Citrus Sinensis ID: 010766
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 502 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LNJ0 | 711 | Probable cyclic nucleotid | yes | no | 0.978 | 0.690 | 0.712 | 0.0 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.970 | 0.699 | 0.702 | 0.0 | |
| O65717 | 716 | Cyclic nucleotide-gated i | no | no | 0.986 | 0.691 | 0.707 | 0.0 | |
| Q9SKD7 | 706 | Probable cyclic nucleotid | no | no | 0.972 | 0.691 | 0.695 | 0.0 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.958 | 0.656 | 0.581 | 1e-170 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.984 | 0.661 | 0.576 | 1e-169 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.954 | 0.668 | 0.578 | 1e-165 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.970 | 0.659 | 0.558 | 1e-162 | |
| Q9FXH6 | 753 | Putative cyclic nucleotid | no | no | 0.964 | 0.642 | 0.546 | 1e-161 | |
| Q9SKD6 | 621 | Cyclic nucleotide-gated i | no | no | 0.906 | 0.732 | 0.603 | 1e-158 |
| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function desciption |
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Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/508 (71%), Positives = 413/508 (81%), Gaps = 17/508 (3%)
Query: 2 LKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYS 61
LK I QYVPRI R+YPLY +V RTSGI+TETAWAGAA NL LYMLASH+FGA WYL S
Sbjct: 206 LKFSIIAQYVPRILRMYPLYTEVTRTSGIVTETAWAGAAWNLSLYMLASHVFGALWYLIS 265
Query: 62 IERQDSCWRDVCRKLNDTSNCTTN-LYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFG 120
+ER+D CW++ C K T C LYC +N L SCPF+ P +I NS++FNFG
Sbjct: 266 VEREDRCWQEACEK---TKGCNMKFLYCENDRNVSNNFLTTSCPFLDPGDITNSTIFNFG 322
Query: 121 ISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVL 180
I DAL+S VVE HDF KKFFYCFWWGLRNLS+LGQNL+TS FVGE+ FAI I ISGLVL
Sbjct: 323 IFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKFVGEIIFAISICISGLVL 382
Query: 181 FALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGV 240
FALLIGNMQKYLESTTVR EEMRV+++DAEQWMSHRMLPE+LR RIRRYEQY+WQETRGV
Sbjct: 383 FALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGV 442
Query: 241 EEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVR 300
EEE LLRNLPKDLRRDIKRHLC DLL +VP+FE MD+QLLDA+CD L+PVLYTE S+++R
Sbjct: 443 EEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIR 502
Query: 301 EGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLS 360
EGDPV EMLFVMRG LVS TT GGR+GFFNAV LKA DFCGE LL WALDPQSSS+ P+S
Sbjct: 503 EGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPIS 562
Query: 361 TRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRR 420
TRTVQALTEVEAF+L A+DLKSVASQFRRLHSKQLQH FRF+SVQWRTW+ FIQAAWRR
Sbjct: 563 TRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQLQHTFRFYSVQWRTWSVSFIQAAWRR 622
Query: 421 HSKKKLAQSLQEAEDRLQDALAT---EAGALT-----SLGATMYASKFAANLLHPLRLRQ 472
+ ++KLA+SL++ EDRL++ALA+ E A T SLG +YAS+FA+N LH LR
Sbjct: 623 YCRRKLAKSLRDEEDRLREALASQDKEHNAATVSSSLSLGGALYASRFASNALH--NLRH 680
Query: 473 NGSSGTRLPQRLLPPLIPQKPAEPDFTA 500
N S+ LP R PL+PQKP EPDFTA
Sbjct: 681 NISN---LPPRYTLPLLPQKPTEPDFTA 705
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Probable cyclic nucleotide-gated ion channel. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
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| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
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| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9SKD6|CNG11_ARATH Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 502 | ||||||
| 255545024 | 838 | Cyclic nucleotide-gated ion channel, put | 0.980 | 0.587 | 0.721 | 0.0 | |
| 224127923 | 670 | predicted protein [Populus trichocarpa] | 0.984 | 0.737 | 0.706 | 0.0 | |
| 224064230 | 717 | predicted protein [Populus trichocarpa] | 0.984 | 0.688 | 0.708 | 0.0 | |
| 356509281 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.982 | 0.689 | 0.716 | 0.0 | |
| 356516029 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.982 | 0.689 | 0.718 | 0.0 | |
| 356551532 | 718 | PREDICTED: cyclic nucleotide-gated ion c | 0.984 | 0.688 | 0.706 | 0.0 | |
| 255564733 | 630 | Cyclic nucleotide-gated ion channel, put | 0.988 | 0.787 | 0.699 | 0.0 | |
| 225462733 | 709 | PREDICTED: cyclic nucleotide-gated ion c | 0.978 | 0.692 | 0.713 | 0.0 | |
