEEecCCeEEecc
Confidence            666777766665333  11122 246799999999999985

>PRK13614 lipoprotein LpqB; Provisional

Probab=92.39  E-value=1.2  Score=50.14  Aligned_cols=100  Identities=14%  Similarity=0.141  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecCCCceEEEEEEEE
Q 010757          378 LAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVK  457 (502)
Q Consensus       378 ~A~~lVq~Wl~aKa~AlGp~h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~~~~rA~VeA~V~  457 (502)
                      +.+.||+..+.+ +  =+|..+-..-.++|++++=..|+..       +.--.|+ .  .+.-+. ..+.+..+|++++ 
T Consensus        61 ~p~~iVrgFl~A-~--a~~~~~y~~AR~fLT~~aa~~W~p~-------~~~~V~~-~--~~~~~~-~~~~~~~~v~~~v-  125 (573)
T PRK13614         61 SPETVIEGFYAA-G--SGYEDDYAVARQYLTQAAATTWKPD-------QRTLVFR-D--NPRVVK-TGNENEYNYELDV-  125 (573)
T ss_pred             CHHHHHHHHHHh-c--cCCcccHHHHHHHcChHHHhccCCC-------CcEEEEe-c--Cccccc-cCCCcEEEEEEEE-
Confidence            367899999977 2  2344344566799999999999633       3333443 1  121111 1144455555555 


Q ss_pred             EeeeEeccCCCccCCCCCcc-eEEEEEEEEcCCceEeec
Q 010757          458 ESARLTDTVHPENCDEKIST-YTTRYELSSTKSGWRITD  495 (502)
Q Consensus       458 E~a~l~~~~~~~~~~sy~~t-~~vrY~L~r~~g~WkI~~  495 (502)
                       ..++-.+|.-.+  ....+ .++.|+|+|.+|+|||.+
T Consensus       126 -~g~ld~~G~y~~--~~~~~~~~~~f~l~k~dgqWRIs~  161 (573)
T PRK13614        126 -AYSVDADGIATQ--FPEGTKETIPVTLTQVDGEWRISK  161 (573)
T ss_pred             -EEEEcCCCcEec--CCCCceeeeeEEEEEeCCeEEecc
Confidence             555655554322  11223 335999999999999985

>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A

Probab=89.09  E-value=1.3  Score=36.31  Aligned_cols=52  Identities=13%  Similarity=0.119  Sum_probs=30.2

Q ss_pred             eeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEe
Q 010757          435 NLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRI  493 (502)
Q Consensus       435 ~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI  493 (502)
                      .++++.+++...|+.|.+....  ..+...+|+     .-....+..+++.|++|.|||
T Consensus        56 ~~~~~~~~v~~~gd~a~~~~~~--~~~~~~~g~-----~~~~~~~~~~v~~k~~g~W~i  107 (107)
T PF14534_consen   56 SIKFEDVEVRVLGDTAVVRGRW--TFTWRGDGE-----PVTIRGRFTSVWKKQDGKWRI  107 (107)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEE--EEEETTTTE-----EEEEEEEEEEEEEEETTEEEE
T ss_pred             eEEEEEEEEEEECCEEEEEEEE--EEEEecCCc-----eEEEEEEEEEEEEEeCCEEEC
Confidence            3344445544447777665554  322322221     112456788889999999997

>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B

Probab=88.82  E-value=1.8  Score=36.69  Aligned_cols=58  Identities=12%  Similarity=0.188  Sum_probs=36.8

Q ss_pred             cEEEeeeeeeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecc
Q 010757          427 WTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDG  496 (502)
Q Consensus       427 ~y~~Y~l~~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~  496 (502)
                      .-+.|...+++|     ..+++.|.+.....-.  +..+++.     .....+.++.+.|.+|.|||...
T Consensus        57 ~~~~~~~~~~~v-----~~~~~~a~~~~~~~~~--~~~~~~~-----~~~~~r~t~v~~k~~~~Wki~h~  114 (121)
T PF13474_consen   57 RPISIEFEDVQV-----SVSGDVAVVTGEFRLR--FRNDGEE-----IEMRGRATFVFRKEDGGWKIVHI  114 (121)
T ss_dssp             SEEEEEEEEEEE-----EEETTEEEEEEEEEEE--EECTTCE-----EEEEEEEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEEEEEE-----EECCCEEEEEEEEEEE--EecCCcc-----ceeeEEEEEEEEEECCEEEEEEE
Confidence            355555445444     3357778876665333  3333322     24667899999999999999764

>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B

Probab=88.19  E-value=3.3  Score=35.50  Aligned_cols=57  Identities=28%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             eeeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecc
Q 010757          434 LNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDG  496 (502)
Q Consensus       434 ~~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~  496 (502)
                      |-+.-..|++  +|+.|++.+.+.-......++  ..  .....-+++.+|+|.+|+|||...
T Consensus        70 H~~~~~~v~~--dgd~A~~~~~~~~~~~~~~~g--~~--~~~~~g~y~~~~~r~~g~W~i~~~  126 (127)
T PF13577_consen   70 HMVTNPVVDV--DGDTATVRSYVLATHRDPDDG--EP--ALWSGGRYTDELVREDGGWRISSR  126 (127)
T ss_dssp             EEEEEEEEEE--ETTEEEEEEEEEEEEEEETTT--EE--EEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEccceEEEE--cCCEEEEEEEEEEEEEEcCCC--ce--EEEEEEEEEEEEEEECCEEEEEEE
Confidence            5334344444  677888888875443333322  11  222344688889999999999864

>PF12883 DUF3828: Protein of unknown function (DUF3828); InterPro: IPR024289 This domain currently has no known function

Probab=87.13  E-value=0.7  Score=41.35  Aligned_cols=79  Identities=13%  Similarity=0.039  Sum_probs=42.9