| 297842982 | 706 | ATCNGC10 [Arabidopsis lyrata subsp. lyra | 0.978 | 0.695 | 0.714 | 0.0 | |
| 334182216 | 711 | cyclic nucleotide gated channel [Arabido | 0.978 | 0.690 | 0.712 | 0.0 |
| >gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/503 (72%), Positives = 418/503 (83%), Gaps = 11/503 (2%)
Query: 1 MLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLY 60
+LK ++ QY+PR RIYPLY +V RTSGILTETAWAGAA NLFLYMLASH+ GA WYL
Sbjct: 220 LLKFVVLFQYIPRFMRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLV 279
Query: 61 SIERQDSCWRDVCRKLNDTSNCTTN-LYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNF 119
SIER+ CW+ C +D C + LYCG G N T L G+CP +I N+ +FNF
Sbjct: 280 SIERETVCWKKAC---DDHIGCVRDSLYCGNQAGVNKTFLDGACPV----QIPNTEIFNF 332
Query: 120 GISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLV 179
GI +DALQS VV HDFPKKFFYCFWWGLRNLSSLGQNL+TSTFV E+ FA+ ISI GLV
Sbjct: 333 GIFLDALQSGVVATHDFPKKFFYCFWWGLRNLSSLGQNLETSTFVWEICFAVSISIFGLV 392
Query: 180 LFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRG 239
LF+ LIGNMQ YL+STT RLEEMRVKR+DAEQWMSHR+LPENLR+RIRR+EQYKWQETRG
Sbjct: 393 LFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRERIRRHEQYKWQETRG 452
Query: 240 VEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIV 299
V+EE L+ NLP+DLRRDIKRHLC LLMRVPMFEKMD+QLLDAMCD LKP LYTE+S+IV
Sbjct: 453 VDEENLVCNLPRDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPALYTEESYIV 512
Query: 300 REGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPL 359
REGDPV+EMLF+MRG L++ TT GGRTGFFN+ YLKAGDFCGE LLTWALDP SSSN P+
Sbjct: 513 REGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPNSSSNLPI 572
Query: 360 STRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWR 419
STRTVQ LTEVEAF+LMADDLK VASQFRRLHSKQL+H FRF+S QWRTWAACFIQAAWR
Sbjct: 573 STRTVQTLTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWR 632
Query: 420 RHSKKKLAQSLQEAEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSGTR 479
R+SKKKL +SL++ E+RLQDALA +G SLGAT+YAS+FAAN L LR+ G+ R
Sbjct: 633 RYSKKKLEESLRQEENRLQDALAKTSGNSPSLGATIYASRFAANALRA--LRRTGTRKAR 690
Query: 480 LPQRLLPPLIPQKPAEPDFTAKD 502
L +R +PP++ QKPAEPDFTA++
Sbjct: 691 LLER-VPPMLLQKPAEPDFTAEE 712
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127923|ref|XP_002320197.1| predicted protein [Populus trichocarpa] gi|222860970|gb|EEE98512.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224064230|ref|XP_002301407.1| predicted protein [Populus trichocarpa] gi|222843133|gb|EEE80680.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255564733|ref|XP_002523361.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223537449|gb|EEF39077.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297842982|ref|XP_002889372.1| ATCNGC10 [Arabidopsis lyrata subsp. lyrata] gi|297335214|gb|EFH65631.1| ATCNGC10 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|334182216|ref|NP_001184885.1| cyclic nucleotide gated channel [Arabidopsis thaliana] gi|38503202|sp|Q9LNJ0.2|CNG10_ARATH RecName: Full=Probable cyclic nucleotide-gated ion channel 10; AltName: Full=CaM-regulated potassium ion channel; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 10 gi|332189153|gb|AEE27274.1| cyclic nucleotide gated channel [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 502 | ||||||
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.984 | 0.689 | 0.698 | 6.9e-189 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.930 | 0.670 | 0.732 | 2.4e-186 | |
| TAIR|locus:2039084 | 706 | CNGC3 "cyclic nucleotide gated | 0.974 | 0.692 | 0.685 | 4.1e-184 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.986 | 0.662 | 0.574 | 1.1e-156 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.968 | 0.663 | 0.577 | 6.5e-154 | |
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.954 | 0.668 | 0.568 | 4.7e-151 | |
| TAIR|locus:2039099 | 621 | CNGC11 "cyclic nucleotide-gate | 0.906 | 0.732 | 0.603 | 1.8e-149 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.980 | 0.666 | 0.557 | 2.7e-148 | |
| TAIR|locus:2013139 | 753 | CNGC8 "cyclic nucleotide gated | 0.992 | 0.661 | 0.545 | 6.6e-145 | |
| TAIR|locus:2062814 | 678 | CNGC15 "cyclic nucleotide-gate | 0.892 | 0.660 | 0.572 | 1.5e-140 |
| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1831 (649.6 bits), Expect = 6.9e-189, P = 6.9e-189
Identities = 352/504 (69%), Positives = 409/504 (81%)
Query: 1 MLKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLY 60
MLK I+F QY+PR RIYPLY +V RTSGILTETAWAGAA NLFLYMLASH+FGA WYL+
Sbjct: 221 MLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLF 280
Query: 61 SIERQDSCWRDVCRKLNDTSNCTTNL-YCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNF 119
SIER+ CW+ C + N C + L YC N L+ SCP +P N+++F+F
Sbjct: 281 SIERETVCWKQACERNNPP--CISKLLYCDPETAGGNAFLNESCPIQTP----NTTLFDF 334
Query: 120 GISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLV 179
GI +DALQS VVE DFP+KFFYCFWWGL+NLSSLGQNLKTST++ E+ FA+FISI+GLV
Sbjct: 335 GIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLV 394
Query: 180 LFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRG 239
LF+ LIGNMQ YL+STT RLEEMRVKR+DAEQWMSHR+LPENLR RIRRYEQYKWQETRG
Sbjct: 395 LFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRG 454
Query: 240 VEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIV 299
V+EE LL NLPKDLRRDIKRHLC LLMRVPMFEKMD+QLLDA+CD L+PVLYTE+S+IV
Sbjct: 455 VDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIV 514
Query: 300 REGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPL 359
REGDPV+EMLF+MRG L++ TT GGRTGF N+ YL AGDFCGE LLTWALDP SSSN P+
Sbjct: 515 REGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPI 574
Query: 360 STRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWR 419
STRTV+AL EVEAF+L ADDLK VASQFRRLHSKQL+H FR++S QW+TWAACFIQAAWR
Sbjct: 575 STRTVRALMEVEAFALKADDLKFVASQFRRLHSKQLRHTFRYYSQQWKTWAACFIQAAWR 634
Query: 420 RHSKKKLAQSLQEAEDRLQDALATEA-GALTSLGATMYASKFAANLLHPLRLRQNGSSGT 478
R+ KKKL +SL+E E+RLQDALA EA G+ SLGAT+YAS+FAAN+L +R ++GS
Sbjct: 635 RYIKKKLEESLKEEENRLQDALAKEACGSSPSLGATIYASRFAANILRTIR--RSGSVRK 692
Query: 479 XXXXXXXXXXXXXKPAEPDFTAKD 502
KPAEPDF + D
Sbjct: 693 PRMPERMPPMLLQKPAEPDFNSDD 716
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| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LNJ0 | CNG10_ARATH | No assigned EC number | 0.7125 | 0.9780 | 0.6905 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00021581 | hypothetical protein (717 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 502 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 4e-18 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 1e-12 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 9e-08 | |
| COG0664 | 214 | COG0664, Crp, cAMP-binding proteins - catabolite g | 1e-06 | |
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 2e-06 | |
| pfam00520 | 194 | pfam00520, Ion_trans, Ion transport protein | 2e-06 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 4e-18
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 19/133 (14%)
Query: 271 MFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTYGGRTGFF 329
+F +DD+ L+ + D L+ + I+R+GDP + + V+ G++ V GR
Sbjct: 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60
Query: 330 NAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRR 389
+L GD GE L + TV+ALT+ E L D FRR
Sbjct: 61 G--FLGPGDLFGELALL---------GNGPRSATVRALTDSELLVLPRSD-------FRR 102
Query: 390 LHSKQLQHAFRFH 402
L + + A R
Sbjct: 103 LLQEYPELARRLL 115
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In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
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| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
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| >gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
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| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
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| >gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 502 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.87 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.85 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.83 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.78 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.77 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.7 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.7 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.69 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.5 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.44 