Q ss_pred             ChhhhhchhHHHHHHHHHHH--HHHcCcEEEee-------eeeeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCC
Q 010757          402 KLPEVLDGQMLKVWTDRASE--IAQLGWTYDYS-------LLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCD  472 (502)
Q Consensus       402 ~L~~IL~g~~L~~w~~~a~~--l~~~g~y~~Y~-------l~~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~  472 (502)
                      .+...++..++.++....+.  .--.--|+.+.       +.+++|..+.  .+++.|.|.+++         |.     
T Consensus        29 ~~~~yvsk~~~~~l~~~~~~~~~~~D~D~f~~aQD~~~~w~~~i~v~~~~--~~~~~a~v~v~~---------G~-----   92 (120)
T PF12883_consen   29 LMERYVSKETIAKLKKIYQLEQGILDFDYFIKAQDYDPDWVSNIKVGPAK--MDGDCAVVYVTF---------GK-----   92 (120)
T ss_dssp             HHHHHB-HHHHHHHHHHH----HHSSSBTTTTBSS--TTSGGG-EEEEEE--TTEEEEEEEETT---------TS-----
T ss_pred             HHHHHHHHHHHHHHHhhhhcccCCcCCCCceecccCChhhHhhEEEeecc--ccCCeEEEEEEE---------ec-----
Confidence            36777777777776654431  00011122211       1344555543  356667775554         21     


Q ss_pred             CCCcceEEEEEEEEcCCceEeecc
Q 010757          473 EKISTYTTRYELSSTKSGWRITDG  496 (502)
Q Consensus       473 sy~~t~~vrY~L~r~~g~WkI~~~  496 (502)
                      .+....++.|.|++++|+|||.+-
T Consensus        93 ~~~~~~~~~~~l~ke~g~WkI~~V  116 (120)
T PF12883_consen   93 NNEKKQTVIVCLVKENGRWKIDDV  116 (120)
T ss_dssp             TT-EEEEEEEEEEEETTEEEEEEE
T ss_pred             CCCCCEEEEEEEEEECCEEEEEEe
Confidence            223456799999999999999874

; PDB: 3KZT_A.

>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []

Probab=86.24  E-value=1.4  Score=41.41  Aligned_cols=51  Identities=18%  Similarity=0.234  Sum_probs=31.4

Q ss_pred             eeeEEEEEEecC--CCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeeccce
Q 010757          434 LNLTIDSVTLSQ--EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSK  498 (502)
Q Consensus       434 ~~l~I~sV~~s~--~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~V  498 (502)
                      ++++|.++....  +++++.|.++|...     ++         ..+.|.|.|.+.+|+|||.|..+
T Consensus        85 ~~v~~~~~~~~~~~~~~~~~V~t~i~~~-----~g---------~~i~v~y~l~~~~g~Wki~Dv~i  137 (170)
T PF05494_consen   85 QSVEVLSEPPNGRKGGNRAIVRTEIISK-----DG---------QPIPVDYRLRKKDGKWKIYDVII  137 (170)
T ss_dssp             -EEEE------S-TT-SEEEEEEEEEET------T---------EEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CeEEEEeccCCCCCCCCEEEEEEEEEcC-----CC---------CcEEEEEEEEEcCCCeEEEEEEE
Confidence            456677666443  36789997777221     11         45679999999889999999765

Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.

>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM

Probab=84.66  E-value=2.2  Score=41.60  Aligned_cols=53  Identities=19%  Similarity=0.257  Sum_probs=34.5

Q ss_pred             eeeeeeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeeccce
Q 010757          431 YSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSK  498 (502)
Q Consensus       431 Y~l~~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~V  498 (502)
                      |.-++++|.+.+.. +++++.|..+|.     .+++         ..+.|.|.|.+.+|+|||.|..|
T Consensus       108 y~~~~i~v~~~~~~-~~~~~~V~t~i~-----~~~g---------~~i~V~y~l~~~~g~WkV~DV~i  160 (198)
T TIGR03481       108 YAGERFEVEEQQPS-PRGRVIVRSTIV-----SDGG---------DPVKFDYIMRQGQGKWRIVDILA  160 (198)
T ss_pred             hcCceEEEeecccC-CCCCEEEEEEEE-----cCCC---------CcEEEEEEEEecCCCeEEEEEEE
Confidence            44355666665433 455677765552     1222         34669999998889999999865

The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.

>COG5517 Small subunit of phenylpropionate dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=80.53  E-value=3.7  Score=38.95  Aligned_cols=56  Identities=25%  Similarity=0.377  Sum_probs=40.9

Q ss_pred             EEEEEEecC-CCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecccee
Q 010757          437 TIDSVTLSQ-EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKI  499 (502)
Q Consensus       437 ~I~sV~~s~-~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~Vi  499 (502)
                      .|..|++.. +++  .|++++++..-.|.   .+...|++.+  .+|+|...+++|||..-.||
T Consensus        93 ~isNvqi~~~~~~--~~~vR~N~~~~~~r---~~~~~tffg~--t~y~l~~~~e~~~i~~r~iv  149 (164)
T COG5517          93 LISNVQILEVDDG--LVRVRVNYLTFRYR---YDETDTFFGT--TRYDLDVRGEGWRIASRKIV  149 (164)
T ss_pred             eeccceEEeecCC--EEEEEEeEEEEEEe---ccccceEeee--EEEEeeccCCcceeeeeEEE
Confidence            677777766 554  46667777766663   3445577776  99999999999999977664

>TIGR02246 conserved hypothetical protein

Probab=80.36  E-value=12  Score=31.97  Aligned_cols=21  Identities=5%  Similarity=0.238  Sum_probs=15.1

Q ss_pred             cceEEEEEEEEcCCceEeecc
Q 010757          476 STYTTRYELSSTKSGWRITDG  496 (502)
Q Consensus       476 ~t~~vrY~L~r~~g~WkI~~~  496 (502)
                      ..++.++.++|.+|+|||...
T Consensus       101 ~~~~~t~~~~~~~g~W~I~~~  121 (128)
T TIGR02246       101 AAVRLTFVAVKRDGRWLLAAD  121 (128)
T ss_pred             cceEEEEEEEeeCCeEEEEec
Confidence            344555568888999999753

This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	502
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 6e-09
 Identities = 72/555 (12%), Positives = 153/555 (27%), Gaps = 190/555 (34%)

Query: 23  ESFMNEAFLRMTSAEQVKLFSATPNSIPA-----ETFEAYGVALALVAQAFVG------- 70
           +           S E++     + +++        T  +       + Q FV        
Sbjct: 39  QDMPKSIL----SKEEIDHIIMSKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVLRINY 91

Query: 71  -----------KQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCS 119
                      +QP ++       +    N              + + +    L + L  
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-----NVSRLQPYLKLRQALLE 146