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.41 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.27 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.23 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 99.23 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.21 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.2 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.2 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.16 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 98.75 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.75 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 98.68 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 98.56 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 98.44 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 98.37 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.19 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 98.13 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 98.07 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.99 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.95 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 97.77 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 97.73 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 97.7 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 96.86 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 96.74 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 96.68 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 95.8 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 95.31 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 94.0 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 91.76 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 87.89 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 87.75 | |
| COG4709 | 195 | Predicted membrane protein [Function unknown] | 82.89 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 81.96 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-69 Score=570.58 Aligned_cols=444 Identities=52% Similarity=0.843 Sum_probs=381.1
Q ss_pred chhhHHHHhHHHHHHHhhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhHHhhhhhccccchHHHHHhhcCCCCC
Q 010766 2 LKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSN 81 (502)
Q Consensus 2 ~~~~~~~~~l~rllr~~rl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~ 81 (502)
|..++++|||+||.|++++++++.+..++..+++|..++++|+++++++||+||+||+||+++.+.||.++
T Consensus 197 l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~--------- 267 (727)
T KOG0498|consen 197 LVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA--------- 267 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---------
Confidence 56788999999999999999999999999999999998899999999999999999999999988887443
Q ss_pred CCcccccCCCCCCCccccccccCCCCCccccCCCCccccchhhhhhcccccCCChhHHHHHHHHHHHHhhcccCCCcccc
Q 010766 82 CTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTS 161 (502)
Q Consensus 82 c~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ttvGyGdi~p 161 (502)
+|+...+...+++ +..|.||+|. ++.+|++|+||+++||||+||||++|
T Consensus 268 ---------------tw~~~l~~~~~~~----~~~~~fg~~s------------~~~kY~~aLyw~l~tLstvG~g~~~s 316 (727)
T KOG0498|consen 268 ---------------TWLGSLGRLLSCY----NLSFTFGIYS------------LALKYVYALYWGLSTLSTVGYGLVHA 316 (727)
T ss_pred ---------------ccccccccccccC----cccccccchh------------HHHHHHHHHHHHhhHhhhccCCccCC
Confidence 4555432111111 1236687765 45599999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHHHHHHHHHHhhcCCC
Q 010766 162 TFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVE 241 (502)
Q Consensus 162 ~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~ 241 (502)
+|..|++|+|++|++|.++||++||+|+++++..+++..+|+.++.++++||+++++|+.||+||++|++|.|..++|+|
T Consensus 317 ~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvd 396 (727)
T KOG0498|consen 317 NNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVD 396 (727)
T ss_pred CCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe
Q 010766 242 EEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT 321 (502)
Q Consensus 242 ~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~ 321 (502)
|+++|+.||++||++|+.+++.++++++|+|+++|++++.+|+.++++..|+|||+|+++||+.++||||.+|.+++...