Query: 120 L-----LV-------GK----LDECR------------LWLGLDSDKSPYRNPAIVDFVL 151
           L     ++       GK    LD C              WL L +  SP       + VL
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-------ETVL 199

Query: 152 ENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNG 211
           E         L  L   ++         R   +S+I+ ++         LR L + +   
Sbjct: 200 EM--------LQKLLYQIDPNWTS----RSDHSSNIKLRIHSIQA---ELRRLLKSKPYE 244

Query: 212 SSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLG------QGDKAVKYVEHGET 265
           +  L                VL +V+++        F L          K V       T
Sbjct: 245 NCLL----------------VLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 266 YDPVPVVETEESLTSDQNN--FAFTTDAYGTSSSDDIHGEQSITDKIKDVSVKIMCAGVA 323
              + +     +LT D+                       + +  + +D+  + +     
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLL-----------------KYLDCRPQDLPRE-VLTTNP 327

Query: 324 IGLVTLVG--LKYLPTRNISSVQQ-KEIGLAKASDIIDAG-PLLDEKLGQELPRMDARLA 379
              ++++   ++             K +   K + II++   +L+    +++      L+
Sbjct: 328 R-RLSIIAESIRDGLATW----DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR---LS 379

Query: 380 EDIVRKWQNIKSQAFGPDHSLGKLPE-VLDGQMLKVWTDRASE-----IAQLGWTYDYSL 433
             +           F P  +   +P  +L   ++  W D         + +L   + YSL
Sbjct: 380 --V-----------F-PPSA--HIPTILL--SLI--WFDVIKSDVMVVVNKL---HKYSL 416

Query: 434 LNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRI 493
           +       T+S    +  ++  ++    L    H       I      Y +  T     +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYAL----H-----RSI---VDHYNIPKTFDSDDL 464

Query: 494 T----DG---SKIVY 501
                D    S I +
Sbjct: 465 IPPYLDQYFYSHIGH 479

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	502
2cw9_A	194	Translocase of inner mitochondrial membrane; struc	92.55
4gb5_A	159	Uncharacterized protein; structural genomics, PSI-	89.07
3soy_A	145	NTF2-like superfamily protein; structural genomics	88.81
3b8l_A	163	Uncharacterized protein; putative aromatic ring hy	86.46
3gwr_A	144	Putative calcium/calmodulin-dependent protein KIN	85.88
3k7c_A	114	Putative NTF2-like transpeptidase; structural geno	85.33
3a76_A	176	Gamma-hexachlorocyclohexane dehydrochlorinase; bar	84.28
3bb9_A	148	Putative orphan protein; structural genomics, join	84.21
3f7s_A	142	Uncharacterized NTF2-like protein; structural geno	83.98
2qgu_A	211	Probable signal peptide protein; NESG, RSR89, Q8XV	80.89
2rgq_A	144	Domain of unknown function with A cystatin-like F;	80.8

>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13

Probab=92.55  E-value=0.76  Score=43.09  Aligned_cols=99  Identities=16%  Similarity=0.150  Sum_probs=58.9

Q ss_pred             CCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecC---CCceEEEEEEE--EEeeeEeccCCCccCC
Q 010757          398 HSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ---EGRHAWVEATV--KESARLTDTVHPENCD  472 (502)
Q Consensus       398 h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~---~~~rA~VeA~V--~E~a~l~~~~~~~~~~  472 (502)
                      .+.+.|.+.+++.|+..+....++.+++|..-+-+  .+.|+.+++..   .++.+.|.++.  ......+|..+.....
T Consensus        76 gD~~~Lr~~~t~~~~~~~~~~i~~r~~~g~~~~~~--~v~i~~~el~~a~~~~~~~~itV~f~~~~i~~~rd~~G~vveG  153 (194)
T 2cw9_A           76 GELDILKDWCYEATYSQLAHPIQQAKALGLQFHSR--ILDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEG  153 (194)
T ss_dssp             TCHHHHHHHBCHHHHHHHHHHHHHHHHTTCEECCE--EEEEEEEEEEEEEEETTEEEEEEEEEEEEECEEECTTSCEEEE
T ss_pred             CCHHHHHHhcCHHHHHHHHHHHHHHHHCCCccccE--EEEecccEEEEEEEeCCeeEEEEEEEEEEEEEEECCCCCEecC
Confidence            36678999999999999999999988888765443  33455555321   34544443333  2222235533322222


Q ss_pred             CCCcceEEEE--EEEEcCC------ceEeeccce
Q 010757          473 EKISTYTTRY--ELSSTKS------GWRITDGSK  498 (502)
Q Consensus       473 sy~~t~~vrY--~L~r~~g------~WkI~~~~V  498 (502)
                      +...-.+++|  .|.|..+      .|||.+.+-
T Consensus       154 ~~~~~~~v~e~W~f~R~~~~~~p~~~W~L~~iq~  187 (194)
T 2cw9_A          154 DPDKVLRMLYVWALCRDQDELNPYAAWRLLDISA  187 (194)
T ss_dssp             CTTCCEEEEEEEEEEECTTCSCGGGCEEEEEEEE
T ss_pred             CCCCceEEEEEEEEEEeCCCCCCCCCEEEEEEcc
Confidence            3334445666  5666544      399998654

>4gb5_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, snoal-like domain, unknown function; HET: PGE; 1.55A {Kribbella flavida}

Probab=89.07  E-value=0.68  Score=40.67  Aligned_cols=61  Identities=18%  Similarity=0.210  Sum_probs=31.8

Q ss_pred             EEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecccee
Q 010757          439 DSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKI  499 (502)
Q Consensus       439 ~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~Vi  499 (502)
                      ..+.|.-+|+.|++++.+...-.+...............-++.-+++|.+|+|||....+.
T Consensus        80 ~n~~I~vdgD~A~~~~~~~a~~~~~~~~~~~~~~~~~~~G~Y~d~~~r~~g~Wri~~r~~~  140 (159)
T 4gb5_A           80 TGHVVTIDSDRATIHAHVRAEHWLPAEVAGDGPDRWLVVGFYDNEAVRTADGWRLSSVKLT  140 (159)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECCHHHHTTSCCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCceEEEcCCEEEEEEEEEEEEeeccccCCCCceEEEEEEEEEEEEEEECCEEEEEEEEEE
Confidence            3333333678899888774332221111111101111122445568889999999987654

>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}

Probab=88.81  E-value=0.56  Score=41.39  Aligned_cols=57  Identities=21%  Similarity=0.256  Sum_probs=35.7

Q ss_pred             eeeEEEEEE-ecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEE-cCCceEeec
Q 010757          434 LNLTIDSVT-LSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSS-TKSGWRITD  495 (502)
Q Consensus       434 ~~l~I~sV~-~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r-~~g~WkI~~  495 (502)
                      ..+.+..++ +...|+-|.|....+.....-++|++..     ...++++.++| .+|+|||..
T Consensus        72 ~~~~~~~~~~I~v~gd~A~v~~~~~~~~~~~~~G~~~~-----~~~r~T~V~~r~~~ggWkIvh  130 (145)
T 3soy_A           72 RTLKLDAPPAIHVYGNAAVAEFDWHFTAVRRDNGQTQH-----TTGRESQVWAKIPNTGWRIVH  130 (145)
T ss_dssp             EEEEESSCCEEEEETTEEEEEEEEEEEEEETTTCCEEE-----EEEEEEEEEEEETTTEEEEEE
T ss_pred             cceEEeeeeEEEEcCCEEEEEEEEEEEEEEcCCCCeee-----eEEEEEEEEEEcCCCCEEEEE
Confidence            344555554 3345777887666666655544443333     35678888889 569999974

>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28

Probab=86.46  E-value=3  Score=36.48  Aligned_cols=48  Identities=21%  Similarity=0.153  Sum_probs=29.1

Q ss_pred             CCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecccee
Q 010757          446 EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKI  499 (502)
Q Consensus       446 ~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~Vi  499 (502)
                      +|+.|++.+.+.-  .... +....  . ....+.++.|+|.+|+|||..-.+.
T Consensus       103 ~gd~A~~~~~~~~--~~~~-~~g~~--~-~~~g~y~d~~~r~dg~WrI~~r~~~  150 (163)
T 3b8l_A          103 EGDTASMRAYVIG--MGVG-KDGRA--V-TVNGRYFFEVRRTEKGWKATRYTMD  150 (163)
T ss_dssp             CSSEEEEEEEEEE--EEEE-TTSCE--E-EEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE--EEEc-CCCCe--E-EEEEEEEEEEEEeCCEEEEEEEEEE
Confidence            5788888776643  1122 11111  1 1234677788899999999976553

>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}

Probab=85.88  E-value=2.8  Score=36.84  Aligned_cols=103  Identities=15%  Similarity=0.202  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHH--------HHhcCCCCCC---CChhhhhch--hHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEe
Q 010757          377 RLAEDIVRKWQNIK--------SQAFGPDHSL---GKLPEVLDG--QMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTL  443 (502)
Q Consensus       377 ~~A~~lVq~Wl~aK--------a~AlGp~h~~---~~L~~IL~g--~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~  443 (502)
                      +.++++++.|.++=        .+.+.++..+   ..--..+.|  ....-|+..-+    ++-+     .++++..+++
T Consensus         8 ~~~~~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g~~l~G~~ai~~~w~~~f~----~~~~-----~~i~~~~v~v   78 (144)
T 3gwr_A            8 PTPEAAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLAAPLNGRAAVAAGWRSMFG----AAGR-----FRLQVKAVHE   78 (144)
T ss_dssp             SSHHHHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTCCCEESHHHHHHHHHHHHH----HHCC-----EEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCCCCcccHHHHHHHHHHHHc----CCCc-----EEEEEEEEEE
Confidence            44666677776542        2345555322   222234554  34445544332    2222     2345555665


Q ss_pred             cCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecc
Q 010757          444 SQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDG  496 (502)
Q Consensus       444 s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~  496 (502)
                      ..+++-|.+  +..|....-.++  ..  .  ...++++.+.|.+|+|||...
T Consensus        79 ~~~gd~A~v--~~~e~~~~~~~~--g~--~--~~~r~T~V~~r~~g~Wrivhh  123 (144)
T 3gwr_A           79 IRQADHVIR--IVDEFLTIGDET--AP--R--PAILATNVYRREADGWRMVLH  123 (144)
T ss_dssp             EECSSEEEE--EEEEEEEETTCS--SC--C--CCEEEEEEEEECSSSEEEEEE
T ss_pred             EecCCEEEE--EEEEEEEecCCC--Cc--e--eeEEEEEEEEEECCEEEEEEE
Confidence            556776766  333443332221  11  1  578999999999999999753

>3k7c_A Putative NTF2-like transpeptidase; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: PGE; 2.00A {Campylobacter jejuni}

Probab=85.33  E-value=8.8  Score=33.35  Aligned_cols=71  Identities=13%  Similarity=0.201  Sum_probs=41.9

Q ss_pred             hhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEE
Q 010757          403 LPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRY  482 (502)
Q Consensus       403 L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY  482 (502)
                      ..+...|.+-.---.-....+..|---.     ++|..  .+.++++|.|.++|+     |.||..         =+.+=
T Consensus        42 ~~e~~~gki~m~~~~~~~~~ekkGGi~~-----I~~~~--~~~d~~~A~V~v~v~-----~knG~t---------~~~~i  100 (114)
T 3k7c_A           42 EKTFVSDKITQVVAENAAKAKRMGGVKD-----IQIEE--KTINKDSAKIRVLVL-----FNNDNN---------QSSNV  100 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSEEE-----EEEEE--EEECSSEEEEEEEEE-----ETTSCE---------EEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcce-----EEEEE--eeccCCEEEEEEEEE-----ECCCCc---------cccce
Confidence            3444445444333333344455665433     23333  233899999999994     655432         23677


Q ss_pred             EEEEcCCceEee
Q 010757          483 ELSSTKSGWRIT  494 (502)
Q Consensus       483 ~L~r~~g~WkI~  494 (502)
                      .|+..+|.|||.
T Consensus       101 ~LiK~dG~WkV~  112 (114)
T 3k7c_A          101 FLAKKDRKWLVL  112 (114)
T ss_dssp             EEEESSSSEEEC
T ss_pred             eeEEeCCeEEEE
Confidence            899999999975

>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}

Probab=84.28  E-value=3.4  Score=37.16  Aligned_cols=21  Identities=10%  Similarity=0.226  Sum_probs=16.8