T Consensus 397 ee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~ 476 (727)
T KOG0498|consen 397 EEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITT 476 (727)
T ss_pred HHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhh
Q 010766 322 YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRF 401 (502)
Q Consensus 322 ~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~ 401 (502)
++|.+. +...+++||+|||.-+.|..+. |++++|+|+|.|+++.|++++|..++++||.++.++++++.++
T Consensus 477 ~~g~~~--~~~~L~~Gd~~GeEl~~~~~~~-------p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~ 547 (727)
T KOG0498|consen 477 DGGGFF--VVAILGPGDFFGEELLTWCLDL-------PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRY 547 (727)
T ss_pred cCCceE--EEEEecCCCccchHHHHHHhcC-------CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHH
Confidence 776443 5699999999995555565532 1388999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCCCCCCC
Q 010766 402 HSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSGTRLP 481 (502)
Q Consensus 402 ~~~~~~~~~~~~~q~~~~~~~~r~~~~~~~~a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~~~~~~ 481 (502)
++.+|+.+..+.+|..|+++.++.....+...+. ....-...++..+.+.....|+....++....+.. .+.++.
T Consensus 548 ~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 622 (727)
T KOG0498|consen 548 YSHLWRTWAACFIQAAWRRHIKRKGEEELALEEE-ESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTA----ASRGSS 622 (727)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHhhccchhhhhcc-hhhhccccccchhhhhcccccccccccCCCccccc----cccCcc
Confidence 9999999999999999999988775544433211 11111144556666777777777766665555322 344444
Q ss_pred ccCCCCCCCCCCCCCCCCCC
Q 010766 482 QRLLPPLIPQKPAEPDFTAK 501 (502)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~ 501 (502)
.+. +..+|+|.+|+|..+
T Consensus 623 ~~~--~~~~~~~~~p~f~~~ 640 (727)
T KOG0498|consen 623 DCA--LLLLQKPADPDFSDA 640 (727)
T ss_pred ccc--cccCCCCCCCCcccc
Confidence 454 667899999999864
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4709 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 502 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 1e-47 | ||
| 1q3e_A | 207 | Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | 3e-12 | ||
| 3otf_A | 220 | Structural Basis For The Camp-Dependent Gating In H | 3e-12 | ||
| 3u10_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 3e-12 | ||
| 3ffq_A | 202 | Hcn2i 443-640 Apo-State Length = 202 | 3e-12 | ||
| 2q0a_A | 200 | Structure And Rearrangements In The Carboxy-Termina | 4e-12 | ||
| 3bpz_A | 202 | Hcn2-I 443-460 E502k In The Presence Of Camp Length | 6e-12 | ||
| 4hbn_A | 205 | Crystal Structure Of The Human Hcn4 Channel C-termi | 9e-12 | ||
| 3etq_A | 204 | X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 | 6e-11 | ||
| 3u11_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 1e-10 | ||
| 3u0z_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 1e-10 | ||
| 2ptm_A | 198 | Structure And Rearrangements In The Carboxy-Termina | 4e-10 | ||
| 1q43_A | 207 | Hcn2i 443-640 In The Presence Of Camp, Selenomethio | 5e-10 | ||
| 3ukn_A | 212 | Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN | 7e-08 | ||
| 3beh_A | 355 | Structure Of A Bacterial Cyclic Nucleotide Regulate | 6e-07 | ||
| 3clp_A | 140 | M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 L | 4e-06 | ||
| 2k0g_A | 142 | Solution Structure Of A Bacterial Cyclic Nucleotide | 5e-06 | ||
| 3co2_A | 140 | Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domai | 5e-06 | ||
| 3cl1_A | 140 | M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gm | 5e-06 | ||
| 1u12_A | 138 | M. Loti Cyclic Nucleotide Binding Domain Mutant Len | 6e-06 | ||
| 1vp6_A | 138 | M.Loti Ion Channel Cylic Nucleotide Binding Domain | 6e-06 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
| >pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | Back alignment and structure |
| >pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 | Back alignment and structure |
| >pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 | Back alignment and structure |
| >pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 | Back alignment and structure |
| >pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 | Back alignment and structure |
| >pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 | Back alignment and structure |
| >pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 | Back alignment and structure |
| >pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 | Back alignment and structure |
| >pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 | Back alignment and structure |
| >pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 | Back alignment and structure |
| >pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355 | Back alignment and structure |
| >pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 Length = 140 | Back alignment and structure |
| >pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide- Activated K+ Channel Binding Domain In Complex With Camp Length = 142 | Back alignment and structure |
| >pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain Mutant Length = 140 | Back alignment and structure |
| >pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound Length = 140 | Back alignment and structure |
| >pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant Length = 138 | Back alignment and structure |
| >pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain Length = 138 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 1e-72
Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 17/213 (7%)
Query: 192 LESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPK 251
+ R + +D + ++ LP+ L R+ Q W G++ LL++ P
Sbjct: 4 DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63
Query: 252 DLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFV 311
+LR DI HL +LL ++P+FE L ++ +K F++R+GD ++ + FV
Sbjct: 64 ELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFV 122
Query: 312 MRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVE 371
G++ L GD G LT + + V+ALT +
Sbjct: 123 CSGSMEVLKDNTVLA------ILGKGDLIGSDSLTKEQVIK-------TNANVKALTYCD 169
Query: 372 AFSLMADDLKSVAS---QFRRLHSKQLQHAFRF 401
+ L+ V ++ + ++QH +
Sbjct: 170 LQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Length = 202 | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238 | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195 | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 502 | |||
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.98 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.97 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.97 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.97 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.95 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.92 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.91 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.9 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.9 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.9 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.9 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.89 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.89 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.89 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.89 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.89 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.88 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.88 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.88 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.86 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.84 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.83 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.83 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.81 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.78 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.77 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.76 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.76 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.74 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.74 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.74 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.73 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.72 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.69 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.68 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.67 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.65 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.63 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.63 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.62 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.62 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.62 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.62 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.61 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.58 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.57 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.56 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.56 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.55 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.55 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.53 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.52 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.51 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.47 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.45 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.42 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.39 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.35 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 99.34 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.34 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 99.32 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 99.25 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.22 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 99.13 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 99.05 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 99.03 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.96 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.91 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.78 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.74 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.71 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.69 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.66 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.58 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 98.4 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 98.39 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 95.91 | |
| 3fjs_A | 114 | Uncharacterized protein with RMLC-like cupin fold; | 80.67 |
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-32 Score=255.03 Aligned_cols=203 Identities=23% Similarity=0.360 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHHHHHHHHHHhhcCCCHHHHHhcCChHHHHHHHHHHHHHHhcc
Q 010766 189 QKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMR 268 (502)
Q Consensus 189 ~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~ 268 (502)
++|+++++++..+|+++|+.+++||+++++|.+||.||++||+|.|+.+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 468899999999999999999999999999999999999999999998888999999999999999999999998877 8
Q ss_pred CcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhh
Q 010766 269 VPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWA 348 (502)
Q Consensus 269 ~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~ 348 (502)
+++|.+++++++..++..++.+.|+|||+|+++|++++.+|||.+|.|+++.. |. ++..+++|++||+.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~----~~~~l~~G~~fGe~~~~-- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD--NT----VLAILGKGDLIGSDSLT-- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS--SC----EEEEECTTCEEECSCCS--
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC--Ce----EEEEecCCCCcCcHHhc--
Confidence 99999999999999999999999999999999999999999999999999863 31 46999999999999874
Q ss_pred cCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhh
Q 010766 349 LDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQ 405 (502)
Q Consensus 349 ~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~ 405 (502)
.+. .++++++++|.++|+++.|++++|.++++.+|++...+++...+.....