Q ss_pred             EEEEEEEEcCCceEeecccee
Q 010757          479 TTRYELSSTKSGWRITDGSKI  499 (502)
Q Consensus       479 ~vrY~L~r~~g~WkI~~~~Vi  499 (502)
                      ++++.|+|.+|+|||..-.++
T Consensus       132 ry~d~l~r~dg~WrI~~r~~~  152 (176)
T 3a76_A          132 VFTDEYERRDGVWKFSKRNAC  152 (176)
T ss_dssp             EEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEEEECCEEEEEEEEEE
Confidence            566678899999999987654

>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16

Probab=84.21  E-value=2.3  Score=36.80  Aligned_cols=43  Identities=16%  Similarity=0.110  Sum_probs=25.1

Q ss_pred             CCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEE-EEcCCceEeec
Q 010757          446 EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYEL-SSTKSGWRITD  495 (502)
Q Consensus       446 ~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L-~r~~g~WkI~~  495 (502)
                      +|+.|.+..+....  ....|.+     .....+.++.| +|.+|+|||..
T Consensus       101 ~gd~A~~~~~~~~~--~~~~G~~-----~~~~~r~T~v~~~k~~g~WkIvh  144 (148)
T 3bb9_A          101 TGDIAISTSISHAQ--GEYKGKS-----IDSMTMETLVLIKQADGRWKITH  144 (148)
T ss_dssp             ETTEEEEEEEEEEE--ECCC--C-----EEEEEEEEEEEEECTTSCEEEEE
T ss_pred             cCCEEEEEEEEEEe--eeeCCcc-----cccceEEEEEEeEEcCCcEEEEE
Confidence            46677775544322  2222221     22456778888 88899999975

>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}

Probab=83.98  E-value=2.3  Score=36.18  Aligned_cols=20  Identities=5%  Similarity=0.215  Sum_probs=16.1

Q ss_pred             cceEEEEEEEEcCCceEeec
Q 010757          476 STYTTRYELSSTKSGWRITD  495 (502)
Q Consensus       476 ~t~~vrY~L~r~~g~WkI~~  495 (502)
                      ..++.++.+.|.+|+|||..
T Consensus       103 ~~~r~T~v~~r~~g~W~ivh  122 (142)
T 3f7s_A          103 GFMRATVGYRRQGGQWQVIH  122 (142)
T ss_dssp             EEEEEEEEEEEETTEEEEEE
T ss_pred             eeeEEEEEEEEeCCEEEEEE
Confidence            45677777999999999964

>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}

Probab=80.89  E-value=1.4  Score=41.77  Aligned_cols=50  Identities=14%  Similarity=0.310  Sum_probs=33.4

Q ss_pred             eeeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeeccce
Q 010757          434 LNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSK  498 (502)
Q Consensus       434 ~~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~V  498 (502)
                      .+++|...+...+++++.|..+|      .++|         ..+.|.|.|.+.+|+|||.|..|
T Consensus       119 q~i~v~~~~~~~~~~~~~V~t~i------~~~g---------~~i~v~y~l~~~~g~WkvyDv~i  168 (211)
T 2qgu_A          119 QTVAYKPFRAAADDTDVVVRSTV------NNNG---------EPVALDYRVEKSPNGWKVYDINI  168 (211)
T ss_dssp             CEEEECCCCSCTTCSEEEEEEEE------EETT---------EEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CeEEEeccccCCCCCeEEEEEEE------EeCC---------CeEEEEEEEEEcCCceEEEEEEE
Confidence            44455555433456678886666      2222         23579999998899999998865

>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25

Probab=80.80  E-value=5.1  Score=34.42  Aligned_cols=55  Identities=5%  Similarity=0.064  Sum_probs=30.8

Q ss_pred             EEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecccee
Q 010757          437 TIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKI  499 (502)
Q Consensus       437 ~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~Vi  499 (502)
                      .|..+.|..+++.|+++..+.    ++....  .  .....-+.++.|+|.+|+|||..-.++
T Consensus        72 ~i~n~~i~~~~d~a~~~~~~~----~~~~~~--~--~~~~~g~y~d~~~r~dg~Wri~~r~~~  126 (144)
T 2rgq_A           72 CSSNAIIQGNYDEATMESYLT----VVNRED--L--NRAGSAFVKDQVRKINGKWYLILRQIE  126 (144)
T ss_dssp             EEEEEEEEECSSEEEEEEEEE----EEESSS--S--CEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ecCCeEEEEeCCEEEEEEEEE----EEEecC--C--eEEEEEEEEEEEEEECCEEEEEEEEEE
Confidence            355555544555666654442    232211  1  111223566688899999999986653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	502
d2cw9a1	182	Translocase of inner mitochondrial membrane TIMM44	91.98
d3b8la1	144	Uncharacterized protein Saro3538 {Novosphingobium	90.01
d3cnxa1	153	Uncharacterized protein SAV4671 {Streptomyces aver	89.21
d2ux0a1	135	Association domain of calcium/calmodulin-dependent	89.19
d2r4ia1	122	Uncharacterized protein CHU142 {Cytophaga hutchins	88.36
d2rfra1	153	Uncharacterized protein Saro3722 {Novosphingobium	88.24
d1idpa_	147	Scytalone dehydratase {Fungus (Magnaporthe grisea)	86.11
d3d9ra1	132	Uncharacterized protein ECA1476 {Pectobacterium at	84.25
d2fxta1	192	Translocase of inner mitochondrial membrane TIMM44	82.31
d3ef8a1	149	Uncharacterized protein Saro1465 {Novosphingobium	81.9
d2f86b1	129	Association domain of calcium/calmodulin-dependent	81.73
d3bb9a1	121	Uncharacterized protein Sfri1973 {Shewanella frigi	80.89
d3ejva1	159	Uncharacterized protein Saro2766 {Novosphingobium	80.81
d2rgqa1	133	Uncharacterized protein NpunR3134 {Nostoc punctifo	80.19

>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.67  Score=40.74  Aligned_cols=98  Identities=16%  Similarity=0.168  Sum_probs=60.6