T Consensus 152 -~~~----~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~ 203 (212)
T 3ukn_A 152 -KEQ----VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYN 203 (212)
T ss_dssp -SSS----CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEE
T ss_pred -cCC----CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhccc
Confidence 322 0025899999999999999999999999999999987777766654443
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 502 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 3e-24 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 8e-15 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 3e-11 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 1e-09 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 3e-09 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 6e-09 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 1e-08 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 4e-08 | |
| d1i5za2 | 132 | b.82.3.2 (A:6-137) Catabolite gene activator prote | 5e-06 | |
| d1lnqa2 | 80 | f.14.1.1 (A:19-98) Potassium channel-related prote | 9e-06 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 7e-05 | |
| d2gaua2 | 142 | b.82.3.2 (A:10-151) Transcriptional regulator PG03 | 7e-05 | |
| d1p7ba2 | 116 | f.14.1.1 (A:36-151) Inward rectifier potassium cha | 1e-04 | |
| d1xl4a2 | 116 | f.14.1.1 (A:23-138) Inward rectifier potassium cha | 2e-04 | |
| d1r3jc_ | 103 | f.14.1.1 (C:) Potassium channel protein {Streptomy | 4e-04 | |
| d2oz6a2 | 134 | b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei | 0.001 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 96.2 bits (238), Expect = 3e-24
Identities = 87/128 (67%), Positives = 106/128 (82%)
Query: 264 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYG 323
+ RVP+FE MD++LLDA+C+ LKP L+TEKS++VREGDPV EMLF++RG L S TT G
Sbjct: 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65
Query: 324 GRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSV 383
GR+GF+N LK GDFCG+ LLTWALDP+S SN P STRTV+ALTEVEAF+L+AD+LK V
Sbjct: 66 GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125
Query: 384 ASQFRRLH 391
ASQFRR
Sbjct: 126 ASQFRRSG 133
|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 502 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.81 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.78 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.78 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.75 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.75 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.75 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.74 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.73 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.73 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.69 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.69 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.69 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.67 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.62 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.61 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.47 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.46 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.41 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 99.34 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.99 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 97.05 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 93.56 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 90.72 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 83.28 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=3e-30 Score=236.61 Aligned_cols=185 Identities=25% Similarity=0.431 Sum_probs=168.2
Q ss_pred HHHHHHHHHHhHhHHHHhhhccCchhHHHHHHHHHHHHHHhhcCCCHHHHHhcCChHHHHHHHHHHHHHHhccCcCccCC
Q 010766 196 TVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKM 275 (502)
Q Consensus 196 ~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~l 275 (502)
++...+|+++|+.+++||+.+++|.+++.||++||+|.|.. +..+++++++.||++|+.++..+++.++++++|+|+++
T Consensus 1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~ 79 (193)
T d1q3ea_ 1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA 79 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence 45678899999999999999999999999999999999976 67789999999999999999999999999999999999
Q ss_pred CHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCC
Q 010766 276 DDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSS 355 (502)
Q Consensus 276 s~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~ 355 (502)
+++++..++..+++..|.|||+|+++|++++.+|||.+|.|.++..++ + ...+++|++||+.+++ .+.+
T Consensus 80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~-~-----~~~l~~G~~fGe~~~~---~~~~-- 148 (193)
T d1q3ea_ 80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN-K-----EMKLSDGSYFGEICLL---TRGR-- 148 (193)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CC-C-----EEEECTTCEECHHHHH---HCSB--
T ss_pred hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCc-c-----eeeeccceeeeeeecc---CCCc--
Confidence 999999999999999999999999999999999999999999986433 2 3678999999999985 3332
Q ss_pred CCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHH
Q 010766 356 NRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQ 396 (502)
Q Consensus 356 ~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~ 396 (502)
++++++|.++|+++.|++++|.++++.+|++...+.+
T Consensus 149 ----~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~ 185 (193)
T d1q3ea_ 149 ----RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 185 (193)
T ss_dssp ----CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHH
T ss_pred ----ccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHH
Confidence 4899999999999999999999999999987764433
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|