Q ss_pred             CCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecC---CCceEEEEEEE--EEeeeEeccCCCccCC
Q 010757          398 HSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ---EGRHAWVEATV--KESARLTDTVHPENCD  472 (502)
Q Consensus       398 h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~---~~~rA~VeA~V--~E~a~l~~~~~~~~~~  472 (502)
                      .+.+.|..+++..+++.-......-+.+|......+.  .|..+++..   .++.+.|.++.  +....++|..+.....
T Consensus        65 gD~~~L~~llt~~~~~~f~~~i~~r~~~g~~~~~~~i--~i~~~ei~~a~~~~~~~~itV~F~~~qi~~~~D~~G~iveG  142 (182)
T d2cw9a1          65 GELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRIL--DIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEG  142 (182)
T ss_dssp             TCHHHHHHHBCHHHHHHHHHHHHHHHHTTCEECCEEE--EEEEEEEEEEEEETTEEEEEEEEEEEEECEEECTTSCEEEE
T ss_pred             cCHHHHHHHhhHHHHHHHHHHHHHHHHCCCeeeeeec--ccccceeEEEEeeCCceEEEEEEEEEehhheecCCCCEecC
Confidence            5668999999999999999988888888887777644  565555422   34555543333  1122234543322223


Q ss_pred             CCCcceEEEEE--EEEcC------CceEeeccc
Q 010757          473 EKISTYTTRYE--LSSTK------SGWRITDGS  497 (502)
Q Consensus       473 sy~~t~~vrY~--L~r~~------g~WkI~~~~  497 (502)
                      +...-.++.|.  |.|+-      +.|+|.+.+
T Consensus       143 ~~d~i~~v~e~W~F~R~~~s~~Pn~~W~L~~iq  175 (182)
T d2cw9a1         143 DPDKVLRMLYVWALCRDQDELNPYAAWRLLDIS  175 (182)
T ss_dssp             CTTCCEEEEEEEEEEECTTCSCGGGCEEEEEEE
T ss_pred             CCCCceEEEEEEEEEEcCcCCCCCCCEEEEEec
Confidence            34444555554  55632      459998865

>d3b8la1 d.17.4.28 (A:1-144) Uncharacterized protein Saro3538 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein Saro3538
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=90.01  E-value=1.1  Score=36.84  Aligned_cols=55  Identities=18%  Similarity=0.182  Sum_probs=33.3

Q ss_pred             EEEEEec-CCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeeccce
Q 010757          438 IDSVTLS-QEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSK  498 (502)
Q Consensus       438 I~sV~~s-~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~V  498 (502)
                      +.++.+. .+++.|++...+......- ++     ......-+++..++|.+|+|||..-.+
T Consensus        75 ~~n~~i~~~~~~~A~~~~~~~~~~~~~-~~-----~~~~~~g~Y~d~~~r~~g~WrI~~r~~  130 (144)
T d3b8la1          75 LTNFAVTGYEGDTASMRAYVIGMGVGK-DG-----RAVTVNGRYFFEVRRTEKGWKATRYTM  130 (144)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEEEEEET-TS-----CEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             eecccceecCCCEEEEEEEEEEEEEcc-cC-----ceEEEEEEEEEEEEEECCEEEEEEEEE
Confidence            3444432 3788999887775443221 11     122233467778999999999987544

>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SAV4671-like
domain: Uncharacterized protein SAV4671
species: Streptomyces avermitilis [TaxId: 33903]

Probab=89.21  E-value=0.37  Score=40.47  Aligned_cols=57  Identities=16%  Similarity=0.168  Sum_probs=29.8

Q ss_pred             EEEEEEecCCCceEEEEEEEEEeeeEe--ccCCCccC-CCCCcceEEEEEEEEcCCceEeec
Q 010757          437 TIDSVTLSQEGRHAWVEATVKESARLT--DTVHPENC-DEKISTYTTRYELSSTKSGWRITD  495 (502)
Q Consensus       437 ~I~sV~~s~~~~rA~VeA~V~E~a~l~--~~~~~~~~-~sy~~t~~vrY~L~r~~g~WkI~~  495 (502)
                      .+..+++...|+.|.|..  .|.-...  +....... .......++++.|+|++|+|||..
T Consensus        86 ~~~~~~v~v~gD~A~v~~--~~~v~~~~~~~~~~~~~g~~~~~~~r~T~v~~k~dg~Wkivh  145 (153)
T d3cnxa1          86 FLTDVHVSVTGDTALVTC--TENILSGGPPPDDSDELGPLVGQLVVATNVFRRTPDGWKLWS  145 (153)
T ss_dssp             EEEEEEEEEETTEEEEEE--EEEEEEEC---------CCCEEEEEEEEEEEECCTTCCEEEE
T ss_pred             eEEEeEEEEeCcEEEEEE--EEEEEeecccccccccCCcccceeEEEEEEEEEECCEEEEEE
Confidence            445555545677777643  3332222  11111111 112235577889999999999964

>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
domain: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.19  E-value=0.51  Score=37.35  Aligned_cols=45  Identities=13%  Similarity=0.127  Sum_probs=27.3

Q ss_pred             CCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeec
Q 010757          446 EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD  495 (502)
Q Consensus       446 ~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~  495 (502)
                      .|+-+.|...+........+|.+..     ...+.+.+|+|.+|+|||..
T Consensus        85 ~gddaa~~~~~~~~~~~~~~g~~~~-----~~~r~T~V~~r~~g~Wkivh  129 (135)
T d2ux0a1          85 IGEDAACIAYIRLTQYIDGQGRPRT-----SQSEETRVWHRRDGKWLNVH  129 (135)
T ss_dssp             CSTTEEEEEEEEEEEEECTTSCEEE-----EEEEEEEEEEEETTEEEEEE
T ss_pred             EcCcEEEEEEEEEEEEeccCCceee-----EeEEEEEEEEEECCEEEEEE
Confidence            3444555455544444444443332     45677888899999999964

>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: CHU142-like
domain: Uncharacterized protein CHU142
species: Cytophaga hutchinsonii [TaxId: 985]

Probab=88.36  E-value=1.1  Score=35.12  Aligned_cols=54  Identities=11%  Similarity=0.089  Sum_probs=31.7

Q ss_pred             EEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeeccc
Q 010757          437 TIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGS  497 (502)
Q Consensus       437 ~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~  497 (502)
                      ++..+.+...|+.|.+..++  ..++..+|.+.     ....+++.+++|.+|+|||....
T Consensus        64 ~~~~~~v~~~gd~Av~~~~~--~~~~~~~g~~~-----~~~~r~t~V~~k~~g~Wkiv~~h  117 (122)
T d2r4ia1          64 VPSDYIIRIIHDTVVVSVNI--EIKGEYMEHTL-----DNTFRYLRVWKLFDGNWKVIAGS  117 (122)
T ss_dssp             EEEEEEEEEETTEEEEEEEE--EEEEEETTEEE-----EEEEEEEEEEEEETTEEEEEEEE
T ss_pred             eeeeeEEEEEeceeeEeeEE--EEEEecCCCcc-----eeeEEEEEEEEEECCEEEEEEEE
Confidence            34444443446777665544  33343333322     24556777799999999997643

>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein Saro3722
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=88.24  E-value=0.25  Score=41.05  Aligned_cols=47  Identities=17%  Similarity=0.249  Sum_probs=30.2

Q ss_pred             CCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeeccce
Q 010757          446 EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSK  498 (502)
Q Consensus       446 ~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~V  498 (502)
                      +|+.|++.+.+....... ++.     ......+.+|+|+|.+|+|||+.-.+
T Consensus        92 ~~d~a~~~~~~~~~~~~~-~~~-----~~~~~g~y~d~~~r~~g~WkI~~r~~  138 (153)
T d2rfra1          92 EGDTATARCHSVVFRCVS-GTF-----GSHRVSANRWTFRRTPAGWRAVRREN  138 (153)
T ss_dssp             ETTEEEEEEEEEEEEEET-TEE-----EEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCeEEEEEEEEEEEEeC-CCC-----EEEEEEEEEEEEEEECCEEEEEEEEE
Confidence            567788877774332222 111     12234578999999999999997543

>d1idpa_ d.17.4.1 (A:) Scytalone dehydratase {Fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Scytalone dehydratase
domain: Scytalone dehydratase
species: Fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.11  E-value=0.78  Score=38.38  Aligned_cols=68  Identities=4%  Similarity=-0.096  Sum_probs=38.1

Q ss_pred             EEeeeeeeEEEEEEecC-CCceEEEEEEEEEeeeEeccCCC-ccCCCCCcceEEEEEEEEcCCceEeeccce
Q 010757          429 YDYSLLNLTIDSVTLSQ-EGRHAWVEATVKESARLTDTVHP-ENCDEKISTYTTRYELSSTKSGWRITDGSK  498 (502)
Q Consensus       429 ~~Y~l~~l~I~sV~~s~-~~~rA~VeA~V~E~a~l~~~~~~-~~~~sy~~t~~vrY~L~r~~g~WkI~~~~V  498 (502)
                      +.-+.|  -|....|.- ++++|.++..++..-..+...+. ..........++..+++|.+|+|||+..+.
T Consensus        72 ~~~t~H--~~~n~~I~~~~d~~A~g~~y~~a~h~~~~~~~~~~~~~~g~~~g~Y~d~y~k~dG~WkIs~~~~  141 (147)
T d1idpa_          72 TLRTQH--FIGGTRWEKVSEDEVIGYHQLRVPHQRYKDTTMKEVTMKGHAHSANLHWYKKIDGVWKFAGLKP  141 (147)
T ss_dssp             TEEECC--EEEEEEEEEEETTEEEEEEEEEEEEEEESSTTCCCEEEEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             cceEEE--EecCeEEEEcCCCEEEEEEEEEEEEEEecCCCcceEEeeeeeEEEEEEEEEEeCCEEEEEEEEe
Confidence            333445  344444322 46689988888655555533322 221111122355667889999999997654

>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: ECA1476-like
domain: Uncharacterized protein ECA1476
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=84.25  E-value=1.4  Score=34.80  Aligned_cols=45  Identities=13%  Similarity=0.262  Sum_probs=27.0

Q ss_pred             CCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEc-CCceEeec
Q 010757          446 EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSST-KSGWRITD  495 (502)
Q Consensus       446 ~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~-~g~WkI~~  495 (502)
                      +|+.|.+..+.....+.-+++....     ...+..+.+.|+ +|+|||..
T Consensus        79 ~~d~A~~~~~~~~~~~~~~~g~~~~-----~~~~~~~v~~r~~dG~Wki~~  124 (132)
T d3d9ra1          79 SADWAFVRSATEGTETNKATGVVTP-----AAYQELFLLRKSATGSWQTAR  124 (132)
T ss_dssp             ETTEEEEEEEEEEEEEETTTCCEEE-----EEEEEEEEEEECTTSCEEEEE
T ss_pred             cCCceEEEEEEEEEEEecCCCccee-----cceeEEEEEEECCCCcEEEEE
Confidence            5778888777755544433333222     334455577786 58899973

>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.31  E-value=3.8  Score=36.12  Aligned_cols=97  Identities=12%  Similarity=0.153  Sum_probs=60.2

Q ss_pred             CCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEe-----cCCCceEEEEEEE--EEeeeEecc-CCCc
Q 010757          398 HSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTL-----SQEGRHAWVEATV--KESARLTDT-VHPE  469 (502)
Q Consensus       398 h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~-----s~~~~rA~VeA~V--~E~a~l~~~-~~~~  469 (502)
                      .+.+.|...++..++........+-+++|.....++.  .|..+++     ....+.+.|.++.  ++...+.++ .+..
T Consensus        75 GD~~~Lk~lls~~vy~~f~~~I~~r~~~g~~~~~~ii--~I~~~~I~~a~~~~~~~~~~itV~F~t~qi~~~~d~k~G~I  152 (192)
T d2fxta1          75 GDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRIL--DIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEI  152 (192)
T ss_dssp             TCHHHHHHHBCHHHHHHHHHHHHHHHHTTEECCEEEC--CCEEEEEEEEEEETTTTEEEEEEEEEECEEECCEETTTBTT
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHHHHHHcCCeeeEEEe--ccceeEEEEEEEecCCCeEEEEEEEEEEEEEEEEecCCCcE
Confidence            5667899999999999999999998999987777655  4555553     2234455554443  222223342 2322


Q ss_pred             cCCCCCcceEEEEEEEEc--CC--------ceEeecc
Q 010757          470 NCDEKISTYTTRYELSST--KS--------GWRITDG  496 (502)
Q Consensus       470 ~~~sy~~t~~vrY~L~r~--~g--------~WkI~~~  496 (502)
                      ...+...-.+|+|.....  -+        .|||.++
T Consensus       153 ieGd~d~i~~v~d~WtF~R~~~~~~pn~~~~W~LiE~  189 (192)
T d2fxta1         153 AAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILEF  189 (192)
T ss_dssp             SSCSCCCCCCEEEEEEEECCSSSCTTSSSTTCEEEEE
T ss_pred             ecCCCCccEEEEEEEEEEEcCccCCCCCCCCEEEEEe
Confidence            233445555677665553  22        3999876

>d3ef8a1 d.17.4.28 (A:1-149) Uncharacterized protein Saro1465 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein Saro1465
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=81.90  E-value=2.7  Score=34.26  Aligned_cols=48  Identities=17%  Similarity=0.157  Sum_probs=28.0

Q ss_pred             CCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeeccce
Q 010757          446 EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSK  498 (502)
Q Consensus       446 ~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~V  498 (502)
                      +++.|.+...+.-..... .+++..    ...-++..+++|.+|+|||..-++
T Consensus        82 ~~~~a~~~~~~~~~~~~~-~~~~~~----~~~g~Y~d~~~r~~g~Wki~~r~~  129 (149)
T d3ef8a1          82 SETEANVRSVVLAIHRYT-KERPDG----ILYGQYFDTVVKVDGQWKFKRREL  129 (149)
T ss_dssp             ETTEEEEEEEEEEEEEES-SSSCCE----EEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCceeEEEEEEEEEEEec-CCCceE----EEEEEEEEEEEEECCEEEEEEEEE
Confidence            456777777664332222 222221    122356677888999999987543

>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
domain: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.73  E-value=1.7  Score=33.54  Aligned_cols=20  Identities=10%  Similarity=0.136  Sum_probs=16.5

Q ss_pred             cceEEEEEEEEcCCceEeec
Q 010757          476 STYTTRYELSSTKSGWRITD  495 (502)
Q Consensus       476 ~t~~vrY~L~r~~g~WkI~~  495 (502)
                      ...+++.+|+|.+|+|||..
T Consensus       105 ~~~r~T~V~~k~~g~Wkivh  124 (129)
T d2f86b1         105 RQSQESRVWSKKQGRWVCVH  124 (129)
T ss_dssp             EEEEEEEEEEEETTEEEEEE
T ss_pred             ccEEEEEEEEEECCEEEEEE
Confidence            55678899999999999853

>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein Sfri1973
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.89  E-value=2.1  Score=33.10  Aligned_cols=44  Identities=16%  Similarity=0.114  Sum_probs=22.9

Q ss_pred             CCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEc-CCceEeec
Q 010757          445 QEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSST-KSGWRITD  495 (502)
Q Consensus       445 ~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~-~g~WkI~~  495 (502)
                      ..|+.|.+.....-.  ...++++..     ..-+..+.|.|+ +|.|||..
T Consensus        73 ~~gd~A~~~~~~~~~--~~~~g~~~~-----~~~~~t~v~~r~~dG~WkIv~  117 (121)
T d3bb9a1          73 ITGDIAISTSISHAQ--GEYKGKSID-----SMTMETLVLIKQADGRWKITH  117 (121)
T ss_dssp             EETTEEEEEEEEEEE--ECCC--CEE-----EEEEEEEEEEECTTSCEEEEE
T ss_pred             EcCCeeEEEEEEEEE--eeccCCcce-----eeEEEEEEEEEccCCeEEEEE
Confidence            356777776655332  332222221     223445566666 68899974

>d3ejva1 d.17.4.28 (A:2-160) Uncharacterized protein Saro2766 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein Saro2766
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=80.81  E-value=2.2  Score=35.62  Aligned_cols=62  Identities=19%  Similarity=0.261  Sum_probs=33.6

Q ss_pred             EEEEEEecCCCceEEEEEEEEEeeeEeccCCCccC---CC--CC------cceEEEEEEEEcCCceEeecccee
Q 010757          437 TIDSVTLSQEGRHAWVEATVKESARLTDTVHPENC---DE--KI------STYTTRYELSSTKSGWRITDGSKI  499 (502)
Q Consensus       437 ~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~---~s--y~------~t~~vrY~L~r~~g~WkI~~~~Vi  499 (502)
                      -|.++.|.-+|++|++++.+..-...-.+ .....   ..  ..      ..-+++.+|+|.+|+|||....+.
T Consensus        79 ~~~n~~I~v~gd~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~Y~d~~~r~~g~WrI~~r~~~  151 (159)
T d3ejva1          79 VVNAPIIVIEGDHAVLDAQFMVFSILAAE-VPDGGWPTGTFGAQGRIVPIEAGQYRLTLRTVADGWVISAMRIE  151 (159)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEEEECC-CCTTCCCTTCCSCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccCCeEEEEeCCeEEEEEEEEEEEeeccc-cccCccceeecccCCCceEEEEEEEEEEEEEECCEEEEEEEEEE
Confidence            34444444467889998887544333211 11100   00  00      112355668899999999987653

>d2rgqa1 d.17.4.25 (A:1-133) Uncharacterized protein NpunR3134 {Nostoc punctiforme [TaxId: 272131]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rv3472-like
domain: Uncharacterized protein NpunR3134
species: Nostoc punctiforme [TaxId: 272131]

Probab=80.19  E-value=2.5  Score=34.07  Aligned_cols=47  Identities=6%  Similarity=0.035  Sum_probs=28.9

Q ss_pred             CCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecccee
Q 010757          445 QEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKI  499 (502)
Q Consensus       445 ~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~Vi  499 (502)
                      .+|+.|++...+...    ..+...    ...+-+++-+++|.+|+|||..-.|.
T Consensus        79 ~~gd~A~~~~~~~~~----~~~~~~----~~~~g~Y~D~~~k~dg~W~i~~R~~~  125 (133)
T d2rgqa1          79 GNYDEATMESYLTVV----NREDLN----RAGSAFVKDQVRKINGKWYLILRQIE  125 (133)
T ss_dssp             ECSSEEEEEEEEEEE----ESSSSC----EEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EcCCEEEEEEEEEEE----ecCCce----EEEEEEEEEEEEEECCEEEEEEEEEE
Confidence            367788887776433    222212    12233455558899999999876653